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{{f5samples
 
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002113,UBERON:0002100,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0003103,UBERON:0009569,UBERON:0005291,UBERON:0000489,UBERON:0005177,UBERON:0003104,UBERON:0005172,UBERON:0003918,UBERON:0006598,UBERON:0005173,UBERON:0002532,UBERON:0001008,UBERON:0002417,UBERON:0000916,UBERON:0009142,UBERON:0006603,UBERON:0005095,UBERON:0007687
+
|DRA_sample_Accession=CAGE@SAMD00004939
 +
|accession_numbers=CAGE;DRX007795;DRR008667;DRZ000092;DRZ001477;DRZ011442;DRZ012827
 +
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000062,UBERON:0000475,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0005177,UBERON:0005172,UBERON:0005173,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0000916
 
|ancestors_in_cell_lineage_facet=
 
|ancestors_in_cell_lineage_facet=
 
|ancestors_in_disease_facet=DOID:4,DOID:7
 
|ancestors_in_disease_facet=DOID:4,DOID:7
 +
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100067,FF:0103192
 
|comment=
 
|comment=
 
|created_by=
 
|created_by=
 
|creation_date=
 
|creation_date=
 +
|data_phase=2
 +
|datafreeze_phase=2
 
|def=
 
|def=
 
|expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!2.29!194.42!SOX17;;chr17:41739283..41739297,-!p1@MEOX1!2.09!121.27!MEOX1;;chr18:55102598..55102623,+!p1@ONECUT2!1.92!82.77!ONECUT2;;chr18:55102628..55102646,+!p2@ONECUT2!1.83!66.41!ONECUT2;;chr20:42543441..42543497,+!p1@TOX2!1.80!265.64!TOX2;;chr6:126070769..126070801,+!p1@HEY2!1.69!54.86!HEY2;;chr13:73633131..73633149,+!p1@KLF5!1.63!417.72!KLF5;;chr20:50721803..50721857,-!p2@ZFP64!1.59!58.71!ZFP64;;chr19:47523058..47523114,+!p1@NPAS1!1.59!37.54!NPAS1;;chr20:42543506..42543549,+!p2@TOX2!1.50!71.22!TOX2;;chr5:56248032..56248039,-!p3@MIER3!1.50!30.80!MIER3;;chr20:31350184..31350200,+!p1@DNMT3B!1.46!56.79!DNMT3B;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.46!27.91!SEBOX;;chr20:50418128..50418147,-!p2@SALL4!1.43!25.99!SALL4;;chr11:12696071..12696086,+!p3@TEAD1!1.38!29.84!TEAD1;;chr17:41622765..41622821,-!p2@ETV4!1.36!32.72!ETV4;;chr9:14314131..14314147,-!p2@NFIB!1.29!102.02!NFIB;;chr18:53255415..53255491,-!p1@TCF4!1.26!143.41!TCF4;;chr10:70320074..70320106,+!p1@TET1!1.25!33.69!TET1;;chr10:28034739..28034756,-!p1@MKX!1.24!16.36!MKX;;chr10:28034772..28034783,-!p4@MKX!1.24!16.36!MKX;;chr11:12696102..12696113,+!p5@TEAD1!1.24!16.36!TEAD1;;chr8:40755333..40755352,-!p1@ZMAT4!1.24!16.36!ZMAT4;;chr13:74708029..74708077,-!p2@KLF12!1.23!45.24!KLF12;;chr1:47903709..47903764,+!p1@BC169308!1.23!18.29!FOXD2;;chr19:19729477..19729542,-!p1@PBX4!1.21!32.72!PBX4;;chr13:100623375..100623425,-!p1@ZIC5!1.21!15.40!ZIC5;;chr9:129376201..129376225,+!p1@LMX1B!1.21!15.40!LMX1B;;chr1:935467..935484,-!p1@HES4!1.20!65.45!HES4;;chr8:123793988..123794016,+!p1@ZHX2!1.17!24.06!ZHX2;;chr8:77596014..77596033,+!p6@ZFHX4!1.16!13.47!ZFHX4;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.13!12.51!SEBOX;;chr9:14314106..14314119,-!p5@NFIB!1.12!22.14!NFIB;;chr18:52989565..52989623,-!p9@TCF4!1.12!15.40!TCF4;;chr7:63505799..63505904,+!p1@ZNF727!1.10!11.55!ZNF727;;chr22:19748231..19748317,+!p1@TBX1!1.10!11.55!TBX1;;chr11:706938..707008,-!p3@DEAF1!1.07!13.47!DEAF1;;chr19:33793430..33793447,-!p1@CEBPA!1.04!42.35!CEBPA;;chr18:52989031..52989079,-!p2@TCF4!1.03!23.10!TCF4;;chr16:79633894..79633954,-!p3@MAF!1.02!18.29!MAF;;chr2:200323414..200323455,-!p1@SATB2!1.01!20.21!SATB2;;chr12:125052112..125052172,-!p2@NCOR2!1.00!83.74!NCOR2;;chr10:76585205..76585251,+!p3@KAT6B!1.00!20.21!KAT6B;;chrX:84498989..84499003,+!p1@ZNF711!1.00!12.51!ZNF711;;chr12:111471526..111471541,+!p1@CUX2!0.99!8.66!CUX2;;chr13:72441074..72441172,-!p2@DACH1!0.99!8.66!DACH1;;chr17:41739036..41739040,-!p5@MEOX1!0.99!8.66!MEOX1;;chr2:10183651..10183713,+!p1@KLF11!0.98!64.49!KLF11;;chr8:86089417..86089440,+!p2@E2F5!0.96!16.36!E2F5;;chr1:935398..935465,-!p2@HES4!0.94!16.36!HES4;;chr19:57183114..57183145,-!p1@ZNF835!0.94!8.66!ZNF835;;chr18:52989001..52989030,-!p10@TCF4!0.94!8.66!TCF4;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!0.94!7.70!SEBOX;;chr17:41622731..41622764,-!p5@ETV4!0.94!7.70!ETV4;;chr15:60884706..60884743,-!p1@RORA!0.92!39.46!RORA;;chr20:32274179..32274213,-!p1@E2F1!0.91!49.09!E2F1;;chr11:12696002..12696022,+!p2@TEAD1!0.91!18.29!TEAD1;;chr6:41514078..41514158,+!p1@FOXP4!0.90!66.41!FOXP4;;chr16:30537839..30537929,-!p1@ZNF768!0.89!44.27!ZNF768;;chr18:53068911..53068935,-!p4@TCF4!0.89!7.70!TCF4;;chr2:25565329..25565342,-!p6@DNMT3A!0.89!7.70!DNMT3A;;chr20:50418906..50418924,-!p6@SALL4!0.89!6.74!SALL4;;chr20:50418972..50419029,-!p1@SALL4!0.89!6.74!SALL4;;chr20:50721788..50721799,-!p8@ZFP64!0.89!6.74!ZFP64;;chrY:21906594..21906622,-!p1@KDM5D!0.89!6.74!KDM5D;;chr16:69599899..69599919,+!p2@NFAT5!0.88!78.92!NFAT5;;chr16:79634624..79634642,-!p1@MAF!0.88!26.95!MAF;;chr15:80696703..80696754,+!p1@ARNT2!0.87!8.66!ARNT2;;chr1:23885981..23886002,-!p1@ID3!0.86!1162.68!ID3;;chr18:53254566..53254567,-!p8@TCF4!0.86!10.59!TCF4;;chr1:61548225..61548299,+!p1@NFIA!0.85!85.66!NFIA;;chr5:134369905..134369972,-!p1@PITX1!0.85!9.62!PITX1;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.84!63.52!GLIS2;;chr2:239148671..239148686,-!p1@HES6!0.84!23.10!HES6;;chr2:71127699..71127744,+!p1@VAX2!0.83!12.51!VAX2;;chr5:178157700..178157734,-!p3@ZNF354A!0.83!12.51!ZNF354A;;chr17:41623009..41623053,-!p4@ETV4!0.83!9.62!ETV4;;chr17:41623259..41623278,-!p7@ETV4!0.83!6.74!ETV4;;chr19:50832869..50832882,+!p6@NR1H2!0.83!5.77!NR1H2;;chr19:50832895..50832928,+!p3@NR1H2!0.83!5.77!NR1H2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.83!5.77!PEG3;;chr19:57352109..57352153,-!p2@ZIM2!0.83!5.77!ZIM2;;chr21:34442540..34442560,+!p2@OLIG1!0.83!5.77!OLIG1;;chr13:73632897..73632923,+!p12@KLF5!0.83!5.77!KLF5;;chr14:33403881..33403924,+!p1@NPAS3!0.83!5.77!NPAS3;;chrY:2803415..2803468,+!p1@ZFY!0.83!5.77!ZFY;;chr5:134369879..134369898,-!p2@PITX1!0.83!5.77!PITX1;;chr7:156803329..156803362,-!p1@MNX1!0.83!5.77!MNX1;;chr7:35293685..35293718,-!p1@TBX20!0.83!5.77!TBX20;;chr3:141121820..141121838,+!p9@ZBTB38!0.83!5.77!ZBTB38;;chr8:128748308..128748324,+!p2@MYC!0.82!166.51!MYC;;chr19:46272462..46272562,-!p1@SIX5!0.82!25.02!SIX5;;chr17:41622925..41622976,-!p3@ETV4!0.82!8.66!ETV4;;chr6:1261022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p10@CREB3L1!0.29!0.96!CREB3L1;;chr11:47400062..47400077,-!p2@SPI1!0.29!0.96!SPI1;;chr11:64073314..64073351,+!p5@ESRRA!0.29!0.96!ESRRA;;chr11:65430617..65430624,-!p8@RELA!0.29!0.96!RELA;;chr11:76092029..76092038,-!p4@PRKRIR!0.29!0.96!PRKRIR;;chr12:108154309..108154359,-!p6@PRDM4!0.29!0.96!PRDM4;;chr12:10875548..10875563,-!p13@CSDA!0.29!0.96!CSDA;;chr12:24102576..24102623,-!p2@SOX5!0.29!0.96!SOX5;;chr12:3068668..3068689,+!p7@TEAD4!0.29!0.96!TEAD4;;chr12:3068709..3068717,+!p14@TEAD4!0.29!0.96!TEAD4;;chr12:3068979..3068993,+!p11@TEAD4!0.29!0.96!TEAD4;;chr12:52430835..52430843,+!p17@NR4A1!0.29!0.96!NR4A1;;chr12:52449834..52449859,+!p16@NR4A1!0.29!0.96!NR4A1;;chr12:54378864..54378884,+!p6@HOXC10!0.29!0.96!HOXC10;;chr12:54378923..54378966,+!p1@HOXC10!0.29!0.96!HOXC10;;chr12:54379066..54379073,+!p11@HOXC10!0.29!0.96!HOXC10;;chr12:54379136..54379150,+!p4@HOXC5!0.29!0.96!HOXC5;;chr12:54379915..54379935,+!p8@HOXC10!0.29!0.96!HOXC10;;chr12:54380036..54380091,+!p4@HOXC10!0.29!0.96!HOXC10;;chr12:54380404..54380433,+!p3@HOXC10!0.29!0.96!HOXC10;;chr12:54402729..54402743,+!p3@HOXC8!0.29!0.96!HOXC8;;chr12:54402745..54402788,+!p1@HOXC8!0.29!0.96!HOXC8;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.29!0.96!HOXC5;;chr12:57853596..57853613,+!p3@GLI1!0.29!0.96!GLI1;;chr12:57853634..57853662,+!p2@GLI1!0.29!0.96!GLI1;;chr12:57917037..57917052,+!p9@MBD6!0.29!0.96!MBD6;;chr12:66218923..66218934,+!p14@HMGA2!0.29!0.96!HMGA2;;chr12:80084120..80084136,-!p15@PAWR!0.29!0.96!PAWR;;chr12:95467222..95467233,-!p3@NR2C1!0.29!0.96!NR2C1;;chr13:100623360..100623373,-!p2@ZIC5!0.29!0.96!ZIC5;;chr13:100634004..100634025,+!p2@ZIC2!0.29!0.96!ZIC2;;chr13:72440583..72440605,-!p10@DACH1!0.29!0.96!DACH1;;chr13:72440693..72440706,-!p15@DACH1!0.29!0.96!DACH1;;chr13:72440772..72440847,-!p5@DACH1!0.29!0.96!DACH1;;chr13:72441047..72441060,-!p11@DACH1!0.29!0.96!DACH1;;chr13:95364784..95364806,-!p1@SOX21!0.29!0.96!SOX21;;chr14:105267423..105267443,+!p2@ZBTB42!0.29!0.96!ZBTB42;;chr14:21994525..21994547,-!p4@SALL2!0.29!0.96!SALL2;;chr14:33403648..33403710,+!p3@NPAS3!0.29!0.96!NPAS3;;chr14:33403860..33403874,+!p5@NPAS3!0.29!0.96!NPAS3;;chr14:33403930..33403943,+!p7@NPAS3!0.29!0.96!NPAS3;;chr14:35874077..35874091,-!p8@NFKBIA!0.29!0.96!NFKBIA;;chr14:35874125..35874149,-!p11@NFKBIA!0.29!0.96!NFKBIA;;chr14:61190359..61190385,-!p4@SIX4!0.29!0.96!SIX4;;chr19:38720356..38720369,-!p4@DPF1!0.29!0.96!DPF1;;chr19:44100672..44100683,+!p3@ZNF576!0.29!0.96!ZNF576;;chr19:46801639..46801699,+!p1@HIF3A!0.29!0.96!HIF3A;;chr19:47523040..47523049,+!p3@NPAS1!0.29!0.96!NPAS1;;chr19:49140279..49140302,-!p10@DBP!0.29!0.96!DBP;;chr19:49140658..49140667,-!p8@DBP!0.29!0.96!DBP;;chr19:50435673..50435690,+!p8@ATF5!0.29!0.96!ATF5;;chr19:52408192..52408200,-!p4@ZNF649!0.29!0.96!ZNF649;;chr19:54024313..54024361,+!p7@ZNF331!0.29!0.96!ZNF331;;chr1:155491214..155491227,-!p12@ASH1L!0.29!0.96!ASH1L;;chr1:156460436..156460462,-!p7@MEF2D!0.29!0.96!MEF2D;;chr1:161736032..161736035,+!p6@ATF6!0.29!0.96!ATF6;;chr1:167298384..167298412,+!p3@POU2F1!0.29!0.96!POU2F1;;chr1:173837572..173837581,+!p3@ZBTB37!0.29!0.96!ZBTB37;;chr1:23857674..23857685,-!p3@E2F2!0.29!0.96!E2F2;;chr1:3569072..3569093,+!p1@TP73!0.29!0.96!TP73;;chr1:3569101..3569115,+!p2@TP73!0.29!0.96!TP73;;chr1:42384532..42384603,-!p2@HIVEP3!0.29!0.96!HIVEP3;;chr1:42801540..42801562,-!p4@FOXJ3!0.29!0.96!FOXJ3;;chr1:8586084..8586100,-!p20@RERE!0.29!0.96!RERE;;chr1:92949505..92949543,-!p5@GFI1!0.29!0.96!GFI1;;chr1:92951607..92951661,-!p1@GFI1!0.29!0.96!GFI1;;chr20:22565370..22565388,-!p2@FOXA2!0.29!0.96!FOXA2;;chr20:30433431..30433442,-!p2@FOXS1!0.29!0.96!FOXS1;;
 +
|ffid_belonging_in_development=UBERON:0003104,UBERON:0003918,UBERON:0007687
 
|fonse_cell_line=FF:0100067
 
|fonse_cell_line=FF:0100067
 
|fonse_cell_line_closure=FF:0100067
 
|fonse_cell_line_closure=FF:0100067
Line 35: Line 41:
 
|fonse_treatment_closure=
 
|fonse_treatment_closure=
 
|has_quality=
 
|has_quality=
 +
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Wilms%2527%2520tumor%2520cell%2520line%253aHFWT.CNhs11728.10597-108E3.hg19.nobarcode.bam
 +
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Wilms%2527%2520tumor%2520cell%2520line%253aHFWT.CNhs11728.10597-108E3.hg19.ctss.bed.gz
 +
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Wilms%2527%2520tumor%2520cell%2520line%253aHFWT.CNhs11728.10597-108E3.hg19.nobarcode.rdna.fa.gz
 +
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/Wilms%2527%2520tumor%2520cell%2520line%253aHFWT.CNhs11728.10597-108E3.hg38.nobarcode.bam
 +
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/Wilms%2527%2520tumor%2520cell%2520line%253aHFWT.CNhs11728.10597-108E3.hg38.nobarcode.ctss.bed.gz
 
|id=FF:10597-108E3
 
|id=FF:10597-108E3
 
|is_a=EFO:0002091;;FF:0000210;;FF:0103192
 
|is_a=EFO:0002091;;FF:0000210;;FF:0103192
 
|is_obsolete=
 
|is_obsolete=
 +
|library_id=CNhs11728
 +
|library_id_phase_based=2:CNhs11728
 +
|microRNAs=
 +
|microRNAs_nn=
 +
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10597
 +
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10597
 
|name=Wilms' tumor cell line:HFWT
 
|name=Wilms' tumor cell line:HFWT
 
|namespace=FANTOM5
 
|namespace=FANTOM5
Line 43: Line 60:
 
|profile_cagescan=,,,
 
|profile_cagescan=,,,
 
|profile_hcage=CNhs11728,LSID819,release009,COMPLETED
 
|profile_hcage=CNhs11728,LSID819,release009,COMPLETED
|profile_rnaseq=,,,
+
|profile_rnaseq=
 
|profile_srnaseq=,,,
 
|profile_srnaseq=,,,
 +
|refex=http://refex.dbcls.jp/genelist.php?lang
 +
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,0.334120033347706,0.282960084399555,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139482197085237,0,0,0,0,0,0.194847311165607,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.328478856420898,0.24458313219461,0,0,0,0,0,0,0,0.503676748319243,0,0,0,0.292805207433665,0,0.10137956798563,0,0.492671289294437,0,0,0.195461580220568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0804712504680165,0,0.00623639145856125,0,0,0,0,0.469630966575166,-0.0647947989790365,0,0.292805207433665,0,0,0.194769856195958,0.521085755180217,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0.292805207433665,0,0,0.102734598083727,0.179736878042516,0,0,0,0,0,0
 +
|repeat_enrich_byname=0,0,0,0,0.194769856195958,0.466119888327111,0,0.466119888327111,0,0,0,0,0,0.292805207433665,0,0,0.342484775251478,0.0553605036999935,0.290269221276095,-0.143515142523472,0,0,-0.427279086909571,0,0,0,0,0,0,0.292805207433665,0,0,-0.128119866952565,0,0.24239265584435,0,0,0,0,-0.0186252810838506,-0.305472230898407,0,0.168609200390533,-0.0683442610773682,0,0,0,0,-0.270240669334324,0,-0.120879483793741,-0.0827201683234173,-0.221611588102807,-0.390179676695962,-0.0493919088910696,0,0,0,-0.531841963095838,-0.254023473364785,0,0,-0.121779851751874,0.0517103256028965,0,0,-0.391044581551635,0,0.0381391241006673,-0.0604397418968705,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0889091368953955,0.139131291648142,-0.0304099808375785,0,0.466119888327111,0,0.00568079498875251,0,0,0.515306591138645,0.560676078281253,0.106824146243356,0.904536297784475,0,-0.302389727009913,0.137052348335194,0.834807795159468,0.14824739579186,-0.147401849371139,-0.189981719549847,0,0.342561504908141,0.1023201179812,0.0535871000688246,-0.0574856272635527,0,-0.132773147887312,0.545985335328038,0,0,0,0.474459905335044,0,0.0471914000350591,-0.490114714476774,0.245650955630359,0.49992413185468,-0.0058073793774665,0.746452171577597,-0.0415113033485721,1.83602804951283,-0.457436452896595,0.21754983809984,0.0227240486439065,0.326554087072465,0,0.0750426560596877,0.0809618414116681,-0.785912107107322,0.0699083499014065,0,-0.191172254377316,-0.0683442610773682,0.146402603716833,0.104465819772985,0.180351172323105,0,0,-0.112657342544301,0,0,0,0,0.292805207433665,-0.0869604006858966,0.524489298866913,0.0599496458781198,0,0.393565600416533,0,0.17246952350661,0,0.220036768498954,-0.104914587438346,0.356994240971274,0.238979950295802,0,0.119357084977773,-0.403856661514449,0.40411395286246,-0.129589597958073,0.62728769626826,0.0338835062523725,-0.118717001213283,0.317720838578301,-0.0245844247621229,0.447604665538009,-0.0881268324752877,0,-0.417424862191269,0.00623639145856125,0.0229469901612118,-0.094260038972697,0,0.252204966654022,0,0.546421934965552,0,0.0086266164283415,-0.0743138631461288,0.659345985819106,-0.210579776350571,0,0.586564224361843,-0.788130937773974,0,0.2308979928334,0.0733472468831133,0.292805207433665,0.315752804992472,0.608720420213417,0.083181397403932,-0.138989456679195,0,0.040821393118997,0,0,-0.120164516909056,0.0573291696692759,0,0.653962723352215,0.279389832881816,0.494419319204498,0.473692577102108,0,0,0.9401743459073,0,0,0.42039264071053,0,0.406537380569927,0.336337309050287,0,0.0377797942625767,0,0.466119888327111,-0.177527765965176,0,0.243192933290708,0,0,-0.103478692881991,0.176177094443532,0,0.146402603716833,0,-0.0237658891492235,0,0,0,0,0,0,0,0.211324912739516,-0.0620281227827834,0,0.127545129753443,0,0,0,0,0,0,0,0,-1.59233083881968,0,-0.12301741567642,0,0,0,0,-0.215723402553475,-0.203236562094724,0,0.160942500936033,0,0,0,0,0.206664217644453,0,0,0,0,0.235074750380001,-0.228251967188429,0,0,0,0.74936630292677,0.292805207433665,0,0,0,0.325010048274503,0,0,-0.339124965952715,0,-0.207468995957973,0.749319671961812,0,-0.111945555187072,-0.448269035486355,0.105761657102373,0,0,0.503008308238216,0,0,-0.446280671096205,0,0.292805207433665,0,0,0,0,0,0.292805207433665,0,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0,-0.125979453492853,-0.0922240566585104,0.525603980019934,0,0,0.292805207433665,0,0,0,0.208953921084652,-0.0674307938649415,0,0,0,0,0,0,0,0,-0.178620732229577,0,0,0,0,0,0.492671289294437,0,0,0,0,0.56592016879911,0,0,0.55353941931514,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.334120033347706,0,0,0,0,0,0,0,0.314830352330952,0,0,0,0,0.178920833724687,0,0,0,-0.104796384789156,0,-0.160318030086386,0,0,0,0,0,0,0.146402603716833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0998045499520068,0,-0.00055993795413567,0.166870933057062,0,0,-0.0862257489162095,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292805207433665,0,0,0,0,0,0,-0.0348580438050884,0,0,0,0,0,0,0,0.194847311165607,0,0,-0.0920328098005262,0,0,0,0,0,0,0.240603483074175,0.0596468617168955,0.24627591262811,0,0,0,-0.054385572482455,0.292805207433665,0,0.120516428889511,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139482197085237,0,0.685734523080086,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.509645182268404,0,0,0,0.079718977776621,0,0,0,0,0,0,0,0,0.292805207433665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292805207433665,0,0,0,0.425472684558259,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24458313219461,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280397508992941,0,0,0,0,0.418482777666192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,0.17124138653392,0,0,0,0,0,0,0,0,0,0,0,0,0.231485028283538,0,0,0,0,0,0,0,0,0,0,0.417689846101443,0,0,0,0,0,0,0,0,0,0,0.589663650537043,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1406757803386,0.179736878042516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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|rna_box=108
 
|rna_box=108
 
|rna_catalog_number=
 
|rna_catalog_number=
Line 55: Line 75:
 
|rna_rin=
 
|rna_rin=
 
|rna_sample_type=total RNA
 
|rna_sample_type=total RNA
|rna_tube_id=108E3
+
|rna_tube_id=1.08E+05
 
|rna_weight_ug=24.11006
 
|rna_weight_ug=24.11006
 
|sample_age=5 months
 
|sample_age=5 months
 +
|sample_category=cell lines
 
|sample_cell_catalog=RCB0665
 
|sample_cell_catalog=RCB0665
 
|sample_cell_line=HFWT
 
|sample_cell_line=HFWT

Latest revision as of 10:31, 10 August 2017

Name:Wilms' tumor cell line:HFWT
Species:Human (Homo sapiens)
Library ID:CNhs11728
Sample type:cell lines
Genomic View: UCSC
MicroRNAs:Including candidate novel miRNAs(CAGE samples)
Excluding candidate novel miRNAs(CAGE samples)
RefEX:Specific genes
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissuekidney
dev stageNA
sexmale
age5 months
cell typeunclassifiable
cell lineHFWT
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

Accession numbers
MethodSample accession id
CAGE  SAMD00004939
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11728 CAGE DRX007795 DRR008667
Accession ID Hg19

Library idBAMCTSS
CNhs11728 DRZ000092 DRZ001477
Accession ID Hg38

Library idBAMCTSS
CNhs11728 DRZ011442 DRZ012827
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis--0.0543
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma--0.0158
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.293
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.00335
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0408
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.119
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.191
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus--0.256
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast1.656
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8--0.0522
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth--0.0608
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small--0.0706
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.123
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11728

Jaspar motif P-value
MA0002.2 0.0108
MA0003.1 0.0821
MA0004.1 0.797
MA0006.1 0.877
MA0007.1 0.823
MA0009.1 0.41
MA0014.1 0.844
MA0017.1 0.382
MA0018.2 0.954
MA0019.1 0.0249
MA0024.1 0.141
MA0025.1 0.935
MA0027.1 0.707
MA0028.1 0.0985
MA0029.1 0.0118
MA0030.1 0.986
MA0031.1 0.536
MA0035.2 0.578
MA0038.1 0.673
MA0039.2 0.959
MA0040.1 0.544
MA0041.1 0.733
MA0042.1 0.388
MA0043.1 0.0205
MA0046.1 0.677
MA0047.2 0.711
MA0048.1 0.693
MA0050.1 1.15051e-13
MA0051.1 2.20132e-9
MA0052.1 0.0639
MA0055.1 0.194
MA0057.1 0.726
MA0058.1 0.42
MA0059.1 0.28
MA0060.1 0.351
MA0061.1 6.3112e-4
MA0062.2 0.0046
MA0065.2 0.895
MA0066.1 0.747
MA0067.1 0.234
MA0068.1 0.169
MA0069.1 0.988
MA0070.1 0.364
MA0071.1 0.0722
MA0072.1 0.0546
MA0073.1 0.847
MA0074.1 0.637
MA0076.1 0.123
MA0077.1 0.0251
MA0078.1 0.00178
MA0079.2 0.683
MA0080.2 1.1061e-10
MA0081.1 0.0266
MA0083.1 0.00706
MA0084.1 0.117
MA0087.1 0.708
MA0088.1 0.835
MA0090.1 0.103
MA0091.1 0.86
MA0092.1 0.604
MA0093.1 0.836
MA0099.2 6.33402e-5
MA0100.1 0.447
MA0101.1 0.0193
MA0102.2 0.831
MA0103.1 0.56
MA0104.2 0.968
MA0105.1 3.47026e-5
MA0106.1 0.275
MA0107.1 0.00115
MA0108.2 1.20915e-4
MA0111.1 0.264
MA0112.2 0.0132
MA0113.1 0.623
MA0114.1 0.619
MA0115.1 0.0431
MA0116.1 0.00375
MA0117.1 0.23
MA0119.1 0.469
MA0122.1 0.445
MA0124.1 0.043
MA0125.1 0.471
MA0131.1 0.958
MA0135.1 0.264
MA0136.1 9.03026e-11
MA0137.2 0.0179
MA0138.2 0.773
MA0139.1 0.607
MA0140.1 0.728
MA0141.1 0.0402
MA0142.1 0.643
MA0143.1 0.984
MA0144.1 0.0082
MA0145.1 0.501
MA0146.1 0.152
MA0147.1 0.827
MA0148.1 0.973
MA0149.1 0.296
MA0150.1 0.0202
MA0152.1 0.568
MA0153.1 0.685
MA0154.1 0.0183
MA0155.1 0.741
MA0156.1 2.21577e-8
MA0157.1 0.0657
MA0159.1 0.221
MA0160.1 0.0315
MA0162.1 0.214
MA0163.1 5.50602e-6
MA0164.1 0.869
MA0258.1 0.447
MA0259.1 0.825



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11728

Novel motif P-value
1 0.599
10 0.017
100 0.445
101 0.542
102 0.632
103 0.7
104 0.507
105 0.178
106 0.0568
107 0.798
108 0.939
109 0.24
11 0.177
110 0.241
111 0.449
112 0.502
113 0.379
114 0.546
115 0.183
116 0.23
117 0.146
118 0.944
119 0.766
12 0.257
120 0.639
121 0.356
122 0.694
123 0.0139
124 0.512
125 0.384
126 0.628
127 0.338
128 0.998
129 0.494
13 0.243
130 0.987
131 0.718
132 0.837
133 0.00403
134 0.986
135 0.242
136 0.968
137 0.225
138 0.947
139 0.132
14 0.525
140 0.376
141 0.803
142 0.948
143 0.71
144 0.791
145 0.656
146 0.839
147 0.605
148 0.00266
149 0.202
15 0.755
150 0.335
151 0.541
152 0.161
153 0.669
154 0.751
155 0.215
156 0.374
157 0.26
158 0.36
159 0.767
16 0.107
160 0.0709
161 0.376
162 0.72
163 0.389
164 0.713
165 0.854
166 0.975
167 0.675
168 0.216
169 0.0416
17 0.812
18 0.108
19 0.12
2 0.0997
20 0.622
21 0.705
22 0.274
23 0.292
24 0.209
25 0.0271
26 0.829
27 0.441
28 0.677
29 0.252
3 0.295
30 0.357
31 0.589
32 0.00504
33 0.334
34 0.892
35 0.158
36 0.143
37 0.0116
38 0.662
39 0.373
4 0.166
40 0.488
41 0.495
42 0.526
43 0.243
44 0.0829
45 0.897
46 0.94
47 0.379
48 0.285
49 0.72
5 0.809
50 0.93
51 0.597
52 0.257
53 0.837
54 0.503
55 0.16
56 0.773
57 0.0865
58 0.00551
59 0.0897
6 0.727
60 0.00458
61 0.911
62 0.00212
63 0.739
64 0.551
65 0.651
66 0.179
67 0.143
68 0.833
69 0.711
7 0.226
70 0.368
71 0.0138
72 0.301
73 0.0838
74 0.949
75 0.132
76 0.835
77 0.037
78 0.636
79 0.0145
8 0.739
80 0.537
81 0.852
82 0.305
83 0.94
84 0.721
85 0.127
86 0.617
87 0.637
88 0.747
89 0.0215
9 0.0407
90 0.556
91 0.699
92 0.419
93 0.687
94 0.891
95 0.202
96 0.523
97 0.922
98 0.0972
99 0.348



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs11728


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

DOID: Disease
4 (disease)
7 (disease of anatomical entity)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000062 (organ)
0000475 (organism subdivision)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0005177 (trunk region element)
0005172 (abdomen element)
0005173 (abdominal segment element)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100067 (kidney cell line sample)
0103192 (renal cancer cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON:0003104 (mesenchyme)
UBERON:0003918 (kidney mesenchyme)
UBERON:0007687 (kidney field)