FF:10694-109G1: Difference between revisions

Latest revision as of 14:33, 3 June 2020

Name:	tridermal teratoma cell line:HGRT
Species:	Human (Homo sapiens)
Library ID:	CNhs11828
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	ANATOMICAL SYSTEM
dev stage	NA
sex	female
age	3 months
cell type	unclassifiable
cell line	HGRT
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005881

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11828		CAGE		DRX008030		DRR008902

Accession ID Hg19

Library id		BAM		CTSS
CNhs11828		DRZ000327		DRZ001712

Accession ID Hg38

Library id		BAM		CTSS
CNhs11828		DRZ011677		DRZ013062

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.118
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.161
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0481
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0397
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.199
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.412
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.0896
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.00569
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.467
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0613
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0608
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.203
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.227
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11828

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.586
MA0003.1	MA0003.1	0.332
MA0004.1	MA0004.1	0.333
MA0006.1	MA0006.1	0.416
MA0007.1	MA0007.1	0.185
MA0009.1	MA0009.1	0.502
MA0014.1	MA0014.1	0.0249
MA0017.1	MA0017.1	0.239
MA0018.2	MA0018.2	0.00778
MA0019.1	MA0019.1	0.308
MA0024.1	MA0024.1	0.727
MA0025.1	MA0025.1	0.192
MA0027.1	MA0027.1	0.561
MA0028.1	MA0028.1	8.16265e-11
MA0029.1	MA0029.1	0.334
MA0030.1	MA0030.1	0.277
MA0031.1	MA0031.1	0.545
MA0035.2	MA0035.2	0.511
MA0038.1	MA0038.1	0.58
MA0039.2	MA0039.2	0.00223
MA0040.1	MA0040.1	0.714
MA0041.1	MA0041.1	0.152
MA0042.1	MA0042.1	0.0597
MA0043.1	MA0043.1	0.00425
MA0046.1	MA0046.1	0.0109
MA0047.2	MA0047.2	0.33
MA0048.1	MA0048.1	0.55
MA0050.1	MA0050.1	5.30264e-5
MA0051.1	MA0051.1	0.00352
MA0052.1	MA0052.1	0.817
MA0055.1	MA0055.1	0.313
MA0057.1	MA0057.1	0.327
MA0058.1	MA0058.1	0.0515
MA0059.1	MA0059.1	0.0697
MA0060.1	MA0060.1	0.052
MA0061.1	MA0061.1	0.466
MA0062.2	MA0062.2	2.33291e-18
MA0065.2	MA0065.2	0.0627
MA0066.1	MA0066.1	0.857
MA0067.1	MA0067.1	0.091
MA0068.1	MA0068.1	6.41662e-4
MA0069.1	MA0069.1	0.378
MA0070.1	MA0070.1	0.633
MA0071.1	MA0071.1	0.838
MA0072.1	MA0072.1	0.359
MA0073.1	MA0073.1	0.419
MA0074.1	MA0074.1	0.596
MA0076.1	MA0076.1	2.02932e-11
MA0077.1	MA0077.1	0.725
MA0078.1	MA0078.1	0.0309
MA0079.2	MA0079.2	0.418
MA0080.2	MA0080.2	3.41199e-7
MA0081.1	MA0081.1	0.00191
MA0083.1	MA0083.1	0.00107
MA0084.1	MA0084.1	0.018
MA0087.1	MA0087.1	0.426
MA0088.1	MA0088.1	0.0506
MA0090.1	MA0090.1	6.34769e-5
MA0091.1	MA0091.1	0.169
MA0092.1	MA0092.1	0.236
MA0093.1	MA0093.1	0.277
MA0099.2	MA0099.2	0.202
MA0100.1	MA0100.1	0.788
MA0101.1	MA0101.1	0.385
MA0102.2	MA0102.2	0.713
MA0103.1	MA0103.1	0.00847
MA0104.2	MA0104.2	0.0055
MA0105.1	MA0105.1	0.261
MA0106.1	MA0106.1	0.937
MA0107.1	MA0107.1	0.634
MA0108.2	MA0108.2	0.00603
MA0111.1	MA0111.1	0.508
MA0112.2	MA0112.2	0.139
MA0113.1	MA0113.1	0.706
MA0114.1	MA0114.1	0.052
MA0115.1	MA0115.1	0.147
MA0116.1	MA0116.1	0.0642
MA0117.1	MA0117.1	0.437
MA0119.1	MA0119.1	0.0314
MA0122.1	MA0122.1	0.944
MA0124.1	MA0124.1	0.651
MA0125.1	MA0125.1	0.881
MA0131.1	MA0131.1	0.0608
MA0135.1	MA0135.1	0.328
MA0136.1	MA0136.1	2.44345e-9
MA0137.2	MA0137.2	0.298
MA0138.2	MA0138.2	0.969
MA0139.1	MA0139.1	0.00463
MA0140.1	MA0140.1	0.798
MA0141.1	MA0141.1	0.503
MA0142.1	MA0142.1	0.0747
MA0143.1	MA0143.1	0.231
MA0144.1	MA0144.1	0.854
MA0145.1	MA0145.1	0.731
MA0146.1	MA0146.1	0.61
MA0147.1	MA0147.1	0.0142
MA0148.1	MA0148.1	0.315
MA0149.1	MA0149.1	0.733
MA0150.1	MA0150.1	0.69
MA0152.1	MA0152.1	0.0107
MA0153.1	MA0153.1	0.575
MA0154.1	MA0154.1	0.132
MA0155.1	MA0155.1	0.806
MA0156.1	MA0156.1	5.48846e-9
MA0157.1	MA0157.1	0.595
MA0159.1	MA0159.1	0.222
MA0160.1	MA0160.1	0.634
MA0162.1	MA0162.1	0.807
MA0163.1	MA0163.1	0.0346
MA0164.1	MA0164.1	0.281
MA0258.1	MA0258.1	0.282
MA0259.1	MA0259.1	0.103

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11828

Novel motif	Logo	P-value
1	1	0.756
10	10	0.0685
100	100	0.294
101	101	0.685
102	102	0.0298
103	103	0.939
104	104	0.499
105	105	0.104
106	106	0.277
107	107	0.009
108	108	0.5
109	109	0.14
11	11	0.864
110	110	0.696
111	111	0.665
112	112	0.0411
113	113	0.485
114	114	0.45
115	115	0.618
116	116	0.761
117	117	0.0182
118	118	0.19
119	119	0.238
12	12	0.0473
120	120	0.0576
121	121	0.00773
122	122	0.188
123	123	0.705
124	124	0.0367
125	125	0.456
126	126	0.93
127	127	0.191
128	128	0.0121
129	129	0.307
13	13	0.0133
130	130	0.381
131	131	0.299
132	132	0.523
133	133	0.474
134	134	0.401
135	135	0.543
136	136	0.0346
137	137	0.173
138	138	0.745
139	139	0.815
14	14	0.717
140	140	0.726
141	141	0.121
142	142	0.872
143	143	0.633
144	144	0.87
145	145	0.819
146	146	0.513
147	147	0.0993
148	148	0.14
149	149	0.906
15	15	0.8
150	150	0.596
151	151	0.951
152	152	0.912
153	153	0.629
154	154	0.744
155	155	0.726
156	156	0.453
157	157	0.173
158	158	0.809
159	159	0.884
16	16	0.7
160	160	0.696
161	161	0.317
162	162	0.0421
163	163	0.423
164	164	0.0904
165	165	0.582
166	166	0.129
167	167	0.685
168	168	0.841
169	169	0.757
17	17	0.0492
18	18	0.193
19	19	0.515
2	2	0.434
20	20	0.272
21	21	0.559
22	22	0.382
23	23	0.00504
24	24	0.927
25	25	0.0593
26	26	0.537
27	27	0.993
28	28	0.471
29	29	0.00124
3	3	0.738
30	30	0.169
31	31	0.619
32	32	7.08089e-4
33	33	0.103
34	34	0.31
35	35	0.452
36	36	0.193
37	37	0.198
38	38	0.612
39	39	0.764
4	4	0.563
40	40	0.0508
41	41	0.653
42	42	0.845
43	43	0.885
44	44	0.0845
45	45	0.337
46	46	0.668
47	47	0.141
48	48	0.175
49	49	0.398
5	5	0.51
50	50	0.39
51	51	0.278
52	52	0.0697
53	53	0.979
54	54	0.232
55	55	0.14
56	56	0.422
57	57	0.462
58	58	0.575
59	59	0.394
6	6	0.345
60	60	0.597
61	61	0.511
62	62	0.889
63	63	0.517
64	64	0.826
65	65	0.223
66	66	0.848
67	67	0.915
68	68	0.584
69	69	0.665
7	7	0.078
70	70	0.719
71	71	0.0582
72	72	0.596
73	73	0.0981
74	74	0.166
75	75	0.0101
76	76	0.222
77	77	0.662
78	78	0.137
79	79	0.848
8	8	0.768
80	80	0.846
81	81	0.615
82	82	0.517
83	83	0.961
84	84	0.97
85	85	0.79
86	86	0.59
87	87	0.0212
88	88	0.143
89	89	0.406
9	9	0.142
90	90	0.398
91	91	0.837
92	92	0.134
93	93	0.822
94	94	0.0381
95	95	0.00464
96	96	0.307
97	97	0.166
98	98	0.465
99	99	0.0188

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11828

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
DOID:3307 teratoma
EFO:0002091 biological replicate
FF:0000003 cell line sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
3095 (germ cell and embryonal cancer)
2994 (germ cell cancer)
3307 (teratoma)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007923
+|DRA_sample_Accession=CAGE@SAMD00005881
+|accession_numbers=CAGE;DRX008030;DRR008902;DRZ000327;DRZ001712;DRZ011677;DRZ013062
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=
@@ Line 8: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr16:86544113..86544145,+!p1@FOXF1!2.29!235.55!FOXF1;;chr10:28034739..28034756,-!p1@MKX!2.21!162.18!MKX;;chr2:176969228..176969260,+!p1@HOXD11!1.89!77.23!HOXD11;;chr12:52445218..52445237,+!p1@NR4A1!1.86!847.59!NR4A1;;chr4:174451370..174451387,-!p1@HAND2!1.85!69.51!HAND2;;chr9:132427883..132427951,+!p2@PRRX2!1.85!69.51!PRRX2;;chr8:106330656..106330684,+!p1@ZFPM2!1.72!131.29!ZFPM2;;chr1:170633348..170633399,+!p2@PRRX1!1.72!69.51!PRRX1;;chr2:176969179..176969226,+!p2@HOXD11!1.68!46.34!HOXD11;;chr9:132427972..132428056,+!p1@PRRX2!1.66!57.92!PRRX2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.66!44.41!ZBED1;;chr12:115122318..115122331,-!p2@TBX3!1.64!42.48!TBX3;;chr12:66218255..66218304,+!p3@HMGA2!1.61!102.33!HMGA2;;chr6:134210243..134210257,+!p1@TCF21!1.60!38.61!TCF21;;chr7:27224842..27224872,-!p1@HOXA11!1.60!38.61!HOXA11;;chr14:61116183..61116208,-!p1@SIX1!1.57!131.29!SIX1;;chr1:170632285..170632309,+!p1@PRRX1!1.57!40.55!PRRX1;;chr20:50179368..50179392,-!p2@NFATC2!1.53!42.48!NFATC2;;chr2:5832508..5832524,+!p1@SOX11!1.53!32.82!SOX11;;chr7:27224795..27224840,-!p2@HOXA11!1.53!32.82!HOXA11;;chr11:65686802..65686818,+!p6@DRAP1!1.50!52.13!DRAP1;;chr15:57511609..57511651,+!p2@TCF12!1.50!50.20!TCF12;;chr7:27192185..27192209,-!p1@HOXA3!1.50!30.89!HOXA3;;chr12:66218598..66218645,+!p2@HMGA2!1.49!133.22!HMGA2;;chr7:19157248..19157268,-!p1@TWIST1!1.47!77.23!TWIST1;;chr8:106330696..106330719,+!p2@ZFPM2!1.45!34.75!ZFPM2;;chr12:115122303..115122314,-!p6@TBX3!1.42!25.10!TBX3;;chr4:174450089..174450153,-!p2@HAND2!1.42!25.10!HAND2;;chr4:81118647..81118666,+!p1@PRDM8!1.41!32.82!PRDM8;;chr5:321810..321877,+!p1@AHRR!1.40!75.30!AHRR;;chr5:50679228..50679288,+!p1@ISL1!1.38!23.17!ISL1;;chr1:197886461..197886558,+!p1@LHX9!1.35!21.24!LHX9;;chr5:134369905..134369972,-!p1@PITX1!1.33!30.89!PITX1;;chr2:19558373..19558392,-!p1@OSR1!1.26!46.34!OSR1;;chr9:77112244..77112262,+!p1@RORB!1.26!19.31!RORB;;chr4:174451350..174451363,-!p3@HAND2!1.26!17.38!HAND2;;chr1:170633058..170633084,+!p5@PRRX1!1.26!17.38!PRRX1;;chr10:28034772..28034783,-!p4@MKX!1.26!17.38!MKX;;chr16:51185172..51185197,-!p1@SALL1!1.26!17.38!SALL1;;chr7:28448965..28448994,+!p2@CREB5!1.25!57.92!CREB5;;chr8:60031682..60031710,-!p2@TOX!1.25!27.03!TOX;;chr2:239756671..239756732,+!p1@TWIST2!1.24!52.13!TWIST2;;chr5:92919452..92919496,+!p11@NR2F1!1.22!15.45!NR2F1;;chr10:131762504..131762555,-!p1@EBF3!1.22!15.45!EBF3;;chr3:18466787..18466839,-!p1@SATB1!1.20!65.64!SATB1;;chr2:239756739..239756755,+!p2@TWIST2!1.20!25.10!TWIST2;;chr3:169381420..169381535,-!p1@MECOM!1.20!17.38!MECOM;;chr11:46299199..46299233,+!p1@CREB3L1!1.19!73.37!CREB3L1;;chr8:60031619..60031676,-!p1@TOX!1.19!30.89!TOX;;chr5:137804405..137804444,+!p3@EGR1!1.19!17.38!EGR1;;chr12:115122005..115122016,-!p3@TBX3!1.19!17.38!TBX3;;chr5:137801160..137801176,+!p1@EGR1!1.15!1297.45!EGR1;;chrX:66763815..66763854,+!p2@AR!1.15!17.38!AR;;chr6:45390025..45390076,+!p2@RUNX2!1.14!30.89!RUNX2;;chr20:42543506..42543549,+!p2@TOX2!1.14!30.89!TOX2;;chr6:10412600..10412637,-!p1@TFAP2A!1.14!21.24!TFAP2A;;chr10:63809106..63809127,+!p1@ARID5B!1.13!167.97!ARID5B;;chr6:10415276..10415341,-!p2@TFAP2A!1.13!15.45!TFAP2A;;chr15:37390850..37390909,-!p3@MEIS2!1.11!23.17!MEIS2;;chr8:67525443..67525459,-!p2@MYBL1!1.10!17.38!MYBL1;;chr7:27205136..27205164,-!p1@HOXA9!1.10!11.58!HOXA9;;chr1:170632723..170632739,+!p8@PRRX1!1.10!11.58!PRRX1;;chr1:164528616..164528660,+!p5@PBX1!1.09!23.17!PBX1;;chr12:115121962..115121987,-!p1@TBX3!1.08!92.67!TBX3;;chr12:66218183..66218209,+!p4@HMGA2!1.08!21.24!HMGA2;;chr2:157189180..157189290,-!p1@NR4A2!1.07!55.99!NR4A2;;chr20:42543441..42543497,+!p1@TOX2!1.07!48.27!TOX2;;chr8:22550982..22550999,-!p1@EGR3!1.07!30.89!EGR3;;chrX:66763856..66763896,+!p1@AR!1.07!15.45!AR;;chr8:49833978..49833996,-!p1@SNAI2!1.06!218.17!SNAI2;;chr5:137804484..137804498,+!p2@EGR1!1.06!42.48!EGR1;;chr15:37392616..37392638,-!p2@MEIS2!1.06!32.82!MEIS2;;chr17:59477233..59477263,+!p1@TBX2!1.06!32.82!TBX2;;chr6:1312325..1312340,+!p1@FOXQ1!1.06!17.38!FOXQ1;;chr15:96874012..96874042,+!p2@NR2F2!1.05!92.67!NR2F2;;chr11:46299539..46299620,+!p2@CREB3L1!1.05!17.38!CREB3L1;;chr12:66218573..66218596,+!p7@HMGA2!1.05!15.45!HMGA2;;chr8:73921136..73921151,+!p2@TERF1!1.05!15.45!TERF1;;chr14:75745523..75745537,+!p1@FOS!1.04!1208.63!FOS;;chr15:37392724..37392757,-!p1@MEIS2!1.04!46.34!MEIS2;;chr1:170633262..170633285,+!p3@PRRX1!1.04!11.58!PRRX1;;chr20:50721803..50721857,-!p2@ZFP64!1.03!15.45!ZFP64;;chr19:49864746..49864780,-!p2@TEAD2!1.03!13.52!TEAD2;;chr5:134369879..134369898,-!p2@PITX1!1.03!9.65!PITX1;;chr7:27205106..27205134,-!p2@HOXA9!1.03!9.65!HOXA9;;chrX:66764343..66764362,+!p4@AR!1.03!9.65!AR;;chr12:115121770..115121781,-!p4@TBX3!1.03!9.65!TBX3;;chr17:59529743..59529798,+!p1@TBX4!1.03!9.65!TBX4;;chr2:185463521..185463557,+!p3@ZNF804A!1.03!9.65!ZNF804A;;chr8:28243661..28243709,-!p1@ZNF395!1.01!54.06!ZNF395;;chr3:12329358..12329393,+!p3@PPARG!1.01!23.17!PPARG;;chr8:60031762..60031803,-!p3@TOX!1.01!13.52!TOX;;chr3:157823517..157823562,-!p1@SHOX2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@@ Line 38: / Line 40: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/tridermal%2520teratoma%2520cell%2520line%253aHGRT.CNhs11828.10694-109G1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/tridermal%2520teratoma%2520cell%2520line%253aHGRT.CNhs11828.10694-109G1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/tridermal%2520teratoma%2520cell%2520line%253aHGRT.CNhs11828.10694-109G1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/tridermal%2520teratoma%2520cell%2520line%253aHGRT.CNhs11828.10694-109G1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/tridermal%2520teratoma%2520cell%2520line%253aHGRT.CNhs11828.10694-109G1.hg38.nobarcode.ctss.bed.gz
 |id=FF:10694-109G1
 |is_a=DOID:3307;;EFO:0002091;;FF:0000003;;FF:0000210
 |is_obsolete=
-|library_ids=CNhs11828
+|library_id=CNhs11828
+|library_id_phase_based=2:CNhs11828
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10694
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10694
 |name=tridermal teratoma cell line:HGRT
 |namespace=FANTOM5
@@ Line 47: / Line 59: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11828,LSID829,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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-}} {{DRAAccessionNumbers
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-|DRA_sample_Accession=CAGE@DRS007923
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 }}

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FF:10694-109G1: Difference between revisions

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Latest revision as of 14:33, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0