FF:10431-106D8: Difference between revisions

Revision as of 19:19, 10 August 2017

Name:	epidermoid carcinoma cell line:Ca Ski
Species:	Human (Homo sapiens)
Library ID:	CNhs10748
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	NA
tissue	cervix
dev stage	40 year old adult
sex	female
age	40
cell type	unclassifiable
cell line	Ca Ski
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005497

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10748		CAGE		DRX007880		DRR008752

Accession ID Hg19

Library id		BAM		CTSS
CNhs10748		DRZ000177		DRZ001562

Accession ID Hg38

Library id		BAM		CTSS
CNhs10748		DRZ011527		DRZ012912

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

HumanCAGEScan Download raw sequence, BAM & CTSS

Library id		3prime-FASTQ		5prime-FASTQ		BAM		CTSS
NCig10056		download		download		download		download

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.038
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.642
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.101
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0333
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.107
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0.0363
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.269
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.101
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.306
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.714
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.193
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.101
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.0697
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0242
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.00279
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.601
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.054
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.153
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10748

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0168
MA0003.1	MA0003.1	0.0904
MA0004.1	MA0004.1	0.267
MA0006.1	MA0006.1	0.944
MA0007.1	MA0007.1	0.318
MA0009.1	MA0009.1	0.353
MA0014.1	MA0014.1	0.0384
MA0017.1	MA0017.1	0.0738
MA0018.2	MA0018.2	0.102
MA0019.1	MA0019.1	0.73
MA0024.1	MA0024.1	1.29996e-5
MA0025.1	MA0025.1	0.597
MA0027.1	MA0027.1	0.656
MA0028.1	MA0028.1	0.0243
MA0029.1	MA0029.1	0.15
MA0030.1	MA0030.1	0.831
MA0031.1	MA0031.1	0.913
MA0035.2	MA0035.2	0.0898
MA0038.1	MA0038.1	6.84961e-4
MA0039.2	MA0039.2	0.00177
MA0040.1	MA0040.1	0.0484
MA0041.1	MA0041.1	0.291
MA0042.1	MA0042.1	0.111
MA0043.1	MA0043.1	0.162
MA0046.1	MA0046.1	0.674
MA0047.2	MA0047.2	0.483
MA0048.1	MA0048.1	0.128
MA0050.1	MA0050.1	0.695
MA0051.1	MA0051.1	0.828
MA0052.1	MA0052.1	0.917
MA0055.1	MA0055.1	3.93476e-4
MA0057.1	MA0057.1	0.598
MA0058.1	MA0058.1	0.45
MA0059.1	MA0059.1	0.382
MA0060.1	MA0060.1	4.85558e-13
MA0061.1	MA0061.1	0.111
MA0062.2	MA0062.2	0.0122
MA0065.2	MA0065.2	0.35
MA0066.1	MA0066.1	0.197
MA0067.1	MA0067.1	0.887
MA0068.1	MA0068.1	0.23
MA0069.1	MA0069.1	0.681
MA0070.1	MA0070.1	0.453
MA0071.1	MA0071.1	0.21
MA0072.1	MA0072.1	0.908
MA0073.1	MA0073.1	0.764
MA0074.1	MA0074.1	0.422
MA0076.1	MA0076.1	0.041
MA0077.1	MA0077.1	0.221
MA0078.1	MA0078.1	0.622
MA0079.2	MA0079.2	0.605
MA0080.2	MA0080.2	0.0106
MA0081.1	MA0081.1	0.657
MA0083.1	MA0083.1	0.96
MA0084.1	MA0084.1	0.386
MA0087.1	MA0087.1	0.253
MA0088.1	MA0088.1	0.911
MA0090.1	MA0090.1	0.00225
MA0091.1	MA0091.1	0.00425
MA0092.1	MA0092.1	0.213
MA0093.1	MA0093.1	0.279
MA0099.2	MA0099.2	5.95473e-14
MA0100.1	MA0100.1	0.41
MA0101.1	MA0101.1	0.893
MA0102.2	MA0102.2	0.91
MA0103.1	MA0103.1	0.00298
MA0104.2	MA0104.2	0.0164
MA0105.1	MA0105.1	7.68307e-4
MA0106.1	MA0106.1	8.08062e-4
MA0107.1	MA0107.1	0.742
MA0108.2	MA0108.2	0.0297
MA0111.1	MA0111.1	0.821
MA0112.2	MA0112.2	0.00101
MA0113.1	MA0113.1	0.0336
MA0114.1	MA0114.1	0.536
MA0115.1	MA0115.1	0.688
MA0116.1	MA0116.1	0.00701
MA0117.1	MA0117.1	0.881
MA0119.1	MA0119.1	0.458
MA0122.1	MA0122.1	0.842
MA0124.1	MA0124.1	0.173
MA0125.1	MA0125.1	0.0902
MA0131.1	MA0131.1	0.271
MA0135.1	MA0135.1	0.586
MA0136.1	MA0136.1	0.767
MA0137.2	MA0137.2	0.934
MA0138.2	MA0138.2	0.00139
MA0139.1	MA0139.1	0.584
MA0140.1	MA0140.1	0.155
MA0141.1	MA0141.1	0.0808
MA0142.1	MA0142.1	0.792
MA0143.1	MA0143.1	0.37
MA0144.1	MA0144.1	0.984
MA0145.1	MA0145.1	0.176
MA0146.1	MA0146.1	0.559
MA0147.1	MA0147.1	0.0294
MA0148.1	MA0148.1	0.633
MA0149.1	MA0149.1	0.17
MA0150.1	MA0150.1	0.171
MA0152.1	MA0152.1	0.282
MA0153.1	MA0153.1	0.81
MA0154.1	MA0154.1	0.0408
MA0155.1	MA0155.1	0.121
MA0156.1	MA0156.1	0.224
MA0157.1	MA0157.1	0.729
MA0159.1	MA0159.1	0.818
MA0160.1	MA0160.1	0.7
MA0162.1	MA0162.1	0.686
MA0163.1	MA0163.1	0.0162
MA0164.1	MA0164.1	0.849
MA0258.1	MA0258.1	0.00385
MA0259.1	MA0259.1	0.0713

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10748

Novel motif	Logo	P-value
1	1	0.233
10	10	0.615
100	100	0.383
101	101	0.0888
102	102	0.458
103	103	0.402
104	104	0.867
105	105	0.701
106	106	0.0233
107	107	0.411
108	108	0.99
109	109	0.367
11	11	0.0974
110	110	0.922
111	111	0.831
112	112	0.058
113	113	0.257
114	114	0.0771
115	115	0.0669
116	116	0.135
117	117	0.884
118	118	0.534
119	119	0.123
12	12	0.802
120	120	0.997
121	121	0.516
122	122	0.256
123	123	0.355
124	124	0.0417
125	125	0.0852
126	126	0.777
127	127	0.802
128	128	4.90598e-4
129	129	0.892
13	13	0.181
130	130	0.0521
131	131	0.27
132	132	0.74
133	133	0.317
134	134	0.06
135	135	0.00931
136	136	0.0336
137	137	0.0966
138	138	0.867
139	139	0.0296
14	14	0.428
140	140	0.554
141	141	0.808
142	142	0.633
143	143	0.151
144	144	0.0369
145	145	0.588
146	146	0.689
147	147	0.683
148	148	0.264
149	149	0.0302
15	15	0.479
150	150	0.959
151	151	0.446
152	152	0.475
153	153	0.996
154	154	0.654
155	155	0.681
156	156	0.47
157	157	0.716
158	158	0.482
159	159	0.921
16	16	0.569
160	160	0.5
161	161	0.225
162	162	0.758
163	163	0.654
164	164	0.806
165	165	0.497
166	166	0.296
167	167	0.701
168	168	0.666
169	169	0.128
17	17	0.774
18	18	0.126
19	19	0.0247
2	2	0.62
20	20	0.104
21	21	0.634
22	22	0.181
23	23	0.172
24	24	0.267
25	25	0.953
26	26	0.68
27	27	0.081
28	28	0.636
29	29	0.577
3	3	0.23
30	30	0.753
31	31	0.0825
32	32	0.00985
33	33	0.196
34	34	0.168
35	35	0.02
36	36	0.676
37	37	0.24
38	38	0.703
39	39	0.852
4	4	0.722
40	40	0.166
41	41	0.382
42	42	0.604
43	43	0.0912
44	44	0.0978
45	45	0.736
46	46	0.113
47	47	0.413
48	48	0.54
49	49	0.15
5	5	0.0677
50	50	0.351
51	51	0.325
52	52	0.529
53	53	0.503
54	54	0.208
55	55	0.131
56	56	0.599
57	57	0.869
58	58	0.62
59	59	0.0949
6	6	0.408
60	60	0.281
61	61	0.548
62	62	0.241
63	63	0.795
64	64	0.661
65	65	0.042
66	66	0.00264
67	67	0.586
68	68	0.174
69	69	0.594
7	7	0.711
70	70	0.0169
71	71	0.456
72	72	0.276
73	73	0.488
74	74	0.0853
75	75	0.734
76	76	0.815
77	77	0.263
78	78	0.156
79	79	0.00215
8	8	0.165
80	80	0.298
81	81	0.0526
82	82	1.2444e-4
83	83	0.688
84	84	0.741
85	85	0.00118
86	86	0.405
87	87	0.117
88	88	0.908
89	89	0.116
9	9	0.147
90	90	0.103
91	91	0.0745
92	92	0.0428
93	93	0.413
94	94	0.123
95	95	0.113
96	96	0.0458
97	97	0.756
98	98	0.142
99	99	0.895

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10748

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
CL:0002535 epithelial cell of cervix
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102024 squamous cell carcinoma cell line sample
FF:0103109 CaSki cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000255 (eukaryotic cell)
0002535 (epithelial cell of cervix)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
193 (reproductive organ cancer)
305 (carcinoma)
120 (female reproductive organ cancer)
1749 (squamous cell carcinoma)
4362 (cervical cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000002 (uterine cervix)
0000995 (uterus)
0000483 (epithelium)
0003134 (female reproductive organ)
0000479 (tissue)
0001560 (neck of organ)
0005156 (reproductive structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0006955 (uterine epithelium)
0004801 (cervix epithelium)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0102024 (squamous cell carcinoma cell line sample)
0101120 (epithelial cell line sample)
0101967 (cervical cancer cell line sample)
0103109 (CaSki cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005497
-|accession_numbers=CAGE;DRX007880;DRR008752;DRZ000177;DRZ001562
+|HumanCAGEScanFiles=NCig10056;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/epidermoid%2520carcinoma%2520cell%2520line%253aCa%2520Ski.NCig10056.10431-106D8.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/epidermoid%2520carcinoma%2520cell%2520line%253aCa%2520Ski.NCig10056.10431-106D8.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/epidermoid%2520carcinoma%2520cell%2520line%253aCa%2520Ski.NCig10056.10431-106D8.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/epidermoid%2520carcinoma%2520cell%2520line%253aCa%2520Ski.NCig10056.10431-106D8.hg19.GCTATA.pairs.bed.gz
+|accession_numbers=CAGE;DRX007880;DRR008752;DRZ000177;DRZ001562;DRZ011527;DRZ012912
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000002,UBERON:0000995,UBERON:0000483,UBERON:0003134,UBERON:0000479,UBERON:0001560,UBERON:0005156,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0006955,UBERON:0004801,UBERON:0003100,UBERON:0000474
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0000255,CL:0002535
@@ Line 9: / Line 10: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.25!175.60!EHF;;chr17:7493405..7493419,-!p1@SOX15!2.15!139.99!SOX15;;chr1:209979467..209979494,-!p1@IRF6!2.12!144.78!IRF6;;chr6:10415484..10415508,-!p3@TFAP2A!1.86!70.87!TFAP2A;;chr1:209979411..209979433,-!p2@IRF6!1.77!58.07!IRF6;;chr1:201979743..201979762,+!p1@ELF3!1.62!40.66!ELF3;;chr8:10588010..10588030,-!p1@SOX7!1.61!39.96!SOX7;;chr20:56100179..56100208,-!p1@CTCFL!1.58!36.83!CTCFL;;chr6:10415276..10415341,-!p2@TFAP2A!1.56!42.75!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.52!52.67!TFAP2A;;chr11:34645791..34645836,+!p3@EHF!1.50!30.82!EHF;;chr1:6479968..6479986,-!p1@HES2!1.46!27.68!HES2;;chr5:1882170..1882182,-!p3@IRX4!1.46!27.60!IRX4;;chr3:189507432..189507459,+!p1@TP63!1.44!26.73!TP63;;chr2:114036488..114036504,-!p1@PAX8!1.43!26.20!PAX8;;chr1:201979703..201979721,+!p2@ELF3!1.42!25.16!ELF3;;chr8:102504651..102504683,+!p1@GRHL2!1.41!24.90!GRHL2;;chr11:34642656..34642667,+!p2@EHF!1.41!24.64!EHF;;chr5:1882184..1882203,-!p4@IRX4!1.39!23.68!IRX4;;chr17:7492684..7492778,-!p2@SOX15!1.38!48.06!SOX15;;chr2:176969228..176969260,+!p1@HOXD11!1.38!22.81!HOXD11;;chr15:83953397..83953425,-!p1@BNC1!1.35!24.55!BNC1;;chr3:111314186..111314204,-!p1@ZBED2!1.29!18.46!ZBED2;;chr11:65667884..65667895,-!p2@FOSL1!1.24!63.12!FOSL1;;chr13:73633131..73633149,+!p1@KLF5!1.21!159.93!KLF5;;chr17:7197911..7197964,-!p1@YBX2!1.20!14.80!YBX2;;chr20:55204351..55204377,+!p1@TFAP2C!1.16!17.06!TFAP2C;;chr2:176969179..176969226,+!p2@HOXD11!1.16!13.58!HOXD11;;chr20:50721803..50721857,-!p2@ZFP64!1.14!20.11!ZFP64;;chr3:169381420..169381535,-!p1@MECOM!1.14!15.06!MECOM;;chr17:46682321..46682362,-!p1@HOXB6!1.13!12.62!HOXB6;;chr17:8027418..8027432,-!p1@HES7!1.13!12.62!HES7;;chr11:65667846..65667868,-!p1@FOSL1!1.09!299.48!FOSL1;;chr2:45236540..45236577,-!p1@SIX2!1.08!11.14!SIX2;;chr14:37131058..37131139,+!p1@PAX9!1.08!10.97!PAX9;;chr7:27205106..27205134,-!p2@HOXA9!1.08!10.97!HOXA9;;chr10:8096631..8096660,+!p1@GATA3!1.05!12.36!GATA3;;chr11:65668011..65668020,-!p3@FOSL1!1.05!10.27!FOSL1;;chr19:45908292..45908374,-!p1@PPP1R13L!1.04!89.50!PPP1R13L;;chr17:46687959..46688007,-!p2@HOXB7!1.04!13.76!HOXB7;;chr20:42295713..42295738,+!p2@MYBL2!1.02!57.11!MYBL2;;chr11:65686732..65686756,+!p2@DRAP1!1.02!40.40!DRAP1;;chr6:126240380..126240430,+!p2@NCOA7!1.02!25.16!NCOA7;;chr11:65686802..65686818,+!p6@DRAP1!1.01!16.45!DRAP1;;chr6:45390300..45390335,+!p4@RUNX2!1.01!14.54!RUNX2;;chr6:10413188..10413249,-!p7@TFAP2A!1.00!9.05!TFAP2A;;chr2:238592039..238592054,+!p4@LRRFIP1!1.00!9.05!LRRFIP1;;chr12:54785074..54785122,-!p2@ZNF385A!0.99!13.76!ZNF385A;;chr14:55493763..55493824,-!p1@WDHD1!0.98!65.73!WDHD1;;chr22:24093154..24093183,-!p2@ZNF70!0.98!8.53!ZNF70;;chr8:102504979..102505010,+!p2@GRHL2!0.98!8.44!GRHL2;;chr20:42295745..42295765,+!p1@MYBL2!0.97!141.12!MYBL2;;chr12:27485762..27485776,+!p3@ARNTL2!0.97!22.98!ARNTL2;;chr6:10419768..10419819,-!p6@TFAP2A!0.97!8.36!TFAP2A;;chr6:10412576..10412599,-!p5@TFAP2A!0.96!8.10!TFAP2A;;chr17:70117153..70117174,+!p1@SOX9!0.95!83.58!SOX9;;chr2:46524897..46524911,+!p2@EPAS1!0.95!22.64!EPAS1;;chr9:124976154..124976177,-!p5@LHX6!0.94!7.75!LHX6;;chr19:48773337..48773339,+!p2@ZNF114!0.94!7.75!ZNF114;;chr8:99956662..99956684,+!p1@OSR2!0.93!11.67!OSR2;;chr17:38020392..38020477,-!p1@IKZF3!0.93!7.57!IKZF3;;chr7:27205136..27205164,-!p1@HOXA9!0.92!7.40!HOXA9;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!0.92!7.31!ZBED1;;chr1:209979375..209979386,-!p4@IRF6!0.92!7.23!IRF6;;chr15:67418119..67418162,+!p5@SMAD3!0.91!8.01!SMAD3;;chr9:124976185..124976212,-!p4@LHX6!0.91!7.14!LHX6;;chr17:41277372..41277418,-!p1@BRCA1!0.90!26.03!BRCA1;;chr6:45390025..45390076,+!p2@RUNX2!0.90!17.15!RUNX2;;chr3:168864315..168864339,-!p2@MECOM!0.90!11.84!MECOM;;chr10:8096772..8096787,+!p2@GATA3!0.90!8.27!GATA3;;chr6:10412392..10412409,-!p4@TFAP2A!0.90!7.92!TFAP2A;;chr14:61116183..61116208,-!p1@SIX1!0.89!26.99!SIX1;;chr12:80084737..80084763,-!p3@PAWR!0.89!26.64!PAWR;;chr6:45390269..45390298,+!p5@RUNX2!0.89!11.58!RUNX2;;chr2:176969124..176969155,+!p5@HOXD11!0.89!6.79!HOXD11;;chr7:27196267..27196311,-!p1@HOXA7!0.89!6.70!HOXA7;;chr17:46688334..46688385,-!p1@HOXB7!0.88!9.75!HOXB7;;chr6:1389789..1389821,+!p1@FOXF2!0.88!9.32!FOXF2;;chr6:126240442..126240459,+!p4@NCOA7!0.88!8.44!NCOA7;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!0.87!6.44!EN2;;chr5:2751762..2751784,-!p1@IRX2!0.87!6.36!IRX2;;chr7:27153454..27153469,-!p2@HOXA3!0.87!6.36!HOXA3;;chr11:47236584..47236679,+!p1@DDB2!0.86!73.04!DDB2;;chr6:45390002..45390023,+!p6@RUNX2!0.85!10.97!RUNX2;;chr6:28048343..28048354,+!p1@ZNF165!0.85!6.09!ZNF165;;chr9:100615499..100615519,+!p1@FOXE1!0.85!6.09!FOXE1;;chr17:48072574..48072597,-!p1@DLX3!0.85!6.01!DLX3;;chr10:51572408..51572454,+!p3@NCOA4!0.84!36.39!NCOA4;;chr1:158979872..158979898,+!p3@IFI16!0.84!19.07!IFI16;;chr2:172967621..172967637,-!p1@DLX2!0.83!16.28!DLX2;;chr14:38064429..38064486,-!p1@FOXA1!0.83!5.83!FOXA1;;chr6:10419824..10419840,-!p9@TFAP2A!0.83!5.83!TFAP2A;;chr21:36421535..36421610,-!p2@RUNX1!0.82!21.50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@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
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+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/epidermoid%2520carcinoma%2520cell%2520line%253aCa%2520Ski.CNhs10748.10431-106D8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/epidermoid%2520carcinoma%2520cell%2520line%253aCa%2520Ski.CNhs10748.10431-106D8.hg38.nobarcode.ctss.bed.gz
 |id=FF:10431-106D8
 |is_a=CL:0002535;;EFO:0002091;;FF:0000210;;FF:0102024;;FF:0103109
 |is_obsolete=
 |library_id=CNhs10748
-|library_id_phase_based=1:CNhs10748
+|library_id_phase_based=2:CNhs10748
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10431
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10431
 |name=epidermoid carcinoma cell line:Ca Ski
 |namespace=FANTOM5
@@ Line 51: / Line 61: @@
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FF:10431-106D8: Difference between revisions

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Revision as of 19:19, 10 August 2017

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