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(Created page with "{{f5samples |id=FF:10633-108I3 |name=hepatoblastoma cell line:HuH-6, biol_rep1 |sample_id=10633 |rna_tube_id=108I3 |rna_box=108 |rna_position=I3 |sample_cell_lot= |sam...")
 
 
(28 intermediate revisions by the same user not shown)
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{{f5samples
 
{{f5samples
|id=FF:10633-108I3
+
|DRA_sample_Accession=CAGE@SAMD00005793
|name=hepatoblastoma cell line:HuH-6, biol_rep1
+
|accession_numbers=CAGE;DRX007904;DRR008776;DRZ000201;DRZ001586;DRZ011551;DRZ012936
|sample_id=10633
+
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423
|rna_tube_id=108I3
+
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000181,CL:0000417,CL:0000668,CL:0000412,CL:0000255,CL:0000182
|rna_box=108
+
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305
|rna_position=I3
+
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100224,FF:0100578,FF:0101664,FF:0101670
|sample_cell_lot=
+
|comment=
|sample_cell_catalog=RCB1367
+
|created_by=
|sample_company=RIKEN Bioresource centre
+
|creation_date=
|rna_lot_number=
+
|data_phase=2
|rna_catalog_number=
+
|datafreeze_phase=2
|sample_species=Human (Homo sapiens)
+
|def=
|sample_strain=
+
|expression_enrichment_score=chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.71!511.42!PEG3;;chr6:1312325..1312340,+!p1@FOXQ1!2.65!705.97!FOXQ1;;chr7:73038839..73038862,-!p1@MLXIPL!2.22!163.09!MLXIPL;;chr1:164528687..164528711,+!p6@PBX1!2.10!144.45!PBX1;;chr19:33793430..33793447,-!p1@CEBPA!1.93!336.67!CEBPA;;chr2:171571827..171571853,+!p1@SP5!1.90!79.22!SP5;;chr7:156803329..156803362,-!p1@MNX1!1.88!75.72!MNX1;;chr8:55370487..55370503,+!p1@SOX17!1.83!66.40!SOX17;;chr20:42984330..42984364,+!p2@HNF4A!1.79!60.58!HNF4A;;chr1:214161272..214161322,+!p1@PROX1!1.72!71.06!PROX1;;chr12:115122318..115122331,-!p2@TBX3!1.66!44.27!TBX3;;chr16:85932760..85932775,+!p1@IRF8!1.61!39.61!IRF8;;chr12:66218836..66218888,+!p1@HMGA2!1.60!344.83!HMGA2;;chr18:19749541..19749557,+!p1@GATA6!1.60!116.50!GATA6;;chr19:54024251..54024305,+!p4@ZNF331!1.58!59.41!ZNF331;;chr8:145701192..145701241,-!p1@FOXH1!1.58!37.28!FOXH1;;chr2:171572786..171572840,+!p2@SP5!1.57!36.11!SP5;;chr2:25475120..25475176,-!p2@DNMT3A!1.56!46.60!DNMT3A;;chr17:41622765..41622821,-!p2@ETV4!1.55!52.42!ETV4;;chr7:27179814..27179840,-!p4@HOXA3!1.54!33.78!HOXA3;;chr19:54024313..54024361,+!p7@ZNF331!1.54!33.78!ZNF331;;chr19:46367576..46367592,+!p1@FOXA3!1.53!32.62!FOXA3;;chrX:131547625..131547644,-!p4@MBNL3!1.53!32.62!MBNL3;;chr1:214161328..214161348,+!p2@PROX1!1.48!29.12!PROX1;;chr17:41623692..41623715,-!p1@ETV4!1.46!114.17!ETV4;;chr10:8095593..8095625,+!p3@GATA3!1.45!31.45!GATA3;;chr2:171571931..171571959,+!p3@SP5!1.43!25.63!SP5;;chr1:209979467..209979494,-!p1@IRF6!1.41!27.96!IRF6;;chr12:56414795..56414836,+!p4@IKZF4!1.41!24.46!IKZF4;;chr13:28543431..28543487,-!p1@CDX2!1.41!24.46!CDX2;;chr18:19749517..19749531,+!p3@GATA6!1.39!41.94!GATA6;;chr12:66218183..66218209,+!p4@HMGA2!1.38!43.10!HMGA2;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.36!22.13!SEBOX;;chr20:43029862..43029900,+!p1@HNF4A!1.36!22.13!HNF4A;;chr20:50418972..50419029,-!p1@SALL4!1.36!22.13!SALL4;;chr12:115122303..115122314,-!p6@TBX3!1.34!20.97!TBX3;;chr6:41514078..41514158,+!p1@FOXP4!1.33!177.07!FOXP4;;chr5:174151612..174151633,+!p2@MSX2!1.32!19.80!MSX2;;chr13:28543285..28543314,-!p2@CDX2!1.32!19.80!CDX2;;chr17:41622925..41622976,-!p3@ETV4!1.30!27.96!ETV4;;chr17:46667594..46667619,-!p1@HOXB3!1.29!18.64!HOXB3;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.29!18.64!HOXC5;;chr13:28543388..28543406,-!p3@CDX2!1.29!18.64!CDX2;;chr20:22564895..22564910,-!p1@FOXA2!1.29!18.64!FOXA2;;chrY:21906594..21906622,-!p1@KDM5D!1.29!18.64!KDM5D;;chr2:172967621..172967637,-!p1@DLX2!1.28!47.76!DLX2;;chr12:66218255..66218304,+!p3@HMGA2!1.27!46.60!HMGA2;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.27!17.47!SEBOX;;chr19:926001..926046,+!p1@ARID3A!1.25!57.08!ARID3A;;chr2:239148671..239148686,-!p1@HES6!1.24!59.41!HES6;;chr12:66218003..66218018,+!p9@HMGA2!1.24!19.80!HMGA2;;chr6:1312155..1312187,+!p2@FOXQ1!1.24!16.31!FOXQ1;;chr1:91487774..91487802,-!p2@ZNF644!1.21!39.61!ZNF644;;chr17:7388010..7388017,-!p5@ZBTB4!1.21!25.63!ZBTB4;;chr11:113930425..113930471,+!p1@ZBTB16!1.21!22.13!ZBTB16;;chr2:171572699..171572713,+!p7@SP5!1.21!15.14!SP5;;chr1:201979743..201979762,+!p1@ELF3!1.21!15.14!ELF3;;chr1:214161358..214161377,+!p3@PROX1!1.21!15.14!PROX1;;chr12:115122005..115122016,-!p3@TBX3!1.20!17.47!TBX3;;chr12:52445218..52445237,+!p1@NR4A1!1.18!175.91!NR4A1;;chr20:22565370..22565388,-!p2@FOXA2!1.18!13.98!FOXA2;;chr2:25475094..25475112,-!p3@DNMT3A!1.18!13.98!DNMT3A;;chr17:46692457..46692484,-!p2@HOXB8!1.18!13.98!HOXB8;;chr18:55102598..55102623,+!p1@ONECUT2!1.18!13.98!ONECUT2;;chr12:66218212..66218244,+!p5@HMGA2!1.17!19.80!HMGA2;;chr12:115121770..115121781,-!p4@TBX3!1.14!12.81!TBX3;;chr12:3068668..3068689,+!p7@TEAD4!1.14!12.81!TEAD4;;chr17:45928521..45928539,-!p1@SP6!1.14!12.81!SP6;;chr6:15401104..15401166,+!p5@JARID2!1.14!12.81!JARID2;;chr2:122042770..122042785,-!p1@TFCP2L1!1.14!12.81!TFCP2L1;;chr1:40367668..40367684,-!p2@MYCL1!1.14!12.81!MYCL1;;chr20:42295745..42295765,+!p1@MYBL2!1.11!193.38!MYBL2;;chr12:19592405..19592492,+!p2@AEBP2!1.11!102.52!AEBP2;;chr12:66218378..66218401,+!p6@HMGA2!1.11!18.64!HMGA2;;chr20:2673383..2673441,+!p1@EBF4!1.10!18.64!EBF4;;chr12:56414851..56414871,+!p6@IKZF4!1.10!11.65!IKZF4;;chr17:7197911..7197964,-!p1@YBX2!1.10!11.65!YBX2;;chr7:73038867..73038878,-!p2@MLXIPL!1.10!11.65!MLXIPL;;chr8:76319876..76319926,+!p1@HNF4G!1.10!11.65!HNF4G;;chr3:169381420..169381535,-!p1@MECOM!1.08!12.81!MECOM;;chr11:19263160..19263176,-!p1@E2F8!1.07!12.81!E2F8;;chr3:24536253..24536328,-!p1@THRB!1.06!19.80!THRB;;chr5:174151553..174151610,+!p1@MSX2!1.06!17.47!MSX2;;chr9:127533519..127533573,-!p2@NR6A1!1.06!12.81!NR6A1;;chr15:96869511..96869525,+!p16@NR2F2!1.06!11.65!NR2F2;;chr13:28543316..28543329,-!p4@CDX2!1.06!10.48!CDX2;;chr9:127358120..127358170,-!p3@NR6A1!1.06!10.48!NR6A1;;chr2:171572483..171572501,+!p5@SP5!1.06!10.48!SP5;;chr2:171572729..171572745,+!p10@SP5!1.06!10.48!SP5;;chr2:178129619..178129633,-!p16@NFE2L2!1.06!10.48!NFE2L2;;chr1:35644482..35644486,-!p11@SFPQ!1.05!11.65!SFPQ;;chr8:86089627..86089653,+!p3@E2F5!1.05!11.65!E2F5;;chr1:212782094..212782109,+!p1@ATF3!1.04!274.93!ATF3;;chr19:12405606..12405629,-!p2@ZNF44!1.04!19.80!ZNF44;;chr1:8877692..8877732,-!p1@RERE!1.03!79.22!RERE;;chr10:114710098..114710130,+!p2@TCF7L2!1.03!73.39!TCF7L2;;chr13:72441315..72441454,-!p1@DACH1!1.03!19.80!DACH1;;chr10:77161504..77161530,-!p1@ZNF503!1.02!128.15!ZNF503;;chr12:3068544..3068597,+!p1@TEAD4!1.02!58.25!TEAD4;;chr21:34144115..34144138,-!p2@GCFC1!1.02!27.96!GCFC1;;chr12:54694758..54694805,-!p1@NFE2!1.02!11.65!NFE2;;chr8:145669791..145669834,-!p1@TONSL!1.01!26.79!TONSL;;chr12:3068634..3068656,+!p5@TEAD4!1.01!9.32!TEAD4;;chr18:55102628..55102646,+!p2@ONECUT2!1.01!9.32!ONECUT2;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!1.01!9.32!ZNF676;;chr1:8763181..8763189,-!p28@RERE!1.01!9.32!RERE;;chr12:50479109..50479146,+!p2@SMARCD1!1.00!154.94!SMARCD1;;chr19:926055..926068,+!p2@ARID3A!1.00!19.80!ARID3A;;chr11:8102846..8102892,+!p1@TUB!1.00!12.81!TUB;;chr3:40547564..40547616,+!p1@ZNF620!1.00!12.81!ZNF620;;chr1:8763440..8763460,-!p2@RERE!0.99!45.43!RERE;;chr15:74833584..74833626,+!p1@ARID3B!0.99!20.97!ARID3B;;chr1:247171347..247171366,-!p2@ZNF695!0.99!16.31!ZNF695;;chr20:33413372..33413389,-!p2@NCOA6!0.98!16.31!NCOA6;;chr19:33865009..33865090,+!p3@CEBPG!0.98!11.65!CEBPG;;chr19:52408257..52408278,-!p1@ZNF649!0.97!55.92!ZNF649;;chr12:80083722..80083766,-!p12@PAWR!0.97!11.65!PAWR;;chr12:115121962..115121987,-!p1@TBX3!0.96!69.90!TBX3;;chr12:66218598..66218645,+!p2@HMGA2!0.96!38.44!HMGA2;;chr3:32023232..32023273,+!p1@ZNF860!0.96!11.65!ZNF860;;chr2:177001290..177001315,+!p1@HOXD3!0.96!8.15!HOXD3;;chr11:113930401..113930422,+!p3@ZBTB16!0.96!8.15!ZBTB16;;chr12:121416340..121416360,+!p1@HNF1A!0.96!8.15!HNF1A;;chr19:58545454..58545498,+!p1@ZSCAN1!0.96!8.15!ZSCAN1;;chr20:50418128..50418147,-!p2@SALL4!0.96!8.15!SALL4;;chr17:46682321..46682362,-!p1@HOXB6!0.96!8.15!HOXB6;;chrY:2803415..2803468,+!p1@ZFY!0.96!8.15!ZFY;;chr9:127269661..127269719,-!p1@NR5A1!0.96!8.15!NR5A1;;chr12:6798616..6798684,-!p2@ZNF384!0.95!55.92!ZNF384;;chr22:42666593..42666623,-!p@chr22:42666593..42666623,-!0.95!18.64!TCF20;;chr10:70320074..70320106,+!p1@TET1!0.95!16.31!TET1;;chr20:50159198..50159299,-!p1@NFATC2!0.95!11.65!NFATC2;;chr20:62680984..62680999,-!p1@SOX18!0.95!10.48!SOX18;;chr18:3449330..3449344,+!p10@TGIF1!0.95!10.48!TGIF1;;chr6:41514178..41514192,+!p4@FOXP4!0.95!9.32!FOXP4;;chr3:150126759..150126784,+!p2@TSC22D2!0.94!36.11!TSC22D2;;chr9:127533582..127533615,-!p1@NR6A1!0.94!11.65!NR6A1;;chr17:41622834..41622883,-!p6@ETV4!0.94!9.32!ETV4;;chr15:41913690..41913753,+!p2@MGA!0.93!18.64!MGA;;chr3:71355163..71355209,-!p5@FOXP1!0.93!10.48!FOXP1;;chr3:126076264..126076305,-!p2@KLF15!0.92!10.48!KLF15;;chr20:42295713..42295738,+!p2@MYBL2!0.91!44.27!MYBL2;;chr19:58326246..58326262,-!p2@ZNF552!0.91!17.47!ZNF552;;chr12:66218443..66218461,+!p8@HMGA2!0.91!9.32!HMGA2;;chr12:133613902..133613924,+!p4@ZNF84!0.90!9.32!ZNF84;;chr12:54380036..54380091,+!p4@HOXC10!0.90!6.99!HOXC10;;chr12:54694807..54694832,-!p3@NFE2!0.90!6.99!NFE2;;chr14:38064429..38064486,-!p1@FOXA1!0.90!6.99!FOXA1;;chr18:19749504..19749515,+!p5@GATA6!0.90!6.99!GATA6;;chr7:20826426..20826432,-!p2@SP8!0.90!6.99!SP8;;chr7:73038889..73038905,-!p3@MLXIPL!0.90!6.99!MLXIPL;;chr8:145701166..145701187,-!p2@FOXH1!0.90!6.99!FOXH1;;chr19:54024369..54024390,+!p22@ZNF331!0.90!6.99!ZNF331;;chr8:37553292..37553317,+!p1@ZNF703!0.89!168.92!ZNF703;;chr20:45142154..45142227,-!p1@ZNF334!0.89!13.98!ZNF334;;chr3:185826814..185826825,-!p3@ETV5!0.89!12.81!ETV5;;chr19:52408285..52408310,-!p3@ZNF649!0.88!16.31!ZNF649;;chr17:46687959..46688007,-!p2@HOXB7!0.88!9.32!HOXB7;;chr17:41277372..41277418,-!p1@BRCA1!0.87!24.46!BRCA1;;chr6:12008986..12009016,+!p3@HIVEP1!0.87!20.97!HIVEP1;;chr3:170075357..170075368,+!p3@SKIL!0.87!10.48!SKIL;;chr3:126076242..126076257,-!p1@KLF15!0.87!8.15!KLF15;;chr12:66218152..66218174,+!p10@HMGA2!0.87!6.99!HMGA2;;chr14:61191018..61191048,-!p1@SIX4!0.86!13.98!SIX4;;chr1:40367530..40367597,-!p1@MYCL1!0.86!11.65!MYCL1;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.85!61.74!ZNF595;;chr15:66994663..66994680,+!p1@SMAD6!0.85!15.14!SMAD6;;chr5:76383133..76383186,-!p2@ZBED3!0.85!12.81!ZBED3;;chr8:67525443..67525459,-!p2@MYBL1!0.85!9.32!MYBL1;;chr12:80084737..80084763,-!p3@PAWR!0.84!23.30!PAWR;;chr1:164528616..164528660,+!p5@PBX1!0.84!12.81!PBX1;;chr3:33482052..33482116,-!p2@UBP1!0.84!9.32!UBP1;;chr5:137801160..137801176,+!p1@EGR1!0.83!616.26!EGR1;;chr1:204042275..204042286,+!p4@SOX13!0.83!9.32!SOX13;;chrX:84498989..84499003,+!p1@ZNF711!0.83!8.15!ZNF711;;chr19:57352109..57352153,-!p2@ZIM2!0.83!5.82!ZIM2;;chr1:201979703..201979721,+!p2@ELF3!0.83!5.82!ELF3;;chr1:27240455..27240474,-!p1@NR0B2!0.83!5.82!NR0B2;;chr20:50419055..50419066,-!p3@SALL4!0.83!5.82!SALL4;;chr21:38071430..38071456,+!p1@SIM2!0.83!5.82!SIM2;;chr2:171571909..171571920,+!p9@SP5!0.83!5.82!SP5;;chr2:171572525..171572547,+!p6@SP5!0.83!5.82!SP5;;chr3:52002412..52002433,-!p7@PCBP4!0.83!5.82!PCBP4;;chr3:69811858..69811881,+!p5@MITF!0.83!5.82!MITF;;chr12:24102576..24102623,-!p2@SOX5!0.83!5.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|sample_dev_stage=
+
|ffid_belonging_in_development=CL:0000134,CL:0000223,UBERON:0001041,UBERON:0002532,UBERON:0006595,UBERON:0003104,UBERON:0004161,UBERON:0009497,UBERON:0010316
|sample_tissue=liver
 
|sample_donor(cell lot)=
 
|sample_sex=male
 
|sample_age=1
 
|sample_ethnicity=J
 
|rna_rin=
 
|rna_od260/230=2.15000
 
|rna_od260/280=2.07000
 
|sample_cell_type=hepatoblast
 
|sample_cell_line=HuH-6
 
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
 
|sample_experimental_condition=
 
|sample_disease=hepatoblastoma
 
|rna_sample_type=total RNA
 
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
 
|rna_weight_ug=180.00225
 
|rna_concentration=2.40003
 
|sample_note=
 
|profile_hcage=CNhs11742,LSID819,release009,COMPLETED
 
|profile_cagescan=,,,
 
|profile_srnaseq=,,,
 
|profile_rnaseq=,,,
 
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000255,CL:0000548
 
|ancestors_in_anatomy_facet=UBERON:0000015,UBERON:0000061,UBERON:0000062,UBERON:0000077,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000916,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0000949,UBERON:0001007,UBERON:0001041,UBERON:0001048,UBERON:0001062,UBERON:0001555,UBERON:0002050,UBERON:0002100,UBERON:0002107,UBERON:0002330,UBERON:0002365,UBERON:0002368,UBERON:0002405,UBERON:0002417,UBERON:0002423,UBERON:0002530,UBERON:0002532,UBERON:0003104,UBERON:0003894,UBERON:0004119,UBERON:0004120,UBERON:0004161,UBERON:0004185,UBERON:0004921,UBERON:0005057,UBERON:0005172,UBERON:0005173,UBERON:0005177,UBERON:0005256,UBERON:0005423,UBERON:0006235,UBERON:0006925,UBERON:0007026,UBERON:0008835,UBERON:0008836,UBERON:0009142
 
|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:305,DOID:4,DOID:7
 
|sample_description=
 
 
 
 
|fonse_cell_line=FF:0100224,FF:0101120
 
|fonse_cell_line=FF:0100224,FF:0101120
 
|fonse_cell_line_closure=FF:0100224,FF:0101120
 
|fonse_cell_line_closure=FF:0100224,FF:0101120
Line 67: Line 40:
 
|fonse_treatment=
 
|fonse_treatment=
 
|fonse_treatment_closure=
 
|fonse_treatment_closure=
 +
|has_quality=
 +
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatoblastoma%2520cell%2520line%253aHuH-6.CNhs11742.10633-108I3.hg19.nobarcode.bam
 +
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatoblastoma%2520cell%2520line%253aHuH-6.CNhs11742.10633-108I3.hg19.ctss.bed.gz
 +
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatoblastoma%2520cell%2520line%253aHuH-6.CNhs11742.10633-108I3.hg19.nobarcode.rdna.fa.gz
 +
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/hepatoblastoma%2520cell%2520line%253aHuH-6.CNhs11742.10633-108I3.hg38.nobarcode.bam
 +
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/hepatoblastoma%2520cell%2520line%253aHuH-6.CNhs11742.10633-108I3.hg38.nobarcode.ctss.bed.gz
 +
|id=FF:10633-108I3
 +
|is_a=EFO:0002091;;FF:0000210;;FF:0101670
 +
|is_obsolete=
 +
|library_id=CNhs11742
 +
|library_id_phase_based=2:CNhs11742
 +
|microRNAs=
 +
|microRNAs_nn=
 +
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10633
 +
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10633
 +
|name=hepatoblastoma cell line:HuH-6
 +
|namespace=FANTOM5
 +
|part_of=
 +
|profile_cagescan=,,,
 +
|profile_hcage=CNhs11742,LSID819,release009,COMPLETED
 +
|profile_rnaseq=
 +
|profile_srnaseq=,,,
 +
|refex=http://refex.dbcls.jp/genelist.php?lang
 +
|repeat_enrich_byfamily=0,0,0,0,0,0.335449775449978,0,-0.160318030086386,0,0.016247181133151,0.287764880651322,0,0,0,0.335449775449978,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0.237491879181921,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.0218251707589763,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0.335449775449978,-0.0969923612426051,0,0,0.425090041012303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00846117877100933,0,0,0,0,0,0,0,0,0,0,0.352912699373516,0.0500194314168315,0,0,0,0.335449775449978,0.554682604308827,0.187881776972371,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0,0.215124325731973,0,0,0,0,0,0
 +
|repeat_enrich_byname=0,0,0,0,0.554682604308827,0,0.335449775449978,0.335449775449978,0,0,0,0,0,0,0,0,0.275254792939836,0,0.178631736794525,0.609288856699756,0,0,0.559738894728346,0,0,0,0,0.5224336682254,0,0.5224336682254,0.5224336682254,0,-0.128119866952565,0,-0.0504125515893149,0,0,0.335449775449978,0,0,-0.305472230898407,0,0.202143938462104,0.454089407148032,0,0,0,0,-0.270240669334324,0,-0.120879483793741,0.252729607126561,0,-0.362620698464996,0.288645116557598,0,0,0,-0.604307182190975,-0.68292913794291,0,0,-0.121779851751874,-0.01362473083567,0,0,-0.391044581551635,0,0.158745130861382,-0.248868050382253,0,0.0434003180893305,0,0,0,0,0,0,0,0,0,0,0,0.277956308628541,0.00846117877100933,0,0,0.335449775449978,0,-0.236240976813951,0,0,-0.0378363805065886,-0.0152862378468804,0.0503341322188295,1.32640495132253,0,-0.302389727009913,-0.00999852718244456,0.528027178629903,-0.8780733087367,-0.147401849371139,-0.189981719549847,0,-0.461588021000005,0.116260940252826,0.0100296193791391,-0.0157841052068157,0.126915221519284,-0.397318739929446,-0.186826427873275,0.335449775449978,0.335449775449978,0,-0.112425831690896,0,0,-0.154664939026795,0.207928703892375,-0.503262548750725,-0.0592644493818165,0.179663772253389,0.15551202212378,0.504594358879932,-0.457436452896595,-0.0511922210653525,0.260555203453514,0,0,0.0692510716602437,0.0218064451485757,0.274205107371787,0.48625044619846,0,0.477667436388925,-0.0683442610773682,0.167724887724989,-0.2853913151856,0.31574016252557,0,0,0.255312537486246,0,0,0,0,0,0.0977233840943514,-0.0170584748047661,0.601234206802113,0,0.156294640905642,0,0.02907289742068,0,-0.191226717851593,-0.146009897457394,-0.298074152361292,0.366310439307978,0,0.172385521755248,-0.174228200722713,0.197945198617782,-0.422394805391737,-0.0584468268118252,0.283194126883729,0.125709116607333,0.352912699373516,0.855533204174988,0,-0.0881268324752877,0,-0.88354475051838,-0.679498131621524,0.121756299762278,0.284781764632676,0.335449775449978,-0.0768723164227378,0,0.379963030692986,0,-0.35753246244147,-0.54043375147324,0.394800393776972,-0.496614676696539,0,-0.191871722545523,-0.788130937773974,0,-0.0463987522385103,-0.0214477663651444,0,-0.150367083334639,0.0551080327106448,0.282433437633666,0.0287354310457944,0,-0.137362202843124,0,0,-0.261479617469158,-0.235476037764389,0,0.565598664368026,0.35244198398651,0.455901173283815,0.636832925788293,0,0,0.456376281384415,0.0607542472728104,0,0.71222528228605,-0.0782003540977454,0.588240560857344,-0.253326341486756,-0.070153404751998,-0.108622809454255,0,0,-0.177527765965176,0,-0.141597552655978,0,0,-0.249881296598824,-0.116628112990133,0,0,0,-0.0275408028327752,0,-0.0589565109853561,0,0,0,0,0,0.271399137697848,0.785503552240081,0,0,0,0,0,0,0,-0.129406115216345,0,0,-1.2568810633697,-0.0342552785692398,-0.12301741567642,0,0,0,0,0.119726372896504,0.132213213355254,0,-0.131862706497632,0,0.167724887724989,0,0,0.249308785660767,0,0,0.167724887724989,0,-0.057730457053664,-0.26186695834425,0,0,0,0.375763553944743,0,0,0,0,-0.239915846313778,0,0,0,0,-0.189633409408113,-0.0815818795468414,0,0.28815295764776,-0.298531804077361,0.690473270550502,0,0,0.261086536435513,0,0,0.17207956318273,0,0,-0.0209247759461169,0,0,0,0,0.5224336682254,0,0.74733038580015,0.103948918541259,0,0,0,0,0,0,0,0,0,0,-0.698745012639747,-0.0922240566585104,0,0,0,0,0,0,0,0.237110811033797,-0.142223977942236,0,0,0,0,0,0,0,0,0.281378059559985,0,0,0.5224336682254,0,0,-0.0969923612426051,0,0,0,0,0.575529761302645,0,0,0.375355823353019,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212130689414531,0.016247181133151,0,0,0,0,0,0,0,-0.27483329820609,0,0,0,0,-0.113884373708977,0,0,0,0.729293383568502,0,-0.160318030086386,0.335449775449978,0,0,0,0,0,0.167724887724989,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335562582781625,0,-0.28720751597291,-0.123202864573785,0,0,-0.0649034649080525,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0962259712900034,0,0,0,0,0,0,0,0.237491879181921,0,0.167724887724989,0.430400858424874,0,0,0,0,0,0,0.038382137116557,-0.0220035657104474,-0.039707915585663,0,0,0,0.113339315242534,0,0,0,0.335449775449978,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335449775449978,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.133713524449572,0,0,0,0,0,0,0,0,0,0.335449775449978,0,0,0,0,0,0,0.2612168341127,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335449775449978,0,0,0,0,0,0,0,0,0,0,0,-0.0699790915004164,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0280703742903121,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.268823059936895,0,0,0.226098408613648,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0352984490200202,0.215124325731973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26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 +
|rna_box=108
 +
|rna_catalog_number=
 +
|rna_concentration=2.40003
 +
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
 +
|rna_lot_number=
 +
|rna_od260/230=2.15
 +
|rna_od260/280=2.07
 +
|rna_position=I3
 +
|rna_rin=
 +
|rna_sample_type=total RNA
 +
|rna_tube_id=108I3
 +
|rna_weight_ug=180.00225
 +
|sample_age=1
 +
|sample_category=cell lines
 +
|sample_cell_catalog=RCB1367
 +
|sample_cell_line=HuH-6
 +
|sample_cell_lot=
 +
|sample_cell_type=hepatoblast
 +
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
 +
|sample_company=RIKEN Bioresource centre
 +
|sample_description=
 +
|sample_dev_stage=
 +
|sample_disease=hepatoblastoma
 +
|sample_donor(cell lot)=
 +
|sample_ethnicity=J
 +
|sample_experimental_condition=
 +
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.11688235792156e-258!GO:0043226;organelle;9.73233166373664e-220!GO:0043229;intracellular organelle;1.42806821800054e-218!GO:0043227;membrane-bound organelle;2.06267620483955e-213!GO:0043231;intracellular membrane-bound organelle;5.70237024378153e-213!GO:0005737;cytoplasm;4.35008090034648e-152!GO:0044422;organelle part;1.45137115270448e-141!GO:0044446;intracellular organelle part;2.11941833905905e-139!GO:0044237;cellular metabolic process;2.07547020328492e-115!GO:0005634;nucleus;3.19766816521494e-113!GO:0044238;primary metabolic process;8.37725493308258e-110!GO:0044444;cytoplasmic part;7.89563967032211e-100!GO:0043170;macromolecule metabolic process;5.76545411417457e-98!GO:0032991;macromolecular complex;1.42025690046275e-90!GO:0003723;RNA binding;2.70699960087919e-83!GO:0044428;nuclear part;1.1673489326685e-81!GO:0043233;organelle lumen;1.38341384239502e-81!GO:0031974;membrane-enclosed lumen;1.38341384239502e-81!GO:0030529;ribonucleoprotein complex;6.47789839435931e-81!GO:0005515;protein binding;3.55698160278953e-64!GO:0043283;biopolymer metabolic process;9.03456818247351e-59!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.70972563513166e-58!GO:0006396;RNA processing;6.69798149087977e-58!GO:0005739;mitochondrion;2.45925509797758e-57!GO:0010467;gene expression;3.71693949902117e-56!GO:0031981;nuclear lumen;4.97962841513957e-53!GO:0016071;mRNA metabolic process;1.43193374384019e-45!GO:0043228;non-membrane-bound organelle;1.35266792547975e-44!GO:0043232;intracellular non-membrane-bound organelle;1.35266792547975e-44!GO:0043234;protein complex;1.78876915180632e-44!GO:0006412;translation;1.78876915180632e-44!GO:0016043;cellular component organization and biogenesis;3.37191864121648e-44!GO:0019538;protein metabolic process;3.56604022299589e-44!GO:0003676;nucleic acid binding;9.22052966737627e-44!GO:0005840;ribosome;1.39934514485343e-42!GO:0044267;cellular protein metabolic process;1.72056627309935e-40!GO:0008380;RNA splicing;1.9704301415117e-40!GO:0044260;cellular macromolecule metabolic process;4.49058725941065e-40!GO:0044249;cellular biosynthetic process;3.04977616475474e-38!GO:0006259;DNA metabolic process;6.90673146333212e-38!GO:0009058;biosynthetic process;1.46216498992344e-37!GO:0006397;mRNA processing;2.4213331437865e-37!GO:0033036;macromolecule localization;9.643131983889e-37!GO:0044429;mitochondrial part;2.29519204341456e-36!GO:0006996;organelle organization and biogenesis;3.68158009107745e-36!GO:0003735;structural constituent of ribosome;8.43701733207584e-36!GO:0031090;organelle membrane;3.82577371401164e-35!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.8691144867129e-35!GO:0033279;ribosomal subunit;9.79242556318563e-35!GO:0015031;protein transport;5.14986983133801e-34!GO:0065003;macromolecular complex assembly;1.53276940926438e-33!GO:0031967;organelle envelope;4.44669108347598e-32!GO:0016070;RNA metabolic process;5.07754699652693e-32!GO:0031975;envelope;9.07761039975933e-32!GO:0008104;protein localization;1.27318913549824e-31!GO:0007049;cell cycle;3.7369235232225e-31!GO:0009059;macromolecule biosynthetic process;4.89537608730946e-31!GO:0045184;establishment of protein localization;6.13527693860174e-31!GO:0005654;nucleoplasm;1.44711310713436e-30!GO:0046907;intracellular transport;9.16586575997024e-30!GO:0022607;cellular component assembly;2.61771802296812e-29!GO:0005681;spliceosome;1.01393173062094e-28!GO:0005829;cytosol;7.97766393348196e-28!GO:0000166;nucleotide binding;5.22719918588672e-27!GO:0044451;nucleoplasm part;6.54599072363207e-26!GO:0005730;nucleolus;3.71640869040209e-25!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.9975636729156e-25!GO:0006886;intracellular protein transport;4.8211445436344e-24!GO:0005694;chromosome;1.81627058976271e-23!GO:0022402;cell cycle process;4.1684409650334e-23!GO:0006974;response to DNA damage stimulus;4.60473133598546e-22!GO:0022618;protein-RNA complex assembly;3.63126370942425e-21!GO:0019866;organelle inner membrane;6.76732541827813e-21!GO:0000278;mitotic cell cycle;1.13793886723691e-20!GO:0044445;cytosolic part;2.32075407259958e-20!GO:0005740;mitochondrial envelope;2.32075407259958e-20!GO:0051276;chromosome organization and biogenesis;2.70472662126225e-20!GO:0044427;chromosomal part;3.31101485411785e-20!GO:0031980;mitochondrial lumen;5.25597015249049e-20!GO:0005759;mitochondrial matrix;5.25597015249049e-20!GO:0015935;small ribosomal subunit;3.71251809794796e-19!GO:0031966;mitochondrial membrane;4.32333625658255e-19!GO:0016874;ligase activity;8.06199946123886e-19!GO:0005743;mitochondrial inner membrane;9.0056589714778e-19!GO:0044265;cellular macromolecule catabolic process;1.29232378845405e-18!GO:0006457;protein folding;1.49608328185143e-18!GO:0032559;adenyl ribonucleotide binding;2.59280779666659e-18!GO:0005524;ATP binding;3.86798764066897e-18!GO:0006281;DNA repair;4.91976088266679e-18!GO:0030554;adenyl nucleotide binding;5.5004889976056e-18!GO:0051649;establishment of cellular localization;1.17676554010926e-17!GO:0051641;cellular localization;1.98593086028789e-17!GO:0051301;cell division;2.09654800952931e-17!GO:0044248;cellular catabolic process;3.03260307038163e-17!GO:0032553;ribonucleotide binding;4.43393778660464e-17!GO:0032555;purine ribonucleotide binding;4.43393778660464e-17!GO:0017111;nucleoside-triphosphatase activity;4.54745823292458e-17!GO:0016462;pyrophosphatase activity;4.54745823292458e-17!GO:0006512;ubiquitin cycle;5.01995957198583e-17!GO:0043285;biopolymer catabolic process;5.26433021342136e-17!GO:0017076;purine nucleotide binding;5.33308195563309e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.98175753045374e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;8.37674727039957e-17!GO:0006119;oxidative phosphorylation;8.50424616976209e-17!GO:0015934;large ribosomal subunit;9.1740579276989e-17!GO:0006325;establishment and/or maintenance of chromatin architecture;1.00263093910136e-16!GO:0008135;translation factor activity, nucleic acid binding;1.76374566899132e-16!GO:0009719;response to endogenous stimulus;2.44355030354969e-16!GO:0006323;DNA packaging;5.47405124260466e-16!GO:0016887;ATPase activity;7.09163061655225e-16!GO:0044455;mitochondrial membrane part;1.01844313638877e-15!GO:0000087;M phase of mitotic cell cycle;1.16889245162339e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;1.16889245162339e-15!GO:0000375;RNA splicing, via transesterification reactions;1.16889245162339e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.16889245162339e-15!GO:0009057;macromolecule catabolic process;1.19954914681667e-15!GO:0042623;ATPase activity, coupled;1.69156171817137e-15!GO:0022403;cell cycle phase;1.98967076477132e-15!GO:0007067;mitosis;2.5262790973022e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;3.29944548955606e-15!GO:0006260;DNA replication;3.9206830944232e-15!GO:0019941;modification-dependent protein catabolic process;7.09630457362311e-15!GO:0043632;modification-dependent macromolecule catabolic process;7.09630457362311e-15!GO:0042254;ribosome biogenesis and assembly;7.45841090828095e-15!GO:0044257;cellular protein catabolic process;7.56518085297163e-15!GO:0051082;unfolded protein binding;7.59895121795574e-15!GO:0016604;nuclear body;8.23224067295813e-15!GO:0006511;ubiquitin-dependent protein catabolic process;1.14439553429199e-14!GO:0004386;helicase activity;3.32783057624396e-14!GO:0012505;endomembrane system;8.46904657865181e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.07849615255078e-13!GO:0000785;chromatin;1.08377700499246e-13!GO:0031965;nuclear membrane;1.20879580557322e-13!GO:0006913;nucleocytoplasmic transport;1.43805000597293e-13!GO:0048770;pigment granule;1.64980504017669e-13!GO:0042470;melanosome;1.64980504017669e-13!GO:0006605;protein targeting;2.38990565449708e-13!GO:0051169;nuclear transport;2.80347573709368e-13!GO:0051186;cofactor metabolic process;3.13956130361724e-13!GO:0016607;nuclear speck;3.97615287160087e-13!GO:0008026;ATP-dependent helicase activity;5.9882457166194e-13!GO:0000279;M phase;9.64829929762365e-13!GO:0044453;nuclear membrane part;1.12462662019254e-12!GO:0006413;translational initiation;1.37824013503498e-12!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.74229626511786e-12!GO:0008134;transcription factor binding;1.85083247458163e-12!GO:0003743;translation initiation factor activity;2.30309914009774e-12!GO:0006399;tRNA metabolic process;2.92844058471478e-12!GO:0006333;chromatin assembly or disassembly;2.92844058471478e-12!GO:0006403;RNA localization;2.96228703719146e-12!GO:0005746;mitochondrial respiratory chain;3.9538255517255e-12!GO:0050657;nucleic acid transport;5.07213014053819e-12!GO:0051236;establishment of RNA localization;5.07213014053819e-12!GO:0050658;RNA transport;5.07213014053819e-12!GO:0030163;protein catabolic process;5.49375564704024e-12!GO:0005643;nuclear pore;5.66401311179995e-12!GO:0005635;nuclear envelope;6.5534271968001e-12!GO:0051726;regulation of cell cycle;7.53219871496085e-12!GO:0006446;regulation of translational initiation;8.18733042044331e-12!GO:0043412;biopolymer modification;8.18733042044331e-12!GO:0050136;NADH dehydrogenase (quinone) activity;8.18733042044331e-12!GO:0003954;NADH dehydrogenase activity;8.18733042044331e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;8.18733042044331e-12!GO:0016568;chromatin modification;9.27732170947266e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);9.42310100582711e-12!GO:0000074;regulation of progression through cell cycle;1.15726543270449e-11!GO:0005761;mitochondrial ribosome;1.82996118651124e-11!GO:0000313;organellar ribosome;1.82996118651124e-11!GO:0006732;coenzyme metabolic process;2.51555506979987e-11!GO:0050794;regulation of cellular process;3.57950285284561e-11!GO:0005783;endoplasmic reticulum;7.62562433361007e-11!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;7.91174984703226e-11!GO:0004812;aminoacyl-tRNA ligase activity;7.91174984703226e-11!GO:0016875;ligase activity, forming carbon-oxygen bonds;7.91174984703226e-11!GO:0048193;Golgi vesicle transport;1.12456218155604e-10!GO:0009056;catabolic process;1.18293980243301e-10!GO:0046930;pore complex;2.1222008093661e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.66451504338347e-10!GO:0051028;mRNA transport;3.30212472463551e-10!GO:0043038;amino acid activation;4.70522919243036e-10!GO:0006418;tRNA aminoacylation for protein translation;4.70522919243036e-10!GO:0043039;tRNA aminoacylation;4.70522919243036e-10!GO:0006364;rRNA processing;5.12490863769195e-10!GO:0042775;organelle ATP synthesis coupled electron transport;5.36286434542887e-10!GO:0042773;ATP synthesis coupled electron transport;5.36286434542887e-10!GO:0030964;NADH dehydrogenase complex (quinone);5.43651219092031e-10!GO:0045271;respiratory chain complex I;5.43651219092031e-10!GO:0005747;mitochondrial respiratory chain complex I;5.43651219092031e-10!GO:0044432;endoplasmic reticulum part;6.37338734023238e-10!GO:0006464;protein modification process;7.53981176753226e-10!GO:0043687;post-translational protein modification;8.07496625613195e-10!GO:0016072;rRNA metabolic process;8.87143683529354e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.29592725020589e-09!GO:0065004;protein-DNA complex assembly;1.33780682997696e-09!GO:0019222;regulation of metabolic process;3.45653292436952e-09!GO:0017038;protein import;3.45653292436952e-09!GO:0006261;DNA-dependent DNA replication;3.5585341956045e-09!GO:0008565;protein transporter activity;4.84216314071225e-09!GO:0016192;vesicle-mediated transport;4.9733229423008e-09!GO:0005793;ER-Golgi intermediate compartment;6.07219748042996e-09!GO:0000502;proteasome complex (sensu Eukaryota);6.69907133288198e-09!GO:0030532;small nuclear ribonucleoprotein complex;7.03106639827671e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;8.27972760435369e-09!GO:0006366;transcription from RNA polymerase II promoter;8.50279455026039e-09!GO:0065002;intracellular protein transport across a membrane;1.06559955924425e-08!GO:0000245;spliceosome assembly;1.13842884397015e-08!GO:0006461;protein complex assembly;1.41628163686509e-08!GO:0012501;programmed cell death;1.74182308838389e-08!GO:0005667;transcription factor complex;1.74838866302238e-08!GO:0015630;microtubule cytoskeleton;1.7743209007578e-08!GO:0006915;apoptosis;2.0190077576901e-08!GO:0006334;nucleosome assembly;5.22900318925752e-08!GO:0000775;chromosome, pericentric region;5.30111689425541e-08!GO:0043566;structure-specific DNA binding;5.42170884384421e-08!GO:0031497;chromatin assembly;6.86048267828011e-08!GO:0005794;Golgi apparatus;7.04114833089282e-08!GO:0003712;transcription cofactor activity;8.70335563839645e-08!GO:0009055;electron carrier activity;9.9627101869983e-08!GO:0050789;regulation of biological process;1.22893606028214e-07!GO:0005819;spindle;1.25530573171086e-07!GO:0008219;cell death;1.25530573171086e-07!GO:0016265;death;1.25530573171086e-07!GO:0006082;organic acid metabolic process;1.4229915853704e-07!GO:0019752;carboxylic acid metabolic process;1.52076068351076e-07!GO:0031323;regulation of cellular metabolic process;1.60439697541788e-07!GO:0008639;small protein conjugating enzyme activity;2.58831561469379e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.72585443528626e-07!GO:0006752;group transfer coenzyme metabolic process;2.8407275219685e-07!GO:0005768;endosome;3.0553659208e-07!GO:0043623;cellular protein complex assembly;3.31611596779562e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.36365516789383e-07!GO:0051329;interphase of mitotic cell cycle;4.6673225086349e-07!GO:0004842;ubiquitin-protein ligase activity;5.12237582011622e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.16823147611049e-07!GO:0005813;centrosome;5.50921873043991e-07!GO:0006350;transcription;6.38382582735143e-07!GO:0006402;mRNA catabolic process;6.43446386196679e-07!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.34236057125359e-07!GO:0003697;single-stranded DNA binding;1.0032556804069e-06!GO:0032446;protein modification by small protein conjugation;1.08544868128429e-06!GO:0006520;amino acid metabolic process;1.11549220480033e-06!GO:0005789;endoplasmic reticulum membrane;1.2266824359925e-06!GO:0051188;cofactor biosynthetic process;1.28997887916736e-06!GO:0051168;nuclear export;1.51424508974365e-06!GO:0019787;small conjugating protein ligase activity;1.51811159205077e-06!GO:0006163;purine nucleotide metabolic process;1.5638980001107e-06!GO:0003724;RNA helicase activity;1.73076498414978e-06!GO:0005815;microtubule organizing center;1.73900268648247e-06!GO:0015986;ATP synthesis coupled proton transport;1.95638160979246e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.95638160979246e-06!GO:0016567;protein ubiquitination;1.95638160979246e-06!GO:0006606;protein import into nucleus;2.21163982383207e-06!GO:0016787;hydrolase activity;2.30069034423644e-06!GO:0003690;double-stranded DNA binding;2.54151353436236e-06!GO:0009259;ribonucleotide metabolic process;3.05336333830015e-06!GO:0051170;nuclear import;3.31499186870288e-06!GO:0008168;methyltransferase activity;3.50407635143148e-06!GO:0008094;DNA-dependent ATPase activity;3.65535882170601e-06!GO:0006164;purine nucleotide biosynthetic process;3.7007403179729e-06!GO:0016564;transcription repressor activity;3.82991473492815e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.91715735422687e-06!GO:0010468;regulation of gene expression;4.95362548802783e-06!GO:0006401;RNA catabolic process;4.95362548802783e-06!GO:0000075;cell cycle checkpoint;5.02958228101201e-06!GO:0016741;transferase activity, transferring one-carbon groups;5.42173242858621e-06!GO:0019829;cation-transporting ATPase activity;5.42173242858621e-06!GO:0009108;coenzyme biosynthetic process;5.86056957998071e-06!GO:0051325;interphase;6.39118549488367e-06!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.30167666679798e-06!GO:0016740;transferase activity;8.32397831941689e-06!GO:0045259;proton-transporting ATP synthase complex;8.73782452455603e-06!GO:0006888;ER to Golgi vesicle-mediated transport;9.38361374557012e-06!GO:0009260;ribonucleotide biosynthetic process;9.76594862641286e-06!GO:0009150;purine ribonucleotide metabolic process;9.99792865748813e-06!GO:0006754;ATP biosynthetic process;1.00177553873249e-05!GO:0006753;nucleoside phosphate metabolic process;1.00177553873249e-05!GO:0006302;double-strand break repair;1.15258129773434e-05!GO:0048523;negative regulation of cellular process;1.16376176821345e-05!GO:0046034;ATP metabolic process;1.27555240276808e-05!GO:0015078;hydrogen ion transmembrane transporter activity;1.41161934625717e-05!GO:0003682;chromatin binding;1.56306981539682e-05!GO:0009060;aerobic respiration;1.56565942815947e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.62138527979387e-05!GO:0005657;replication fork;1.68152282665557e-05!GO:0044452;nucleolar part;2.01102625410844e-05!GO:0016853;isomerase activity;2.0597387518261e-05!GO:0009199;ribonucleoside triphosphate metabolic process;2.07800485300819e-05!GO:0045786;negative regulation of progression through cell cycle;2.07800485300819e-05!GO:0006519;amino acid and derivative metabolic process;2.1355158847967e-05!GO:0016779;nucleotidyltransferase activity;2.15610621284755e-05!GO:0043069;negative regulation of programmed cell death;2.40739250643898e-05!GO:0009152;purine ribonucleotide biosynthetic process;2.40739250643898e-05!GO:0006793;phosphorus metabolic process;2.40797461009402e-05!GO:0006796;phosphate metabolic process;2.40797461009402e-05!GO:0009142;nucleoside triphosphate biosynthetic process;2.43988165354741e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.43988165354741e-05!GO:0016881;acid-amino acid ligase activity;2.94599566135163e-05!GO:0000786;nucleosome;3.05120822709265e-05!GO:0003729;mRNA binding;3.0613930650079e-05!GO:0016469;proton-transporting two-sector ATPase complex;3.10710606510327e-05!GO:0003714;transcription corepressor activity;3.18284761009466e-05!GO:0043066;negative regulation of apoptosis;3.34575879640817e-05!GO:0032774;RNA biosynthetic process;3.38743340738973e-05!GO:0042981;regulation of apoptosis;3.63765956263494e-05!GO:0009141;nucleoside triphosphate metabolic process;3.84228462100852e-05!GO:0009308;amine metabolic process;3.93360089775449e-05!GO:0051246;regulation of protein metabolic process;3.97482079682397e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.07726731038123e-05!GO:0009144;purine nucleoside triphosphate metabolic process;4.07726731038123e-05!GO:0006351;transcription, DNA-dependent;4.09448339861979e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.27480677432782e-05!GO:0043067;regulation of programmed cell death;4.43409702044671e-05!GO:0005788;endoplasmic reticulum lumen;4.57827928453674e-05!GO:0003677;DNA binding;4.95718330226829e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.00989006093091e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.00989006093091e-05!GO:0000151;ubiquitin ligase complex;5.82874903491598e-05!GO:0031324;negative regulation of cellular metabolic process;6.12551982447144e-05!GO:0006613;cotranslational protein targeting to membrane;6.48659258606605e-05!GO:0008186;RNA-dependent ATPase activity;6.59805916447477e-05!GO:0005762;mitochondrial large ribosomal subunit;7.29838264370178e-05!GO:0000315;organellar large ribosomal subunit;7.29838264370178e-05!GO:0003899;DNA-directed RNA polymerase activity;7.51935673634668e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;7.68323564099959e-05!GO:0000314;organellar small ribosomal subunit;8.41272956631586e-05!GO:0005763;mitochondrial small ribosomal subunit;8.41272956631586e-05!GO:0007051;spindle organization and biogenesis;8.6549540207207e-05!GO:0051187;cofactor catabolic process;0.000109597520667209!GO:0016859;cis-trans isomerase activity;0.000116954837352235!GO:0009892;negative regulation of metabolic process;0.000125233045905886!GO:0042802;identical protein binding;0.00013357205167139!GO:0048519;negative regulation of biological process;0.000143163785519672!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000147557916145437!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.000156375805871081!GO:0051052;regulation of DNA metabolic process;0.000158833758913837!GO:0046983;protein dimerization activity;0.000162021973188927!GO:0030120;vesicle coat;0.000181199555913584!GO:0030662;coated vesicle membrane;0.000181199555913584!GO:0006807;nitrogen compound metabolic process;0.000186154200352966!GO:0005769;early endosome;0.000199256391305105!GO:0006730;one-carbon compound metabolic process;0.000201413968129237!GO:0004004;ATP-dependent RNA helicase activity;0.000204587068479148!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000204587068479148!GO:0006383;transcription from RNA polymerase III promoter;0.000206380465471563!GO:0043021;ribonucleoprotein binding;0.000207744986903412!GO:0006405;RNA export from nucleus;0.000208464779918951!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000208464779918951!GO:0045333;cellular respiration;0.000210649180000145!GO:0000776;kinetochore;0.00022597454862358!GO:0045449;regulation of transcription;0.000228781799401603!GO:0006338;chromatin remodeling;0.000233594225541033!GO:0019899;enzyme binding;0.000233635078769487!GO:0009109;coenzyme catabolic process;0.00029251202958261!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000309623275062242!GO:0006099;tricarboxylic acid cycle;0.000309969174598443!GO:0046356;acetyl-CoA catabolic process;0.000309969174598443!GO:0065007;biological regulation;0.000310460428673712!GO:0009117;nucleotide metabolic process;0.00031922967610285!GO:0007005;mitochondrion organization and biogenesis;0.000319636581465376!GO:0048475;coated membrane;0.000325507587534167!GO:0030117;membrane coat;0.000325507587534167!GO:0016363;nuclear matrix;0.000345770941945887!GO:0008022;protein C-terminus binding;0.000345911023102438!GO:0006084;acetyl-CoA metabolic process;0.000362452580342506!GO:0044440;endosomal part;0.000378637828722697!GO:0010008;endosome membrane;0.000378637828722697!GO:0032508;DNA duplex unwinding;0.000399611859586634!GO:0032392;DNA geometric change;0.000399611859586634!GO:0016310;phosphorylation;0.000411257143682224!GO:0016563;transcription activator activity;0.000413287877944413!GO:0048037;cofactor binding;0.000439426757986047!GO:0016125;sterol metabolic process;0.000442405343446759!GO:0051427;hormone receptor binding;0.000456097752263611!GO:0007010;cytoskeleton organization and biogenesis;0.00046944429137819!GO:0005048;signal sequence binding;0.000495071059264591!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00050699914146477!GO:0003678;DNA helicase activity;0.000545258856489747!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000581827899649598!GO:0008033;tRNA processing;0.000586455648321618!GO:0007093;mitotic cell cycle checkpoint;0.000621136669432029!GO:0007052;mitotic spindle organization and biogenesis;0.000650243557421076!GO:0000049;tRNA binding;0.00065216487738871!GO:0006916;anti-apoptosis;0.000663962816289773!GO:0016126;sterol biosynthetic process;0.000693448188429466!GO:0008139;nuclear localization sequence binding;0.000711775851903138!GO:0045454;cell redox homeostasis;0.000732236728921015!GO:0048471;perinuclear region of cytoplasm;0.000760579332300325!GO:0030036;actin cytoskeleton organization and biogenesis;0.000765435720504838!GO:0031072;heat shock protein binding;0.000766675960281721!GO:0043681;protein import into mitochondrion;0.000771502377804118!GO:0035257;nuclear hormone receptor binding;0.000846627257504518!GO:0006268;DNA unwinding during replication;0.000847282555156733!GO:0000725;recombinational repair;0.000853331386556961!GO:0000724;double-strand break repair via homologous recombination;0.000853331386556961!GO:0051789;response to protein stimulus;0.000889172346789435!GO:0006986;response to unfolded protein;0.000889172346789435!GO:0006310;DNA recombination;0.000907049063791918!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000929144598370651!GO:0008092;cytoskeletal protein binding;0.000961227778591497!GO:0007059;chromosome segregation;0.00101340517296056!GO:0031982;vesicle;0.00103078716111531!GO:0031988;membrane-bound vesicle;0.00103078716111531!GO:0006284;base-excision repair;0.00105264505135122!GO:0016197;endosome transport;0.00109456191674973!GO:0008652;amino acid biosynthetic process;0.00121322851409345!GO:0000792;heterochromatin;0.00127422608496666!GO:0006355;regulation of transcription, DNA-dependent;0.00130338164354845!GO:0000059;protein import into nucleus, docking;0.00131286077390036!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00131843485177311!GO:0033116;ER-Golgi intermediate compartment membrane;0.00139911078062861!GO:0016272;prefoldin complex;0.00145044144010407!GO:0019843;rRNA binding;0.00145596222004873!GO:0006612;protein targeting to membrane;0.00148182923438117!GO:0006695;cholesterol biosynthetic process;0.00149183117372078!GO:0040029;regulation of gene expression, epigenetic;0.0014997920028681!GO:0031252;leading edge;0.00151360155737555!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00152395735712847!GO:0016491;oxidoreductase activity;0.00154051208012005!GO:0051920;peroxiredoxin activity;0.00156542560193765!GO:0050662;coenzyme binding;0.00171523925246938!GO:0030867;rough endoplasmic reticulum membrane;0.00172905483722608!GO:0006270;DNA replication initiation;0.00187751915798257!GO:0016023;cytoplasmic membrane-bound vesicle;0.00192954707373258!GO:0006950;response to stress;0.00194968410354092!GO:0006595;polyamine metabolic process;0.00200481997504041!GO:0003684;damaged DNA binding;0.00210020293356976!GO:0008654;phospholipid biosynthetic process;0.00216405789163893!GO:0007006;mitochondrial membrane organization and biogenesis;0.00216507613023762!GO:0003713;transcription coactivator activity;0.00242024263966689!GO:0022890;inorganic cation transmembrane transporter activity;0.00247113115162941!GO:0051287;NAD binding;0.00248239709804598!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00253133887823773!GO:0005684;U2-dependent spliceosome;0.00253626032975856!GO:0031410;cytoplasmic vesicle;0.0025599066727364!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00265276881982204!GO:0008203;cholesterol metabolic process;0.00268490651784953!GO:0008250;oligosaccharyl transferase complex;0.00271104691841755!GO:0016044;membrane organization and biogenesis;0.00272281550738036!GO:0030029;actin filament-based process;0.00273081819193829!GO:0016481;negative regulation of transcription;0.00276044941629731!GO:0065009;regulation of a molecular function;0.00302754893174803!GO:0005770;late endosome;0.00311817216736536!GO:0004527;exonuclease activity;0.00321587645040496!GO:0006414;translational elongation;0.00331355772780956!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00342574399445611!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00343375342689165!GO:0003746;translation elongation factor activity;0.00356788667189884!GO:0005874;microtubule;0.00358077139254374!GO:0004576;oligosaccharyl transferase activity;0.00373326563481412!GO:0044431;Golgi apparatus part;0.00382009602807163!GO:0051087;chaperone binding;0.0040644039659811!GO:0000922;spindle pole;0.00408394541280914!GO:0006611;protein export from nucleus;0.00425410994628036!GO:0044262;cellular carbohydrate metabolic process;0.0043168931770838!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00452076337503354!GO:0015399;primary active transmembrane transporter activity;0.00452076337503354!GO:0042393;histone binding;0.00498039308837506!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00520123687804836!GO:0008286;insulin receptor signaling pathway;0.00532365360457452!GO:0005798;Golgi-associated vesicle;0.00532365360457452!GO:0001889;liver development;0.00535456143419202!GO:0032259;methylation;0.00554693899712253!GO:0008234;cysteine-type peptidase activity;0.00560081131849714!GO:0048500;signal recognition particle;0.00563156339944751!GO:0030134;ER to Golgi transport vesicle;0.00569745218661505!GO:0009303;rRNA transcription;0.00587694228435919!GO:0046483;heterocycle metabolic process;0.00594732709548203!GO:0051252;regulation of RNA metabolic process;0.00603913642241269!GO:0004518;nuclease activity;0.00606978983267093!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00627520635182811!GO:0000082;G1/S transition of mitotic cell cycle;0.00628543183810092!GO:0007088;regulation of mitosis;0.00631295059499041!GO:0019783;small conjugating protein-specific protease activity;0.00673720838462293!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00685854422190998!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00685854422190998!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00685854422190998!GO:0006406;mRNA export from nucleus;0.00703460462523797!GO:0006818;hydrogen transport;0.0070603857045229!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00707358362193263!GO:0006275;regulation of DNA replication;0.00710520922529855!GO:0004843;ubiquitin-specific protease activity;0.00734966321821033!GO:0006376;mRNA splice site selection;0.00736961804036137!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00736961804036137!GO:0043414;biopolymer methylation;0.00744708089136191!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00770464126040848!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00770464126040848!GO:0007017;microtubule-based process;0.00774109880468321!GO:0009165;nucleotide biosynthetic process;0.00786534045696832!GO:0042770;DNA damage response, signal transduction;0.00787537211794133!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00821770945851038!GO:0006352;transcription initiation;0.00827573264144775!GO:0015992;proton transport;0.00855839354621297!GO:0031570;DNA integrity checkpoint;0.00857515610776564!GO:0030127;COPII vesicle coat;0.00882801138708323!GO:0012507;ER to Golgi transport vesicle membrane;0.00882801138708323!GO:0031647;regulation of protein stability;0.00884040511387671!GO:0018196;peptidyl-asparagine modification;0.00889122091523564!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00889122091523564!GO:0003711;transcription elongation regulator activity;0.00890496504893224!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0089538503175368!GO:0051053;negative regulation of DNA metabolic process;0.00918818816226784!GO:0005791;rough endoplasmic reticulum;0.00924996166815148!GO:0008610;lipid biosynthetic process;0.00945742163171738!GO:0005876;spindle microtubule;0.00953200878448772!GO:0009081;branched chain family amino acid metabolic process;0.00986341435406233!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0100573409773069!GO:0015002;heme-copper terminal oxidase activity;0.0100573409773069!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0100573409773069!GO:0004129;cytochrome-c oxidase activity;0.0100573409773069!GO:0046982;protein heterodimerization activity;0.010140781765238!GO:0006626;protein targeting to mitochondrion;0.0103118687808496!GO:0006091;generation of precursor metabolites and energy;0.0103694167014909!GO:0004674;protein serine/threonine kinase activity;0.0104073017224432!GO:0006891;intra-Golgi vesicle-mediated transport;0.0105022898270137!GO:0005732;small nucleolar ribonucleoprotein complex;0.0106945370809698!GO:0008276;protein methyltransferase activity;0.0110816976068903!GO:0016835;carbon-oxygen lyase activity;0.0112515179047191!GO:0004221;ubiquitin thiolesterase activity;0.0116433816121073!GO:0033673;negative regulation of kinase activity;0.0121539403857642!GO:0006469;negative regulation of protein kinase activity;0.0121539403857642!GO:0006979;response to oxidative stress;0.0121539403857642!GO:0003702;RNA polymerase II transcription factor activity;0.0126653823218858!GO:0051098;regulation of binding;0.0127664753510057!GO:0016836;hydro-lyase activity;0.0128619159808159!GO:0006354;RNA elongation;0.0129988050956937!GO:0030145;manganese ion binding;0.0131382182708147!GO:0006607;NLS-bearing substrate import into nucleus;0.0131442928620948!GO:0015631;tubulin binding;0.0131848923425867!GO:0048487;beta-tubulin binding;0.0136154454075279!GO:0051348;negative regulation of transferase activity;0.0141181492218593!GO:0051101;regulation of DNA binding;0.0144730890608101!GO:0016829;lyase activity;0.0145353498111206!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0149253480127597!GO:0000096;sulfur amino acid metabolic process;0.0150759854926671!GO:0008312;7S RNA binding;0.0151530974840578!GO:0043492;ATPase activity, coupled to movement of substances;0.0154043694237319!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0154481489080658!GO:0030880;RNA polymerase complex;0.0160019806127716!GO:0006596;polyamine biosynthetic process;0.0160601688838656!GO:0005885;Arp2/3 protein complex;0.0160601688838656!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0160860638967151!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0161705832957121!GO:0055083;monovalent inorganic anion homeostasis;0.0161705832957121!GO:0055064;chloride ion homeostasis;0.0161705832957121!GO:0030644;cellular chloride ion homeostasis;0.0161705832957121!GO:0030133;transport vesicle;0.016300411756836!GO:0005839;proteasome core complex (sensu Eukaryota);0.0165977289700768!GO:0015980;energy derivation by oxidation of organic compounds;0.0168395168200175!GO:0042176;regulation of protein catabolic process;0.0173161138317538!GO:0031901;early endosome membrane;0.0175029736309165!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0178232667537173!GO:0030027;lamellipodium;0.0179202848334691!GO:0000086;G2/M transition of mitotic cell cycle;0.0182275345333326!GO:0043407;negative regulation of MAP kinase activity;0.0182297555447465!GO:0016790;thiolester hydrolase activity;0.0182549742715962!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.01861407069391!GO:0045047;protein targeting to ER;0.01861407069391!GO:0043488;regulation of mRNA stability;0.0191884897750229!GO:0043487;regulation of RNA stability;0.0191884897750229!GO:0043022;ribosome binding;0.0193108694415074!GO:0005669;transcription factor TFIID complex;0.0197426832128388!GO:0046426;negative regulation of JAK-STAT cascade;0.0200306048723708!GO:0006839;mitochondrial transport;0.0201811742905694!GO:0019867;outer membrane;0.0204968519143784!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0208193122499624!GO:0000790;nuclear chromatin;0.0212076190914606!GO:0005637;nuclear inner membrane;0.021395673264888!GO:0044255;cellular lipid metabolic process;0.021395673264888!GO:0043596;nuclear replication fork;0.0215797047994644!GO:0000209;protein polyubiquitination;0.0216226363475193!GO:0031968;organelle outer membrane;0.0217166423930261!GO:0006301;postreplication repair;0.0221679089065946!GO:0008629;induction of apoptosis by intracellular signals;0.0224578734917834!GO:0008097;5S rRNA binding;0.0228957324233681!GO:0005832;chaperonin-containing T-complex;0.0241346213349696!GO:0043189;H4/H2A histone acetyltransferase complex;0.0244060161286139!GO:0035267;NuA4 histone acetyltransferase complex;0.0248480267572858!GO:0009066;aspartate family amino acid metabolic process;0.0250365257422263!GO:0043433;negative regulation of transcription factor activity;0.025439841855296!GO:0000139;Golgi membrane;0.0254748700891989!GO:0008156;negative regulation of DNA replication;0.0258046011263705!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0258907700336044!GO:0030139;endocytic vesicle;0.026420861734005!GO:0001832;blastocyst growth;0.0269421476307685!GO:0031625;ubiquitin protein ligase binding;0.0275534679409901!GO:0006541;glutamine metabolic process;0.0278021751638364!GO:0016584;nucleosome positioning;0.0280438351927034!GO:0030658;transport vesicle membrane;0.028050838484961!GO:0005741;mitochondrial outer membrane;0.0282364301790297!GO:0003756;protein disulfide isomerase activity;0.0282386478409181!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0282386478409181!GO:0043624;cellular protein complex disassembly;0.0282543629652159!GO:0004298;threonine endopeptidase activity;0.0289612225175928!GO:0016791;phosphoric monoester hydrolase activity;0.029248990213147!GO:0004003;ATP-dependent DNA helicase activity;0.0302854400247058!GO:0005773;vacuole;0.0308489830272153!GO:0000228;nuclear chromosome;0.0308489830272153!GO:0030659;cytoplasmic vesicle membrane;0.0312932429487583!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0312932429487583!GO:0012506;vesicle membrane;0.0314267057959298!GO:0007050;cell cycle arrest;0.0314425241960534!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0314425241960534!GO:0000428;DNA-directed RNA polymerase complex;0.0314425241960534!GO:0045941;positive regulation of transcription;0.0318629244918345!GO:0001824;blastocyst development;0.0331456011170965!GO:0032200;telomere organization and biogenesis;0.0332595462364445!GO:0000723;telomere maintenance;0.0332595462364445!GO:0006749;glutathione metabolic process;0.0332793485622323!GO:0051716;cellular response to stimulus;0.0350453243680515!GO:0047485;protein N-terminus binding;0.0352258249972494!GO:0035258;steroid hormone receptor binding;0.0361963335660129!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0362316294085573!GO:0005905;coated pit;0.0362589293471368!GO:0051297;centrosome organization and biogenesis;0.0362589293471368!GO:0031023;microtubule organizing center organization and biogenesis;0.0362589293471368!GO:0000077;DNA damage checkpoint;0.0367134595211338!GO:0006066;alcohol metabolic process;0.0367134595211338!GO:0006007;glucose catabolic process;0.0369008855231092!GO:0000339;RNA cap binding;0.0369359937054863!GO:0030132;clathrin coat of coated pit;0.0371134414585403!GO:0009451;RNA modification;0.0371134414585403!GO:0008632;apoptotic program;0.0372884757753587!GO:0006892;post-Golgi vesicle-mediated transport;0.0379005095249205!GO:0007030;Golgi organization and biogenesis;0.0379666736948817!GO:0051100;negative regulation of binding;0.0379725006115704!GO:0045947;negative regulation of translational initiation;0.0388159902749998!GO:0050748;negative regulation of lipoprotein metabolic process;0.0398158100173102!GO:0000123;histone acetyltransferase complex;0.0399983438248223!GO:0043284;biopolymer biosynthetic process;0.0406739953266438!GO:0006650;glycerophospholipid metabolic process;0.0412139129072247!GO:0042769;DNA damage response, detection of DNA damage;0.0416367243742337!GO:0006642;triacylglycerol mobilization;0.0416797548652239!GO:0031124;mRNA 3'-end processing;0.0417622997705822!GO:0005758;mitochondrial intermembrane space;0.0417684777123007!GO:0016311;dephosphorylation;0.0428303055685326!GO:0005862;muscle thin filament tropomyosin;0.0430812169095485!GO:0004239;methionyl aminopeptidase activity;0.0438114040782861!GO:0005938;cell cortex;0.0438774915264939!GO:0006400;tRNA modification;0.0443297863743119!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0447222036887357!GO:0004448;isocitrate dehydrogenase activity;0.0450188729781665!GO:0046474;glycerophospholipid biosynthetic process;0.0454746361620865!GO:0000726;non-recombinational repair;0.045724445771398!GO:0006144;purine base metabolic process;0.046214739620365!GO:0045815;positive regulation of gene expression, epigenetic;0.0465731009812537!GO:0045892;negative regulation of transcription, DNA-dependent;0.046600510058704!GO:0005844;polysome;0.0467554701948489!GO:0005856;cytoskeleton;0.0467554701948489!GO:0005784;translocon complex;0.0470037871315293!GO:0030262;apoptotic nuclear changes;0.0471087821333737!GO:0050749;apolipoprotein E receptor binding;0.0472855797383346!GO:0030663;COPI coated vesicle membrane;0.0474030241078297!GO:0030126;COPI vesicle coat;0.0474030241078297!GO:0022411;cellular component disassembly;0.0475157925253064!GO:0030496;midbody;0.0480608304876618!GO:0031057;negative regulation of histone modification;0.0481019474337518!GO:0035067;negative regulation of histone acetylation;0.0481019474337518!GO:0007346;regulation of progression through mitotic cell cycle;0.0486604629588943!GO:0006417;regulation of translation;0.0493315608089352!GO:0000910;cytokinesis;0.049472161453907
 +
|sample_id=10633
 +
|sample_note=
 +
|sample_sex=male
 +
|sample_species=Human (Homo sapiens)
 +
|sample_strain=
 +
|sample_tissue=liver
 +
|top_motifs=HNF4A_NR2F1,2:3.02107122772;LEF1_TCF7_TCF7L1,2:2.83966977704;HNF1A:2.61068626893;FOXA2:2.56196584453;FOX{F1,F2,J1}:2.36378658859;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.12098186747;bHLH_family:1.94280388571;SOX{8,9,10}:1.63588078037;POU6F1:1.52674388803;NFY{A,B,C}:1.52456764333;ONECUT1,2:1.51598541077;SNAI1..3:1.51440104956;TFDP1:1.29529672604;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.22397867388;GFI1:1.16355898817;GATA6:1.15765198934;HOX{A6,A7,B6,B7}:1.13880578858;PBX1:1.12782039612;E2F1..5:1.08083334157;ZEB1:1.06296536477;RBPJ:1.04937515738;DBP:1.00666122716;SOX17:0.999082014346;T:0.986608911661;PDX1:0.980044745148;FOX{D1,D2}:0.975172051829;CDC5L:0.955998411031;MYOD1:0.934556065755;STAT5{A,B}:0.928193124987;TBP:0.924999429816;VSX1,2:0.891477534347;PPARG:0.846574681019;NR5A1,2:0.819473000319;POU3F1..4:0.809058380874;POU2F1..3:0.678330847875;FOXP1:0.672621664978;MYB:0.661412354131;ZBTB16:0.658935370661;PITX1..3:0.646835695974;MTF1:0.639146507793;ZFP161:0.635231883248;NKX2-1,4:0.605290299059;TOPORS:0.593873176671;SOX2:0.585479905773;MED-1{core}:0.560168042624;FOXM1:0.555151646293;HOXA9_MEIS1:0.508862337586;NR3C1:0.487371653499;OCT4_SOX2{dimer}:0.457804371711;ZNF143:0.453713044638;RORA:0.450457819876;FOX{I1,J2}:0.437987380431;CUX2:0.431121519894;TFAP2{A,C}:0.426641279293;TFAP2B:0.405704420831;NRF1:0.404503331821;PAX2:0.387354541779;BREu{core}:0.387224184278;TEAD1:0.371968278635;SP1:0.370090540938;PATZ1:0.330563953599;IKZF2:0.323537618333;ATF4:0.317731346707;MTE{core}:0.275125067208;FOXD3:0.242711063887;ATF6:0.220738860033;FOXO1,3,4:0.212108899175;ELK1,4_GABP{A,B1}:0.200645471266;ADNP_IRX_SIX_ZHX:0.194181753727;SOX5:0.188183352252;SREBF1,2:0.162272990189;FOXN1:0.128317478866;CEBPA,B_DDIT3:0.124984370502;HOX{A5,B5}:0.112613825356;FOXQ1:0.0855074737912;ATF2:0.0654206580643;LMO2:0.0553817857162;MAZ:0.0498291089936;AHR_ARNT_ARNT2:0.0454655920726;NKX2-3_NKX2-5:0.0375513891153;YY1:0.0269493809298;TFAP4:0.0168742707328;GATA4:-0.00750783113043;EBF1:-0.0138961591463;NFE2:-0.0179620823017;PRRX1,2:-0.0248872479332;ATF5_CREB3:-0.0379786579824;BPTF:-0.0593651115729;HLF:-0.0742419240488;LHX3,4:-0.087337601329;FOSL2:-0.110024004177;NFIX:-0.110500445706;HIC1:-0.117432482461;MEF2{A,B,C,D}:-0.135645423677;EVI1:-0.138997382051;NHLH1,2:-0.153272144485;NR6A1:-0.154831129397;PAX1,9:-0.167595431132;ESRRA:-0.177431517305;NFKB1_REL_RELA:-0.215312596233;AIRE:-0.223075394012;AR:-0.229607159664;POU1F1:-0.248494621756;FOS_FOS{B,L1}_JUN{B,D}:-0.285153423018;NFIL3:-0.301838997067;RFX1:-0.304116407903;XCPE1{core}:-0.314216556223;REST:-0.322484999876;GTF2I:-0.332823855062;NFE2L2:-0.346607446705;TFCP2:-0.346945540151;EGR1..3:-0.361240097503;NANOG:-0.396296568457;MAFB:-0.40007687573;PAX6:-0.40262566695;HOX{A4,D4}:-0.40353254158;HAND1,2:-0.407273162749;BACH2:-0.41645385902;CREB1:-0.420659166884;ESR1:-0.422672407866;MYFfamily:-0.433443529994;ALX1:-0.447718617167;DMAP1_NCOR{1,2}_SMARC:-0.464883738765;PAX8:-0.466891222244;GFI1B:-0.478121245189;RUNX1..3:-0.483677295841;KLF4:-0.485366233188;NANOG{mouse}:-0.486146298313;XBP1:-0.509812839853;PAX3,7:-0.516840390657;HBP1_HMGB_SSRP1_UBTF:-0.523089955341;HES1:-0.540172246496;STAT2,4,6:-0.542924169302;MZF1:-0.543909054042;POU5F1:-0.552013682148;MYBL2:-0.570376558554;CDX1,2,4:-0.574884600108;SRF:-0.592613633526;GTF2A1,2:-0.600086915098;RFX2..5_RFXANK_RFXAP:-0.626491814068;TLX1..3_NFIC{dimer}:-0.634449146013;EN1,2:-0.647894457888;RXRA_VDR{dimer}:-0.667425164563;RREB1:-0.687071544326;GZF1:-0.723805050243;SPIB:-0.738403908034;JUN:-0.7602958171;SPI1:-0.767350957814;TLX2:-0.773069773364;IRF7:-0.788880514059;TP53:-0.791906194606;ZNF384:-0.808307034357;PRDM1:-0.842938243988;FOXL1:-0.848571463883;NR1H4:-0.876176497824;ZNF148:-0.921108992033;UFEwm:-0.924600347331;ETS1,2:-0.934655203357;NKX3-2:-0.965162917596;GCM1,2:-0.969788188773;ALX4:-0.981473857822;HSF1,2:-1.01246172848;FOXP3:-1.0402341818;TGIF1:-1.06464778692;ZBTB6:-1.10156958674;GLI1..3:-1.11681542314;ELF1,2,4:-1.13679698831;STAT1,3:-1.14293349812;TEF:-1.169988987;NKX2-2,8:-1.17983052358;CRX:-1.20311175381;PAX4:-1.20983080526;TAL1_TCF{3,4,12}:-1.21726600927;IKZF1:-1.25982500477;ZIC1..3:-1.27885415852;NFATC1..3:-1.32241917907;TBX4,5:-1.32720723731;NKX3-1:-1.42923594321;EP300:-1.46487171141;IRF1,2:-1.49286256578;SMAD1..7,9:-1.50514348328;ARID5B:-1.53011471897;NKX6-1,2:-1.55029315705;HIF1A:-1.56765889592;SPZ1:-1.5696463925;HMGA1,2:-1.62047761757;ZNF238:-1.62507066206;RXR{A,B,G}:-1.62625427009;ZNF423:-1.67937913013;PAX5:-1.69525333322;HMX1:-1.8456493618;NFE2L1:-2.05987636199
 +
|xref=
 
}}
 
}}

Latest revision as of 10:35, 10 August 2017

Name:hepatoblastoma cell line:HuH-6
Species:Human (Homo sapiens)
Library ID:CNhs11742
Sample type:cell lines
Genomic View: UCSC
MicroRNAs:Including candidate novel miRNAs(CAGE samples)
Excluding candidate novel miRNAs(CAGE samples)
RefEX:Specific genes
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueliver
dev stageNA
sexmale
age1
cell typehepatoblast
cell lineHuH-6
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

Accession numbers
MethodSample accession id
CAGE  SAMD00005793
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11742 CAGE DRX007904 DRR008776
Accession ID Hg19

Library idBAMCTSS
CNhs11742 DRZ000201 DRZ001586
Accession ID Hg38

Library idBAMCTSS
CNhs11742 DRZ011551 DRZ012936
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis--0.014
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.481
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.117
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle--0.0225
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed--0.0568
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte--0.07
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.434
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric1.208
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth--0.0663
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.44
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11742

Jaspar motif P-value
MA0002.2 0.14
MA0003.1 0.465
MA0004.1 6.025e-4
MA0006.1 0.625
MA0007.1 0.382
MA0009.1 0.217
MA0014.1 0.711
MA0017.1 7.10981e-9
MA0018.2 0.754
MA0019.1 0.653
MA0024.1 1.09478e-7
MA0025.1 0.0557
MA0027.1 0.719
MA0028.1 0.564
MA0029.1 0.0226
MA0030.1 0.0229
MA0031.1 0.00521
MA0035.2 0.017
MA0038.1 0.00796
MA0039.2 0.137
MA0040.1 0.568
MA0041.1 0.46
MA0042.1 0.833
MA0043.1 0.0923
MA0046.1 1.71966e-31
MA0047.2 1.35326e-4
MA0048.1 0.695
MA0050.1 9.6665e-9
MA0051.1 3.60972e-6
MA0052.1 0.922
MA0055.1 0.0504
MA0057.1 0.634
MA0058.1 1.95092e-4
MA0059.1 0.0359
MA0060.1 1.06801e-19
MA0061.1 2.58514e-4
MA0062.2 0.452
MA0065.2 6.38715e-4
MA0066.1 0.404
MA0067.1 0.411
MA0068.1 0.0599
MA0069.1 0.64
MA0070.1 0.353
MA0071.1 0.0621
MA0072.1 0.133
MA0073.1 0.296
MA0074.1 0.523
MA0076.1 0.526
MA0077.1 0.0144
MA0078.1 0.775
MA0079.2 0.131
MA0080.2 2.02518e-10
MA0081.1 7.05312e-4
MA0083.1 0.687
MA0084.1 0.454
MA0087.1 0.755
MA0088.1 0.801
MA0090.1 0.0691
MA0091.1 0.123
MA0092.1 0.0494
MA0093.1 3.49915e-4
MA0099.2 0.00225
MA0100.1 0.133
MA0101.1 0.131
MA0102.2 0.755
MA0103.1 9.03384e-5
MA0104.2 0.00839
MA0105.1 2.07702e-6
MA0106.1 0.825
MA0107.1 0.0105
MA0108.2 9.32892e-7
MA0111.1 0.283
MA0112.2 0.0458
MA0113.1 0.247
MA0114.1 5.88146e-13
MA0115.1 4.77989e-4
MA0116.1 0.0017
MA0117.1 0.682
MA0119.1 0.269
MA0122.1 0.621
MA0124.1 0.156
MA0125.1 0.459
MA0131.1 0.617
MA0135.1 0.556
MA0136.1 2.40618e-7
MA0137.2 0.024
MA0138.2 0.344
MA0139.1 0.465
MA0140.1 0.0265
MA0141.1 0.102
MA0142.1 0.0341
MA0143.1 0.615
MA0144.1 0.0262
MA0145.1 0.439
MA0146.1 0.755
MA0147.1 0.00588
MA0148.1 8.42325e-4
MA0149.1 0.887
MA0150.1 0.235
MA0152.1 0.986
MA0153.1 5.73308e-24
MA0154.1 6.65914e-4
MA0155.1 0.636
MA0156.1 3.38082e-6
MA0157.1 0.119
MA0159.1 0.898
MA0160.1 0.0173
MA0162.1 0.363
MA0163.1 4.18301e-4
MA0164.1 0.0146
MA0258.1 0.38
MA0259.1 0.22



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11742

Novel motif P-value
1 0.86
10 0.00628
100 0.993
101 0.889
102 0.902
103 0.343
104 0.875
105 0.908
106 0.0012
107 0.142
108 0.713
109 0.12
11 0.266
110 0.288
111 0.108
112 0.0809
113 0.21
114 0.0991
115 0.0162
116 0.211
117 0.195
118 0.7
119 0.164
12 0.394
120 0.453
121 0.187
122 0.283
123 0.412
124 0.602
125 0.154
126 0.308
127 0.425
128 0.0782
129 0.408
13 0.148
130 0.665
131 0.163
132 0.345
133 0.148
134 0.0637
135 0.0471
136 0.379
137 0.0524
138 0.156
139 0.286
14 0.697
140 0.353
141 0.0206
142 0.847
143 0.0132
144 0.495
145 0.262
146 0.671
147 0.423
148 0.0455
149 0.368
15 0.651
150 0.411
151 0.657
152 0.0819
153 0.149
154 0.24
155 0.301
156 0.708
157 0.681
158 0.549
159 0.649
16 0.294
160 0.883
161 0.71
162 0.402
163 0.966
164 0.0487
165 0.627
166 0.341
167 0.746
168 0.757
169 0.428
17 0.429
18 0.0912
19 0.348
2 0.166
20 0.973
21 0.288
22 0.807
23 0.0869
24 0.529
25 0.591
26 0.508
27 0.209
28 0.465
29 0.87
3 0.0807
30 0.981
31 0.779
32 0.00149
33 0.276
34 0.746
35 0.718
36 0.177
37 0.0176
38 0.807
39 0.357
4 0.345
40 0.697
41 0.293
42 0.704
43 0.111
44 0.559
45 0.518
46 0.59
47 0.871
48 0.613
49 0.707
5 0.804
50 0.696
51 0.715
52 0.692
53 0.627
54 0.756
55 0.387
56 0.675
57 0.774
58 0.862
59 0.0287
6 0.88
60 0.526
61 0.252
62 0.342
63 0.423
64 0.517
65 0.133
66 0.0101
67 0.818
68 0.00407
69 0.0993
7 0.163
70 5.14154e-4
71 0.00349
72 0.0749
73 0.116
74 0.674
75 0.632
76 0.262
77 0.125
78 0.0515
79 0.00988
8 0.351
80 0.381
81 0.268
82 0.0212
83 0.529
84 0.423
85 6.92955e-4
86 0.107
87 0.658
88 0.467
89 0.374
9 0.0947
90 0.999
91 0.351
92 0.0707
93 0.428
94 0.262
95 0.0297
96 0.826
97 0.646
98 0.849
99 0.863



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs11742


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000181 (metabolising cell)
0000417 (endopolyploid cell)
0000668 (parenchymal cell)
0000412 (polyploid cell)
0000255 (eukaryotic cell)
0000182 (hepatocyte)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100224 (liver cell line sample)
0100578 (hepatoma cell line sample)
0101664 (hepatoblastoma cell line sample)
0101670 (HuH-6 cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

CL:0000134 (mesenchymal cell)
CL:0000223 (endodermal cell)
UBERON:0001041 (foregut)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0004161 (septum transversum)
UBERON:0009497 (epithelium of foregut-midgut junction)
UBERON:0010316 (germ layer / neural crest)