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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004732
|accession_numbers=CAGE;DRX007871;DRR008743;DRZ000168;DRZ001553;DRZ011518;DRZ012903
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002113,UBERON:0002100,UBERON:0000062,UBERON:0000475,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0005177,UBERON:0005172,UBERON:0005173,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0000916
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002113,UBERON:0002100,UBERON:0000062,UBERON:0000475,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0005177,UBERON:0005172,UBERON:0005173,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0000916
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chrX:84498989..84499003,+!p1@ZNF711!2.45!377.84!ZNF711;;chr7:27205136..27205164,-!p1@HOXA9!1.92!81.91!HOXA9;;chr7:27213893..27213954,-!p1@HOXA10!1.54!33.80!HOXA10;;chr17:46703687..46703740,-!p1@HOXB9!1.54!33.59!HOXB9;;chr8:80679993..80680011,-!p1@HEY1!1.48!41.89!HEY1;;chr12:54393880..54393962,+!p1@HOXC9!1.47!28.31!HOXC9;;chr7:27224842..27224872,-!p1@HOXA11!1.43!25.82!HOXA11;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.38!22.92!HOXC5;;chr6:10412600..10412637,-!p1@TFAP2A!1.37!36.91!TFAP2A;;chr2:172967621..172967637,-!p1@DLX2!1.36!57.86!DLX2;;chr7:27192185..27192209,-!p1@HOXA3!1.36!21.88!HOXA3;;chr2:176969228..176969260,+!p1@HOXD11!1.30!19.18!HOXD11;;chr7:27205106..27205134,-!p2@HOXA9!1.26!17.32!HOXA9;;chr7:27179814..27179840,-!p4@HOXA3!1.26!17.11!HOXA3;;chr5:134369905..134369972,-!p1@PITX1!1.24!24.89!PITX1;;chr6:1389789..1389821,+!p1@FOXF2!1.24!22.19!FOXF2;;chr18:19749541..19749557,+!p1@GATA6!1.23!50.08!GATA6;;chr17:46667594..46667619,-!p1@HOXB3!1.22!15.76!HOXB3;;chr6:10415276..10415341,-!p2@TFAP2A!1.21!18.66!TFAP2A;;chr7:27224795..27224840,-!p2@HOXA11!1.21!15.14!HOXA11;;chr6:19837592..19837621,+!p1@ID4!1.20!89.17!ID4;;chr14:38064429..38064486,-!p1@FOXA1!1.20!14.83!FOXA1;;chr8:25902876..25902936,-!p1@EBF2!1.19!14.62!EBF2;;chr20:42295713..42295738,+!p2@MYBL2!1.18!82.02!MYBL2;;chr2:176969179..176969226,+!p2@HOXD11!1.18!14.10!HOXD11;;chr17:46682321..46682362,-!p1@HOXB6!1.18!14.00!HOXB6;;chr5:172662197..172662216,-!p1@NKX2-5!1.17!13.79!NKX2-5;;chr6:21597765..21597779,+!p2@SOX4!1.16!108.56!SOX4;;chr6:10412392..10412409,-!p4@TFAP2A!1.16!15.45!TFAP2A;;chr8:11561684..11561751,+!p1@GATA4!1.16!13.58!GATA4;;chr7:27183263..27183284,-!p2@HOXA5!1.14!12.86!HOXA5;;chr20:42295745..42295765,+!p1@MYBL2!1.10!190.16!MYBL2;;chr15:76629123..76629151,+!p1@ISL2!1.09!12.44!ISL2;;chr6:20402102..20402152,+!p1@E2F3!1.08!45.62!E2F3;;chr14:37131058..37131139,+!p1@PAX9!1.08!11.09!PAX9;;chr17:46622070..46622109,-!p1@HOXB2!1.07!24.37!HOXB2;;chr6:1610293..1610310,+!p1@FOXC1!1.07!18.25!FOXC1;;chr2:176972000..176972025,+!p4@HOXD11!1.07!10.68!HOXD11;;chr13:72441315..72441454,-!p1@DACH1!1.06!21.05!DACH1;;chr21:38071430..38071456,+!p1@SIM2!1.05!10.16!SIM2;;chr16:29818160..29818188,+!p6@MAZ!1.04!47.18!MAZ;;chr6:126070769..126070801,+!p1@HEY2!1.04!11.41!HEY2;;chr5:72744594..72744609,-!p1@FOXD1!1.02!44.38!FOXD1;;chr2:200322654..200322707,-!p2@SATB2!1.02!13.79!SATB2;;chr7:27183291..27183324,-!p1@HOXA5!1.02!9.44!HOXA5;;chr12:85673977..85674015,+!p1@ALX1!1.01!9.33!ALX1;;chr2:223163706..223163730,-!p1@PAX3!1.01!9.23!PAX3;;chr1:3569072..3569093,+!p1@TP73!1.01!9.12!TP73;;chr7:27239703..27239715,-!p1@HOXA13!1.01!9.12!HOXA13;;chr16:29818199..29818216,+!p11@MAZ!0.99!14.52!MAZ;;chr1:935467..935484,-!p1@HES4!0.98!39.19!HES4;;chr14:61116183..61116208,-!p1@SIX1!0.97!32.25!SIX1;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!0.97!8.40!EN2;;chr17:46675558..46675577,-!p2@HOXB6!0.97!8.30!HOXB6;;chr6:21593973..21593988,+!p1@SOX4!0.96!299.87!SOX4;;chr2:172949484..172949522,+!p1@DLX1!0.93!7.57!DLX1;;chr22:19748231..19748317,+!p1@TBX1!0.92!7.36!TBX1;;chr14:29235961..29236008,+!p1@FOXG1!0.92!7.36!FOXG1;;chr10:102891048..102891078,+!p1@TLX1!0.92!7.26!TLX1;;chr19:23433144..23433204,-!p1@ZNF724P!0.91!33.59!ZNF724P;;chr2:176969097..176969109,+!p3@HOXD11!0.91!7.05!HOXD11;;chr12:54332608..54332636,+!p1@HOXC13!0.91!7.05!HOXC13;;chr7:35293685..35293718,-!p1@TBX20!0.90!6.95!TBX20;;chr19:21264991..21265026,+!p1@ZNF714!0.89!46.87!ZNF714;;chr1:935496..935509,-!p3@HES4!0.89!10.47!HES4;;chr2:172950227..172950249,+!p2@DLX1!0.89!6.84!DLX1;;chr13:100623375..100623425,-!p1@ZIC5!0.89!6.74!ZIC5;;chr16:29819403..29819442,+!p5@MAZ!0.88!56.72!MAZ;;chr16:54320101..54320125,-!p4@IRX3!0.88!9.54!IRX3;;chr21:38071403..38071428,+!p2@SIM2!0.88!6.64!SIM2;;chr16:51185172..51185197,-!p1@SALL1!0.88!6.53!SALL1;;chr1:23857698..23857733,-!p1@E2F2!0.86!11.72!E2F2;;chr13:100638100..100638115,+!p4@ZIC2!0.86!6.32!ZIC2;;chr7:27153454..27153469,-!p2@HOXA3!0.86!6.22!HOXA3;;chr7:28448965..28448994,+!p2@CREB5!0.85!22.60!CREB5;;chr19:24097675..24097699,+!p1@ZNF726!0.85!21.46!ZNF726;;chr6:85473156..85473210,-!p2@TBX18!0.85!7.57!TBX18;;chr6:1612300..1612324,+!p3@FOXC1!0.85!6.12!FOXC1;;chr11:31832658..31832681,-!p1@PAX6!0.85!6.12!PAX6;;chr9:129376201..129376225,+!p1@LMX1B!0.84!5.91!LMX1B;;chr6:85474299..85474324,-!p1@TBX18!0.83!10.68!TBX18;;chr18:19749517..19749531,+!p3@GATA6!0.83!10.68!GATA6;;chr5:134369879..134369898,-!p2@PITX1!0.83!5.81!PITX1;;chr7:27239740..27239759,-!p2@HOXA13!0.83!5.81!HOXA13;;chr1:40105299..40105326,-!p1@HEYL!0.83!5.70!HEYL;;chr11:129245736..129245758,+!p2@BARX2!0.83!5.70!BARX2;;chr2:60780607..60780624,-!p2@BCL11A!0.82!18.25!BCL11A;;chr5:174151553..174151610,+!p1@MSX2!0.82!9.64!MSX2;;chr17:46622205..46622218,-!p3@HOXB2!0.82!6.64!HOXB2;;chr17:35294075..35294102,+!p1@ENST00000559335!0.82!5.60!LHX1;;chr18:55102598..55102623,+!p1@ONECUT2!0.82!5.60!ONECUT2;;chr13:100634031..100634045,+!p1@ZIC2!0.82!5.60!ZIC2;;chr19:22034809..22034878,-!p2@ZNF43!0.81!20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|expression_enrichment_score=chrX:84498989..84499003,+!p1@ZNF711!2.45!377.84!ZNF711;;chr7:27205136..27205164,-!p1@HOXA9!1.92!81.91!HOXA9;;chr7:27213893..27213954,-!p1@HOXA10!1.54!33.80!HOXA10;;chr17:46703687..46703740,-!p1@HOXB9!1.54!33.59!HOXB9;;chr8:80679993..80680011,-!p1@HEY1!1.48!41.89!HEY1;;chr12:54393880..54393962,+!p1@HOXC9!1.47!28.31!HOXC9;;chr7:27224842..27224872,-!p1@HOXA11!1.43!25.82!HOXA11;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.38!22.92!HOXC5;;chr6:10412600..10412637,-!p1@TFAP2A!1.37!36.91!TFAP2A;;chr2:172967621..172967637,-!p1@DLX2!1.36!57.86!DLX2;;chr7:27192185..27192209,-!p1@HOXA3!1.36!21.88!HOXA3;;chr2:176969228..176969260,+!p1@HOXD11!1.30!19.18!HOXD11;;chr7:27205106..27205134,-!p2@HOXA9!1.26!17.32!HOXA9;;chr7:27179814..27179840,-!p4@HOXA3!1.26!17.11!HOXA3;;chr5:134369905..134369972,-!p1@PITX1!1.24!24.89!PITX1;;chr6:1389789..1389821,+!p1@FOXF2!1.24!22.19!FOXF2;;chr18:19749541..19749557,+!p1@GATA6!1.23!50.08!GATA6;;chr17:46667594..46667619,-!p1@HOXB3!1.22!15.76!HOXB3;;chr6:10415276..10415341,-!p2@TFAP2A!1.21!18.66!TFAP2A;;chr7:27224795..27224840,-!p2@HOXA11!1.21!15.14!HOXA11;;chr6:19837592..19837621,+!p1@ID4!1.20!89.17!ID4;;chr14:38064429..38064486,-!p1@FOXA1!1.20!14.83!FOXA1;;chr8:25902876..25902936,-!p1@EBF2!1.19!14.62!EBF2;;chr20:42295713..42295738,+!p2@MYBL2!1.18!82.02!MYBL2;;chr2:176969179..176969226,+!p2@HOXD11!1.18!14.10!HOXD11;;chr17:46682321..46682362,-!p1@HOXB6!1.18!14.00!HOXB6;;chr5:172662197..172662216,-!p1@NKX2-5!1.17!13.79!NKX2-5;;chr6:21597765..21597779,+!p2@SOX4!1.16!108.56!SOX4;;chr6:10412392..10412409,-!p4@TFAP2A!1.16!15.45!TFAP2A;;chr8:11561684..11561751,+!p1@GATA4!1.16!13.58!GATA4;;chr7:27183263..27183284,-!p2@HOXA5!1.14!12.86!HOXA5;;chr20:42295745..42295765,+!p1@MYBL2!1.10!190.16!MYBL2;;chr15:76629123..76629151,+!p1@ISL2!1.09!12.44!ISL2;;chr6:20402102..20402152,+!p1@E2F3!1.08!45.62!E2F3;;chr14:37131058..37131139,+!p1@PAX9!1.08!11.09!PAX9;;chr17:46622070..46622109,-!p1@HOXB2!1.07!24.37!HOXB2;;chr6:1610293..1610310,+!p1@FOXC1!1.07!18.25!FOXC1;;chr2:176972000..176972025,+!p4@HOXD11!1.07!10.68!HOXD11;;chr13:72441315..72441454,-!p1@DACH1!1.06!21.05!DACH1;;chr21:38071430..38071456,+!p1@SIM2!1.05!10.16!SIM2;;chr16:29818160..29818188,+!p6@MAZ!1.04!47.18!MAZ;;chr6:126070769..126070801,+!p1@HEY2!1.04!11.41!HEY2;;chr5:72744594..72744609,-!p1@FOXD1!1.02!44.38!FOXD1;;chr2:200322654..200322707,-!p2@SATB2!1.02!13.79!SATB2;;chr7:27183291..27183324,-!p1@HOXA5!1.02!9.44!HOXA5;;chr12:85673977..85674015,+!p1@ALX1!1.01!9.33!ALX1;;chr2:223163706..223163730,-!p1@PAX3!1.01!9.23!PAX3;;chr1:3569072..3569093,+!p1@TP73!1.01!9.12!TP73;;chr7:27239703..27239715,-!p1@HOXA13!1.01!9.12!HOXA13;;chr16:29818199..29818216,+!p11@MAZ!0.99!14.52!MAZ;;chr1:935467..935484,-!p1@HES4!0.98!39.19!HES4;;chr14:61116183..61116208,-!p1@SIX1!0.97!32.25!SIX1;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!0.97!8.40!EN2;;chr17:46675558..46675577,-!p2@HOXB6!0.97!8.30!HOXB6;;chr6:21593973..21593988,+!p1@SOX4!0.96!299.87!SOX4;;chr2:172949484..172949522,+!p1@DLX1!0.93!7.57!DLX1;;chr22:19748231..19748317,+!p1@TBX1!0.92!7.36!TBX1;;chr14:29235961..29236008,+!p1@FOXG1!0.92!7.36!FOXG1;;chr10:102891048..102891078,+!p1@TLX1!0.92!7.26!TLX1;;chr19:23433144..23433204,-!p1@ZNF724P!0.91!33.59!ZNF724P;;chr2:176969097..176969109,+!p3@HOXD11!0.91!7.05!HOXD11;;chr12:54332608..54332636,+!p1@HOXC13!0.91!7.05!HOXC13;;chr7:35293685..35293718,-!p1@TBX20!0.90!6.95!TBX20;;chr19:21264991..21265026,+!p1@ZNF714!0.89!46.87!ZNF714;;chr1:935496..935509,-!p3@HES4!0.89!10.47!HES4;;chr2:172950227..172950249,+!p2@DLX1!0.89!6.84!DLX1;;chr13:100623375..100623425,-!p1@ZIC5!0.89!6.74!ZIC5;;chr16:29819403..29819442,+!p5@MAZ!0.88!56.72!MAZ;;chr16:54320101..54320125,-!p4@IRX3!0.88!9.54!IRX3;;chr21:38071403..38071428,+!p2@SIM2!0.88!6.64!SIM2;;chr16:51185172..51185197,-!p1@SALL1!0.88!6.53!SALL1;;chr1:23857698..23857733,-!p1@E2F2!0.86!11.72!E2F2;;chr13:100638100..100638115,+!p4@ZIC2!0.86!6.32!ZIC2;;chr7:27153454..27153469,-!p2@HOXA3!0.86!6.22!HOXA3;;chr7:28448965..28448994,+!p2@CREB5!0.85!22.60!CREB5;;chr19:24097675..24097699,+!p1@ZNF726!0.85!21.46!ZNF726;;chr6:85473156..85473210,-!p2@TBX18!0.85!7.57!TBX18;;chr6:1612300..1612324,+!p3@FOXC1!0.85!6.12!FOXC1;;chr11:31832658..31832681,-!p1@PAX6!0.85!6.12!PAX6;;chr9:129376201..129376225,+!p1@LMX1B!0.84!5.91!LMX1B;;chr6:85474299..85474324,-!p1@TBX18!0.83!10.68!TBX18;;chr18:19749517..19749531,+!p3@GATA6!0.83!10.68!GATA6;;chr5:134369879..134369898,-!p2@PITX1!0.83!5.81!PITX1;;chr7:27239740..27239759,-!p2@HOXA13!0.83!5.81!HOXA13;;chr1:40105299..40105326,-!p1@HEYL!0.83!5.70!HEYL;;chr11:129245736..129245758,+!p2@BARX2!0.83!5.70!BARX2;;chr2:60780607..60780624,-!p2@BCL11A!0.82!18.25!BCL11A;;chr5:174151553..174151610,+!p1@MSX2!0.82!9.64!MSX2;;chr17:46622205..46622218,-!p3@HOXB2!0.82!6.64!HOXB2;;chr17:35294075..35294102,+!p1@ENST00000559335!0.82!5.60!LHX1;;chr18:55102598..55102623,+!p1@ONECUT2!0.82!5.60!ONECUT2;;chr13:100634031..100634045,+!p1@ZIC2!0.82!5.60!ZIC2;;chr19:22034809..22034878,-!p2@ZNF43!0.81!20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|ffid_belonging_in_development=UBERON:0003104,UBERON:0003918,UBERON:0007687
|fonse_cell_line=FF:0100067,FF:0100669
|fonse_cell_line=FF:0100067,FF:0100669
|fonse_cell_line_closure=FF:0100067,FF:0100669
|fonse_cell_line_closure=FF:0100067,FF:0100669
Line 37: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/embryonic%2520kidney%2520cell%2520line%253a%2520HEK293%252fSLAM%2520untreated.CNhs11046.10450-106F9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/embryonic%2520kidney%2520cell%2520line%253a%2520HEK293%252fSLAM%2520untreated.CNhs11046.10450-106F9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/embryonic%2520kidney%2520cell%2520line%253a%2520HEK293%252fSLAM%2520untreated.CNhs11046.10450-106F9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/embryonic%2520kidney%2520cell%2520line%253a%2520HEK293%252fSLAM%2520untreated.CNhs11046.10450-106F9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/embryonic%2520kidney%2520cell%2520line%253a%2520HEK293%252fSLAM%2520untreated.CNhs11046.10450-106F9.hg38.nobarcode.ctss.bed.gz
|id=FF:10450-106F9
|id=FF:10450-106F9
|is_a=EFO:0002091;;FF:0000210;;FF:0100007
|is_a=EFO:0002091;;FF:0000210;;FF:0100007
|is_obsolete=
|is_obsolete=
|library_id=CNhs11046
|library_id_phase_based=2:CNhs11046
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10450
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10450
|name=embryonic kidney cell line: HEK293/SLAM untreated
|name=embryonic kidney cell line: HEK293/SLAM untreated
|namespace=FANTOM5
|namespace=FANTOM5
Line 45: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11046,LSID722,release008,COMPLETED
|profile_hcage=CNhs11046,LSID722,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
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Line 60: Line 78:
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|sample_cell_line=HEK293/SLAM
Line 81: Line 100:
|top_motifs=NFY{A,B,C}:2.1422752617;ELK1,4_GABP{A,B1}:2.07548768772;PBX1:1.98441211122;ZNF143:1.89685421509;NRF1:1.7949280853;E2F1..5:1.79473676367;YY1:1.65408128404;STAT1,3:1.42955822231;TFDP1:1.34163519796;BREu{core}:1.32017998609;T:1.25495466155;HOX{A6,A7,B6,B7}:1.22943163287;POU1F1:1.21173581083;NKX2-1,4:1.1557700143;GFI1:1.14672320441;NANOG:1.13479338708;ONECUT1,2:1.11312766564;HOX{A5,B5}:1.07073223799;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.02334985177;IKZF1:1.01629735213;RBPJ:1.00668628399;PRRX1,2:0.96820274344;EN1,2:0.949445147226;NKX2-3_NKX2-5:0.892374160939;PITX1..3:0.887306116012;FOX{I1,J2}:0.8481596504;HOXA9_MEIS1:0.840336991577;ATF4:0.78319181678;MYB:0.780695807354;TEF:0.71443346952;CDC5L:0.708047879547;CDX1,2,4:0.701537617144;ZEB1:0.677559507709;CRX:0.650051429422;bHLH_family:0.644731759113;SOX{8,9,10}:0.607695146438;STAT5{A,B}:0.606936304961;FOXQ1:0.590482366705;NFIX:0.587659814707;LHX3,4:0.564744177264;NR5A1,2:0.535090222853;GFI1B:0.534980202718;HOX{A4,D4}:0.519277518344;FOXP1:0.47764545225;PDX1:0.466983915074;GZF1:0.460527753046;EVI1:0.445885589912;LEF1_TCF7_TCF7L1,2:0.435124623378;SOX17:0.431012859752;ADNP_IRX_SIX_ZHX:0.423046646222;VSX1,2:0.417063847381;SNAI1..3:0.413356298706;POU6F1:0.411554623706;FOXM1:0.387778287199;RFX1:0.386350493546;FOXA2:0.382574921047;HBP1_HMGB_SSRP1_UBTF:0.375580673773;ZNF384:0.337978354959;FOXD3:0.312520429027;NKX6-1,2:0.302652451906;OCT4_SOX2{dimer}:0.241374676943;ZNF148:0.221307993658;XCPE1{core}:0.215316763891;FOX{F1,F2,J1}:0.208173373759;RORA:0.192086385185;PAX6:0.188930067558;RFX2..5_RFXANK_RFXAP:0.187682733161;PAX8:0.149698124727;LMO2:0.147968720044;CUX2:0.1381195863;NFE2L1:0.130336654627;AHR_ARNT_ARNT2:0.119681975643;DBP:0.1101448676;HIC1:0.105076133688;POU5F1:0.056293032914;AIRE:0.05348378341;HSF1,2:0.0494760043247;TP53:0.04943935151;HNF1A:0.0467188152955;HNF4A_NR2F1,2:0.043736786761;PAX4:0.0434819468517;ZFP161:0.0410109775281;SP1:0.0349953703024;MZF1:-0.00688494351797;ATF2:-0.0186985592431;POU3F1..4:-0.0228709955141;GATA6:-0.0311391210857;GTF2A1,2:-0.0521131964004;ALX1:-0.0643757601977;TFAP2B:-0.0750119090893;REST:-0.0832321755229;ATF5_CREB3:-0.0980918040683;NR6A1:-0.098384124837;ELF1,2,4:-0.101502698468;PAX5:-0.11978431154;SOX5:-0.125529308958;JUN:-0.151178856561;NKX2-2,8:-0.157242106053;MED-1{core}:-0.158281247199;SREBF1,2:-0.171380243071;MYBL2:-0.186675424652;SOX2:-0.196852093787;PAX1,9:-0.20298492059;PAX2:-0.209631555324;MEF2{A,B,C,D}:-0.210800260776;PPARG:-0.216065552001;HAND1,2:-0.228972560545;FOXL1:-0.250369378537;FOXO1,3,4:-0.252602890359;POU2F1..3:-0.255695409856;ZBTB16:-0.257875016313;TGIF1:-0.261368341225;NFE2L2:-0.267848125954;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.279091299895;MYOD1:-0.288808966252;IKZF2:-0.288856113062;EGR1..3:-0.29095224366;ARID5B:-0.320792939822;FOS_FOS{B,L1}_JUN{B,D}:-0.322338970544;TBX4,5:-0.326273980971;TBP:-0.329200327278;UFEwm:-0.338952628222;PAX3,7:-0.342677084907;GATA4:-0.342845698499;TOPORS:-0.344471004022;XBP1:-0.349637588293;BACH2:-0.367578918805;NHLH1,2:-0.373202097255;HIF1A:-0.403649579598;HES1:-0.407580877666;GTF2I:-0.407822189882;PATZ1:-0.411640053049;NFE2:-0.415407521715;NANOG{mouse}:-0.429297006309;ZIC1..3:-0.436929701588;FOXP3:-0.43783287425;TLX1..3_NFIC{dimer}:-0.445356813517;GCM1,2:-0.454940907705;HLF:-0.457350986221;ESR1:-0.466484233565;SPI1:-0.477379258114;NFKB1_REL_RELA:-0.479756917536;PRDM1:-0.494225305314;SPIB:-0.522686048488;NKX3-2:-0.533013114794;NR1H4:-0.53356085075;FOXN1:-0.539276853522;ZBTB6:-0.544206785817;AR:-0.544367740046;RXR{A,B,G}:-0.552763241877;ATF6:-0.55970953969;FOSL2:-0.565931806593;KLF4:-0.581236876045;CREB1:-0.583108240225;NR3C1:-0.590320820565;MYFfamily:-0.595325116285;BPTF:-0.60433489642;FOX{D1,D2}:-0.612434112039;DMAP1_NCOR{1,2}_SMARC:-0.656067810127;RUNX1..3:-0.65790719977;MAZ:-0.669738076228;MTE{core}:-0.686396950027;EBF1:-0.715796324586;NFIL3:-0.723623300353;TEAD1:-0.734159964138;NKX3-1:-0.755919363799;MTF1:-0.799645741431;RREB1:-0.813692053823;IRF7:-0.81565908615;ESRRA:-0.818515210875;ETS1,2:-0.863651484685;ZNF238:-0.903144815885;TFAP2{A,C}:-0.919264108121;CEBPA,B_DDIT3:-0.951371311393;EP300:-1.0097062061;ZNF423:-1.04690316977;MAFB:-1.06920503908;ALX4:-1.15549282829;SPZ1:-1.18959083403;TAL1_TCF{3,4,12}:-1.19783252451;SRF:-1.21819207021;TFCP2:-1.29792062678;IRF1,2:-1.32336345931;STAT2,4,6:-1.33790783467;NFATC1..3:-1.37026201996;GLI1..3:-1.39155921003;SMAD1..7,9:-1.39927413391;TFAP4:-1.41870886979;HMGA1,2:-1.62513959152;HMX1:-1.62660487255;TLX2:-1.66748177089;RXRA_VDR{dimer}:-1.9273946171
|top_motifs=NFY{A,B,C}:2.1422752617;ELK1,4_GABP{A,B1}:2.07548768772;PBX1:1.98441211122;ZNF143:1.89685421509;NRF1:1.7949280853;E2F1..5:1.79473676367;YY1:1.65408128404;STAT1,3:1.42955822231;TFDP1:1.34163519796;BREu{core}:1.32017998609;T:1.25495466155;HOX{A6,A7,B6,B7}:1.22943163287;POU1F1:1.21173581083;NKX2-1,4:1.1557700143;GFI1:1.14672320441;NANOG:1.13479338708;ONECUT1,2:1.11312766564;HOX{A5,B5}:1.07073223799;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.02334985177;IKZF1:1.01629735213;RBPJ:1.00668628399;PRRX1,2:0.96820274344;EN1,2:0.949445147226;NKX2-3_NKX2-5:0.892374160939;PITX1..3:0.887306116012;FOX{I1,J2}:0.8481596504;HOXA9_MEIS1:0.840336991577;ATF4:0.78319181678;MYB:0.780695807354;TEF:0.71443346952;CDC5L:0.708047879547;CDX1,2,4:0.701537617144;ZEB1:0.677559507709;CRX:0.650051429422;bHLH_family:0.644731759113;SOX{8,9,10}:0.607695146438;STAT5{A,B}:0.606936304961;FOXQ1:0.590482366705;NFIX:0.587659814707;LHX3,4:0.564744177264;NR5A1,2:0.535090222853;GFI1B:0.534980202718;HOX{A4,D4}:0.519277518344;FOXP1:0.47764545225;PDX1:0.466983915074;GZF1:0.460527753046;EVI1:0.445885589912;LEF1_TCF7_TCF7L1,2:0.435124623378;SOX17:0.431012859752;ADNP_IRX_SIX_ZHX:0.423046646222;VSX1,2:0.417063847381;SNAI1..3:0.413356298706;POU6F1:0.411554623706;FOXM1:0.387778287199;RFX1:0.386350493546;FOXA2:0.382574921047;HBP1_HMGB_SSRP1_UBTF:0.375580673773;ZNF384:0.337978354959;FOXD3:0.312520429027;NKX6-1,2:0.302652451906;OCT4_SOX2{dimer}:0.241374676943;ZNF148:0.221307993658;XCPE1{core}:0.215316763891;FOX{F1,F2,J1}:0.208173373759;RORA:0.192086385185;PAX6:0.188930067558;RFX2..5_RFXANK_RFXAP:0.187682733161;PAX8:0.149698124727;LMO2:0.147968720044;CUX2:0.1381195863;NFE2L1:0.130336654627;AHR_ARNT_ARNT2:0.119681975643;DBP:0.1101448676;HIC1:0.105076133688;POU5F1:0.056293032914;AIRE:0.05348378341;HSF1,2:0.0494760043247;TP53:0.04943935151;HNF1A:0.0467188152955;HNF4A_NR2F1,2:0.043736786761;PAX4:0.0434819468517;ZFP161:0.0410109775281;SP1:0.0349953703024;MZF1:-0.00688494351797;ATF2:-0.0186985592431;POU3F1..4:-0.0228709955141;GATA6:-0.0311391210857;GTF2A1,2:-0.0521131964004;ALX1:-0.0643757601977;TFAP2B:-0.0750119090893;REST:-0.0832321755229;ATF5_CREB3:-0.0980918040683;NR6A1:-0.098384124837;ELF1,2,4:-0.101502698468;PAX5:-0.11978431154;SOX5:-0.125529308958;JUN:-0.151178856561;NKX2-2,8:-0.157242106053;MED-1{core}:-0.158281247199;SREBF1,2:-0.171380243071;MYBL2:-0.186675424652;SOX2:-0.196852093787;PAX1,9:-0.20298492059;PAX2:-0.209631555324;MEF2{A,B,C,D}:-0.210800260776;PPARG:-0.216065552001;HAND1,2:-0.228972560545;FOXL1:-0.250369378537;FOXO1,3,4:-0.252602890359;POU2F1..3:-0.255695409856;ZBTB16:-0.257875016313;TGIF1:-0.261368341225;NFE2L2:-0.267848125954;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.279091299895;MYOD1:-0.288808966252;IKZF2:-0.288856113062;EGR1..3:-0.29095224366;ARID5B:-0.320792939822;FOS_FOS{B,L1}_JUN{B,D}:-0.322338970544;TBX4,5:-0.326273980971;TBP:-0.329200327278;UFEwm:-0.338952628222;PAX3,7:-0.342677084907;GATA4:-0.342845698499;TOPORS:-0.344471004022;XBP1:-0.349637588293;BACH2:-0.367578918805;NHLH1,2:-0.373202097255;HIF1A:-0.403649579598;HES1:-0.407580877666;GTF2I:-0.407822189882;PATZ1:-0.411640053049;NFE2:-0.415407521715;NANOG{mouse}:-0.429297006309;ZIC1..3:-0.436929701588;FOXP3:-0.43783287425;TLX1..3_NFIC{dimer}:-0.445356813517;GCM1,2:-0.454940907705;HLF:-0.457350986221;ESR1:-0.466484233565;SPI1:-0.477379258114;NFKB1_REL_RELA:-0.479756917536;PRDM1:-0.494225305314;SPIB:-0.522686048488;NKX3-2:-0.533013114794;NR1H4:-0.53356085075;FOXN1:-0.539276853522;ZBTB6:-0.544206785817;AR:-0.544367740046;RXR{A,B,G}:-0.552763241877;ATF6:-0.55970953969;FOSL2:-0.565931806593;KLF4:-0.581236876045;CREB1:-0.583108240225;NR3C1:-0.590320820565;MYFfamily:-0.595325116285;BPTF:-0.60433489642;FOX{D1,D2}:-0.612434112039;DMAP1_NCOR{1,2}_SMARC:-0.656067810127;RUNX1..3:-0.65790719977;MAZ:-0.669738076228;MTE{core}:-0.686396950027;EBF1:-0.715796324586;NFIL3:-0.723623300353;TEAD1:-0.734159964138;NKX3-1:-0.755919363799;MTF1:-0.799645741431;RREB1:-0.813692053823;IRF7:-0.81565908615;ESRRA:-0.818515210875;ETS1,2:-0.863651484685;ZNF238:-0.903144815885;TFAP2{A,C}:-0.919264108121;CEBPA,B_DDIT3:-0.951371311393;EP300:-1.0097062061;ZNF423:-1.04690316977;MAFB:-1.06920503908;ALX4:-1.15549282829;SPZ1:-1.18959083403;TAL1_TCF{3,4,12}:-1.19783252451;SRF:-1.21819207021;TFCP2:-1.29792062678;IRF1,2:-1.32336345931;STAT2,4,6:-1.33790783467;NFATC1..3:-1.37026201996;GLI1..3:-1.39155921003;SMAD1..7,9:-1.39927413391;TFAP4:-1.41870886979;HMGA1,2:-1.62513959152;HMX1:-1.62660487255;TLX2:-1.66748177089;RXRA_VDR{dimer}:-1.9273946171
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10450-106F9;search_select_hide=table117:FF:10450-106F9
}}
}}

Latest revision as of 14:03, 3 June 2020

Name:embryonic kidney cell line: HEK293/SLAM untreated
Species:Human (Homo sapiens)
Library ID:CNhs11046
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuekidney
dev stageNA
sexNA
ageNA
cell typeunclassifiable
cell lineHEK293/SLAM
companyNA
collaborationChieko Kai (University of Tokyo)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004732
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11046 CAGE DRX007871 DRR008743
Accession ID Hg19

Library idBAMCTSS
CNhs11046 DRZ000168 DRZ001553
Accession ID Hg38

Library idBAMCTSS
CNhs11046 DRZ011518 DRZ012903
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0124
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.608
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.00643
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0809
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.088
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0.0428
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0861
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0857
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.403
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.00655
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0478
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.631
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11046

Jaspar motifP-value
MA0002.28.80609e-4
MA0003.10.142
MA0004.10.511
MA0006.10.528
MA0007.10.547
MA0009.10.723
MA0014.10.519
MA0017.10.0289
MA0018.20.0948
MA0019.10.198
MA0024.19.30818e-7
MA0025.10.287
MA0027.10.683
MA0028.18.57692e-5
MA0029.10.0783
MA0030.10.663
MA0031.10.762
MA0035.20.0436
MA0038.10.00286
MA0039.20.429
MA0040.10.206
MA0041.10.471
MA0042.10.348
MA0043.10.0376
MA0046.10.759
MA0047.20.511
MA0048.10.367
MA0050.11.98326e-9
MA0051.12.79814e-4
MA0052.10.0272
MA0055.10.0739
MA0057.10.353
MA0058.10.357
MA0059.10.478
MA0060.12.08438e-26
MA0061.10.00829
MA0062.21.24569e-5
MA0065.20.0822
MA0066.10.119
MA0067.10.56
MA0068.10.0293
MA0069.10.44
MA0070.10.0242
MA0071.10.842
MA0072.10.0644
MA0073.10.54
MA0074.10.515
MA0076.11.92399e-6
MA0077.10.563
MA0078.10.297
MA0079.20.557
MA0080.21.89772e-9
MA0081.10.229
MA0083.10.0178
MA0084.10.211
MA0087.10.745
MA0088.10.0406
MA0090.10.0122
MA0091.10.00597
MA0092.10.0771
MA0093.10.357
MA0099.22.11164e-7
MA0100.10.307
MA0101.10.203
MA0102.20.00368
MA0103.10.576
MA0104.20.108
MA0105.10.00136
MA0106.10.701
MA0107.10.0378
MA0108.20.25
MA0111.10.625
MA0112.23.09033e-5
MA0113.10.159
MA0114.10.313
MA0115.10.645
MA0116.10.0127
MA0117.10.789
MA0119.10.112
MA0122.10.496
MA0124.10.53
MA0125.10.107
MA0131.10.282
MA0135.10.716
MA0136.10.00361
MA0137.20.801
MA0138.20.064
MA0139.10.819
MA0140.10.0616
MA0141.10.293
MA0142.10.464
MA0143.10.284
MA0144.10.0308
MA0145.10.0688
MA0146.10.128
MA0147.10.19
MA0148.10.32
MA0149.10.726
MA0150.10.00344
MA0152.10.393
MA0153.10.604
MA0154.10.0141
MA0155.10.124
MA0156.10.591
MA0157.10.917
MA0159.10.0496
MA0160.10.321
MA0162.10.159
MA0163.10.0125
MA0164.10.873
MA0258.10.00224
MA0259.10.268



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11046

Novel motifP-value
10.22
100.528
1000.41
1010.717
1020.818
1030.167
1040.688
1050.406
1062.11687e-4
1070.0294
1080.653
1090.211
110.156
1100.383
1110.747
1120.0173
1130.17
1140.0202
1150.972
1160.674
1170.567
1180.482
1190.0995
120.852
1200.953
1210.918
1220.506
1230.285
1240.478
1250.7
1260.56
1270.239
1280.0213
1290.611
130.854
1300.0541
1310.263
1320.52
1330.267
1340.628
1356.3029e-4
1360.159
1370.157
1380.237
1390.0415
140.577
1400.293
1410.529
1420.769
1430.339
1440.409
1450.344
1460.851
1470.191
1480.25
1490.0165
150.275
1500.472
1510.186
1520.0222
1530.379
1540.556
1550.957
1560.816
1570.444
1580.445
1590.637
160.291
1600.467
1610.779
1620.769
1630.313
1640.104
1650.787
1660.49
1670.322
1680.0605
1690.00668
170.107
180.0956
190.0769
20.171
200.381
210.456
220.102
230.00131
240.94
250.873
260.415
270.0789
280.981
290.648
30.175
300.523
310.544
320.00603
330.874
340.268
350.522
360.875
370.151
380.349
390.523
40.157
400.83
410.391
420.741
430.127
440.451
450.403
460.1
470.512
480.457
490.373
50.278
500.645
510.23
520.143
530.403
540.231
550.0637
560.659
570.362
580.274
590.077
60.89
600.0194
610.838
620.0936
630.173
640.601
650.0345
668.32558e-4
670.77
680.726
690.696
70.797
700.00719
710.302
720.198
730.081
740.811
750.417
760.854
770.142
780.823
790.0694
80.37
800.0528
810.414
820.0127
830.118
840.702
850.00188
860.442
870.469
880.56
890.0783
90.077
900.485
910.0399
920.0246
930.501
940.012
950.511
960.083
971
980.237
990.73



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11046


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002113 (kidney)
0002100 (trunk)
0000062 (organ)
0000475 (organism subdivision)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0005177 (trunk region element)
0005172 (abdomen element)
0005173 (abdominal segment element)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100067 (kidney cell line sample)
0102733 (embryonic kidney cell line sample)
0100669 (embryonic cell line sample)
0100007 (HEK-293 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0003104 (mesenchyme)
UBERON:0003918 (kidney mesenchyme)
UBERON:0007687 (kidney field)