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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004866
|accession_numbers=CAGE;DRX007901;DRR008773;DRZ000198;DRZ001583;DRZ011548;DRZ012933
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000548,CL:0000151,CL:0000012,CL:0002321,CL:0000063,CL:0000066,CL:0002371,CL:0002078,CL:0000163,CL:0000220,CL:0000004,CL:0000174,CL:0002174,CL:0000255,CL:0000222,CL:0000501
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0000066,CL:0002371,CL:0002078,CL:0000163,CL:0000174,CL:0002174,CL:0000255,CL:0000501
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:193
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:193
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0102285
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr11:61520075..61520136,+!p1@C11orf9!1.95!182.22!C11orf9;;chr8:11561684..11561751,+!p1@GATA4!1.61!39.97!GATA4;;chr1:197886461..197886558,+!p1@LHX9!1.47!28.79!LHX9;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.46!27.93!ZBED1;;chr6:10415276..10415341,-!p2@TFAP2A!1.45!32.66!TFAP2A;;chr18:19749386..19749404,+!p2@GATA6!1.39!33.09!GATA6;;chr3:138665937..138665968,-!p1@FOXL2!1.33!20.20!FOXL2;;chr11:65686802..65686818,+!p6@DRAP1!1.32!33.95!DRAP1;;chr11:46299199..46299233,+!p1@CREB3L1!1.30!96.70!CREB3L1;;chr11:46299539..46299620,+!p2@CREB3L1!1.23!27.08!CREB3L1;;chr5:134369905..134369972,-!p1@PITX1!1.22!24.07!PITX1;;chr6:10412600..10412637,-!p1@TFAP2A!1.18!23.64!TFAP2A;;chr3:138665969..138665993,-!p2@FOXL2!1.16!13.32!FOXL2;;chr8:106330656..106330684,+!p1@ZFPM2!1.14!33.52!ZFPM2;;chr3:169381420..169381535,-!p1@MECOM!1.13!14.61!MECOM;;chr11:65668011..65668020,-!p3@FOSL1!1.13!12.46!FOSL1;;chr11:65667884..65667895,-!p2@FOSL1!1.11!46.41!FOSL1;;chr20:61051039..61051057,-!p1@GATA5!1.10!11.60!GATA5;;chr20:50179368..50179392,-!p2@NFATC2!1.08!14.18!NFATC2;;chr18:53068911..53068935,-!p4@TCF4!1.07!12.03!TCF4;;chr9:127269661..127269719,-!p1@NR5A1!1.07!10.74!NR5A1;;chr2:19558373..19558392,-!p1@OSR1!1.04!27.93!OSR1;;chr5:134369879..134369898,-!p2@PITX1!1.04!9.88!PITX1;;chr8:106330696..106330719,+!p2@ZFPM2!0.99!11.17!ZFPM2;;chr3:114343768..114343822,-!p1@ZBTB20!0.98!38.68!ZBTB20;;chr15:80843484..80843499,+!p5@ARNT2!0.98!8.60!ARNT2;;chr10:63809013..63809041,+!p3@ARID5B!0.97!47.27!ARID5B;;chr11:31832658..31832681,-!p1@PAX6!0.96!8.17!PAX6;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.96!8.17!SEBOX;;chr18:19749353..19749367,+!p4@GATA6!0.96!8.17!GATA6;;chr6:10415484..10415508,-!p3@TFAP2A!0.94!7.74!TFAP2A;;chr18:19749541..19749557,+!p1@GATA6!0.91!23.21!GATA6;;chr19:45908292..45908374,-!p1@PPP1R13L!0.90!64.89!PPP1R13L;;chr15:67357924..67357952,+!p2@SMAD3!0.90!48.56!SMAD3;;chr7:26191809..26191890,+!p1@NFE2L3!0.90!35.67!NFE2L3;;chr14:73360799..73360817,-!p1@DPF3!0.90!25.36!DPF3;;chr18:19749517..19749531,+!p3@GATA6!0.90!12.89!GATA6;;chr11:65667846..65667868,-!p1@FOSL1!0.89!186.95!FOSL1;;chr12:80085061..80085119,-!p6@PAWR!0.89!11.17!PAWR;;chr6:21597600..21597664,+!p3@SOX4!0.88!11.17!SOX4;;chr12:77459306..77459365,-!p1@E2F7!0.87!84.66!E2F7;;chr7:28448965..28448994,+!p2@CREB5!0.85!22.78!CREB5;;chr7:1577899..1577943,+!p3@MAFK!0.85!6.02!MAFK;;chr5:176738887..176738934,-!p1@MXD3!0.84!42.12!MXD3;;chr11:65686732..65686756,+!p2@DRAP1!0.84!26.65!DRAP1;;chr13:72441315..72441454,-!p1@DACH1!0.84!12.46!DACH1;;chr6:21593973..21593988,+!p1@SOX4!0.83!223.48!SOX4;;chr18:6414884..6414942,-!p1@L3MBTL4!0.83!7.31!L3MBTL4;;chr6:19837592..19837621,+!p1@ID4!0.82!36.96!ID4;;chr5:321810..321877,+!p1@AHRR!0.82!18.91!AHRR;;chr9:4299979..4299996,-!p3@GLIS3!0.82!9.45!GLIS3;;chr12:26277817..26277863,-!p2@BHLHE41!0.82!7.74!BHLHE41;;chr12:54394309..54394336,+!p2@HOXC9!0.82!5.59!HOXC9;;chr19:54058073..54058088,+!p1@ZNF331!0.82!5.59!ZNF331;;chr12:26277956..26277980,-!p1@BHLHE41!0.81!21.06!BHLHE41;;chr19:16435625..16435682,+!p1@KLF2!0.80!183.94!KLF2;;chr15:67418119..67418162,+!p5@SMAD3!0.80!6.02!SMAD3;;chr6:10412576..10412599,-!p5@TFAP2A!0.79!5.16!TFAP2A;;chr9:4300050..4300118,-!p1@GLIS3!0.77!35.24!GLIS3;;chr18:72922811..72922827,+!p1@TSHZ1!0.77!26.65!TSHZ1;;chr7:19157248..19157268,-!p1@TWIST1!0.77!14.61!TWIST1;;chrX:66763815..66763854,+!p2@AR!0.76!6.45!AR;;chr15:80696703..80696754,+!p1@ARNT2!0.75!6.45!ARNT2;;chr13:74708475..74708499,-!p5@KLF12!0.74!11.17!KLF12;;chr6:10412392..10412409,-!p4@TFAP2A!0.74!5.16!TFAP2A;;chrX:128657457..128657475,-!p1@SMARCA1!0.73!56.73!SMARCA1;;chr19:45971246..45971265,+!p1@FOSB!0.72!88.53!FOSB;;chr5:158526917..158526932,-!p1@EBF1!0.72!11.60!EBF1;;chr7:19157043..19157088,-!p2@TWIST1!0.72!11.60!TWIST1;;chr1:200379104..200379128,-!p2@ZNF281!0.72!11.17!ZNF281;;chr1:200008734..200008765,+!p2@NR5A2!0.72!4.30!NR5A2;;chr11:128563652..128563689,+!p3@FLI1!0.72!4.30!FLI1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.72!4.30!HOXC5;;chr15:67418177..67418204,+!p9@SMAD3!0.72!4.30!SMAD3;;chr10:63809106..63809127,+!p1@ARID5B!0.71!63.61!ARID5B;;chr7:28220198..28220269,-!p2@JAZF1!0.71!41.26!JAZF1;;chr7:28725740..28725778,+!p1@CREB5!0.71!41.26!CREB5;;chr18:72922743..72922761,+!p3@TSHZ1!0.71!15.04!TSHZ1;;chr7:28448995..28449011,+!p4@CREB5!0.71!6.02!CREB5;;chr14:62162258..62162269,+!p2@HIF1A!0.69!42.98!HIF1A;;chr15:67418047..67418093,+!p4@SMAD3!0.69!5.16!SMAD3;;chr8:37553292..37553317,+!p1@ZNF703!0.68!104.00!ZNF703;;chr15:96873892..96873919,+!p4@NR2F2!0.68!42.55!NR2F2;;chr8:23540441..23540466,-!p1@NKX3-1!0.68!8.17!NKX3-1;;chr7:137686763..137686784,-!p5@CREB3L2!0.67!6.88!CREB3L2;;chr12:80085255..80085284,-!p9@PAWR!0.67!5.59!PAWR;;chrX:66763856..66763896,+!p1@AR!0.67!5.59!AR;;chr15:96869255..96869291,+!p6@NR2F2!0.65!6.88!NR2F2;;chr9:16870710..16870763,-!p1@BNC2!0.65!6.45!BNC2;;chr7:27153454..27153469,-!p2@HOXA3!0.65!3.44!HOXA3;;chr8:11534521..11534533,+!p4@GATA4!0.65!3.44!GATA4;;chr15:96873921..96873946,+!p1@NR2F2!0.64!112.17!NR2F2;;c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;;chr9:14314131..14314147,-!p2@NFIB!0.18!6.88!NFIB;;chr6:20403826..20403886,+!p2@E2F3!0.18!6.02!E2F3;;chr7:101459230..101459243,+!p2@CUX1!0.18!6.02!CUX1;;chr2:174830564..174830605,-!p3@SP3!0.18!6.02!SP3;;chr19:36909528..36909581,-!p1@ZFP82!0.18!5.59!ZFP82;;chr6:44355257..44355315,+!p2@CDC5L!0.18!5.59!CDC5L;;chr2:239148671..239148686,-!p1@HES6!0.18!4.30!HES6;;chr16:71918033..71918101,-!p1@ZNF821!0.18!4.30!ZNF821;;chr19:44439387..44439419,-!p2@ZNF45!0.18!4.30!ZNF45;;chr6:15246200..15246214,+!p2@JARID2!0.18!3.01!JARID2;;chr1:33721900..33721921,+!p2@ZNF362!0.18!2.58!ZNF362;;chr20:3388207..3388236,-!p4@C20orf194!0.18!2.58!C20orf194;;chr10:76585205..76585251,+!p3@KAT6B!0.18!2.15!KAT6B;;chr12:3068466..3068495,+!p3@TEAD4!0.18!2.15!TEAD4;;chr19:24269949..24269969,+!p3@ZNF254!0.18!2.15!ZNF254;;chr2:37458749..37458766,-!p2@CEBPZ!0.18!2.15!CEBPZ;;chr8:144766669..144766683,+!p2@ZNF707!0.18!1.72!ZNF707;;chr11:85376097..85376108,-!p2@CREBZF!0.18!1.72!CREBZF;;chr12:19592563..19592585,+!p5@AEBP2!0.18!1.29!AEBP2;;chr12:56583297..56583304,-!p4@SMARCC2!0.18!1.29!SMARCC2;;chr9:130952713..130952727,-!p3@CIZ1!0.18!1.29!CIZ1;;chr1:8483723..8483752,-!p12@RERE!0.18!1.29!RERE;;chr18:52989081..52989117,-!p7@TCF4!0.18!1.29!TCF4;;chr19:35455160..35455197,-!p2@ZNF792!0.18!1.29!ZNF792;;chr16:30583204..30583233,-!p5@ZNF688!0.18!0.86!ZNF688;;chr19:20844346..20844351,-!p2@ZNF626!0.18!0.86!ZNF626;;chr19:37998036..37998098,+!p2@ZNF793!0.18!0.86!ZNF793;;chrX:152599653..152599662,+!p3@ZNF275!0.18!0.86!ZNF275;;chrX:76938351..76938379,-!p7@ATRX!0.18!0.86!ATRX;;chr12:80083544..80083558,-!p13@PAWR!0.18!0.86!PAWR;;chr12:80083807..80083859,-!p11@PAWR!0.18!0.86!PAWR;;chr1:249153309..249153330,-!p4@ZNF692!0.18!0.86!ZNF692;;chr20:48807548..48807572,+!p14@CEBPB!0.18!0.86!CEBPB;;chr6:43140095..43140145,+!p5@SRF!0.18!0.86!SRF;;chr1:8938709..8938720,-!p3@ENO1!0.17!64.04!ENO1;;chr2:220094514..220094599,+!p1@ANKZF1!0.17!38.25!ANKZF1;;chr11:65430402..65430431,-!p2@RELA!0.17!34.81!RELA;;chr11:695006..695074,-!p1@DEAF1!0.17!20.20!DEAF1;;chr4:87856129..87856186,+!p1@AFF1!0.17!18.05!AFF1;;chr21:30671235..30671253,+!p1@BACH1!0.17!16.33!BACH1;;chr6:130339710..130339745,+!p1@L3MBTL3!0.17!9.88!L3MBTL3;;chr7:64023441..64023462,-!p1@ZNF680!0.17!9.88!ZNF680;;chr10:76586348..76586366,+!p1@KAT6B!0.17!9.45!KAT6B;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!0.17!6.88!ZNF10;;chrX:129402866..129402880,-!p1@ZNF280C!0.17!6.88!ZNF280C;;chr19:9434841..9434886,+!p1@ZNF559!0.17!6.02!ZNF559;;chr8:146176199..146176272,-!p1@ZNF16!0.17!5.59!ZNF16;;chr19:15543565..15543579,-!p2@WIZ!0.17!5.16!WIZ;;chr20:46130672..46130686,+!p2@NCOA3!0.17!5.16!NCOA3;;chr13:41635285..41635356,-!p3@ELF1!0.17!4.73!ELF1;;chr19:58920000..58920057,+!p1@ZNF584!0.17!4.30!ZNF584;;chr2:25564750..25564807,-!p1@DNMT3A!0.17!4.30!DNMT3A;;chr4:38665883..38665922,+!p3@KLF3!0.17!4.30!KLF3;;chr15:71184724..71184778,-!p1@THAP10!0.17!4.30!THAP10;;chr19:58220517..58220583,-!p1@ZNF154!0.17!3.44!ZNF154;;chr7:148787768..148787825,-!p1@ZNF786!0.17!3.44!ZNF786;;chr6:43337255..43337329,-!p2@ZNF318!0.17!3.01!ZNF318;;chr19:53636125..53636178,-!p1@ZNF415!0.17!3.01!ZNF415;;chr19:45250948..45250998,+!p3@BCL3!0.17!2.58!BCL3;;chr6:157099036..157099067,+!p5@ARID1B!0.17!2.58!ARID1B;;chr3:178789622..178789633,-!p3@ZMAT3!0.17!1.72!ZMAT3;;chr3:24536253..24536328,-!p1@THRB!0.17!1.72!THRB;;chr3:170075357..170075368,+!p3@SKIL!0.17!1.29!SKIL;;chr20:42143136..42143161,+!p3@L3MBTL1!0.17!1.29!L3MBTL;;chr20:52185447..52185462,-!p2@ZNF217!0.17!1.29!ZNF217;;chr12:432372..432377,-!p3@KDM5A!0.17!1.29!KDM5A;;chr12:50479101..50479108,+!p3@SMARCD1!0.17!1.29!SMARCD1;;
|ffid_belonging_in_development=CL:0000222
|fonse_cell_line=FF:0102285
|fonse_cell_line=FF:0102285
|fonse_cell_line_closure=FF:0102285
|fonse_cell_line_closure=FF:0102285
Line 35: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/granulosa%2520cell%2520tumor%2520cell%2520line%253aKGN.CNhs11740.10624-108H3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/granulosa%2520cell%2520tumor%2520cell%2520line%253aKGN.CNhs11740.10624-108H3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/granulosa%2520cell%2520tumor%2520cell%2520line%253aKGN.CNhs11740.10624-108H3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/granulosa%2520cell%2520tumor%2520cell%2520line%253aKGN.CNhs11740.10624-108H3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/granulosa%2520cell%2520tumor%2520cell%2520line%253aKGN.CNhs11740.10624-108H3.hg38.nobarcode.ctss.bed.gz
|id=FF:10624-108H3
|id=FF:10624-108H3
|is_a=EFO:0002091;;FF:0000210;;FF:0102285
|is_a=EFO:0002091;;FF:0000210;;FF:0102285
|is_obsolete=
|is_obsolete=
|library_id=CNhs11740
|library_id_phase_based=2:CNhs11740
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10624
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10624
|name=granulosa cell tumor cell line:KGN
|name=granulosa cell tumor cell line:KGN
|namespace=FANTOM5
|namespace=FANTOM5
Line 43: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11740,LSID819,release009,COMPLETED
|profile_hcage=CNhs11740,LSID819,release009,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_catalog_number=
Line 58: Line 78:
|rna_weight_ug=29.50331
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|sample_cell_line=KGN
|sample_cell_line=KGN
Line 79: Line 100:
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|top_motifs=HMGA1,2:1.54401233626;POU5F1:1.49704109751;NKX3-1:1.49248177018;EVI1:1.48543001462;PAX8:1.44393668466;NKX2-1,4:1.42019408994;TEF:1.33649329046;PAX4:1.1147838881;ATF6:1.06057471838;VSX1,2:1.05295146939;TEAD1:1.03710603273;MTE{core}:1.03699183366;GATA4:0.958737249513;NR6A1:0.956430630514;POU3F1..4:0.937287423995;UFEwm:0.901347057184;GTF2A1,2:0.889081574405;RXRA_VDR{dimer}:0.883058431577;TBX4,5:0.829330755197;HIC1:0.807773537723;EN1,2:0.802114677024;ZBTB16:0.769882703852;MYBL2:0.759715724292;AIRE:0.75923831346;NR3C1:0.75413729759;HOX{A5,B5}:0.748264385489;FOXD3:0.743432225336;GLI1..3:0.691364943294;HIF1A:0.656478020107;POU6F1:0.634542585874;FOXA2:0.630256644525;HOX{A4,D4}:0.607926141685;NKX6-1,2:0.600558638824;TFAP2{A,C}:0.553453717168;SRF:0.5512038126;FOXL1:0.539960609887;SOX17:0.519924672271;PRDM1:0.519338523432;TFDP1:0.511227248952;DBP:0.484041732685;TFCP2:0.477489151489;NFATC1..3:0.470654128049;ZFP161:0.464304063354;EGR1..3:0.462809093116;ZNF384:0.452244233958;T:0.447017282822;TFAP2B:0.444694032661;PITX1..3:0.410486200481;TOPORS:0.395426765802;LMO2:0.393444406408;FOXP1:0.376878635547;HOXA9_MEIS1:0.369158054901;ARID5B:0.365334824056;ZNF423:0.360217698863;TAL1_TCF{3,4,12}:0.35247186964;MAZ:0.346432089269;AHR_ARNT_ARNT2:0.322230270399;PAX3,7:0.316165567139;ZBTB6:0.297138826511;POU1F1:0.295566113635;GZF1:0.284528187599;TLX1..3_NFIC{dimer}:0.283904134005;ONECUT1,2:0.276803478438;CDC5L:0.275792797038;ZNF143:0.273701819134;TFAP4:0.251512485892;MYFfamily:0.241781812638;MED-1{core}:0.238005248251;IRF1,2:0.231958988106;SMAD1..7,9:0.220553633108;ZIC1..3:0.217634577693;GTF2I:0.202314626863;GCM1,2:0.201051446422;E2F1..5:0.198789645185;ADNP_IRX_SIX_ZHX:0.195291815989;NFE2L2:0.193256500037;XCPE1{core}:0.191328211746;RFX1:0.183476527755;SOX2:0.171665596869;LHX3,4:0.16683879212;MZF1:0.143148043493;HNF1A:0.117393867745;KLF4:0.0876226299925;NKX3-2:0.086947632744;ALX1:0.0676583035281;IKZF2:0.0611277137198;MEF2{A,B,C,D}:0.0593277796979;AR:0.0546037502072;BACH2:0.0506586574824;ESRRA:0.0479935308478;GFI1:0.0456673058085;SP1:0.0403991917424;MAFB:0.0345839885171;PATZ1:0.0295478222575;FOSL2:0.0258449029731;REST:0.0174114820221;NR5A1,2:0.0131493183371;NKX2-2,8:0.000864558647832;OCT4_SOX2{dimer}:-0.0235135904574;NHLH1,2:-0.0268893543832;FOX{D1,D2}:-0.0288758381867;ZNF148:-0.0332312790281;GFI1B:-0.0368643493729;LEF1_TCF7_TCF7L1,2:-0.0412789897424;XBP1:-0.045815974273;HOX{A6,A7,B6,B7}:-0.0604203367365;NRF1:-0.0634240500515;HBP1_HMGB_SSRP1_UBTF:-0.0712034449485;NKX2-3_NKX2-5:-0.0802509738858;MYB:-0.0805558637755;HAND1,2:-0.0836672797052;NFE2L1:-0.0851186958236;FOX{F1,F2,J1}:-0.0899481502083;FOS_FOS{B,L1}_JUN{B,D}:-0.0921051740518;PAX6:-0.0979139634818;NR1H4:-0.10425047325;SNAI1..3:-0.105825649534;TBP:-0.124777239318;PAX5:-0.139022251611;PPARG:-0.141235234587;BREu{core}:-0.162461410058;EP300:-0.164786149788;MYOD1:-0.165345701703;GATA6:-0.17340451516;SOX{8,9,10}:-0.186434129594;STAT2,4,6:-0.194002979184;ALX4:-0.194993747377;IKZF1:-0.201161126595;NFY{A,B,C}:-0.201301423109;TP53:-0.203199157464;CREB1:-0.2095788451;BPTF:-0.211182646578;ATF4:-0.219110625421;bHLH_family:-0.230262854567;POU2F1..3:-0.241100552457;ATF5_CREB3:-0.241614791923;HLF:-0.249091083629;HNF4A_NR2F1,2:-0.266943425405;NFKB1_REL_RELA:-0.278986493574;ELK1,4_GABP{A,B1}:-0.306955044286;PAX1,9:-0.328374833837;CUX2:-0.334008624205;NFE2:-0.334064749495;FOXO1,3,4:-0.342504277122;ZEB1:-0.342942903506;RXR{A,B,G}:-0.347661558765;HES1:-0.351085781664;FOXP3:-0.360248020413;CEBPA,B_DDIT3:-0.374352491461;DMAP1_NCOR{1,2}_SMARC:-0.376743226221;PAX2:-0.383832096217;IRF7:-0.385461905229;NFIX:-0.389226610402;STAT5{A,B}:-0.398083421248;HMX1:-0.402392764432;HSF1,2:-0.411697882009;ESR1:-0.414824686815;RREB1:-0.438146462495;SPZ1:-0.448189655955;ZNF238:-0.46369199554;MTF1:-0.476995853584;SOX5:-0.484811142367;NFIL3:-0.503479277008;SREBF1,2:-0.513119397192;TGIF1:-0.544548386759;CRX:-0.547683521843;FOXN1:-0.555720993916;RORA:-0.558376584532;RUNX1..3:-0.57094438019;SPIB:-0.576974966016;YY1:-0.597579595043;ETS1,2:-0.619534446424;ATF2:-0.639582672374;FOXM1:-0.643771943219;SPI1:-0.682087249716;JUN:-0.686075420564;CDX1,2,4:-0.689554089671;STAT1,3:-0.691450834686;NANOG:-0.713551344164;ELF1,2,4:-0.723355924636;EBF1:-0.749050148561;NANOG{mouse}:-0.850303340607;PDX1:-0.971915299612;PRRX1,2:-1.02944584264;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.07166189155;RFX2..5_RFXANK_RFXAP:-1.0881269854;TLX2:-1.10042487581;FOX{I1,J2}:-1.11574310035;PBX1:-1.26720025468;RBPJ:-1.4672822168;FOXQ1:-1.61933635968;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.64912357937
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10624-108H3;search_select_hide=table117:FF:10624-108H3
}}
}}

Latest revision as of 14:31, 3 June 2020

Name:granulosa cell tumor cell line:KGN
Species:Human (Homo sapiens)
Library ID:CNhs11740
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueovary
dev stageNA
sexfemale
age69
cell typegranulosa cell
cell lineKGN
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004866
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11740 CAGE DRX007901 DRR008773
Accession ID Hg19

Library idBAMCTSS
CNhs11740 DRZ000198 DRZ001583
Accession ID Hg38

Library idBAMCTSS
CNhs11740 DRZ011548 DRZ012933
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.271
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.396
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0031
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0744
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.0836
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.145
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.155
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.1
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.647
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0522
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0637
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.177
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.111
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature-0.00929
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.269
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.36
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.498
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.525
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11740

Jaspar motifP-value
MA0002.20.0636
MA0003.10.206
MA0004.10.0164
MA0006.10.512
MA0007.10.386
MA0009.10.0244
MA0014.10.416
MA0017.10.00268
MA0018.27.33118e-4
MA0019.10.364
MA0024.10.848
MA0025.17.51882e-4
MA0027.10.8
MA0028.11.27045e-4
MA0029.10.243
MA0030.10.311
MA0031.10.354
MA0035.20.354
MA0038.10.268
MA0039.20.0663
MA0040.10.505
MA0041.10.477
MA0042.10.511
MA0043.11.05496e-4
MA0046.10.572
MA0047.20.251
MA0048.10.614
MA0050.10.623
MA0051.10.0765
MA0052.10.351
MA0055.10.271
MA0057.10.91
MA0058.16.20615e-4
MA0059.10.0849
MA0060.10.11
MA0061.10.00107
MA0062.21.19327e-11
MA0065.28.40474e-4
MA0066.10.386
MA0067.18.82298e-4
MA0068.10.2
MA0069.10.679
MA0070.10.384
MA0071.10.624
MA0072.10.521
MA0073.10.916
MA0074.10.976
MA0076.13.82939e-6
MA0077.10.0826
MA0078.10.791
MA0079.20.401
MA0080.21.57868e-12
MA0081.14.08274e-5
MA0083.10.0662
MA0084.10.415
MA0087.10.215
MA0088.10.452
MA0090.11.27665e-5
MA0091.10.0832
MA0092.10.598
MA0093.10.0214
MA0099.20.0221
MA0100.10.358
MA0101.10.00735
MA0102.20.00624
MA0103.10.115
MA0104.20.0115
MA0105.11.40266e-4
MA0106.10.974
MA0107.10.0253
MA0108.20.0897
MA0111.10.517
MA0112.20.104
MA0113.10.651
MA0114.10.00182
MA0115.10.146
MA0116.10.00217
MA0117.10.509
MA0119.10.533
MA0122.10.126
MA0124.10.177
MA0125.10.0545
MA0131.10.478
MA0135.10.00431
MA0136.13.14901e-15
MA0137.20.0107
MA0138.20.0881
MA0139.10.131
MA0140.10.82
MA0141.10.713
MA0142.10.74
MA0143.10.18
MA0144.10.0244
MA0145.10.313
MA0146.10.0163
MA0147.10.0266
MA0148.10.375
MA0149.10.362
MA0150.10.0484
MA0152.10.0122
MA0153.10.74
MA0154.10.00716
MA0155.10.413
MA0156.15.80838e-15
MA0157.10.314
MA0159.10.169
MA0160.10.283
MA0162.10.9
MA0163.11.44859e-4
MA0164.10.794
MA0258.10.463
MA0259.10.599



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11740

Novel motifP-value
10.436
100.157
1000.78
1010.698
1020.199
1030.0651
1040.692
1050.111
1060.233
1070.0485
1080.898
1090.0766
110.085
1100.45
1110.247
1120.031
1130.0315
1140.947
1150.0304
1160.884
1170.00125
1180.877
1190.808
120.00551
1200.918
1210.0543
1220.3
1230.793
1240.641
1250.999
1260.276
1270.521
1280.897
1290.0802
130.105
1300.262
1310.451
1320.832
1330.173
1340.488
1350.963
1360.538
1370.0263
1380.399
1390.188
140.308
1400.587
1410.167
1420.619
1430.688
1440.65
1450.273
1460.7
1470.0459
1480.398
1490.56
150.71
1500.947
1510.989
1520.832
1530.181
1540.637
1550.0246
1560.172
1570.296
1580.00156
1590.185
160.211
1600.638
1610.998
1620.997
1630.44
1640.588
1650.821
1660.00228
1670.684
1680.256
1690.138
170.79
180.432
190.684
20.97
200.404
210.315
220.0971
230.574
240.388
250.189
260.704
270.531
280.702
290.431
30.301
300.769
310.535
326.87189e-5
330.351
340.742
350.418
360.262
370.0168
380.31
390.493
40.533
400.194
410.721
420.399
430.407
440.32
450.25
460.657
470.236
480.324
490.232
50.92
500.857
510.383
520.848
530.24
540.936
550.692
560.853
570.702
580.079
590.357
60.447
600.217
610.993
620.47
630.713
640.33
650.19
660.964
670.981
680.416
690.848
70.0951
700.817
710.0516
720.0678
730.394
740.0338
750.0804
760.0865
770.664
780.054
790.0664
80.566
800.0579
810.595
820.934
830.913
840.657
850.916
860.553
870.894
880.949
890.983
90.0844
900.42
910.988
920.925
930.727
940.955
955.17526e-4
960.714
970.42
980.01
990.183



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11740


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002078 (meso-epithelial cell)
0000163 (endocrine cell)
0000174 (steroid hormone secreting cell)
0002174 (follicular cell of ovary)
0000255 (eukaryotic cell)
0000501 (granulosa cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
193 (reproductive organ cancer)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0102285 (granulosa cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)

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