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{{f5samples
 
{{f5samples
|id=FF:10224-103H8
+
|DRA_sample_Accession=chicken_CAGE@SAMD00053760
|name=
+
|accession_numbers=chicken_CAGE;DRX057284;DRR063043;DRZ007538;DRZ007570
|sample_id=10224
+
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000061,UBERON:0000465,UBERON:0001062
|rna_tube_id=103H8
 
|rna_box=103
 
|rna_position=H8
 
|sample_cell_lot=#15
 
|sample_cell_catalog=
 
|sample_company=
 
|rna_lot_number=
 
|rna_catalog_number=
 
|sample_species=Chicken (Gallus gallus)
 
|sample_strain=
 
|sample_dev_stage=HH20
 
|sample_tissue=whole body
 
|sample_donor(cell lot)=
 
|sample_sex=
 
|sample_age=
 
|sample_ethnicity=
 
|rna_rin=
 
|rna_od260/230=
 
|rna_od260/280=
 
|sample_cell_type=CELL MIXTURE - tissue sample
 
|sample_cell_line=
 
|sample_collaboration=
 
|sample_experimental_condition=
 
|sample_disease=
 
|rna_sample_type=
 
|rna_extraction_protocol=
 
|rna_weight_ug=100
 
|rna_concentration=1.7
 
|sample_note=Roughly equivalent of mouse E10.5
 
|profile_hcage=CNhs13978,LSID1138,release015,SEQUENCING QUEUE
 
|profile_cagescan=
 
|profile_srnaseq=
 
|profile_rnaseq=
 
 
|ancestors_in_cell_lineage_facet=
 
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000468,UBERON:0000922,UBERON:0001062
 
 
|ancestors_in_disease_facet=
 
|ancestors_in_disease_facet=
|sample_description=
+
|ancestors_in_ff_facet=FF:0000101,FF:0000032,FF:0000001,FF:0000242,FF:0000217,FF:0000237
 +
|comment=
 +
|created_by=
 +
|creation_date=
 +
|def=
 
|fonse_cell_line=
 
|fonse_cell_line=
 
|fonse_cell_line_closure=
 
|fonse_cell_line_closure=
Line 66: Line 36:
 
|fonse_treatment=
 
|fonse_treatment=
 
|fonse_treatment_closure=
 
|fonse_treatment_closure=
|top_motifs=
 
|comment=
 
|created_by=
 
|creation_date=
 
|def=
 
 
|has_quality=
 
|has_quality=
 +
|id=FF:10224-103H8
 
|is_a=EFO:0002091;;FF:0000237
 
|is_a=EFO:0002091;;FF:0000237
 +
|is_obsolete=
 +
|library_id=CNhs13980
 +
|name=chicken embryo whole body, day03 (HH20)
 
|namespace=FANTOM5
 
|namespace=FANTOM5
 
|part_of=
 
|part_of=
 +
|profile_cagescan=
 +
|profile_hcage=CNhs13980,LSID1138,Release_017,COMPLETED
 +
|profile_rnaseq=
 +
|profile_srnaseq=
 +
|rna_box=103
 +
|rna_catalog_number=
 +
|rna_concentration=1.7
 +
|rna_extraction_protocol=
 +
|rna_lot_number=
 +
|rna_od260/230=
 +
|rna_od260/280=
 +
|rna_position=H8
 +
|rna_rin=
 +
|rna_sample_type=
 +
|rna_tube_id=103H8
 +
|rna_weight_ug=100
 +
|sample_age=
 +
|sample_category=tissues
 +
|sample_cell_catalog=
 +
|sample_cell_line=
 +
|sample_cell_lot=#15
 +
|sample_cell_type=CELL MIXTURE - tissue sample
 +
|sample_collaboration=
 +
|sample_company=
 +
|sample_description=
 +
|sample_dev_stage=HH20
 +
|sample_disease=
 +
|sample_donor(cell lot)=
 +
|sample_ethnicity=
 +
|sample_experimental_condition=
 +
|sample_id=10224
 +
|sample_note=Roughly equivalent of mouse E10.5
 +
|sample_sex=
 +
|sample_species=Gallus gallus
 +
|sample_strain=
 +
|sample_tissue=whole body
 +
|top_motifs=
 +
|xref=
 +
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_chicken;search_select_hide=table111:FF:10224-103H8;search_select_hide=table117:FF:10224-103H8
 
}}
 
}}

Latest revision as of 00:38, 5 June 2020


Name:chicken embryo whole body, day03 (HH20)
Species:Gallus gallus
Library ID:CNhs13980
Sample type:tissues
ZENBU report :link
Additional information
Sample information
strainNA
tissuewhole body
dev stageHH20
sexNA
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationNA
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
chicken_CAGE  SAMD00053760
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13980 chicken_CAGE DRX057284 DRR063043
Accession ID

Library idBAMCTSS
CNhs13980 DRZ007538 DRZ007570



FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000101 (sample by species)
0000032 (chicken sample)
0000001 (sample)
0000242 (chicken developmental series)
0000217 (chicken whole embryo)
0000237 (chicken embryo whole body day3 HH20)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

NA