FF:10638-108I8: Difference between revisions

Latest revision as of 14:32, 3 June 2020

Name:	clear cell carcinoma cell line:JHOC-5
Species:	Human (Homo sapiens)
Library ID:	CNhs11745
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	ovary
dev stage	NA
sex	female
age	54
cell type	unclassifiable
cell line	JHOC-5
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005922

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11745		CAGE		DRX007860		DRR008732

Accession ID Hg19

Library id		BAM		CTSS
CNhs11745		DRZ000157		DRZ001542

Accession ID Hg38

Library id		BAM		CTSS
CNhs11745		DRZ011507		DRZ012892

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.18
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.436
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.101
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.286
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.108
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.223
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0831
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.547
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.355
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0831
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0.0831
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.519
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0831
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.266
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.0831
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11745

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.154
MA0003.1	MA0003.1	0.252
MA0004.1	MA0004.1	0.64
MA0006.1	MA0006.1	0.957
MA0007.1	MA0007.1	0.465
MA0009.1	MA0009.1	0.847
MA0014.1	MA0014.1	0.0984
MA0017.1	MA0017.1	0.502
MA0018.2	MA0018.2	0.00341
MA0019.1	MA0019.1	0.326
MA0024.1	MA0024.1	8.26515e-4
MA0025.1	MA0025.1	0.582
MA0027.1	MA0027.1	0.929
MA0028.1	MA0028.1	0.0501
MA0029.1	MA0029.1	0.84
MA0030.1	MA0030.1	0.0468
MA0031.1	MA0031.1	0.0436
MA0035.2	MA0035.2	0.661
MA0038.1	MA0038.1	0.687
MA0039.2	MA0039.2	0.444
MA0040.1	MA0040.1	0.0879
MA0041.1	MA0041.1	0.0871
MA0042.1	MA0042.1	0.101
MA0043.1	MA0043.1	0.101
MA0046.1	MA0046.1	2.11548e-7
MA0047.2	MA0047.2	0.19
MA0048.1	MA0048.1	0.0753
MA0050.1	MA0050.1	0.295
MA0051.1	MA0051.1	0.677
MA0052.1	MA0052.1	1.82554e-4
MA0055.1	MA0055.1	9.56737e-4
MA0057.1	MA0057.1	0.484
MA0058.1	MA0058.1	0.455
MA0059.1	MA0059.1	0.286
MA0060.1	MA0060.1	0.271
MA0061.1	MA0061.1	0.00281
MA0062.2	MA0062.2	0.759
MA0065.2	MA0065.2	0.0605
MA0066.1	MA0066.1	0.43
MA0067.1	MA0067.1	0.11
MA0068.1	MA0068.1	0.00748
MA0069.1	MA0069.1	0.644
MA0070.1	MA0070.1	0.85
MA0071.1	MA0071.1	0.187
MA0072.1	MA0072.1	0.88
MA0073.1	MA0073.1	0.784
MA0074.1	MA0074.1	0.458
MA0076.1	MA0076.1	0.321
MA0077.1	MA0077.1	0.298
MA0078.1	MA0078.1	0.299
MA0079.2	MA0079.2	0.243
MA0080.2	MA0080.2	2.40051e-7
MA0081.1	MA0081.1	0.0386
MA0083.1	MA0083.1	3.40321e-4
MA0084.1	MA0084.1	0.572
MA0087.1	MA0087.1	0.337
MA0088.1	MA0088.1	0.0147
MA0090.1	MA0090.1	0.253
MA0091.1	MA0091.1	0.137
MA0092.1	MA0092.1	0.271
MA0093.1	MA0093.1	0.613
MA0099.2	MA0099.2	0.843
MA0100.1	MA0100.1	0.198
MA0101.1	MA0101.1	0.00949
MA0102.2	MA0102.2	0.0887
MA0103.1	MA0103.1	4.81465e-6
MA0104.2	MA0104.2	0.209
MA0105.1	MA0105.1	2.47323e-4
MA0106.1	MA0106.1	0.0356
MA0107.1	MA0107.1	0.0268
MA0108.2	MA0108.2	4.85898e-9
MA0111.1	MA0111.1	0.333
MA0112.2	MA0112.2	0.251
MA0113.1	MA0113.1	0.15
MA0114.1	MA0114.1	0.191
MA0115.1	MA0115.1	0.408
MA0116.1	MA0116.1	0.00857
MA0117.1	MA0117.1	0.315
MA0119.1	MA0119.1	0.653
MA0122.1	MA0122.1	0.728
MA0124.1	MA0124.1	0.171
MA0125.1	MA0125.1	0.583
MA0131.1	MA0131.1	0.532
MA0135.1	MA0135.1	0.0739
MA0136.1	MA0136.1	1.54968e-6
MA0137.2	MA0137.2	0.226
MA0138.2	MA0138.2	0.0385
MA0139.1	MA0139.1	0.00149
MA0140.1	MA0140.1	0.289
MA0141.1	MA0141.1	0.195
MA0142.1	MA0142.1	0.716
MA0143.1	MA0143.1	0.322
MA0144.1	MA0144.1	0.395
MA0145.1	MA0145.1	0.738
MA0146.1	MA0146.1	0.605
MA0147.1	MA0147.1	0.104
MA0148.1	MA0148.1	0.944
MA0149.1	MA0149.1	0.011
MA0150.1	MA0150.1	0.966
MA0152.1	MA0152.1	0.626
MA0153.1	MA0153.1	5.40342e-12
MA0154.1	MA0154.1	0.343
MA0155.1	MA0155.1	0.801
MA0156.1	MA0156.1	7.77035e-4
MA0157.1	MA0157.1	0.0202
MA0159.1	MA0159.1	0.0925
MA0160.1	MA0160.1	0.603
MA0162.1	MA0162.1	0.182
MA0163.1	MA0163.1	0.0651
MA0164.1	MA0164.1	0.878
MA0258.1	MA0258.1	0.382
MA0259.1	MA0259.1	0.325

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11745

Novel motif	Logo	P-value
1	1	0.0898
10	10	0.111
100	100	0.00105
101	101	0.178
102	102	0.638
103	103	0.411
104	104	0.962
105	105	0.143
106	106	0.701
107	107	0.276
108	108	0.534
109	109	0.0551
11	11	0.163
110	110	0.0531
111	111	0.15
112	112	0.5
113	113	0.0218
114	114	0.84
115	115	0.336
116	116	0.39
117	117	0.154
118	118	0.0148
119	119	0.159
12	12	0.324
120	120	0.0979
121	121	0.54
122	122	0.263
123	123	0.557
124	124	0.286
125	125	0.272
126	126	0.4
127	127	0.77
128	128	0.766
129	129	0.272
13	13	8.78508e-4
130	130	0.806
131	131	0.931
132	132	0.852
133	133	0.113
134	134	0.104
135	135	0.0204
136	136	0.0104
137	137	0.349
138	138	0.777
139	139	0.0936
14	14	0.728
140	140	0.788
141	141	0.675
142	142	0.807
143	143	0.0422
144	144	0.925
145	145	0.5
146	146	0.236
147	147	0.94
148	148	0.569
149	149	0.711
15	15	0.306
150	150	0.603
151	151	0.8
152	152	0.327
153	153	0.775
154	154	0.404
155	155	0.924
156	156	0.971
157	157	0.426
158	158	0.178
159	159	0.188
16	16	0.308
160	160	0.159
161	161	0.58
162	162	0.69
163	163	0.876
164	164	0.0142
165	165	0.826
166	166	0.996
167	167	0.189
168	168	0.8
169	169	0.8
17	17	0.931
18	18	0.959
19	19	0.914
2	2	0.205
20	20	0.0313
21	21	0.108
22	22	0.307
23	23	0.878
24	24	0.446
25	25	0.983
26	26	0.0271
27	27	0.352
28	28	0.711
29	29	0.0269
3	3	0.503
30	30	0.882
31	31	0.46
32	32	0.337
33	33	0.0474
34	34	0.0928
35	35	0.907
36	36	0.123
37	37	0.12
38	38	0.696
39	39	0.509
4	4	0.996
40	40	0.0222
41	41	0.027
42	42	0.548
43	43	0.964
44	44	0.023
45	45	0.34
46	46	0.419
47	47	0.145
48	48	0.0763
49	49	0.424
5	5	0.731
50	50	0.628
51	51	0.868
52	52	0.437
53	53	0.315
54	54	0.741
55	55	0.697
56	56	0.757
57	57	0.354
58	58	0.683
59	59	0.722
6	6	0.339
60	60	0.674
61	61	0.627
62	62	0.732
63	63	0.461
64	64	0.526
65	65	0.975
66	66	0.515
67	67	0.906
68	68	0.98
69	69	0.518
7	7	0.63
70	70	0.275
71	71	0.169
72	72	0.264
73	73	0.863
74	74	0.559
75	75	0.0979
76	76	0.174
77	77	0.317
78	78	0.119
79	79	0.843
8	8	0.457
80	80	0.00174
81	81	0.714
82	82	0.445
83	83	0.904
84	84	0.902
85	85	0.372
86	86	0.587
87	87	0.0898
88	88	0.498
89	89	0.923
9	9	0.0955
90	90	0.208
91	91	0.177
92	92	0.993
93	93	0.38
94	94	0.286
95	95	0.229
96	96	0.769
97	97	0.787
98	98	0.511
99	99	0.362

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11745

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102787 clear cell adenocarcinoma cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
193 (reproductive organ cancer)
305 (carcinoma)
120 (female reproductive organ cancer)
299 (adenocarcinoma)
4468 (clear cell adenocarcinoma)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100167 (adenocarcinoma cell line sample)
0102787 (clear cell adenocarcinoma cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005922
+|accession_numbers=CAGE;DRX007860;DRR008732;DRZ000157;DRZ001542;DRZ011507;DRZ012892
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!2.42!262.27!PAX8;;chr17:36105042..36105060,-!p1@HNF1B!2.00!99.59!HNF1B;;chr12:66218255..66218304,+!p3@HMGA2!1.52!83.77!HMGA2;;chr8:55370487..55370503,+!p1@SOX17!1.50!30.81!SOX17;;chr1:201979743..201979762,+!p1@ELF3!1.50!30.38!ELF3;;chr12:66218183..66218209,+!p4@HMGA2!1.38!43.68!HMGA2;;chr12:66218152..66218174,+!p10@HMGA2!1.37!23.84!HMGA2;;chr20:31350184..31350200,+!p1@DNMT3B!1.29!37.77!DNMT3B;;chr12:66218378..66218401,+!p6@HMGA2!1.29!28.70!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.27!25.32!HMGA2;;chr1:201979703..201979721,+!p2@ELF3!1.26!17.09!ELF3;;chr2:113982635..113982648,-!p8@PAX8!1.25!16.67!PAX8;;chr17:53342311..53342400,+!p1@HLF!1.24!18.78!HLF;;chr12:66218003..66218018,+!p9@HMGA2!1.21!18.57!HMGA2;;chr7:57509877..57509895,+!p1@ZNF716!1.21!15.19!ZNF716;;chr6:10412600..10412637,-!p1@TFAP2A!1.20!24.48!TFAP2A;;chr12:19556960..19556982,+!p10@AEBP2!1.19!14.56!AEBP2;;chr12:66218573..66218596,+!p7@HMGA2!1.18!21.31!HMGA2;;chr12:66218598..66218645,+!p2@HMGA2!1.17!63.09!HMGA2;;chr12:66357214..66357233,+!p13@HMGA2!1.14!12.66!HMGA2;;chr3:111314186..111314204,-!p1@ZBED2!1.09!11.39!ZBED2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.09!11.39!ZBED1;;chr2:46524897..46524911,+!p2@EPAS1!1.08!30.81!EPAS1;;chr12:66218420..66218439,+!p12@HMGA2!1.08!10.97!HMGA2;;chr6:10415276..10415341,-!p2@TFAP2A!1.05!12.66!TFAP2A;;chr12:66358080..66358094,+!p15@HMGA2!1.03!9.71!HMGA2;;chr3:69811858..69811881,+!p5@MITF!1.02!9.49!MITF;;chr17:36104873..36104903,-!p3@HNF1B!0.99!8.86!HNF1B;;chr11:31832658..31832681,-!p1@PAX6!0.98!8.65!PAX6;;chr12:66218836..66218888,+!p1@HMGA2!0.97!80.39!HMGA2;;chr12:66218443..66218461,+!p8@HMGA2!0.96!10.55!HMGA2;;chr17:36105074..36105086,-!p2@HNF1B!0.96!8.02!HNF1B;;chr6:10412392..10412409,-!p4@TFAP2A!0.94!8.86!TFAP2A;;chr12:19556998..19557013,+!p6@AEBP2!0.91!7.17!AEBP2;;chr11:65667884..65667895,-!p2@FOSL1!0.90!27.85!FOSL1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.89!14.98!ZNF395;;chr9:100615499..100615519,+!p1@FOXE1!0.89!6.75!FOXE1;;chr3:32023232..32023273,+!p1@ZNF860!0.88!9.71!ZNF860;;chr19:45971246..45971265,+!p1@FOSB!0.85!120.48!FOSB;;chr7:28725740..28725778,+!p1@CREB5!0.85!58.24!CREB5;;chr7:27153454..27153469,-!p2@HOXA3!0.83!5.70!HOXA3;;chr7:27169801..27169844,-!p2@HOXA4!0.83!5.70!HOXA4;;chr17:46682321..46682362,-!p1@HOXB6!0.83!5.70!HOXB6;;chr12:77459306..77459365,-!p1@E2F7!0.82!75.12!E2F7;;chr14:62213758..62213774,+!p8@HIF1A!0.81!7.17!HIF1A;;chr6:28048343..28048354,+!p1@ZNF165!0.81!5.49!ZNF165;;chr17:41623692..41623715,-!p1@ETV4!0.80!24.69!ETV4;;chr7:28448965..28448994,+!p2@CREB5!0.80!20.04!CREB5;;chr14:62213827..62213853,+!p6@HIF1A!0.80!7.81!HIF1A;;chr3:141747459..141747475,-!p1@TFDP2!0.78!45.58!TFDP2;;chr7:26191809..26191890,+!p1@NFE2L3!0.78!27.01!NFE2L3;;chr12:66357317..66357328,+!p19@HMGA2!0.78!5.06!HMGA2;;chr14:62203595..62203676,+!p4@HIF1A!0.77!9.71!HIF1A;;chr1:59249645..59249656,-!p4@JUN!0.75!12.45!JUN;;chr8:76319876..76319926,+!p1@HNF4G!0.75!4.64!HNF4G;;chr2:176994408..176994492,+!p1@HOXD8!0.75!4.64!HOXD8;;chr3:69812798..69812824,+!p8@MITF!0.75!4.64!MITF;;chr3:101546827..101546847,+!p2@NFKBIZ!0.74!6.54!NFKBIZ;;chr3:101568349..101568365,+!p1@NFKBIZ!0.73!258.05!NFKBIZ;;chr17:41277372..41277418,-!p1@BRCA1!0.73!17.51!BRCA1;;chr1:8934931..8934947,-!p4@ENO1!0.73!15.61!ENO1;;chr2:46524878..46524891,+!p3@EPAS1!0.73!8.23!EPAS1;;chr17:46622229..46622257,-!p6@HOXB2!0.73!5.27!HOXB2;;chr3:69915369..69915381,+!p4@MITF!0.73!4.43!MITF;;chr13:79177703..79177729,-!p2@POU4F1!0.73!4.43!POU4F1;;chr15:67357924..67357952,+!p2@SMAD3!0.72!31.86!SMAD3;;chr7:27135591..27135658,-!p1@HOXA1!0.72!8.65!HOXA1;;chr5:170736243..170736279,+!p1@TLX3!0.72!4.22!TLX3;;chr3:69811882..69811898,+!p6@MITF!0.72!4.22!MITF;;chr17:46688334..46688385,-!p1@HOXB7!0.70!6.12!HOXB7;;chr5:170736216..170736238,+!p2@TLX3!0.70!4.01!TLX3;;chr19:22235279..22235301,+!p1@ZNF257!0.69!8.02!ZNF257;;chr10:104154246..104154347,+!p3@NFKB2!0.68!26.16!NFKB2;;chr16:51185172..51185197,-!p1@SALL1!0.68!3.80!SALL1;;chr2:176969228..176969260,+!p1@HOXD11!0.68!3.80!HOXD11;;chr3:69915385..69915438,+!p3@MITF!0.68!3.80!MITF;;chr8:77593474..77593612,+!p1@ZFHX4!0.67!17.51!ZFHX4;;chr17:41622834..41622883,-!p6@ETV4!0.67!4.64!ETV4;;chr3:157823517..157823562,-!p1@SHOX2!0.67!4.01!SHOX2;;chr6:44233252..44233296,-!p1@NFKBIE!0.66!41.14!NFKBIE;;chr5:72744594..72744609,-!p1@FOXD1!0.66!18.78!FOXD1;;chr14:35872453..35872485,-!p2@NFKBIA!0.66!9.71!NFKBIA;;chr19:48774586..48774670,+!p1@ZNF114!0.66!4.64!ZNF114;;chr12:85673977..85674015,+!p1@ALX1!0.66!3.59!ALX1;;chr18:55102598..55102623,+!p1@ONECUT2!0.66!3.59!ONECUT2;;chr5:172662197..172662216,-!p1@NKX2-5!0.66!3.59!NKX2-5;;chr2:191906489..191906517,-!p6@STAT4!0.66!3.59!STAT4;;chr16:29818160..29818188,+!p6@MAZ!0.65!18.78!MAZ;;chr16:1429627..1429662,-!p2@UNKL!0.65!11.39!UNKL;;chr22:42269885..42269899,+!p4@SREBF2!0.65!5.49!SREBF2;;chr5:72743793..72743855,-!p4@FOXD1!0.65!4.22!FOXD1;;chr10:104155480..104155534,+!p2@NFKB2!0.64!25.32!NFKB2;;chr22:38597987..38598021,+!p2@MAFF!0.64!24.05!MAFF;;chr2:113978342..113978354,-!p18@PAX8!0.64!3.38!PAX8;;chr2:113994209..113994222,-!p11@PAX8!0.64!3.38!PAX8;;chr3:111314230..111314241,-!p2@ZBED2!0.64!3.38!ZBED2;;chr3:21792682..21792720,-!p1@ZNF385D!0.64!3.38!ZNF385D;;chr19:45908292..45908374,-!p1@PPP1R13L!0.63!33.97!PPP1R13L;;chr19:46272106..46272115,-!p3@SIX5!0.63!10.13!SIX5;;chr16:54320675..54320715,-!p1@IRX3!0.63!7.81!IRX3;;chr12:3068466..3068495,+!p3@TEAD4!0.63!7.81!TEAD4;;chr3:5021268..5021282,+!p4@BHLHE40!0.63!7.38!BHLHE40;;chr1:209979467..209979494,-!p1@IRF6!0.63!3.80!IRF6;;chr10:3824332..3824425,-!p4@KLF6!0.62!5.49!KLF6;;chr12:66218469..66218477,+!p16@HMGA2!0.62!3.16!HMGA2;;chr13:100634004..100634025,+!p2@ZIC2!0.62!3.16!ZIC2;;chr6:28321971..28321995,-!p1@ZNF323!0.62!3.16!ZNF323;;chr14:62162258..62162269,+!p2@HIF1A!0.61!35.45!HIF1A;;chr14:35872962..35873025,-!p3@NFKBIA!0.61!8.86!NFKBIA;;chr11:128392309..128392350,-!p3@ETS1!0.61!8.23!ETS1;;chr3:12329320..12329338,+!p4@PPARG!0.61!3.38!PPARG;;chr11:65667846..65667868,-!p1@FOSL1!0.60!96.43!FOSL1;;chr9:4300050..4300118,-!p1@GLIS3!0.60!23.42!GLIS3;;chr3:21792631..21792665,-!p3@ZNF385D!0.60!2.95!ZNF385D;;chr12:19556947..19556956,+!p14@AEBP2!0.60!2.95!AEBP2;;chr14:38064429..38064486,-!p1@FOXA1!0.60!2.95!FOXA1;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.59!15.82!TAL1;;chr19:37096139..37096170,-!p2@ZNF529!0.59!9.28!ZNF529;;chr1:247171347..247171366,-!p2@ZNF695!0.59!5.91!ZNF695;;chr16:54320158..54320200,-!p5@IRX3!0.59!4.43!IRX3;;chr16:29818199..29818216,+!p11@MAZ!0.58!5.06!MAZ;;chr1:23857325..23857416,-!p2@E2F2!0.58!3.38!E2F2;;chr20:42295713..42295738,+!p2@MYBL2!0.57!19.62!MYBL2;;chr17:41623009..41623053,-!p4@ETV4!0.57!4.85!ETV4;;chr12:80083544..80083558,-!p13@PAWR!0.57!3.59!PAWR;;chr17:41623716..41623727,-!p12@ETV4!0.57!2.74!ETV4;;chr17:45928443..45928473,-!p2@SP6!0.57!2.74!SP6;;chr2:176987441..176987454,+!p1@HOXD9!0.57!2.74!HOXD9;;chr2:191878874..191878938,-!p1@STAT1!0.56!179.98!STAT1;;chr14:62162285..62162296,+!p3@HIF1A!0.56!16.67!HIF1A;;chr15:74833584..74833626,+!p1@ARID3B!0.56!7.17!ARID3B;;chr10:35415951..35415975,+!p8@CREM!0.56!4.01!CREM;;chr6:34204921..34204939,+!p3@HMGA1!0.55!97.90!HMGA1;;chr10:51572408..51572454,+!p3@NCOA4!0.55!18.36!NCOA4;;chr1:8924055..8924074,-!p9@ENO1!0.55!5.06!ENO1;;chr1:33004996..33005017,+!p3@ZBTB8A!0.55!3.80!ZBTB8A;;chr5:172662230..172662241,-!p3@NKX2-5!0.55!2.53!NKX2-5;;chr6:10415484..10415508,-!p3@TFAP2A!0.55!2.53!TFAP2A;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!0.55!2.53!POU3F3;;chr2:113999688..113999704,-!p15@PAX8!0.55!2.53!PAX8;;chr3:114343870..114343887,-!p9@ZBTB20!0.55!2.53!ZBTB20;;chr3:69812701..69812729,+!p9@MITF!0.55!2.53!MITF;;chr16:51185363..51185381,-!p4@SALL1!0.55!2.53!SALL1;;chr17:46690839..46690884,-!p1@HOXB8!0.55!2.53!HOXB8;;chr3:5021191..5021202,+!p3@BHLHE40!0.54!7.81!BHLHE40;;chr3:141747441..141747452,-!p4@TFDP2!0.54!3.80!TFDP2;;chr14:21566540..21566580,-!p2@ZNF219!0.54!3.59!ZNF219;;chr6:1612248..1612281,+!p2@FOXC1!0.54!2.74!FOXC1;;chr19:12902289..12902307,+!p1@JUNB!0.53!709.16!JUNB;;chr16:54320646..54320672,-!p2@IRX3!0.53!4.01!IRX3;;chr1:27023752..27023799,+!p4@ARID1A!0.53!3.38!ARID1A;;chr6:21597765..21597779,+!p2@SOX4!0.52!23.84!SOX4;;chr12:3068544..3068597,+!p1@TEAD4!0.52!17.72!TEAD4;;chr17:46655730..46655791,-!p1@HOXB4!0.52!6.96!HOXB4;;chr12:56575310..56575344,-!p3@SMARCC2!0.52!4.22!SMARCC2;;chr14:62203749..62203798,+!p5@HIF1A!0.52!4.01!HIF1A;;chr11:65668011..65668020,-!p3@FOSL1!0.52!2.32!FOSL1;;chr6:10412576..10412599,-!p5@TFAP2A!0.52!2.32!TFAP2A;;chr6:1612300..1612324,+!p3@FOXC1!0.52!2.32!FOXC1;;chr7:28610099..28610113,+!p5@CREB5!0.52!2.32!CREB5;;chr21:38071430..38071456,+!p1@SIM2!0.52!2.32!SIM2;;chr3:193853927..193853944,+!p1@HES1!0.51!96.22!HES1;;chr20:42295745..42295765,+!p1@MYBL2!0.51!48.32!MYBL2;;chr12:80084737..80084763,-!p3@PAWR!0.51!10.55!PAWR;;chr7:19157043..19157088,-!p2@TWIST1!0.51!6.75!TWIST1;;chr5:124084493..124084524,-!p2@ZNF608!0.51!5.91!ZNF608;;chr1:8923998..8924033,-!p8@ENO1!0.51!4.64!ENO1;;chr1:249153309..249153330,-!p4@ZNF692!0.51!2.95!ZNF692;;chr3:5021113..5021180,+!p1@BHLHE40!0.50!202.14!BHLHE40;;chr1:212782094..212782109,+!p1@ATF3!0.50!77.65!ATF3;;chr1:78414307..78414311,-!p4@FUBP1!0.50!5.70!FUBP1;;chr3:21792585..21792625,-!p2@ZNF385D!0.50!2.53!ZNF385D;;chr6:19837592..19837621,+!p1@ID4!0.49!16.67!ID4;;chr11:128392273..128392308,-!p2@ETS1!0.49!11.39!ETS1;;chr20:52185447..52185462,-!p2@ZNF217!0.49!3.80!ZNF217;;chr17:46687959..46688007,-!p2@HOXB7!0.49!3.16!HOXB7;;chr6:1389789..1389821,+!p1@FOXF2!0.49!3.16!FOXF2;;chr7:27183291..27183324,-!p1@HOXA5!0.49!2.11!HOXA5;;chr20:32274179..32274213,-!p1@E2F1!0.48!17.72!E2F1;;chr20:32274150..32274166,-!p2@E2F1!0.48!4.43!E2F1;;chr19:50168861..50168873,-!p3@IRF3!0.48!4.01!IRF3;;chr19:10291229..10291247,-!p5@DNMT1!0.48!2.74!DNMT1;;chr12:27485785..27485816,+!p1@ARNTL2!0.47!18.36!ARNTL2;;chr5:176738887..176738934,-!p1@MXD3!0.47!17.51!MXD3;;chr1:249132556..249132573,+!p3@ZNF672!0.47!7.17!ZNF672;;chr15:67358111..67358122,+!p6@SMAD3!0.47!4.01!SMAD3;;chr5:72744445..72744466,-!p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@@ Line 37: / Line 40: @@
 |fonse_treatment_closure=
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 |name=clear cell carcinoma cell line:JHOC-5
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@@ Line 45: / Line 59: @@
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@@ Line 60: / Line 77: @@
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 |sample_cell_line=JHOC-5
@@ Line 81: / Line 99: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10638-108I8;search_select_hide=table117:FF:10638-108I8
 }}

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FF:10638-108I8: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:32, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0