FF:10696-109G3: Difference between revisions

Latest revision as of 14:33, 3 June 2020

Name:	mesodermal tumor cell line:HIRS-BM
Species:	Human (Homo sapiens)
Library ID:	CNhs12191
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	ANATOMICAL SYSTEM
dev stage	NA
sex	female
age	16
cell type	unclassifiable
cell line	HIRS-BM
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005658

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12191		CAGE		DRX007774		DRR008646

Accession ID Hg19

Library id		BAM		CTSS
CNhs12191		DRZ000071		DRZ001456

Accession ID Hg38

Library id		BAM		CTSS
CNhs12191		DRZ011421		DRZ012806

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.195
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.0381
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.148
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.59
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.24
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.406
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.45
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.059
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.116
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.354
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12191

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.637
MA0003.1	MA0003.1	0.574
MA0004.1	MA0004.1	0.269
MA0006.1	MA0006.1	0.344
MA0007.1	MA0007.1	0.647
MA0009.1	MA0009.1	0.00945
MA0014.1	MA0014.1	0.2
MA0017.1	MA0017.1	0.529
MA0018.2	MA0018.2	0.765
MA0019.1	MA0019.1	0.284
MA0024.1	MA0024.1	0.0594
MA0025.1	MA0025.1	0.777
MA0027.1	MA0027.1	0.927
MA0028.1	MA0028.1	0.184
MA0029.1	MA0029.1	0.401
MA0030.1	MA0030.1	0.793
MA0031.1	MA0031.1	0.0884
MA0035.2	MA0035.2	0.678
MA0038.1	MA0038.1	0.192
MA0039.2	MA0039.2	0.432
MA0040.1	MA0040.1	0.213
MA0041.1	MA0041.1	0.157
MA0042.1	MA0042.1	0.183
MA0043.1	MA0043.1	0.278
MA0046.1	MA0046.1	0.037
MA0047.2	MA0047.2	0.271
MA0048.1	MA0048.1	0.818
MA0050.1	MA0050.1	3.60179e-4
MA0051.1	MA0051.1	1.93014e-4
MA0052.1	MA0052.1	0.0976
MA0055.1	MA0055.1	0.47
MA0057.1	MA0057.1	0.862
MA0058.1	MA0058.1	0.217
MA0059.1	MA0059.1	0.0298
MA0060.1	MA0060.1	0.469
MA0061.1	MA0061.1	0.169
MA0062.2	MA0062.2	0.0202
MA0065.2	MA0065.2	0.00727
MA0066.1	MA0066.1	0.44
MA0067.1	MA0067.1	0.78
MA0068.1	MA0068.1	0.017
MA0069.1	MA0069.1	0.355
MA0070.1	MA0070.1	0.759
MA0071.1	MA0071.1	0.311
MA0072.1	MA0072.1	0.941
MA0073.1	MA0073.1	0.424
MA0074.1	MA0074.1	0.134
MA0076.1	MA0076.1	0.319
MA0077.1	MA0077.1	0.338
MA0078.1	MA0078.1	0.403
MA0079.2	MA0079.2	0.923
MA0080.2	MA0080.2	0.0803
MA0081.1	MA0081.1	0.306
MA0083.1	MA0083.1	2.35478e-8
MA0084.1	MA0084.1	0.127
MA0087.1	MA0087.1	0.601
MA0088.1	MA0088.1	0.461
MA0090.1	MA0090.1	1.55531e-6
MA0091.1	MA0091.1	0.203
MA0092.1	MA0092.1	0.332
MA0093.1	MA0093.1	0.427
MA0099.2	MA0099.2	0.00875
MA0100.1	MA0100.1	0.731
MA0101.1	MA0101.1	0.917
MA0102.2	MA0102.2	0.328
MA0103.1	MA0103.1	1.56508e-4
MA0104.2	MA0104.2	0.0101
MA0105.1	MA0105.1	0.0136
MA0106.1	MA0106.1	0.287
MA0107.1	MA0107.1	0.213
MA0108.2	MA0108.2	0.177
MA0111.1	MA0111.1	0.597
MA0112.2	MA0112.2	0.0411
MA0113.1	MA0113.1	0.177
MA0114.1	MA0114.1	0.0299
MA0115.1	MA0115.1	0.128
MA0116.1	MA0116.1	0.0267
MA0117.1	MA0117.1	0.799
MA0119.1	MA0119.1	0.194
MA0122.1	MA0122.1	0.574
MA0124.1	MA0124.1	0.731
MA0125.1	MA0125.1	0.284
MA0131.1	MA0131.1	0.163
MA0135.1	MA0135.1	0.409
MA0136.1	MA0136.1	0.04
MA0137.2	MA0137.2	0.957
MA0138.2	MA0138.2	0.477
MA0139.1	MA0139.1	0.14
MA0140.1	MA0140.1	0.742
MA0141.1	MA0141.1	0.0663
MA0142.1	MA0142.1	0.673
MA0143.1	MA0143.1	0.78
MA0144.1	MA0144.1	0.567
MA0145.1	MA0145.1	0.946
MA0146.1	MA0146.1	0.0122
MA0147.1	MA0147.1	0.013
MA0148.1	MA0148.1	0.169
MA0149.1	MA0149.1	0.463
MA0150.1	MA0150.1	0.734
MA0152.1	MA0152.1	0.419
MA0153.1	MA0153.1	0.778
MA0154.1	MA0154.1	0.193
MA0155.1	MA0155.1	0.213
MA0156.1	MA0156.1	0.963
MA0157.1	MA0157.1	0.0987
MA0159.1	MA0159.1	0.0534
MA0160.1	MA0160.1	0.931
MA0162.1	MA0162.1	0.343
MA0163.1	MA0163.1	2.37726e-5
MA0164.1	MA0164.1	0.879
MA0258.1	MA0258.1	0.0632
MA0259.1	MA0259.1	0.0989

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12191

Novel motif	Logo	P-value
1	1	0.176
10	10	0.0551
100	100	0.125
101	101	0.377
102	102	0.0912
103	103	0.421
104	104	0.186
105	105	0.0449
106	106	0.154
107	107	0.269
108	108	0.345
109	109	0.121
11	11	0.324
110	110	0.339
111	111	0.0723
112	112	0.668
113	113	0.946
114	114	0.393
115	115	0.00524
116	116	0.22
117	117	0.0388
118	118	0.192
119	119	0.567
12	12	0.303
120	120	0.462
121	121	0.513
122	122	0.865
123	123	0.0666
124	124	0.913
125	125	0.694
126	126	0.476
127	127	0.81
128	128	0.876
129	129	0.158
13	13	0.0816
130	130	0.0705
131	131	0.186
132	132	0.858
133	133	0.1
134	134	0.5
135	135	0.471
136	136	0.181
137	137	0.937
138	138	0.512
139	139	0.8
14	14	0.986
140	140	0.449
141	141	0.94
142	142	0.595
143	143	0.409
144	144	0.854
145	145	0.864
146	146	0.0854
147	147	0.61
148	148	0.0358
149	149	0.374
15	15	0.181
150	150	0.911
151	151	0.951
152	152	0.682
153	153	0.323
154	154	0.736
155	155	0.0722
156	156	0.61
157	157	0.631
158	158	0.867
159	159	0.483
16	16	0.881
160	160	0.122
161	161	0.173
162	162	0.462
163	163	0.683
164	164	0.034
165	165	0.253
166	166	0.0438
167	167	0.112
168	168	0.395
169	169	0.296
17	17	0.574
18	18	0.241
19	19	0.846
2	2	0.685
20	20	0.34
21	21	0.349
22	22	0.915
23	23	0.0942
24	24	0.773
25	25	0.44
26	26	0.271
27	27	0.861
28	28	0.427
29	29	0.133
3	3	0.356
30	30	0.176
31	31	0.277
32	32	0.6
33	33	0.327
34	34	0.343
35	35	0.522
36	36	0.241
37	37	0.136
38	38	0.724
39	39	0.571
4	4	0.866
40	40	0.111
41	41	0.186
42	42	0.756
43	43	0.833
44	44	0.00796
45	45	0.162
46	46	0.372
47	47	0.11
48	48	0.152
49	49	0.926
5	5	0.202
50	50	0.758
51	51	0.936
52	52	0.804
53	53	0.72
54	54	0.487
55	55	0.125
56	56	0.881
57	57	0.776
58	58	0.38
59	59	0.936
6	6	0.503
60	60	0.738
61	61	0.152
62	62	0.283
63	63	0.955
64	64	0.47
65	65	0.818
66	66	0.227
67	67	0.804
68	68	0.547
69	69	0.946
7	7	0.998
70	70	0.431
71	71	0.0263
72	72	0.657
73	73	0.259
74	74	0.492
75	75	0.0364
76	76	0.144
77	77	0.814
78	78	0.676
79	79	0.139
8	8	0.226
80	80	0.00483
81	81	0.622
82	82	0.46
83	83	0.614
84	84	0.069
85	85	0.494
86	86	0.541
87	87	0.275
88	88	0.492
89	89	0.87
9	9	0.322
90	90	0.515
91	91	0.761
92	92	0.658
93	93	0.149
94	94	0.885
95	95	0.071
96	96	0.0757
97	97	0.102
98	98	0.0584
99	99	0.509

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12191

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
CL:0000222 mesodermal cell
EFO:0002091 biological replicate
FF:0000003 cell line sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002321 (embryonic cell)
0000255 (eukaryotic cell)
0000222 (mesodermal cell)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000222 (mesodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007669
+|DRA_sample_Accession=CAGE@SAMD00005658
+|accession_numbers=CAGE;DRX007774;DRR008646;DRZ000071;DRZ001456;DRZ011421;DRZ012806
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002321,CL:0000255,CL:0000222
@@ Line 8: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr16:86600426..86600441,+!p1@FOXC2!1.90!188.02!FOXC2;;chr1:40105299..40105326,-!p1@HEYL!1.83!66.88!HEYL;;chr2:145277882..145277967,-!p3@ZEB2!1.76!95.90!ZEB2;;chr10:63809013..63809041,+!p3@ARID5B!1.66!235.97!ARID5B;;chr6:19837592..19837621,+!p1@ID4!1.64!251.11!ID4;;chr7:44143925..44143970,+!p1@AEBP1!1.61!831.56!AEBP1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.58!36.59!ZBED1;;chr9:132427883..132427951,+!p2@PRRX2!1.56!35.33!PRRX2;;chr8:106330656..106330684,+!p1@ZFPM2!1.46!71.93!ZFPM2;;chr20:30433396..30433414,-!p1@FOXS1!1.42!25.24!FOXS1;;chr2:223163706..223163730,-!p1@PAX3!1.42!25.24!PAX3;;chr7:44143978..44143989,+!p2@AEBP1!1.39!42.90!AEBP1;;chr8:60031934..60031986,-!p6@TOX!1.37!22.71!TOX;;chr9:132427972..132428056,+!p1@PRRX2!1.35!27.76!PRRX2;;chr6:126070769..126070801,+!p1@HEY2!1.34!23.98!HEY2;;chr8:106330696..106330719,+!p2@ZFPM2!1.32!25.24!ZFPM2;;chr10:63808979..63808990,+!p8@ARID5B!1.31!21.45!ARID5B;;chr11:46299199..46299233,+!p1@CREB3L1!1.29!93.38!CREB3L1;;chr7:44143997..44144008,+!p3@AEBP1!1.28!22.71!AEBP1;;chr6:10412600..10412637,-!p1@TFAP2A!1.27!29.02!TFAP2A;;chr6:134210243..134210257,+!p1@TCF21!1.27!17.67!TCF21;;chr1:197886461..197886558,+!p1@LHX9!1.27!17.67!LHX9;;chr1:119530493..119530572,-!p1@TBX15!1.21!15.14!TBX15;;chr1:170632959..170632987,+!p4@PRRX1!1.17!15.14!PRRX1;;chr2:237077022..237077038,-!p1@GBX2!1.17!13.88!GBX2;;chr18:52989031..52989079,-!p2@TCF4!1.16!31.55!TCF4;;chr8:60031682..60031710,-!p2@TOX!1.15!21.45!TOX;;chr15:96876966..96877017,+!p12@NR2F2!1.15!18.93!NR2F2;;chr3:178789522..178789564,-!p2@ZMAT3!1.13!90.85!ZMAT3;;chr7:1577899..1577943,+!p3@MAFK!1.13!12.62!MAFK;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.13!12.62!PEG3;;chr10:63809106..63809127,+!p1@ARID5B!1.12!162.78!ARID5B;;chr1:170632285..170632309,+!p1@PRRX1!1.12!13.88!PRRX1;;chr10:63809077..63809089,+!p5@ARID5B!1.10!25.24!ARID5B;;chr2:46524537..46524553,+!p1@EPAS1!1.09!1118.00!EPAS1;;chr19:2867298..2867317,+!p2@ZNF556!1.09!11.36!ZNF556;;chr17:59477233..59477263,+!p1@TBX2!1.03!30.28!TBX2;;chr2:121493492..121493537,+!p2@GLI2!1.03!16.40!GLI2;;chr12:80085061..80085119,-!p6@PAWR!1.02!15.14!PAWR;;chr2:19558373..19558392,-!p1@OSR1!1.00!25.24!OSR1;;chr16:86544113..86544145,+!p1@FOXF1!1.00!11.36!FOXF1;;chr2:238536207..238536290,+!p2@LRRFIP1!0.99!87.07!LRRFIP1;;chr3:37217736..37217753,-!p2@LRRFIP2!0.99!37.86!LRRFIP2;;chr21:30671690..30671762,+!p2@BACH1!0.99!30.28!BACH1;;chr1:50889103..50889145,-!p1@DMRTA2!0.99!8.83!DMRTA2;;chr6:50786591..50786614,+!p1@TFAP2B!0.99!8.83!TFAP2B;;chr10:63809134..63809145,+!p6@ARID5B!0.98!20.19!ARID5B;;chr6:126112074..126112144,+!p1@NCOA7!0.97!114.83!NCOA7;;chr2:172967621..172967637,-!p1@DLX2!0.97!22.71!DLX2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.97!8.83!GLIS1;;chr6:10415276..10415341,-!p2@TFAP2A!0.96!10.09!TFAP2A;;chr1:214161272..214161322,+!p1@PROX1!0.95!11.36!PROX1;;chr10:63809090..63809097,+!p7@ARID5B!0.95!11.36!ARID5B;;chr6:10412392..10412409,-!p4@TFAP2A!0.94!8.83!TFAP2A;;chr2:85981222..85981259,+!p2@ATOH8!0.93!12.62!ATOH8;;chr2:176994408..176994492,+!p1@HOXD8!0.93!7.57!HOXD8;;chr2:45236540..45236577,-!p1@SIX2!0.93!7.57!SIX2;;chr2:85981073..85981091,+!p5@ATOH8!0.93!7.57!ATOH8;;chr2:85981107..85981120,+!p3@ATOH8!0.93!7.57!ATOH8;;chr6:126070748..126070768,+!p2@HEY2!0.93!7.57!HEY2;;chr11:125034640..125034655,+!p1@PKNOX2!0.93!7.57!PKNOX2;;chr16:86600458..86600461,+!p3@FOXC2!0.93!7.57!FOXC2;;chr17:41739283..41739297,-!p1@MEOX1!0.93!7.57!MEOX1;;chr9:96717629..96717644,-!p1@BARX1!0.93!7.57!BARX1;;chr15:96873921..96873946,+!p1@NR2F2!0.92!215.78!NR2F2;;chr16:73093174..73093209,-!p3@ZFHX3!0.92!10.09!ZFHX3;;chr8:72756667..72756736,-!p2@MSC!0.91!11.36!MSC;;chr14:61116183..61116208,-!p1@SIX1!0.90!27.76!SIX1;;chr3:178789566..178789620,-!p1@ZMAT3!0.89!126.18!ZMAT3;;chr8:60031762..60031803,-!p3@TOX!0.89!10.09!TOX;;chr8:60031809..60031835,-!p4@TOX!0.89!8.83!TOX;;chr20:50179368..50179392,-!p2@NFATC2!0.89!8.83!NFATC2;;chr1:61547894..61547968,+!p2@NFIA!0.88!20.19!NFIA;;chr11:46299539..46299620,+!p2@CREB3L1!0.88!11.36!CREB3L1;;chr1:170633262..170633285,+!p3@PRRX1!0.88!7.57!PRRX1;;chr5:139487608..139487663,+!p3@PURA!0.86!13.88!PURA;;chr7:96654133..96654150,-!p1@DLX5!0.86!6.31!DLX5;;chr22:19748231..19748317,+!p1@TBX1!0.86!6.31!TBX1;;chr3:147127142..147127168,+!p1@ZIC1!0.86!6.31!ZIC1;;chr8:49833978..49833996,-!p1@SNAI2!0.84!129.97!SNAI2;;chr12:66218598..66218645,+!p2@HMGA2!0.84!29.02!HMGA2;;chr5:174151553..174151610,+!p1@MSX2!0.84!10.09!MSX2;;chr2:231084639..231084654,-!p2@SP110!0.84!10.09!SP110;;chr6:35310395..35310410,+!p2@PPARD!0.83!23.98!PPARD;;chr15:96873984..96873999,+!p3@NR2F2!0.82!44.16!NR2F2;;chr9:116638565..116638606,+!p1@ZNF618!0.82!25.24!ZNF618;;chr5:158526459..158526481,-!p2@EBF1!0.82!7.57!EBF1;;chr17:59477275..59477286,+!p3@TBX2!0.82!7.57!TBX2;;chr7:28725740..28725778,+!p1@CREB5!0.81!53.00!CREB5;;chr1:164528410..164528428,+!p1@PBX1!0.81!44.16!PBX1;;chr12:124873852..124873881,-!p3@NCOR2!0.81!35.33!NCOR2;;chr2:74229812..74229867,+!p1@TET3!0.79!13.88!TET3;;chr2:145277640..145277771,-!p1@ZEB2!0.78!73.19!ZEB2;;chr1:935467..935484,-!p1@HES4!0.78!23.98!HES4;;chr6:126102292..126102329,+!p3@NCOA7!0.78!17.67!NCOA7;;chr19:53636125..53636178,-!p1@ZNF415!0.78!15.14!ZNF415;;chr2:200323414..200323455,-!p1@SATB2!0.78!11.36!SATB2;;chr6:85473156..85473210,-!p2@TBX18!0.78!6.31!TBX18;;chr5:139492456..139492489,+!p7@PURA!0.78!5.05!PURA;;chr5:174151612..174151633,+!p2@MSX2!0.78!5.05!MSX2;;chr6:10412576..10412599,-!p5@TFAP2A!0.78!5.05!TFAP2A;;chr7:1577952..1577963,+!p8@MAFK!0.78!5.05!MAFK;;chr8:60031840..60031869,-!p5@TOX!0.78!5.05!TOX;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!0.78!5.05!POU3F3;;chr3:71294304..71294332,-!p35@FOXP1!0.78!5.05!FOXP1;;chr4:103423120..103423142,+!p8@NFKB1!0.78!5.05!NFKB1;;chr4:57522598..57522664,-!p3@HOPX!0.78!5.05!HOPX;;chr1:158969727..158969749,+!p11@IFI16!0.78!5.05!IFI16;;chr10:28035133..28035148,-!p3@MKX!0.78!5.05!MKX;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.78!5.05!HOXC5;;chr9:126774018..126774055,+!p1@LHX2!0.78!5.05!LHX2;;chr9:125667618..125667678,-!p2@RC3H2!0.77!23.98!RC3H2;;chr8:60031619..60031676,-!p1@TOX!0.77!11.36!TOX;;chr17:59477197..59477212,+!p2@TBX2!0.77!8.83!TBX2;;chr19:45971246..45971265,+!p1@FOSB!0.76!98.42!FOSB;;chr19:38042240..38042309,+!p2@ZNF540!0.76!7.57!ZNF540;;chr12:125003087..125003141,-!p4@NCOR2!0.76!6.31!NCOR2;;chr5:178368186..178368238,+!p1@ZNF454!0.75!8.83!ZNF454;;chr11:12696071..12696086,+!p3@TEAD1!0.75!6.31!TEAD1;;chr5:137801160..137801176,+!p1@EGR1!0.74!498.43!EGR1;;chr3:114343768..114343822,-!p1@ZBTB20!0.74!21.45!ZBTB20;;chr1:164528384..164528409,+!p3@PBX1!0.74!15.14!PBX1;;chr9:14314522..14314556,-!p3@NFIB!0.74!11.36!NFIB;;chr3:14988878..14988903,+!p7@NR2C2!0.74!6.31!NR2C2;;chr11:46299186..46299195,+!p3@CREB3L1!0.74!5.05!CREB3L1;;chr15:96876340..96876348,+!p22@NR2F2!0.74!5.05!NR2F2;;chr19:16435625..16435682,+!p1@KLF2!0.73!157.73!KLF2;;chr19:57183114..57183145,-!p1@ZNF835!0.73!5.05!ZNF835;;chr16:4366021..4366045,+!p@chr16:4366021..4366045,+!0.72!22.71!GLIS2;;chr5:72744594..72744609,-!p1@FOXD1!0.72!21.45!FOXD1;;chrX:101186981..101187030,-!p1@ZMAT1!0.72!15.14!ZMAT1;;chr16:79633894..79633954,-!p3@MAF!0.72!8.83!MAF;;chr19:12476469..12476509,-!p2@ZNF442!0.72!7.57!ZNF442;;chr3:71631382..71631413,-!p20@FOXP1!0.72!5.05!FOXP1;;chr22:24093267..24093327,-!p1@ZNF70!0.71!31.55!ZNF70;;chr8:80679993..80680011,-!p1@HEY1!0.71!6.31!HEY1;;chr5:137804405..137804444,+!p3@EGR1!0.71!5.05!EGR1;;chr7:28725715..28725727,+!p3@CREB5!0.71!5.05!CREB5;;chr1:23885981..23886002,-!p1@ID3!0.70!793.70!ID3;;chr9:114287433..114287513,+!p1@ZNF483!0.70!11.36!ZNF483;;chr19:12203100..12203132,+!p1@ZNF788!0.70!8.83!ZNF788;;chr19:13134457..13134462,+!p5@NFIX!0.70!7.57!NFIX;;chr19:44764031..44764072,+!p1@ZNF233!0.70!5.05!ZNF233;;chr9:110252035..110252057,-!p1@KLF4!0.69!71.93!KLF4;;chrX:128657457..128657475,-!p1@SMARCA1!0.69!51.74!SMARCA1;;chr1:935398..935465,-!p2@HES4!0.69!8.83!HES4;;chr6:85474299..85474324,-!p1@TBX18!0.69!7.57!TBX18;;chr19:35417939..35417963,+!p3@ZNF30!0.69!5.05!ZNF30;;chr1:61548069..61548102,+!p3@NFIA!0.68!10.09!NFIA;;chr17:20492136..20492165,+!p1@MEIS3P2!0.68!6.31!MEIS3P2;;chr19:31840130..31840160,-!p2@TSHZ3!0.68!6.31!TSHZ3;;chr2:176033066..176033087,-!p2@ATF2!0.68!5.05!ATF2;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!0.68!3.79!POU3F3;;chr2:145277833..145277845,-!p16@ZEB2!0.68!3.79!ZEB2;;chr2:237076992..237077008,-!p2@GBX2!0.68!3.79!GBX2;;chr3:71294213..71294240,-!p30@FOXP1!0.68!3.79!FOXP1;;chr4:57522674..57522699,-!p5@HOPX!0.68!3.79!HOPX;;chr1:119530636..119530653,-!p2@TBX15!0.68!3.79!TBX15;;chr1:3569072..3569093,+!p1@TP73!0.68!3.79!TP73;;chr1:50889155..50889173,-!p2@DMRTA2!0.68!3.79!DMRTA2;;chr20:21494602..21494622,-!p3@NKX2-2!0.68!3.79!NKX2-2;;chr20:30433431..30433442,-!p2@FOXS1!0.68!3.79!FOXS1;;chr9:32551047..32551066,-!p5@TOPORS!0.68!3.79!TOPORS;;chr5:2751785..2751808,-!p2@IRX2!0.68!3.79!IRX2;;chr6:1610178..1610190,+!p5@FOXC1!0.68!3.79!FOXC1;;chr7:88389004..88389019,+!p1@ZNF804B!0.68!3.79!ZNF804B;;chr17:7387459..7387470,-!p10@ZBTB4!0.68!3.79!ZBTB4;;chr18:45935720..45935772,-!p1@ZBTB7C!0.68!3.79!ZBTB7C;;chr19:2867325..2867348,+!p1@ZNF556!0.68!3.79!ZNF556;;chr11:125034586..125034604,+!p3@PKNOX2!0.68!3.79!PKNOX2;;chr11:16629261..16629284,-!p1@SOX6!0.68!3.79!SOX6;;chr11:31832687..31832704,-!p6@PAX6!0.68!3.79!PAX6;;chr12:54394309..54394336,+!p2@HOXC9!0.68!3.79!HOXC9;;chr13:37494248..37494260,-!p3@SMAD9!0.68!3.79!SMAD9;;chr13:45150455..45150472,-!p8@TSC22D1!0.68!3.79!TSC22D1;;chr14:69260437..69260442,-!p10@ZFP36L1!0.68!3.79!ZFP36L1;;chr14:75745523..75745537,+!p1@FOS!0.67!517.36!FOS;;chr2:121493425..121493474,+!p1@GLI2!0.67!8.83!GLI2;;chr3:178789622..178789633,-!p3@ZMAT3!0.67!7.57!ZMAT3;;chr5:88179518..88179569,-!p5@MEF2C!0.67!5.05!MEF2C;;chr6:28411241..28411284,-!p1@ZSCAN23!0.66!12.62!ZSCAN23;;chr13:74708029..74708077,-!p2@KLF12!0.66!11.36!KLF12;;chr19:56152332..56152347,+!p4@ZNF580!0.66!8.83!ZNF580;;chr19:47922750..47922795,-!p1@MEIS3!0.66!6.31!MEIS3;;chr10:114709999..114710031,+!p1@TCF7L2!0.65!95.90!TCF7L2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@@ Line 39: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.LQhCAGE/mesodermal%2520tumor%2520cell%2520line%253aHIRS-BM.CNhs12191.10696-109G3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.LQhCAGE/mesodermal%2520tumor%2520cell%2520line%253aHIRS-BM.CNhs12191.10696-109G3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.LQhCAGE/mesodermal%2520tumor%2520cell%2520line%253aHIRS-BM.CNhs12191.10696-109G3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.LQhCAGE/mesodermal%2520tumor%2520cell%2520line%253aHIRS-BM.CNhs12191.10696-109G3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.LQhCAGE/mesodermal%2520tumor%2520cell%2520line%253aHIRS-BM.CNhs12191.10696-109G3.hg38.nobarcode.ctss.bed.gz
 |id=FF:10696-109G3
 |is_a=CL:0000222;;EFO:0002091;;FF:0000003;;FF:0000210
 |is_obsolete=
-|library_ids=CNhs12191
+|library_id=CNhs12191
+|library_id_phase_based=2:CNhs12191
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10696
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10696
 |name=mesodermal tumor cell line:HIRS-BM
 |namespace=FANTOM5
@@ Line 48: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12191,LSID845,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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-}} {{DRAAccessionNumbers
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-|DRA_sample_Accession=CAGE@DRS007669
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 }}

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FF:10696-109G3: Difference between revisions

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Latest revision as of 14:33, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0