FF:10425-106D2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005348 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007830;DRR008702;DRZ000127;DRZ001512;DRZ011477;DRZ012862 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001017,UBERON:0001016 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000095,CL:0000243,CL:0000128,CL:0000126,CL:0000125,CL:0000255,CL:0000127 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:3093 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100711,FF:0100255,FF:0100690,FF:0101531,FF:0100101 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100255 | |fonse_cell_line=FF:0100255 | ||
|fonse_cell_line_closure=FF:0100255 | |fonse_cell_line_closure=FF:0100255 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/astrocytoma%2520cell%2520line%253aTM-31.CNhs10742.10425-106D2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/astrocytoma%2520cell%2520line%253aTM-31.CNhs10742.10425-106D2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/astrocytoma%2520cell%2520line%253aTM-31.CNhs10742.10425-106D2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/astrocytoma%2520cell%2520line%253aTM-31.CNhs10742.10425-106D2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/astrocytoma%2520cell%2520line%253aTM-31.CNhs10742.10425-106D2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10425-106D2 | |id=FF:10425-106D2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0100101 | ||
|is_obsolete= | |||
|library_id=CNhs10742 | |||
|library_id_phase_based=2:CNhs10742 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10425 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10425 | |||
|name=astrocytoma cell line:TM-31 | |name=astrocytoma cell line:TM-31 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10742,LSID692,release008,COMPLETED | |profile_hcage=CNhs10742,LSID692,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0404101382250875,0.0422874684771159,0.315346008302067,0,0,-0.0113840036415132,0.116211135592663,-0.0979989747950102,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.111035541871312,0,0,0,0,0,-0.0979578962680575,0,0,-0.0906691213017463,0,0,0,0,0,0,0,0,0,0,1.08812031466965,0,-0.0917510408216052,0,0,0,0.148934026444873,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0,-0.0969923612426051,0,0,-0.0165233507629219,0,0,0,0,0,0,0,0,0.080820276450175,0,0,0,0,0.0422874684771159,0,0,0,-0.0435927965080426,0,0,0,0.023750225450436,0,0.0116887055275254,-0.0391554472134682,0.0404101382250875,0,0,0.0443067109671296,-0.153091834899537,0,0.0422874684771159,0.0211437342385579,0.148934026444873,0.136451757760948,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0382680261261293,0,0,0,-0.0886895368497658,-0.154001107753671,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0.0422874684771159,0,0.136451757760948,0.807551274749548,0.148934026444873,0,0,0,0.080820276450175,0,0,0.0422874684771159,0,0,0.058749770365233,0.0615538724636455,0.0892744987817241,-0.0273040069308086,0.0211437342385579,0,0.10370064256303,0,0,0,0,0,0,0,0,0,0.0208141594923082,0,-0.0504125515893149,0,0,0,0,0.186498195527858,-0.305472230898407,0,0.0601448147203535,0.166142847921286,0,0,0,0,-0.17462992187333,0,-0.0785920153166247,0.125078972197161,0.0422874684771159,0.241764604890968,0.102129367552493,0,0,0,-0.156831587294803,-0.32041079837712,0,0,-0.121779851751874,0.0813140271646405,0,0,0.73523331717189,0,-0.338011366083994,0.457272268949055,0,-0.00140663512984623,0,0,0,0,0,0.0422874684771159,0,0,0,0,0,-0.0152059983443208,-0.0435927965080426,0,0.0422874684771159,0.080820276450175,0,0.130612097593608,0,0.0186599666618022,-0.373286155956567,-0.184397373357681,0.022059908074181,0.0138314900006543,0,-0.260102258532797,-0.00744526764849655,0.105959595730019,0.0443067109671296,-0.147401849371139,-0.189981719549847,0.0422874684771159,-0.420660971691672,0.17177619363449,0,-0.174276598467987,0,0.381238204742185,0.0235560934535017,0.116211135592663,0.080820276450175,0,-0.0412544752670301,0,0,0.0078706630136569,0.104690293642658,-0.096525908577961,-0.102004090296805,0.0963087324323015,0.240227239677675,0.991675462833734,-0.0536246600622411,0.0499675347535911,0.312578351975755,0,0,0.060964819494168,-0.0491230455065407,0.0798229023740783,-0.229905184984025,0,0.363215780755655,-0.0683442610773682,0.13373057142947,0.305015222297692,0.0594873265733469,0,0.080820276450175,0.091623805575678,0.116211135592663,0,0,0,0.234487108998655,-0.0368586943661764,0.0806781914815593,-0.0839215351106719,0,-0.011367769310534,0,0.0426068385576258,0,-0.111747729950798,0,0.0190236527477058,0.0551301302602814,0,-0.091256404422497,-0.488862728427535,-0.0487795607463395,-0.306183669799074,0.0223734496383499,0.033452075998206,-0.133047939772424,-0.0324894457098863,0.133440154913603,0.0263680166183974,1.50228786467601,0,0.150593937265187,0.106787105235553,-0.105475479880713,-0.0468708594954055,0,0.195866244554463,0,0.210340962879917,0,-0.200180292846446,0.148538370944972,-0.00176590846642294,-0.282948939678351,0.00432611877511757,0.0150522787883598,0.0653312645145783,0.080820276450175,-0.0524216752294595,0,0.207799140520579,-0.00143305688976639,-0.311774978317929,-0.190506693626031,0.120182414603024,0,0.0377442532495006,0,0,-0.139433936239227,-0.000988928765734032,0,-0.0677508770270671,-0.0838756227627974,-0.166692575081031,0.0918280670856445,0.0422874684771159,0.116211135592663,0.052267777023043,0,0,0.725574878399581,0,0.475528760980442,0.36684399302497,-0.0539549011850555,0.685598099151468,0,0,-0.0613166303725124,0.0422874684771159,-0.169631668593907,0,0,-0.0455994927252866,-0.116628112990133,0,0.0211437342385579,0.679785837820425,0.030386343090139,0.0311387801221812,0,0,0,0,0,0.0422874684771159,0.0298744196400329,0.0986128762087231,0,-0.250416383439341,0,0,0,0,0,0,0,0.259629581302201,0.486997848453894,-0.054545829365629,0.0259166107684527,0.0792493020348894,0,0,0,-0.215723402553475,-0.122416285644549,0.0422874684771159,0.0475004509008721,0,0.103899570260289,0,0,0.0932221676092924,0,0,0,0.0581055677963315,-0.057730457053664,-0.192681044314761,0,0,0,-0.27695440160179,0,0,0,0,-0.151625594967607,0,0,-0.397443064387725,0,-0.385158115755761,0.493750832431061,0,0.14060001409108,-0.0501114050697362,0.374779730664493,0,0.0422874684771159,0.0660027094015095,0,0,0.026023361465618,0,0,0.0605052553665429,0,0,0,0,0.0958662138281733,0.0422874684771159,-0.214314512399756,0,0,0,0,0,0.080820276450175,0.0422874684771159,0,0,0,0,-0.199229191238452,-0.0922240566585104,0.234487108998655,0,0,0,0,0,0,0.0181814453982128,0.043730909939939,0.0211437342385579,0,0,0,0,0.080820276450175,0,0,-0.263626799142664,0,0,0,0.00229741529287133,0,-0.0969923612426051,0,0.0422874684771159,0,0.080820276450175,-0.564807121153884,0,0,-0.0979989747950102,0,0.00454549576678496,0,0,0,0,0.0384722601870745,0,0,0,0,0,0,-0.00710795044278449,-0.257259213283592,0,0.080820276450175,0,0.0422874684771159,0,0.116211135592663,0,-0.0954701408075867,0,0,0,0,0.0654787836895266,0.630692016604135,0,0,0.348649821636015,0,-0.0113840036415132,0,0,0,0,0,0,0.0744670132224365,0.0211437342385579,0,0,0,0,0,0,0,0,0,0,0,0,0,0.409983073952547,0,-0.0254855125469303,-0.0396589034416742,0,0,0.0490520061338245,0,0,0,0,0,0,-0.0101966897899691,0,0,0,0,0,0,0,0.0744670132224365,0,0,0,0,0,0,0,0.0211437342385579,0,0,0,0,0,0,0,0,0.0211437342385579,-0.00864612218245985,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.0127835077656365,0,0,0,0,0,0,-0.0950163465593825,0.476174755184329,0.0135971865485401,0,0,0,0.0706577320163925,0,0,0.00962584530149324,0,0.192852193883299,0,0,0,0,0,0,0,0,0.234487108998655,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.111035541871312,0,0,0,0,0,0,0,0,0,0,0,0,0.0211437342385579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0422874684771159,0,0,0,0.0615993841855779,0.116211135592663,0,0,0,0,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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=18.946 | |rna_weight_ug=18.946 | ||
|sample_age=42 | |sample_age=42 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1731 | |sample_cell_catalog=RCB1731 | ||
|sample_cell_line=TM-31 | |sample_cell_line=TM-31 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=J | |sample_ethnicity=J | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;9.06479309201209e-255!GO:0043226;organelle;1.23364163213604e-213!GO:0043229;intracellular organelle;3.34375192668335e-213!GO:0043231;intracellular membrane-bound organelle;1.46191709651048e-206!GO:0043227;membrane-bound organelle;2.55862618795911e-206!GO:0005737;cytoplasm;5.29207347163844e-174!GO:0044422;organelle part;1.09813093182015e-146!GO:0044446;intracellular organelle part;3.16670185053374e-145!GO:0044444;cytoplasmic part;1.69360989490806e-118!GO:0032991;macromolecular complex;1.52948278849785e-100!GO:0005634;nucleus;6.61322504478478e-95!GO:0044238;primary metabolic process;2.31119899037167e-90!GO:0044237;cellular metabolic process;9.87208020991059e-89!GO:0043170;macromolecule metabolic process;4.35278418038619e-88!GO:0030529;ribonucleoprotein complex;1.71878969602941e-81!GO:0044428;nuclear part;1.8130165737514e-77!GO:0005515;protein binding;2.17646474487393e-75!GO:0003723;RNA binding;1.31578840105257e-69!GO:0043233;organelle lumen;1.31578840105257e-69!GO:0031974;membrane-enclosed lumen;1.31578840105257e-69!GO:0043283;biopolymer metabolic process;1.11154070609046e-57!GO:0005739;mitochondrion;1.51352995449133e-55!GO:0016043;cellular component organization and biogenesis;4.43178202996929e-55!GO:0043234;protein complex;8.81463602625732e-52!GO:0006396;RNA processing;1.55707205568607e-49!GO:0010467;gene expression;2.65040093704516e-48!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.94633266842057e-47!GO:0031981;nuclear lumen;9.63690194847356e-47!GO:0031090;organelle membrane;9.94416305531449e-47!GO:0005840;ribosome;1.38888079617868e-45!GO:0033036;macromolecule localization;2.34487835532963e-45!GO:0015031;protein transport;1.01618805630395e-44!GO:0006412;translation;8.21257581542454e-43!GO:0019538;protein metabolic process;4.91181385672033e-42!GO:0043228;non-membrane-bound organelle;1.96254954254704e-41!GO:0043232;intracellular non-membrane-bound organelle;1.96254954254704e-41!GO:0008104;protein localization;8.79754732914079e-41!GO:0016071;mRNA metabolic process;1.11624318063598e-40!GO:0045184;establishment of protein localization;8.52880855510521e-40!GO:0003735;structural constituent of ribosome;1.06719454933001e-39!GO:0008380;RNA splicing;1.2109962668341e-38!GO:0046907;intracellular transport;3.81843159898379e-38!GO:0044260;cellular macromolecule metabolic process;8.98088749969476e-38!GO:0044267;cellular protein metabolic process;1.23473431899343e-37!GO:0044429;mitochondrial part;1.68582459655606e-37!GO:0006996;organelle organization and biogenesis;3.70754065907777e-36!GO:0031967;organelle envelope;8.81075606939858e-36!GO:0006397;mRNA processing;1.00901228486397e-35!GO:0031975;envelope;1.23231693127535e-35!GO:0006259;DNA metabolic process;6.75702886460589e-33!GO:0009059;macromolecule biosynthetic process;7.61419489798378e-33!GO:0003676;nucleic acid binding;9.42906404168649e-33!GO:0009058;biosynthetic process;1.64526461535792e-32!GO:0033279;ribosomal subunit;1.98251839119411e-32!GO:0065003;macromolecular complex assembly;4.46561634378927e-32!GO:0005829;cytosol;3.92570125719198e-31!GO:0005654;nucleoplasm;2.00532329390385e-30!GO:0044249;cellular biosynthetic process;4.99098725353321e-30!GO:0006886;intracellular protein transport;3.95748915605446e-29!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.84771015145788e-27!GO:0022607;cellular component assembly;6.32375777377285e-27!GO:0005681;spliceosome;6.42714081826195e-27!GO:0007049;cell cycle;2.25080564816265e-26!GO:0016070;RNA metabolic process;6.41566418371825e-26!GO:0044451;nucleoplasm part;1.47679661712926e-25!GO:0051641;cellular localization;5.66873287836801e-24!GO:0000166;nucleotide binding;5.66873287836801e-24!GO:0051649;establishment of cellular localization;7.16235551038593e-24!GO:0005740;mitochondrial envelope;8.36468842380411e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.79485050326245e-23!GO:0019866;organelle inner membrane;4.5882003446268e-23!GO:0031966;mitochondrial membrane;4.59942524423122e-23!GO:0016462;pyrophosphatase activity;1.80246952416747e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.41651713415256e-22!GO:0017111;nucleoside-triphosphatase activity;3.37461374453601e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;3.70961361072906e-22!GO:0005743;mitochondrial inner membrane;6.98220805817468e-21!GO:0000278;mitotic cell cycle;1.5501508869442e-20!GO:0012505;endomembrane system;3.4827383083399e-20!GO:0005694;chromosome;1.54321417511329e-19!GO:0022402;cell cycle process;1.65299160402967e-19!GO:0006119;oxidative phosphorylation;4.93067195051252e-19!GO:0044445;cytosolic part;7.4528174836763e-19!GO:0016874;ligase activity;9.89047724772602e-19!GO:0051603;proteolysis involved in cellular protein catabolic process;4.74873956801896e-18!GO:0006512;ubiquitin cycle;5.62021421052645e-18!GO:0006511;ubiquitin-dependent protein catabolic process;6.99992053374371e-18!GO:0006974;response to DNA damage stimulus;7.31713081030722e-18!GO:0019941;modification-dependent protein catabolic process;8.77322794752294e-18!GO:0043632;modification-dependent macromolecule catabolic process;8.77322794752294e-18!GO:0044265;cellular macromolecule catabolic process;1.01703204558186e-17!GO:0015935;small ribosomal subunit;1.03545589598639e-17!GO:0044257;cellular protein catabolic process;1.04610883385564e-17!GO:0032553;ribonucleotide binding;1.05043181792326e-17!GO:0032555;purine ribonucleotide binding;1.05043181792326e-17!GO:0000502;proteasome complex (sensu Eukaryota);4.06649609288349e-17!GO:0022618;protein-RNA complex assembly;4.78591311343777e-17!GO:0005783;endoplasmic reticulum;4.87240323684164e-17!GO:0008134;transcription factor binding;5.4765543380565e-17!GO:0044455;mitochondrial membrane part;5.78960303480029e-17!GO:0044427;chromosomal part;7.56325410463793e-17!GO:0017076;purine nucleotide binding;1.07196144370306e-16!GO:0000087;M phase of mitotic cell cycle;1.46911598150042e-16!GO:0006457;protein folding;1.76645614462989e-16!GO:0005794;Golgi apparatus;1.79561796603121e-16!GO:0007067;mitosis;2.0757437683631e-16!GO:0043285;biopolymer catabolic process;2.33368027620616e-16!GO:0005730;nucleolus;3.2481424887673e-16!GO:0031980;mitochondrial lumen;4.66588887717606e-16!GO:0005759;mitochondrial matrix;4.66588887717606e-16!GO:0051301;cell division;5.30793368965265e-16!GO:0015934;large ribosomal subunit;8.65630805367197e-16!GO:0051276;chromosome organization and biogenesis;1.56041000663911e-15!GO:0006281;DNA repair;1.78674747986895e-15!GO:0048770;pigment granule;4.12793160837988e-15!GO:0042470;melanosome;4.12793160837988e-15!GO:0030163;protein catabolic process;6.64818534880904e-15!GO:0009057;macromolecule catabolic process;8.31983861256851e-15!GO:0048193;Golgi vesicle transport;9.32299468489765e-15!GO:0006605;protein targeting;1.73976932055406e-14!GO:0008135;translation factor activity, nucleic acid binding;3.21282017064116e-14!GO:0022403;cell cycle phase;3.72786534380611e-14!GO:0044248;cellular catabolic process;3.80544800447749e-14!GO:0044432;endoplasmic reticulum part;4.80186814577296e-14!GO:0005524;ATP binding;5.20225925018677e-14!GO:0043412;biopolymer modification;5.850253951415e-14!GO:0050794;regulation of cellular process;1.38364268083068e-13!GO:0005761;mitochondrial ribosome;1.57791225216954e-13!GO:0000313;organellar ribosome;1.57791225216954e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.07491359185732e-13!GO:0006366;transcription from RNA polymerase II promoter;2.07785859276294e-13!GO:0032559;adenyl ribonucleotide binding;2.84620563277403e-13!GO:0031965;nuclear membrane;2.84620563277403e-13!GO:0005746;mitochondrial respiratory chain;3.81476338608814e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;5.35752779952588e-13!GO:0000375;RNA splicing, via transesterification reactions;5.35752779952588e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.35752779952588e-13!GO:0016192;vesicle-mediated transport;6.75940486252325e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;8.97806474190783e-13!GO:0016887;ATPase activity;1.21472569150374e-12!GO:0005635;nuclear envelope;1.30541174857861e-12!GO:0042623;ATPase activity, coupled;1.57860613548959e-12!GO:0050136;NADH dehydrogenase (quinone) activity;2.69641237873722e-12!GO:0003954;NADH dehydrogenase activity;2.69641237873722e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.69641237873722e-12!GO:0051082;unfolded protein binding;2.88377819649501e-12!GO:0030554;adenyl nucleotide binding;3.13949703106367e-12!GO:0000279;M phase;3.13949703106367e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.1923304632002e-12!GO:0006464;protein modification process;3.90152678278485e-12!GO:0006323;DNA packaging;4.30790481597806e-12!GO:0006260;DNA replication;4.67826488080455e-12!GO:0015630;microtubule cytoskeleton;4.93658552039719e-12!GO:0009719;response to endogenous stimulus;6.37504183890073e-12!GO:0044453;nuclear membrane part;7.81787558955333e-12!GO:0004386;helicase activity;1.52239686767271e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.67127982078717e-11!GO:0003712;transcription cofactor activity;1.68449194037996e-11!GO:0016604;nuclear body;2.12240160231215e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.23804806299262e-11!GO:0003743;translation initiation factor activity;3.83197441824667e-11!GO:0051186;cofactor metabolic process;3.89729667866325e-11!GO:0051726;regulation of cell cycle;4.20525024746962e-11!GO:0005789;endoplasmic reticulum membrane;4.21503896123683e-11!GO:0042254;ribosome biogenesis and assembly;5.20774836193161e-11!GO:0042775;organelle ATP synthesis coupled electron transport;5.76313759064391e-11!GO:0042773;ATP synthesis coupled electron transport;5.76313759064391e-11!GO:0000074;regulation of progression through cell cycle;6.03783831849207e-11!GO:0008639;small protein conjugating enzyme activity;9.53782276798318e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.32890779862044e-10!GO:0045271;respiratory chain complex I;1.32890779862044e-10!GO:0005747;mitochondrial respiratory chain complex I;1.32890779862044e-10!GO:0004842;ubiquitin-protein ligase activity;1.55775598942729e-10!GO:0043687;post-translational protein modification;1.64767396226151e-10!GO:0006913;nucleocytoplasmic transport;1.88983222626988e-10!GO:0006413;translational initiation;2.05975859850768e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.29102346051117e-10!GO:0000785;chromatin;2.37371245054623e-10!GO:0006446;regulation of translational initiation;2.49660456099662e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.09149822384379e-10!GO:0048523;negative regulation of cellular process;3.46941720403422e-10!GO:0051169;nuclear transport;4.03182016175347e-10!GO:0006403;RNA localization;4.31284244773358e-10!GO:0019787;small conjugating protein ligase activity;4.78266200915861e-10!GO:0065004;protein-DNA complex assembly;7.20803801055461e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.41951944045606e-10!GO:0050657;nucleic acid transport;8.60308631337025e-10!GO:0051236;establishment of RNA localization;8.60308631337025e-10!GO:0050658;RNA transport;8.60308631337025e-10!GO:0008026;ATP-dependent helicase activity;1.02673322860592e-09!GO:0016607;nuclear speck;1.58525646016642e-09!GO:0005643;nuclear pore;1.75540754295641e-09!GO:0008565;protein transporter activity;2.87987226884909e-09!GO:0012501;programmed cell death;3.43773738055347e-09!GO:0006333;chromatin assembly or disassembly;3.48627470905276e-09!GO:0016881;acid-amino acid ligase activity;3.57124463110275e-09!GO:0006461;protein complex assembly;4.23891692438897e-09!GO:0005667;transcription factor complex;4.39581355294382e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.77773933203449e-09!GO:0005793;ER-Golgi intermediate compartment;4.93621908111902e-09!GO:0006915;apoptosis;7.22840058714684e-09!GO:0050789;regulation of biological process;7.76458902479568e-09!GO:0006732;coenzyme metabolic process;7.82550325828906e-09!GO:0009259;ribonucleotide metabolic process;1.35971920004095e-08!GO:0003924;GTPase activity;1.55583697349025e-08!GO:0048519;negative regulation of biological process;1.6418470541616e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.90569641653631e-08!GO:0017038;protein import;2.07906705979499e-08!GO:0006163;purine nucleotide metabolic process;3.1106662113203e-08!GO:0065002;intracellular protein transport across a membrane;3.49367853322983e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.51734860122669e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.72369988182286e-08!GO:0005819;spindle;5.01914017915845e-08!GO:0008219;cell death;5.01914017915845e-08!GO:0016265;death;5.01914017915845e-08!GO:0051028;mRNA transport;5.42274169211732e-08!GO:0030532;small nuclear ribonucleoprotein complex;7.92377046078912e-08!GO:0043566;structure-specific DNA binding;1.0646783812956e-07!GO:0019222;regulation of metabolic process;1.20532531703867e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.24350683423237e-07!GO:0005768;endosome;1.27366223098166e-07!GO:0006164;purine nucleotide biosynthetic process;1.45525874439855e-07!GO:0009150;purine ribonucleotide metabolic process;1.50317857624131e-07!GO:0016568;chromatin modification;1.60932489851419e-07!GO:0015986;ATP synthesis coupled proton transport;1.77552893494712e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.77552893494712e-07!GO:0006364;rRNA processing;1.99806315408756e-07!GO:0009260;ribonucleotide biosynthetic process;1.99806315408756e-07!GO:0006399;tRNA metabolic process;2.0595540566242e-07!GO:0005839;proteasome core complex (sensu Eukaryota);2.15794996838218e-07!GO:0016564;transcription repressor activity;2.38769792419407e-07!GO:0009056;catabolic process;2.53355828316645e-07!GO:0046930;pore complex;2.62757233452513e-07!GO:0005813;centrosome;3.32786855089018e-07!GO:0016072;rRNA metabolic process;3.39415543901e-07!GO:0031324;negative regulation of cellular metabolic process;3.51769718238507e-07!GO:0003724;RNA helicase activity;3.66277719638e-07!GO:0045333;cellular respiration;3.74258370708736e-07!GO:0009060;aerobic respiration;3.83786762480607e-07!GO:0005525;GTP binding;4.43245415283991e-07!GO:0004298;threonine endopeptidase activity;5.25827424605125e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.17714239197396e-07!GO:0000775;chromosome, pericentric region;6.28951254447928e-07!GO:0009152;purine ribonucleotide biosynthetic process;7.04483600861558e-07!GO:0009199;ribonucleoside triphosphate metabolic process;7.57289339939154e-07!GO:0007005;mitochondrion organization and biogenesis;8.2436988999267e-07!GO:0030120;vesicle coat;9.0684483106214e-07!GO:0030662;coated vesicle membrane;9.0684483106214e-07!GO:0009141;nucleoside triphosphate metabolic process;9.57135845554907e-07!GO:0005815;microtubule organizing center;1.02167453697414e-06!GO:0043623;cellular protein complex assembly;1.05116456191441e-06!GO:0005770;late endosome;1.07456562240128e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.10333746132904e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.10333746132904e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.10333746132904e-06!GO:0019829;cation-transporting ATPase activity;1.11669570577127e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.21380923500552e-06!GO:0016563;transcription activator activity;1.27249672905133e-06!GO:0044431;Golgi apparatus part;1.32268409320765e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.39555145791464e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.39555145791464e-06!GO:0046034;ATP metabolic process;1.42992932286261e-06!GO:0043069;negative regulation of programmed cell death;1.45417258067762e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.47647289881189e-06!GO:0032446;protein modification by small protein conjugation;1.50922332921413e-06!GO:0043038;amino acid activation;1.51870970792351e-06!GO:0006418;tRNA aminoacylation for protein translation;1.51870970792351e-06!GO:0043039;tRNA aminoacylation;1.51870970792351e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.53094453846657e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.53094453846657e-06!GO:0000245;spliceosome assembly;1.86526984784503e-06!GO:0006334;nucleosome assembly;1.97096918967691e-06!GO:0016740;transferase activity;2.01587994088511e-06!GO:0007051;spindle organization and biogenesis;2.02822473445317e-06!GO:0003697;single-stranded DNA binding;2.13630392101666e-06!GO:0016567;protein ubiquitination;2.18767047716732e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.18767047716732e-06!GO:0006754;ATP biosynthetic process;2.20110868680599e-06!GO:0006753;nucleoside phosphate metabolic process;2.20110868680599e-06!GO:0015078;hydrogen ion transmembrane transporter activity;2.28766573370427e-06!GO:0006099;tricarboxylic acid cycle;2.34155900841381e-06!GO:0046356;acetyl-CoA catabolic process;2.34155900841381e-06!GO:0051246;regulation of protein metabolic process;2.47461273903748e-06!GO:0031252;leading edge;2.48754825483675e-06!GO:0005798;Golgi-associated vesicle;2.49611164406854e-06!GO:0006261;DNA-dependent DNA replication;2.71261469214024e-06!GO:0048475;coated membrane;2.74987882933793e-06!GO:0030117;membrane coat;2.74987882933793e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.84210387726682e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.84210387726682e-06!GO:0009892;negative regulation of metabolic process;2.96245599769347e-06!GO:0043067;regulation of programmed cell death;3.25091045580741e-06!GO:0003714;transcription corepressor activity;3.38664682707055e-06!GO:0006613;cotranslational protein targeting to membrane;3.39529828392463e-06!GO:0043066;negative regulation of apoptosis;3.54262150278533e-06!GO:0009055;electron carrier activity;4.29725159271317e-06!GO:0006752;group transfer coenzyme metabolic process;4.63546243103722e-06!GO:0006084;acetyl-CoA metabolic process;5.02014786113093e-06!GO:0031497;chromatin assembly;5.18036988104417e-06!GO:0042981;regulation of apoptosis;5.66336004912789e-06!GO:0016469;proton-transporting two-sector ATPase complex;5.72499419146604e-06!GO:0045259;proton-transporting ATP synthase complex;7.07410785417595e-06!GO:0031323;regulation of cellular metabolic process;7.3947108323084e-06!GO:0000151;ubiquitin ligase complex;7.46344468318829e-06!GO:0051427;hormone receptor binding;8.03467110589655e-06!GO:0006793;phosphorus metabolic process;9.1683711699148e-06!GO:0006796;phosphate metabolic process;9.1683711699148e-06!GO:0032561;guanyl ribonucleotide binding;9.35667503345083e-06!GO:0019001;guanyl nucleotide binding;9.35667503345083e-06!GO:0016481;negative regulation of transcription;1.05713394765259e-05!GO:0007010;cytoskeleton organization and biogenesis;1.15184242806158e-05!GO:0006606;protein import into nucleus;1.31849792515636e-05!GO:0016779;nucleotidyltransferase activity;1.3752794912987e-05!GO:0031988;membrane-bound vesicle;1.37694158661464e-05!GO:0006916;anti-apoptosis;1.4380753254824e-05!GO:0051187;cofactor catabolic process;1.51513207968811e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.59024569083031e-05!GO:0035257;nuclear hormone receptor binding;1.59024569083031e-05!GO:0044440;endosomal part;1.59559893013118e-05!GO:0010008;endosome membrane;1.59559893013118e-05!GO:0003713;transcription coactivator activity;1.61591201531471e-05!GO:0051188;cofactor biosynthetic process;1.64395751651925e-05!GO:0016787;hydrolase activity;1.77900519290422e-05!GO:0005657;replication fork;1.83284580882586e-05!GO:0045893;positive regulation of transcription, DNA-dependent;2.11243486806815e-05!GO:0016363;nuclear matrix;2.16924208802303e-05!GO:0009109;coenzyme catabolic process;2.1986958254942e-05!GO:0006350;transcription;2.39512149003497e-05!GO:0051170;nuclear import;2.65809451354938e-05!GO:0008186;RNA-dependent ATPase activity;2.76625157159838e-05!GO:0009117;nucleotide metabolic process;2.83996040890094e-05!GO:0005874;microtubule;2.94703706166948e-05!GO:0000075;cell cycle checkpoint;3.39624296770734e-05!GO:0005773;vacuole;3.63786527056385e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.64295842607586e-05!GO:0016310;phosphorylation;3.76884322073972e-05!GO:0003690;double-stranded DNA binding;3.84253853180817e-05!GO:0006612;protein targeting to membrane;3.87339468041089e-05!GO:0051168;nuclear export;4.15206305056777e-05!GO:0045786;negative regulation of progression through cell cycle;4.18643182175009e-05!GO:0051329;interphase of mitotic cell cycle;4.6697211388568e-05!GO:0000776;kinetochore;4.6697211388568e-05!GO:0031982;vesicle;6.64147670044019e-05!GO:0008654;phospholipid biosynthetic process;7.21231838129284e-05!GO:0065007;biological regulation;7.55635822801682e-05!GO:0007264;small GTPase mediated signal transduction;8.00504336259686e-05!GO:0003682;chromatin binding;8.37586442635527e-05!GO:0031410;cytoplasmic vesicle;8.43763835649255e-05!GO:0008094;DNA-dependent ATPase activity;8.48931423302347e-05!GO:0008092;cytoskeletal protein binding;8.50820797904212e-05!GO:0000139;Golgi membrane;8.55285910715513e-05!GO:0004004;ATP-dependent RNA helicase activity;8.95092505839547e-05!GO:0010468;regulation of gene expression;0.000102803021416059!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000115033192344465!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000116870156147616!GO:0048522;positive regulation of cellular process;0.000117271068870892!GO:0051325;interphase;0.000127004916500644!GO:0045941;positive regulation of transcription;0.000128919835134056!GO:0000323;lytic vacuole;0.00013104395976942!GO:0005764;lysosome;0.00013104395976942!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000139191501905487!GO:0005762;mitochondrial large ribosomal subunit;0.0001444773844996!GO:0000315;organellar large ribosomal subunit;0.0001444773844996!GO:0008361;regulation of cell size;0.000166114998487327!GO:0000314;organellar small ribosomal subunit;0.000166956424091352!GO:0005763;mitochondrial small ribosomal subunit;0.000166956424091352!GO:0003899;DNA-directed RNA polymerase activity;0.000175779334950868!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000177031265087294!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000210543707556929!GO:0030867;rough endoplasmic reticulum membrane;0.000212804507599658!GO:0032774;RNA biosynthetic process;0.000222940085835977!GO:0006352;transcription initiation;0.000248179172187241!GO:0006351;transcription, DNA-dependent;0.00027977195287964!GO:0043021;ribonucleoprotein binding;0.000286701618783138!GO:0006302;double-strand break repair;0.000287193779995787!GO:0009108;coenzyme biosynthetic process;0.000295664651956288!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000317297353833041!GO:0019899;enzyme binding;0.000322975096669967!GO:0048471;perinuclear region of cytoplasm;0.000331374006925633!GO:0003729;mRNA binding;0.000332540857749618!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000346162382776315!GO:0015980;energy derivation by oxidation of organic compounds;0.000358716837138315!GO:0033116;ER-Golgi intermediate compartment membrane;0.000373355707217721!GO:0005905;coated pit;0.000375765981517342!GO:0016049;cell growth;0.000399437091089219!GO:0051789;response to protein stimulus;0.000444885075383134!GO:0006986;response to unfolded protein;0.000444885075383134!GO:0007243;protein kinase cascade;0.000495129175075876!GO:0045892;negative regulation of transcription, DNA-dependent;0.000536238476532132!GO:0007052;mitotic spindle organization and biogenesis;0.000540722754711794!GO:0006414;translational elongation;0.000550305196539895!GO:0005788;endoplasmic reticulum lumen;0.000575506919182443!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000595507000496689!GO:0005769;early endosome;0.00060067471995534!GO:0007017;microtubule-based process;0.000640382051291271!GO:0030521;androgen receptor signaling pathway;0.000652030929873014!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000660152605571747!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000699754373792626!GO:0016859;cis-trans isomerase activity;0.000789484341838153!GO:0007093;mitotic cell cycle checkpoint;0.000800207115075815!GO:0051920;peroxiredoxin activity;0.000832446086329856!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000849359023475177!GO:0007088;regulation of mitosis;0.000850614248716151!GO:0008250;oligosaccharyl transferase complex;0.000887701399538046!GO:0006383;transcription from RNA polymerase III promoter;0.00101589217621648!GO:0000786;nucleosome;0.00102193109760223!GO:0030036;actin cytoskeleton organization and biogenesis;0.00109315986322962!GO:0045454;cell redox homeostasis;0.00109315986322962!GO:0048500;signal recognition particle;0.00110535716960885!GO:0016197;endosome transport;0.00119010613324604!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00130166722052153!GO:0007059;chromosome segregation;0.00130827335389663!GO:0004576;oligosaccharyl transferase activity;0.00133131637592143!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00133906905810665!GO:0046483;heterocycle metabolic process;0.0013443665439283!GO:0001558;regulation of cell growth;0.0014377464369936!GO:0043681;protein import into mitochondrion;0.00155691285104489!GO:0006402;mRNA catabolic process;0.00169532887138553!GO:0006672;ceramide metabolic process;0.00171241762291724!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00171241762291724!GO:0015399;primary active transmembrane transporter activity;0.00171241762291724!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00176676638883187!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00180513542116989!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00180513542116989!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00180513542116989!GO:0007006;mitochondrial membrane organization and biogenesis;0.00190590787241727!GO:0003678;DNA helicase activity;0.00192998465388151!GO:0005048;signal sequence binding;0.00197405144323136!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00198897563076176!GO:0005885;Arp2/3 protein complex;0.00206582852862115!GO:0008022;protein C-terminus binding;0.00219555311512784!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0022010619763776!GO:0045047;protein targeting to ER;0.0022010619763776!GO:0000922;spindle pole;0.00220906279123487!GO:0008312;7S RNA binding;0.00223046025470264!GO:0006839;mitochondrial transport;0.00226600295729048!GO:0051052;regulation of DNA metabolic process;0.00228245350100389!GO:0030133;transport vesicle;0.00228691674627578!GO:0031124;mRNA 3'-end processing;0.00232051632158436!GO:0004674;protein serine/threonine kinase activity;0.00244619120169831!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00244845353416512!GO:0018196;peptidyl-asparagine modification;0.00248636313187669!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00248636313187669!GO:0006891;intra-Golgi vesicle-mediated transport;0.00251985299895785!GO:0030027;lamellipodium;0.00251985299895785!GO:0031072;heat shock protein binding;0.00252406465448314!GO:0046519;sphingoid metabolic process;0.00264204170666213!GO:0016251;general RNA polymerase II transcription factor activity;0.0026511353868604!GO:0030663;COPI coated vesicle membrane;0.0026511353868604!GO:0030126;COPI vesicle coat;0.0026511353868604!GO:0045449;regulation of transcription;0.00267656973775579!GO:0007040;lysosome organization and biogenesis;0.00271407855495619!GO:0035258;steroid hormone receptor binding;0.00273124276567057!GO:0016853;isomerase activity;0.00274230535940102!GO:0000059;protein import into nucleus, docking;0.00275543963161312!GO:0005876;spindle microtubule;0.0028705682833514!GO:0046474;glycerophospholipid biosynthetic process;0.00289768570850927!GO:0003711;transcription elongation regulator activity;0.00292267528810954!GO:0016126;sterol biosynthetic process;0.00297627571470313!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00297627571470313!GO:0005637;nuclear inner membrane;0.00299209018610203!GO:0046467;membrane lipid biosynthetic process;0.00299225520941268!GO:0005684;U2-dependent spliceosome;0.00306379555132976!GO:0030134;ER to Golgi transport vesicle;0.00310082616875553!GO:0007033;vacuole organization and biogenesis;0.00318782598837159!GO:0030137;COPI-coated vesicle;0.00327957004896015!GO:0046489;phosphoinositide biosynthetic process;0.0033380481077365!GO:0031968;organelle outer membrane;0.0033404535778012!GO:0016044;membrane organization and biogenesis;0.00334731074668239!GO:0007265;Ras protein signal transduction;0.00342297639097509!GO:0051252;regulation of RNA metabolic process;0.00348917829835401!GO:0003684;damaged DNA binding;0.00355648478521323!GO:0015631;tubulin binding;0.00366563555426701!GO:0006310;DNA recombination;0.0038407456015133!GO:0019867;outer membrane;0.00435958781680349!GO:0030029;actin filament-based process;0.00447143166919959!GO:0001726;ruffle;0.00456031120887311!GO:0043624;cellular protein complex disassembly;0.00487980654166814!GO:0048487;beta-tubulin binding;0.00494402508324401!GO:0032508;DNA duplex unwinding;0.00496019543887901!GO:0032392;DNA geometric change;0.00496019543887901!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00509253773963708!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00512072889117014!GO:0006355;regulation of transcription, DNA-dependent;0.00528200967184377!GO:0030127;COPII vesicle coat;0.00530191757283849!GO:0012507;ER to Golgi transport vesicle membrane;0.00530191757283849!GO:0019843;rRNA binding;0.00534937023638204!GO:0030518;steroid hormone receptor signaling pathway;0.00535891135298223!GO:0006695;cholesterol biosynthetic process;0.0053631262189377!GO:0030658;transport vesicle membrane;0.00571908379862738!GO:0006405;RNA export from nucleus;0.00571980157327439!GO:0005791;rough endoplasmic reticulum;0.00582224517380743!GO:0005869;dynactin complex;0.00586049981149873!GO:0003677;DNA binding;0.00596583174162537!GO:0065009;regulation of a molecular function;0.00598035850097797!GO:0031902;late endosome membrane;0.00657617500989475!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00659385092761144!GO:0016584;nucleosome positioning;0.00696545494287366!GO:0006401;RNA catabolic process;0.00724667323418292!GO:0050681;androgen receptor binding;0.00725462389275689!GO:0030880;RNA polymerase complex;0.00756454617136785!GO:0005741;mitochondrial outer membrane;0.00760407616041378!GO:0044452;nucleolar part;0.00762693131823077!GO:0009116;nucleoside metabolic process;0.00806797742468884!GO:0045045;secretory pathway;0.00810628726924313!GO:0005856;cytoskeleton;0.00812079899048665!GO:0051101;regulation of DNA binding;0.00813139759505556!GO:0006650;glycerophospholipid metabolic process;0.00819275635517925!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00830381830311828!GO:0009112;nucleobase metabolic process;0.00837394732018659!GO:0006611;protein export from nucleus;0.0086124062774966!GO:0003746;translation elongation factor activity;0.0088846413883915!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00895205039561643!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00895205039561643!GO:0006818;hydrogen transport;0.00900668171644203!GO:0042802;identical protein binding;0.00906711927900734!GO:0032984;macromolecular complex disassembly;0.00909058551665967!GO:0006268;DNA unwinding during replication;0.00924409721996599!GO:0008139;nuclear localization sequence binding;0.00924409721996599!GO:0015992;proton transport;0.00935690418097069!GO:0031123;RNA 3'-end processing;0.00935969992303658!GO:0043488;regulation of mRNA stability;0.00935969992303658!GO:0043487;regulation of RNA stability;0.00935969992303658!GO:0003702;RNA polymerase II transcription factor activity;0.0093718615461274!GO:0006626;protein targeting to mitochondrion;0.00947246935382742!GO:0030660;Golgi-associated vesicle membrane;0.0097732054124964!GO:0000082;G1/S transition of mitotic cell cycle;0.0100835488340779!GO:0042393;histone binding;0.0103675324863936!GO:0030132;clathrin coat of coated pit;0.0106664196900017!GO:0006144;purine base metabolic process;0.01076252916499!GO:0008097;5S rRNA binding;0.0110477716766646!GO:0008180;signalosome;0.0114572040052447!GO:0043284;biopolymer biosynthetic process;0.0117018456009001!GO:0043492;ATPase activity, coupled to movement of substances;0.0117069886094687!GO:0016741;transferase activity, transferring one-carbon groups;0.0117629483356097!GO:0051539;4 iron, 4 sulfur cluster binding;0.0118679790217058!GO:0016272;prefoldin complex;0.011923019379231!GO:0006338;chromatin remodeling;0.0120033387862927!GO:0008601;protein phosphatase type 2A regulator activity;0.0121583956298081!GO:0030384;phosphoinositide metabolic process;0.0123847804264864!GO:0009165;nucleotide biosynthetic process;0.0123988988610926!GO:0006892;post-Golgi vesicle-mediated transport;0.0124085173224044!GO:0019783;small conjugating protein-specific protease activity;0.0129048154639229!GO:0006497;protein amino acid lipidation;0.0129048154639229!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0131925350864355!GO:0005832;chaperonin-containing T-complex;0.0133048393873228!GO:0008168;methyltransferase activity;0.0134973626515454!GO:0044262;cellular carbohydrate metabolic process;0.0139320486669855!GO:0008234;cysteine-type peptidase activity;0.0142154998291094!GO:0006595;polyamine metabolic process;0.0144081126283482!GO:0007021;tubulin folding;0.0144081126283482!GO:0006289;nucleotide-excision repair;0.0145488221356868!GO:0043241;protein complex disassembly;0.0146919504481598!GO:0050811;GABA receptor binding;0.015130790158455!GO:0042158;lipoprotein biosynthetic process;0.015294603471278!GO:0007034;vacuolar transport;0.0153939206426345!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0153956444389753!GO:0000428;DNA-directed RNA polymerase complex;0.0153956444389753!GO:0004843;ubiquitin-specific protease activity;0.0155500020136598!GO:0000339;RNA cap binding;0.0155915680891843!GO:0005938;cell cortex;0.0159315284499715!GO:0016491;oxidoreductase activity;0.0161029228619218!GO:0040008;regulation of growth;0.0161339430515055!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0168936040132972!GO:0043130;ubiquitin binding;0.0171179129251618!GO:0032182;small conjugating protein binding;0.0171179129251618!GO:0007050;cell cycle arrest;0.017312099313035!GO:0048518;positive regulation of biological process;0.0174813066183703!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0177289394987048!GO:0016408;C-acyltransferase activity;0.0177336521462282!GO:0000049;tRNA binding;0.018180730783503!GO:0006509;membrane protein ectodomain proteolysis;0.018180730783503!GO:0033619;membrane protein proteolysis;0.018180730783503!GO:0045792;negative regulation of cell size;0.018613976661369!GO:0030118;clathrin coat;0.0189919039252805!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0190409146941085!GO:0046983;protein dimerization activity;0.0190557508436435!GO:0030176;integral to endoplasmic reticulum membrane;0.0192582621331775!GO:0006275;regulation of DNA replication;0.0192880227258966!GO:0032200;telomere organization and biogenesis;0.0194071559410373!GO:0000723;telomere maintenance;0.0194071559410373!GO:0030522;intracellular receptor-mediated signaling pathway;0.0194153609244589!GO:0006378;mRNA polyadenylation;0.0194982402757378!GO:0044438;microbody part;0.0194982402757378!GO:0044439;peroxisomal part;0.0194982402757378!GO:0046966;thyroid hormone receptor binding;0.0196451506696067!GO:0006091;generation of precursor metabolites and energy;0.0198342105006385!GO:0008033;tRNA processing;0.0201407712177664!GO:0004221;ubiquitin thiolesterase activity;0.0203358639187025!GO:0043022;ribosome binding;0.0208450066500433!GO:0043596;nuclear replication fork;0.0208511677178134!GO:0006740;NADPH regeneration;0.0208511677178134!GO:0006098;pentose-phosphate shunt;0.0208511677178134!GO:0051087;chaperone binding;0.0208511677178134!GO:0005669;transcription factor TFIID complex;0.0210396843028561!GO:0005875;microtubule associated complex;0.0222573882308519!GO:0000152;nuclear ubiquitin ligase complex;0.0225113255805532!GO:0000228;nuclear chromosome;0.022536564293071!GO:0017166;vinculin binding;0.0230537179368282!GO:0022890;inorganic cation transmembrane transporter activity;0.0232192050599664!GO:0000118;histone deacetylase complex;0.0232379185412264!GO:0004003;ATP-dependent DNA helicase activity;0.0236286539584825!GO:0007004;telomere maintenance via telomerase;0.024190556501717!GO:0022411;cellular component disassembly;0.0242862937643332!GO:0016407;acetyltransferase activity;0.0245346661715624!GO:0006284;base-excision repair;0.0245406778884418!GO:0006376;mRNA splice site selection;0.0245459275493716!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0245459275493716!GO:0043495;protein anchor;0.0246628527110777!GO:0030308;negative regulation of cell growth;0.0247067801951743!GO:0022415;viral reproductive process;0.0249298553872825!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0250133013176834!GO:0015002;heme-copper terminal oxidase activity;0.0250133013176834!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0250133013176834!GO:0004129;cytochrome-c oxidase activity;0.0250133013176834!GO:0000287;magnesium ion binding;0.0257873479211168!GO:0000209;protein polyubiquitination;0.0260722945164273!GO:0006979;response to oxidative stress;0.0261867398085262!GO:0006417;regulation of translation;0.0263769603272412!GO:0051098;regulation of binding;0.0264130909658757!GO:0005774;vacuolar membrane;0.026456170923224!GO:0051272;positive regulation of cell motility;0.0273871801180839!GO:0040017;positive regulation of locomotion;0.0273871801180839!GO:0003779;actin binding;0.0274824822220887!GO:0006270;DNA replication initiation;0.0282413909723823!GO:0022406;membrane docking;0.0282413909723823!GO:0048278;vesicle docking;0.0282413909723823!GO:0007266;Rho protein signal transduction;0.0283938996556988!GO:0000910;cytokinesis;0.0286550083105507!GO:0008610;lipid biosynthetic process;0.0288590369763897!GO:0031903;microbody membrane;0.0290992579233108!GO:0005778;peroxisomal membrane;0.0290992579233108!GO:0007041;lysosomal transport;0.0298781971776361!GO:0004527;exonuclease activity;0.0301519491310979!GO:0033673;negative regulation of kinase activity;0.0306560724120278!GO:0006469;negative regulation of protein kinase activity;0.0306560724120278!GO:0000096;sulfur amino acid metabolic process;0.0311156972385139!GO:0008286;insulin receptor signaling pathway;0.0313619480700714!GO:0007030;Golgi organization and biogenesis;0.031488637212884!GO:0008287;protein serine/threonine phosphatase complex;0.0321928645152497!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0323617244222712!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0323648489215268!GO:0007242;intracellular signaling cascade;0.0326539022737783!GO:0006665;sphingolipid metabolic process;0.0327483524486753!GO:0031529;ruffle organization and biogenesis;0.0329749909059149!GO:0008017;microtubule binding;0.0334086594416086!GO:0051348;negative regulation of transferase activity;0.0339960365994988!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0353290763782609!GO:0016790;thiolester hydrolase activity;0.0355429377871762!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.0360442733797858!GO:0048468;cell development;0.0360442733797858!GO:0047485;protein N-terminus binding;0.0362511118016512!GO:0050839;cell adhesion molecule binding;0.0368226804051997!GO:0009081;branched chain family amino acid metabolic process;0.0375014100974847!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0379190439660889!GO:0016579;protein deubiquitination;0.0379632817575473!GO:0030224;monocyte differentiation;0.038266596405387!GO:0000159;protein phosphatase type 2A complex;0.0384332059337376!GO:0000902;cell morphogenesis;0.0386482390897764!GO:0032989;cellular structure morphogenesis;0.0386482390897764!GO:0008415;acyltransferase activity;0.0387849384984618!GO:0030659;cytoplasmic vesicle membrane;0.0389486832679379!GO:0004177;aminopeptidase activity;0.0391056364473417!GO:0005784;translocon complex;0.0395893253346068!GO:0006007;glucose catabolic process;0.0398229543811051!GO:0042770;DNA damage response, signal transduction;0.0398698340798592!GO:0000725;recombinational repair;0.0398698340798592!GO:0000724;double-strand break repair via homologous recombination;0.0398698340798592!GO:0051338;regulation of transferase activity;0.0403175256973411!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0403793266793576!GO:0017134;fibroblast growth factor binding;0.0404180224508589!GO:0031625;ubiquitin protein ligase binding;0.0404595627816033!GO:0030433;ER-associated protein catabolic process;0.0405520214053329!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0405520214053329!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0407940507719697!GO:0009893;positive regulation of metabolic process;0.0410405200528714!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.0410405200528714!GO:0006661;phosphatidylinositol biosynthetic process;0.0412050548021899!GO:0051128;regulation of cellular component organization and biogenesis;0.0421108118544464!GO:0000792;heterochromatin;0.0421108118544464!GO:0008538;proteasome activator activity;0.0425039598326872!GO:0001725;stress fiber;0.0425039598326872!GO:0032432;actin filament bundle;0.0425039598326872!GO:0005083;small GTPase regulator activity;0.0425039598326872!GO:0006541;glutamine metabolic process;0.0429736934073618!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0429835988750029!GO:0032906;transforming growth factor-beta2 production;0.0435359466250035!GO:0032909;regulation of transforming growth factor-beta2 production;0.0435359466250035!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0435987534575655!GO:0031325;positive regulation of cellular metabolic process;0.0450708315547165!GO:0030508;thiol-disulfide exchange intermediate activity;0.0456036470782597!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0456036470782597!GO:0010257;NADH dehydrogenase complex assembly;0.0456036470782597!GO:0033108;mitochondrial respiratory chain complex assembly;0.0456036470782597!GO:0006778;porphyrin metabolic process;0.0456105314294833!GO:0033013;tetrapyrrole metabolic process;0.0456105314294833!GO:0005680;anaphase-promoting complex;0.0456757379381035!GO:0008047;enzyme activator activity;0.0459738545391873!GO:0030032;lamellipodium biogenesis;0.0468108947578905!GO:0031901;early endosome membrane;0.0470898334352969!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0470898334352969!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0470898334352969!GO:0005521;lamin binding;0.0470898334352969!GO:0016301;kinase activity;0.0470898334352969!GO:0006904;vesicle docking during exocytosis;0.047955215706089!GO:0006950;response to stress;0.0483902395309557!GO:0050790;regulation of catalytic activity;0.0483902395309557!GO:0030119;AP-type membrane coat adaptor complex;0.0486609320161936!GO:0005689;U12-dependent spliceosome;0.0489733265028328!GO:0005811;lipid particle;0.0493144944632071!GO:0007569;cell aging;0.0493144944632071!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0494462517205008 | |||
|sample_id=10425 | |sample_id=10425 | ||
|sample_note=machine failed, remainder reloaded, low amount | |sample_note=machine failed, remainder reloaded, low amount | ||
| Line 76: | Line 99: | ||
|sample_tissue=brain | |sample_tissue=brain | ||
|top_motifs=FOX{I1,J2}:2.00704834059;TFDP1:1.69512399037;OCT4_SOX2{dimer}:1.63716387426;NKX2-3_NKX2-5:1.53225129955;PAX8:1.41026268471;SOX2:1.38565585044;SOX{8,9,10}:1.3606810073;GFI1:1.24478132625;NFIX:1.22908916621;PDX1:1.19077124663;EVI1:1.13759023473;SOX17:1.10818145601;ZIC1..3:1.01814084683;NKX2-1,4:1.01472627711;ONECUT1,2:0.997663353432;E2F1..5:0.985193898563;HOXA9_MEIS1:0.933033773238;MYOD1:0.917808494787;CUX2:0.875840376332;FOX{D1,D2}:0.865472475756;MTE{core}:0.852314903137;POU5F1:0.840949846734;GATA4:0.83200109946;ZBTB6:0.819851080701;POU3F1..4:0.79729193804;FOX{F1,F2,J1}:0.780151371437;EGR1..3:0.762068714588;FOXD3:0.748365181813;LEF1_TCF7_TCF7L1,2:0.748342791699;JUN:0.73918453996;FOXP1:0.690388390161;BPTF:0.666861419075;T:0.665344247642;ZNF384:0.664171956548;ADNP_IRX_SIX_ZHX:0.654792238097;NKX3-1:0.633479435449;PAX5:0.626546846015;TLX1..3_NFIC{dimer}:0.590401838771;HMGA1,2:0.585530607244;MED-1{core}:0.552482740154;HOX{A4,D4}:0.548539273196;LHX3,4:0.535158440519;ELK1,4_GABP{A,B1}:0.496589334085;TEF:0.483332040411;MAZ:0.473721639721;ZNF143:0.472321480812;YY1:0.471554536788;NFE2L2:0.454854718223;MYBL2:0.445611818426;FOS_FOS{B,L1}_JUN{B,D}:0.431957346279;BACH2:0.430175597526;FOSL2:0.428125861469;NFE2:0.417213841706;TEAD1:0.411416441032;MYFfamily:0.404763960101;ATF2:0.384986070062;POU1F1:0.376793427631;SOX5:0.374877536379;MEF2{A,B,C,D}:0.354788275089;TFAP2B:0.350513048495;NFY{A,B,C}:0.341257956824;RBPJ:0.323034976468;SMAD1..7,9:0.321411592724;GTF2I:0.305921468483;NR3C1:0.302011714476;BREu{core}:0.300630266409;HOX{A5,B5}:0.299979038821;MZF1:0.299755370281;HIC1:0.282482968211;GCM1,2:0.265279923068;PBX1:0.259064999129;ATF4:0.251125833191;GTF2A1,2:0.249196555742;XCPE1{core}:0.243465153071;NKX6-1,2:0.240322205832;ALX1:0.237548464006;ZNF423:0.22996014705;HAND1,2:0.221690553218;CDC5L:0.208334888428;MYB:0.195527419287;bHLH_family:0.189223765704;PITX1..3:0.187002609059;ATF5_CREB3:0.182650229269;ZFP161:0.174870143317;PRRX1,2:0.168779946147;NHLH1,2:0.161596554915;RREB1:0.154654383597;SREBF1,2:0.145394719989;TBX4,5:0.137802064537;DBP:0.123367137018;PRDM1:0.122378737104;NRF1:0.118380572497;GFI1B:0.091965243679;CDX1,2,4:0.0746221778628;TFAP2{A,C}:0.0453696854308;STAT5{A,B}:0.0451671971391;NFIL3:0.025931567589;REST:0.0192337291207;FOXO1,3,4:0.011855165853;CRX:0.0044779771968;TOPORS:-0.00435455618698;NKX3-2:-0.0218221495051;NR1H4:-0.0350081487094;DMAP1_NCOR{1,2}_SMARC:-0.0404421681187;POU6F1:-0.0557373355322;XBP1:-0.0630021974146;HNF1A:-0.063279274228;ARID5B:-0.0774344011417;VSX1,2:-0.0846660899387;LMO2:-0.104482127729;CEBPA,B_DDIT3:-0.115790454552;ZBTB16:-0.123304201552;SP1:-0.142962962613;RUNX1..3:-0.143247390564;EN1,2:-0.144867436028;TP53:-0.14665639809;TGIF1:-0.15344298762;HSF1,2:-0.163359255369;TFAP4:-0.17377193;NANOG{mouse}:-0.174382584981;IRF1,2:-0.175325166706;SRF:-0.184916321755;HBP1_HMGB_SSRP1_UBTF:-0.189542481443;MAFB:-0.19695808687;RFX2..5_RFXANK_RFXAP:-0.208030754146;SPZ1:-0.215248207568;PAX1,9:-0.216583542852;PATZ1:-0.218446545737;UFEwm:-0.222210690681;AHR_ARNT_ARNT2:-0.240325995624;CREB1:-0.243145973006;IKZF2:-0.258873892952;PAX2:-0.26653273972;FOXM1:-0.268318066741;IKZF1:-0.274244039784;ESRRA:-0.300797115435;GATA6:-0.314474408445;AR:-0.31783269671;NR6A1:-0.32295974986;NFKB1_REL_RELA:-0.327353256088;RXR{A,B,G}:-0.329597796668;PPARG:-0.334039210374;HNF4A_NR2F1,2:-0.338141959046;FOXP3:-0.343934136798;PAX4:-0.343994468041;SPIB:-0.357962480029;ELF1,2,4:-0.379645948342;EBF1:-0.381292129329;SNAI1..3:-0.399159802921;HLF:-0.402571175982;NFE2L1:-0.408177125299;HIF1A:-0.415982112854;GZF1:-0.424365376976;ZEB1:-0.425995646952;STAT1,3:-0.427281089211;MTF1:-0.428727822313;NANOG:-0.429016586856;IRF7:-0.440401729325;ESR1:-0.447856999349;TFCP2:-0.448445024854;FOXQ1:-0.452945449708;RFX1:-0.459448795594;FOXA2:-0.473339788722;POU2F1..3:-0.473693189848;HMX1:-0.484156894675;RORA:-0.492399731959;ATF6:-0.506425185059;STAT2,4,6:-0.512248375099;TBP:-0.519577312449;HOX{A6,A7,B6,B7}:-0.529205442349;HES1:-0.531428385776;SPI1:-0.548254885383;FOXN1:-0.55713677628;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.570999491697;KLF4:-0.590450344943;ZNF238:-0.590642813924;TLX2:-0.620769215643;NFATC1..3:-0.627958878901;FOXL1:-0.633849148353;ETS1,2:-0.68338598732;NKX2-2,8:-0.692656506454;AIRE:-0.742788053503;PAX6:-0.773908387425;EP300:-0.822791348596;TAL1_TCF{3,4,12}:-0.844203505033;PAX3,7:-0.927197521386;ALX4:-1.06190446236;NR5A1,2:-1.10338700488;ZNF148:-1.13443410528;GLI1..3:-1.32755300632;RXRA_VDR{dimer}:-1.42380658979;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.50066499836 | |top_motifs=FOX{I1,J2}:2.00704834059;TFDP1:1.69512399037;OCT4_SOX2{dimer}:1.63716387426;NKX2-3_NKX2-5:1.53225129955;PAX8:1.41026268471;SOX2:1.38565585044;SOX{8,9,10}:1.3606810073;GFI1:1.24478132625;NFIX:1.22908916621;PDX1:1.19077124663;EVI1:1.13759023473;SOX17:1.10818145601;ZIC1..3:1.01814084683;NKX2-1,4:1.01472627711;ONECUT1,2:0.997663353432;E2F1..5:0.985193898563;HOXA9_MEIS1:0.933033773238;MYOD1:0.917808494787;CUX2:0.875840376332;FOX{D1,D2}:0.865472475756;MTE{core}:0.852314903137;POU5F1:0.840949846734;GATA4:0.83200109946;ZBTB6:0.819851080701;POU3F1..4:0.79729193804;FOX{F1,F2,J1}:0.780151371437;EGR1..3:0.762068714588;FOXD3:0.748365181813;LEF1_TCF7_TCF7L1,2:0.748342791699;JUN:0.73918453996;FOXP1:0.690388390161;BPTF:0.666861419075;T:0.665344247642;ZNF384:0.664171956548;ADNP_IRX_SIX_ZHX:0.654792238097;NKX3-1:0.633479435449;PAX5:0.626546846015;TLX1..3_NFIC{dimer}:0.590401838771;HMGA1,2:0.585530607244;MED-1{core}:0.552482740154;HOX{A4,D4}:0.548539273196;LHX3,4:0.535158440519;ELK1,4_GABP{A,B1}:0.496589334085;TEF:0.483332040411;MAZ:0.473721639721;ZNF143:0.472321480812;YY1:0.471554536788;NFE2L2:0.454854718223;MYBL2:0.445611818426;FOS_FOS{B,L1}_JUN{B,D}:0.431957346279;BACH2:0.430175597526;FOSL2:0.428125861469;NFE2:0.417213841706;TEAD1:0.411416441032;MYFfamily:0.404763960101;ATF2:0.384986070062;POU1F1:0.376793427631;SOX5:0.374877536379;MEF2{A,B,C,D}:0.354788275089;TFAP2B:0.350513048495;NFY{A,B,C}:0.341257956824;RBPJ:0.323034976468;SMAD1..7,9:0.321411592724;GTF2I:0.305921468483;NR3C1:0.302011714476;BREu{core}:0.300630266409;HOX{A5,B5}:0.299979038821;MZF1:0.299755370281;HIC1:0.282482968211;GCM1,2:0.265279923068;PBX1:0.259064999129;ATF4:0.251125833191;GTF2A1,2:0.249196555742;XCPE1{core}:0.243465153071;NKX6-1,2:0.240322205832;ALX1:0.237548464006;ZNF423:0.22996014705;HAND1,2:0.221690553218;CDC5L:0.208334888428;MYB:0.195527419287;bHLH_family:0.189223765704;PITX1..3:0.187002609059;ATF5_CREB3:0.182650229269;ZFP161:0.174870143317;PRRX1,2:0.168779946147;NHLH1,2:0.161596554915;RREB1:0.154654383597;SREBF1,2:0.145394719989;TBX4,5:0.137802064537;DBP:0.123367137018;PRDM1:0.122378737104;NRF1:0.118380572497;GFI1B:0.091965243679;CDX1,2,4:0.0746221778628;TFAP2{A,C}:0.0453696854308;STAT5{A,B}:0.0451671971391;NFIL3:0.025931567589;REST:0.0192337291207;FOXO1,3,4:0.011855165853;CRX:0.0044779771968;TOPORS:-0.00435455618698;NKX3-2:-0.0218221495051;NR1H4:-0.0350081487094;DMAP1_NCOR{1,2}_SMARC:-0.0404421681187;POU6F1:-0.0557373355322;XBP1:-0.0630021974146;HNF1A:-0.063279274228;ARID5B:-0.0774344011417;VSX1,2:-0.0846660899387;LMO2:-0.104482127729;CEBPA,B_DDIT3:-0.115790454552;ZBTB16:-0.123304201552;SP1:-0.142962962613;RUNX1..3:-0.143247390564;EN1,2:-0.144867436028;TP53:-0.14665639809;TGIF1:-0.15344298762;HSF1,2:-0.163359255369;TFAP4:-0.17377193;NANOG{mouse}:-0.174382584981;IRF1,2:-0.175325166706;SRF:-0.184916321755;HBP1_HMGB_SSRP1_UBTF:-0.189542481443;MAFB:-0.19695808687;RFX2..5_RFXANK_RFXAP:-0.208030754146;SPZ1:-0.215248207568;PAX1,9:-0.216583542852;PATZ1:-0.218446545737;UFEwm:-0.222210690681;AHR_ARNT_ARNT2:-0.240325995624;CREB1:-0.243145973006;IKZF2:-0.258873892952;PAX2:-0.26653273972;FOXM1:-0.268318066741;IKZF1:-0.274244039784;ESRRA:-0.300797115435;GATA6:-0.314474408445;AR:-0.31783269671;NR6A1:-0.32295974986;NFKB1_REL_RELA:-0.327353256088;RXR{A,B,G}:-0.329597796668;PPARG:-0.334039210374;HNF4A_NR2F1,2:-0.338141959046;FOXP3:-0.343934136798;PAX4:-0.343994468041;SPIB:-0.357962480029;ELF1,2,4:-0.379645948342;EBF1:-0.381292129329;SNAI1..3:-0.399159802921;HLF:-0.402571175982;NFE2L1:-0.408177125299;HIF1A:-0.415982112854;GZF1:-0.424365376976;ZEB1:-0.425995646952;STAT1,3:-0.427281089211;MTF1:-0.428727822313;NANOG:-0.429016586856;IRF7:-0.440401729325;ESR1:-0.447856999349;TFCP2:-0.448445024854;FOXQ1:-0.452945449708;RFX1:-0.459448795594;FOXA2:-0.473339788722;POU2F1..3:-0.473693189848;HMX1:-0.484156894675;RORA:-0.492399731959;ATF6:-0.506425185059;STAT2,4,6:-0.512248375099;TBP:-0.519577312449;HOX{A6,A7,B6,B7}:-0.529205442349;HES1:-0.531428385776;SPI1:-0.548254885383;FOXN1:-0.55713677628;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.570999491697;KLF4:-0.590450344943;ZNF238:-0.590642813924;TLX2:-0.620769215643;NFATC1..3:-0.627958878901;FOXL1:-0.633849148353;ETS1,2:-0.68338598732;NKX2-2,8:-0.692656506454;AIRE:-0.742788053503;PAX6:-0.773908387425;EP300:-0.822791348596;TAL1_TCF{3,4,12}:-0.844203505033;PAX3,7:-0.927197521386;ALX4:-1.06190446236;NR5A1,2:-1.10338700488;ZNF148:-1.13443410528;GLI1..3:-1.32755300632;RXRA_VDR{dimer}:-1.42380658979;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.50066499836 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10425-106D2;search_select_hide=table117:FF:10425-106D2 | |||
}} | }} | ||
Latest revision as of 14:01, 3 June 2020
| Name: | astrocytoma cell line:TM-31 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10742 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10742
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10742
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.169 |
| 10 | 10 | 0.133 |
| 100 | 100 | 0.687 |
| 101 | 101 | 0.412 |
| 102 | 102 | 0.823 |
| 103 | 103 | 0.7 |
| 104 | 104 | 0.786 |
| 105 | 105 | 0.624 |
| 106 | 106 | 0.19 |
| 107 | 107 | 0.211 |
| 108 | 108 | 0.669 |
| 109 | 109 | 0.0207 |
| 11 | 11 | 0.0754 |
| 110 | 110 | 0.0437 |
| 111 | 111 | 0.0448 |
| 112 | 112 | 0.21 |
| 113 | 113 | 0.0543 |
| 114 | 114 | 0.00534 |
| 115 | 115 | 0.0436 |
| 116 | 116 | 0.372 |
| 117 | 117 | 0.0449 |
| 118 | 118 | 0.163 |
| 119 | 119 | 0.175 |
| 12 | 12 | 0.0397 |
| 120 | 120 | 0.332 |
| 121 | 121 | 0.927 |
| 122 | 122 | 0.811 |
| 123 | 123 | 0.485 |
| 124 | 124 | 0.216 |
| 125 | 125 | 0.928 |
| 126 | 126 | 0.613 |
| 127 | 127 | 0.275 |
| 128 | 128 | 0.225 |
| 129 | 129 | 0.863 |
| 13 | 13 | 0.147 |
| 130 | 130 | 0.229 |
| 131 | 131 | 0.838 |
| 132 | 132 | 0.462 |
| 133 | 133 | 0.952 |
| 134 | 134 | 0.414 |
| 135 | 135 | 0.201 |
| 136 | 136 | 0.845 |
| 137 | 137 | 0.336 |
| 138 | 138 | 0.852 |
| 139 | 139 | 0.0548 |
| 14 | 14 | 0.836 |
| 140 | 140 | 0.774 |
| 141 | 141 | 0.0431 |
| 142 | 142 | 0.695 |
| 143 | 143 | 0.042 |
| 144 | 144 | 0.934 |
| 145 | 145 | 0.847 |
| 146 | 146 | 0.831 |
| 147 | 147 | 0.835 |
| 148 | 148 | 0.168 |
| 149 | 149 | 0.044 |
| 15 | 15 | 0.483 |
| 150 | 150 | 0.912 |
| 151 | 151 | 0.23 |
| 152 | 152 | 0.421 |
| 153 | 153 | 0.985 |
| 154 | 154 | 0.969 |
| 155 | 155 | 0.181 |
| 156 | 156 | 0.211 |
| 157 | 157 | 0.532 |
| 158 | 158 | 0.992 |
| 159 | 159 | 0.465 |
| 16 | 16 | 0.0588 |
| 160 | 160 | 0.109 |
| 161 | 161 | 0.453 |
| 162 | 162 | 0.259 |
| 163 | 163 | 0.666 |
| 164 | 164 | 0.191 |
| 165 | 165 | 0.792 |
| 166 | 166 | 0.41 |
| 167 | 167 | 0.291 |
| 168 | 168 | 0.909 |
| 169 | 169 | 0.018 |
| 17 | 17 | 0.0389 |
| 18 | 18 | 0.391 |
| 19 | 19 | 0.196 |
| 2 | 2 | 0.283 |
| 20 | 20 | 0.862 |
| 21 | 21 | 0.259 |
| 22 | 22 | 0.183 |
| 23 | 23 | 0.24 |
| 24 | 24 | 0.789 |
| 25 | 25 | 0.186 |
| 26 | 26 | 0.204 |
| 27 | 27 | 0.0945 |
| 28 | 28 | 0.248 |
| 29 | 29 | 0.15 |
| 3 | 3 | 0.0532 |
| 30 | 30 | 0.396 |
| 31 | 31 | 0.722 |
| 32 | 32 | 0.00133 |
| 33 | 33 | 0.833 |
| 34 | 34 | 0.672 |
| 35 | 35 | 0.663 |
| 36 | 36 | 0.894 |
| 37 | 37 | 0.151 |
| 38 | 38 | 0.0576 |
| 39 | 39 | 0.302 |
| 4 | 4 | 0.428 |
| 40 | 40 | 0.234 |
| 41 | 41 | 0.756 |
| 42 | 42 | 0.741 |
| 43 | 43 | 0.0918 |
| 44 | 44 | 0.00374 |
| 45 | 45 | 0.871 |
| 46 | 46 | 0.07 |
| 47 | 47 | 0.349 |
| 48 | 48 | 0.131 |
| 49 | 49 | 0.133 |
| 5 | 5 | 0.424 |
| 50 | 50 | 0.964 |
| 51 | 51 | 0.226 |
| 52 | 52 | 0.573 |
| 53 | 53 | 0.909 |
| 54 | 54 | 0.758 |
| 55 | 55 | 0.31 |
| 56 | 56 | 0.941 |
| 57 | 57 | 0.589 |
| 58 | 58 | 0.0873 |
| 59 | 59 | 0.0357 |
| 6 | 6 | 0.65 |
| 60 | 60 | 0.12 |
| 61 | 61 | 0.239 |
| 62 | 62 | 0.068 |
| 63 | 63 | 0.751 |
| 64 | 64 | 0.369 |
| 65 | 65 | 0.0454 |
| 66 | 66 | 0.274 |
| 67 | 67 | 0.425 |
| 68 | 68 | 0.403 |
| 69 | 69 | 0.475 |
| 7 | 7 | 0.352 |
| 70 | 70 | 0.172 |
| 71 | 71 | 0.0528 |
| 72 | 72 | 0.0395 |
| 73 | 73 | 0.107 |
| 74 | 74 | 0.201 |
| 75 | 75 | 0.149 |
| 76 | 76 | 0.356 |
| 77 | 77 | 0.148 |
| 78 | 78 | 0.674 |
| 79 | 79 | 0.0794 |
| 8 | 8 | 0.0455 |
| 80 | 80 | 0.456 |
| 81 | 81 | 0.439 |
| 82 | 82 | 0.249 |
| 83 | 83 | 0.784 |
| 84 | 84 | 0.496 |
| 85 | 85 | 0.159 |
| 86 | 86 | 0.707 |
| 87 | 87 | 0.911 |
| 88 | 88 | 0.963 |
| 89 | 89 | 0.0899 |
| 9 | 9 | 0.108 |
| 90 | 90 | 0.715 |
| 91 | 91 | 0.98 |
| 92 | 92 | 0.112 |
| 93 | 93 | 0.774 |
| 94 | 94 | 0.902 |
| 95 | 95 | 0.0182 |
| 96 | 96 | 0.684 |
| 97 | 97 | 0.936 |
| 98 | 98 | 0.13 |
| 99 | 99 | 0.421 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10742
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100101 astrocytoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000095 (neuron associated cell)
0000243 (glial cell (sensu Vertebrata))
0000128 (oligodendrocyte)
0000126 (macroglial cell)
0000125 (glial cell)
0000255 (eukaryotic cell)
0000127 (astrocyte)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
3093 (nervous system cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100711 (glioma cell line sample)
0100255 (brain cell line sample)
0100690 (brain cancer cell line sample)
0101531 (glial cell line sample)
0100101 (astrocytoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000339 (glioblast (sensu Vertebrata))
CL:0000221 (ectodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006238 (future brain)
UBERON:0010316 (germ layer / neural crest)
