FF:10737-110B8: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005299 | |||
|accession_numbers=CAGE;DRX008012;DRR008884;DRZ000309;DRZ001694;DRZ011659;DRZ013044 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:1115,DOID:4235 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
| | |||
|fonse_cell_line=FF:10737-110B8 | |fonse_cell_line=FF:10737-110B8 | ||
|fonse_cell_line_closure=FF:10737-110B8 | |fonse_cell_line_closure=FF:10737-110B8 | ||
| Line 35: | Line 40: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/spindle%2520cell%2520sarcoma%2520cell%2520line%253aHs%2520132%252eT.CNhs11857.10737-110B8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/spindle%2520cell%2520sarcoma%2520cell%2520line%253aHs%2520132%252eT.CNhs11857.10737-110B8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/spindle%2520cell%2520sarcoma%2520cell%2520line%253aHs%2520132%252eT.CNhs11857.10737-110B8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/spindle%2520cell%2520sarcoma%2520cell%2520line%253aHs%2520132%252eT.CNhs11857.10737-110B8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/spindle%2520cell%2520sarcoma%2520cell%2520line%253aHs%2520132%252eT.CNhs11857.10737-110B8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10737-110B8 | |id=FF:10737-110B8 | ||
|is_a=DOID:4235;;EFO:0002091;;FF:0000003;;FF:0000210 | |is_a=DOID:4235;;EFO:0002091;;FF:0000003;;FF:0000210 | ||
|is_obsolete= | |||
|library_id=CNhs11857 | |||
|library_id_phase_based=2:CNhs11857 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10737 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10737 | |||
|name=spindle cell sarcoma cell line:Hs 132.T | |name=spindle cell sarcoma cell line:Hs 132.T | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11857,LSID830,release010,COMPLETED | |profile_hcage=CNhs11857,LSID830,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0921592236178905,0,0.156413214241604,-0.0410292521473645,0,0,0,0,0,0,0,0,0,0,0,0,0,0.249684894172021,0,0,0,0,0,0.207299442141663,0,0,-0.0647977833103667,0,0,0,0,0,0,0,0,0,0,0,0,0.34738361798312,0,0.0681588064684956,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.0681588064684956,0,0.0564402616925424,0,0.081921693373231,0,0,0.0815704274027392,0.0681588064684956,0,0,0,0,0,0,0,0.0681588064684956,0,0,0,0,0.127057551483127,0,0,0,0,0,0,0,0,0,0.0368750006031657,0.148705559492524,0,0,0,-0.0155064667243934,0.130299831447259,0,0.225233909259803,0,0,-0.0980353512377064,-0.0149407702587293,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0069165666145429,0.127057551483127,0,0,0.178914054615836,0.21611139978423,0,0,0,0.0120590411710346,0,0 | |||
|repeat_enrich_byname=0,0.0681588064684956,0,0.127057551483127,-0.0980353512377064,0,0,0,0,0,0,0,0,0.225233909259803,0,0,0.342632371688027,0,0.0546993517771568,-0.0164575910403448,0,0,0.00116962130982645,0,0,0,0,0.225233909259803,0,0,0.127057551483127,0,0.480265807394045,0,0.0177462548791807,0,0,0,0,0.110998061882228,0.622759349455701,0,0.0413651950743377,-0.000185454608872634,0,0,0,0,0.145041954715045,0,0.00617806768938645,0.0961938862924188,-0.0426975334869706,0.150866719568792,0.123201557834654,0,0,0.0340794032342478,0.200443974284535,0.0862778849134707,0,0,0.467765425346618,0.117122569938171,0,0,0.773134794718458,0,0.127436808592616,0.1092491460217,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227709919998197,-0.101754687419166,0,0,0,0,0.186628821441077,0,0,-0.373286155956567,0.0366385504479705,0.0194217815707327,0.131395428927887,0,-0.123475672394077,0.0192290508503114,-0.195404536936392,-0.0155064667243934,0.192941077507264,-0.0110676649340112,0,0.148705559492524,0.0960900839552954,0.090292794827456,0.152906094051681,0.0404247922448632,0.147718549085914,0.0128177270600065,0,0,0.0665186316669872,0.227684003379468,0.00648589396111365,0.0896988880526173,0.118270959869837,0.0884526363439823,0.214236587789754,0.053637815646256,-0.04384216270657,-0.174489163486692,-0.0395325284566706,0.112970320742671,0.0721492256270726,0.311246162294567,0.11783741979438,0.340342926878402,0.0436664660744418,-0.0550819418823778,0.106020138629414,-0.0657315887039751,0.061925060719063,0.221736679732967,0.110569793538468,0,0.0797996759355172,0.0608193076432464,0,0,0.366526235609016,0,0.0681588064684956,0.0681588064684956,0,0,-0.130645151252157,-0.108245630582471,-0.164696755087049,0,-0.0164773978097306,0.131267143051243,-0.127114616913385,0,-0.200635901154826,0.0275813726541105,0.0440644069634741,-0.129196817603103,0.0208146694635522,0.041533159262776,0.175915689956212,0.0764177020051455,0.0353657536347158,-0.0584468268118252,0.100598995762226,0.100347901710478,0.026313522081606,0.650529095448013,-0.0142692268181686,0.0389307190078394,0.0681588064684956,0.761498939243176,-0.0532999672150786,0.0370263353032605,0.146455593118841,0.0681588064684956,0.147823594464372,0,0.14310921090396,0,-0.146118714943719,0.379003449765255,-0.134032036170966,-0.00190848179904712,0,0.132967296871882,0.247529801717236,0.0681588064684956,0.0155469287975767,0,0,-0.0822082768661438,0.133374963025375,-0.177571024630341,0.151971522888948,0,0.430898119917774,0,0,0.246926370970922,-0.235476037764389,0,-0.100855731286558,-0.0193916672398043,0.115792504195265,0.0629429811809021,0,0,0.0600138035512224,0,0,-0.537769257349535,0.0681588064684956,0.140485260100634,-0.0744122868709196,0,0.174165608614847,0,0,-0.177527765965176,0.0681588064684956,0.255757533252412,0,0,-0.0822588086319746,0.157154421117273,0,0.0340794032342478,0,0.112616954629901,0,0,0,0,0,0,0.0446908322725037,0.0542242663551313,0.365175215174112,0.127057551483127,0.155400796279632,0,0,0,0,0.0681588064684956,-0.0426442746617796,0,0,0.897975760306232,0,-0.12301741567642,0,0,0,0,0.124619524324927,-0.135077755626228,0.0681588064684956,-0.131862706497632,0,0.0340794032342478,0,0,-0.0179821833207158,0,0,0.0340794032342478,0,0.069327094429463,-0.0667030572874563,0,0,0,-0.0980403469859543,0,0,0.0681588064684956,0.0292417966778005,0.0799407355273059,0,0.0678070128448374,0.204936555913984,0,-0.0218342801908726,-0.0815818795468414,0,0.0063786592309675,0.187296378359816,0.121724902019971,0,0.0681588064684956,-0.261347131789888,0,0.0926738361791725,-0.0283644836827355,0,0.0681588064684956,0.0555195402578299,0,0,0,0,0,0,0.0109193968600472,0.0635287757415635,0,0,0,0,0,0,0,0,0,0,0.0125928159684405,0.133009852601292,0.127057551483127,0,0,0,0,0,0,0.0394227526626605,-0.235167900285203,0.0340794032342478,0,0,0,0,0.0681588064684956,0.0120590411710346,0,-0.0136653806367888,0,0,0,0,0,0.081921693373231,0,0,0,0,-0.082058504294729,0,0,0.365946640049786,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.130702551513252,0,0,0,0,0,0,0,0.156413214241604,0,0,0,0,-0.0457255672404816,0,0,0,0.0222611666939706,0,-0.0921592236178905,0,0,0,0,0,0.0310981441095402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.727915379821924,0.0536235755004589,0.262887068501794,0.0557111900420507,0,0,0.227090247986206,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0.0340794032342478,0,0,0,0,0,0,0,0,0,0.127057551483127,0,0,0,0,0,0.089457027307918,-0.0272885242506671,0,0,0,0,0.127057551483127,0,0,0.207299442141663,0,0,-0.0920328098005262,0,0,0,0,0,0,0.273531384298795,0.369864842741012,0.0704451710220982,0,0,0,0.174494707030771,0.0681588064684956,0,0.0439223260783383,0,0.364469125028794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.249684894172021,0,0,0,0,0,0,0,0,0,0,0,0,0.133543084732601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0681588064684956,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0.127057551483127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0118596618001428,0,0,0,0.0921711087526769,0,0,0,0,0,0,0.0681588064684956,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354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| |||
|rna_box=110 | |rna_box=110 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 77: | ||
|rna_weight_ug=42.1026 | |rna_weight_ug=42.1026 | ||
|sample_age=49 | |sample_age=49 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=CRL-7085 | |sample_cell_catalog=CRL-7085 | ||
|sample_cell_line=Hs 132.T | |sample_cell_line=Hs 132.T | ||
| Line 69: | Line 90: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.83185547970867e-219!GO:0005737;cytoplasm;4.88939900217783e-176!GO:0043226;organelle;2.78581415487453e-174!GO:0043229;intracellular organelle;5.82239615257983e-174!GO:0043231;intracellular membrane-bound organelle;5.29862639563017e-168!GO:0043227;membrane-bound organelle;1.06298045066303e-167!GO:0044422;organelle part;2.08293515849873e-127!GO:0044446;intracellular organelle part;4.18430891715247e-126!GO:0044444;cytoplasmic part;7.96905905582675e-120!GO:0005515;protein binding;1.01792874150408e-86!GO:0032991;macromolecular complex;2.98115100122102e-86!GO:0044238;primary metabolic process;6.22617379255452e-79!GO:0043170;macromolecule metabolic process;6.02571453092958e-78!GO:0044237;cellular metabolic process;4.49099716101749e-77!GO:0030529;ribonucleoprotein complex;3.50719763193286e-71!GO:0005634;nucleus;4.87447459720999e-66!GO:0043233;organelle lumen;4.59405456935307e-61!GO:0031974;membrane-enclosed lumen;4.59405456935307e-61!GO:0044428;nuclear part;2.0804912819768e-60!GO:0003723;RNA binding;9.37550178466253e-57!GO:0016043;cellular component organization and biogenesis;6.31746628841125e-54!GO:0005739;mitochondrion;6.03907745784628e-50!GO:0019538;protein metabolic process;1.22888600604374e-49!GO:0031090;organelle membrane;2.9934207049045e-46!GO:0043234;protein complex;1.41358309887005e-44!GO:0044260;cellular macromolecule metabolic process;5.50690992083305e-44!GO:0006412;translation;5.50690992083305e-44!GO:0005840;ribosome;1.11142304066169e-43!GO:0044267;cellular protein metabolic process;5.34378628004704e-43!GO:0043283;biopolymer metabolic process;1.34577172337877e-42!GO:0015031;protein transport;1.37904222538092e-42!GO:0033036;macromolecule localization;2.39619569210106e-41!GO:0003735;structural constituent of ribosome;7.69054070619039e-39!GO:0045184;establishment of protein localization;9.87606059698376e-39!GO:0008104;protein localization;2.43378801138143e-38!GO:0031981;nuclear lumen;5.71637738248494e-37!GO:0006396;RNA processing;1.96555899707166e-36!GO:0046907;intracellular transport;5.87888278719844e-36!GO:0005829;cytosol;9.08331092372492e-36!GO:0010467;gene expression;3.98044417877706e-35!GO:0044429;mitochondrial part;8.66816943226323e-35!GO:0009059;macromolecule biosynthetic process;2.09219670443577e-34!GO:0033279;ribosomal subunit;5.79137252219808e-34!GO:0009058;biosynthetic process;8.48946861891955e-34!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.65417270365425e-33!GO:0044249;cellular biosynthetic process;1.05579164803712e-32!GO:0031967;organelle envelope;1.12204247299309e-32!GO:0006996;organelle organization and biogenesis;1.1972892407471e-32!GO:0031975;envelope;1.78500870300142e-32!GO:0043228;non-membrane-bound organelle;6.65659045759291e-32!GO:0043232;intracellular non-membrane-bound organelle;6.65659045759291e-32!GO:0016071;mRNA metabolic process;4.59503876783176e-31!GO:0065003;macromolecular complex assembly;7.38312503257515e-30!GO:0006886;intracellular protein transport;1.44038880431531e-28!GO:0022607;cellular component assembly;1.52488673951971e-28!GO:0008380;RNA splicing;3.72384859582156e-28!GO:0006397;mRNA processing;2.54010620382211e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.93265683925932e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.57269223705148e-26!GO:0006259;DNA metabolic process;1.91746514283632e-25!GO:0005654;nucleoplasm;2.16450966123014e-23!GO:0005740;mitochondrial envelope;3.01669802223846e-23!GO:0051641;cellular localization;1.01697687040246e-22!GO:0051649;establishment of cellular localization;1.1032113687079e-22!GO:0031966;mitochondrial membrane;5.80406167072104e-22!GO:0000166;nucleotide binding;1.48417055447953e-21!GO:0019866;organelle inner membrane;3.94045177017447e-21!GO:0007049;cell cycle;1.50294552330268e-20!GO:0044445;cytosolic part;1.96093061526618e-20!GO:0005681;spliceosome;4.22443886508475e-20!GO:0012505;endomembrane system;5.62415529150219e-20!GO:0006457;protein folding;1.37994848315889e-19!GO:0005743;mitochondrial inner membrane;1.37994848315889e-19!GO:0016462;pyrophosphatase activity;2.10153192891183e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.7797814542927e-19!GO:0044451;nucleoplasm part;3.39414811935026e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;4.73464924618623e-19!GO:0017111;nucleoside-triphosphatase activity;4.9146867649853e-19!GO:0006119;oxidative phosphorylation;5.14488085707866e-19!GO:0005794;Golgi apparatus;9.12148982274199e-19!GO:0005783;endoplasmic reticulum;2.39989184737776e-18!GO:0003676;nucleic acid binding;5.53568034917255e-18!GO:0015934;large ribosomal subunit;6.85563476567305e-18!GO:0044455;mitochondrial membrane part;8.13692650645693e-18!GO:0022618;protein-RNA complex assembly;2.94264312128171e-17!GO:0008134;transcription factor binding;3.37230698745957e-17!GO:0048770;pigment granule;3.7365141612438e-17!GO:0042470;melanosome;3.7365141612438e-17!GO:0015935;small ribosomal subunit;4.87209465431608e-17!GO:0048193;Golgi vesicle transport;2.11616934935573e-16!GO:0006512;ubiquitin cycle;3.63613083544753e-16!GO:0032553;ribonucleotide binding;6.16152644993216e-16!GO:0032555;purine ribonucleotide binding;6.16152644993216e-16!GO:0016874;ligase activity;1.59265506446741e-15!GO:0017076;purine nucleotide binding;1.61601054438351e-15!GO:0044432;endoplasmic reticulum part;2.78229766440662e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;3.61280704564757e-15!GO:0005746;mitochondrial respiratory chain;4.82286465200839e-15!GO:0019941;modification-dependent protein catabolic process;7.22711555207601e-15!GO:0043632;modification-dependent macromolecule catabolic process;7.22711555207601e-15!GO:0016070;RNA metabolic process;7.22711555207601e-15!GO:0044265;cellular macromolecule catabolic process;7.65802717351306e-15!GO:0006511;ubiquitin-dependent protein catabolic process;8.7544903277428e-15!GO:0044257;cellular protein catabolic process;1.00366764362094e-14!GO:0022402;cell cycle process;1.22704756882468e-14!GO:0006605;protein targeting;1.2481583119923e-14!GO:0043285;biopolymer catabolic process;1.64869036688378e-14!GO:0043412;biopolymer modification;2.69083962798547e-14!GO:0005730;nucleolus;3.89902689488478e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.98187199323862e-14!GO:0008135;translation factor activity, nucleic acid binding;4.16894341490062e-14!GO:0051082;unfolded protein binding;5.86426655780283e-14!GO:0031980;mitochondrial lumen;6.27367148926225e-14!GO:0005759;mitochondrial matrix;6.27367148926225e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.26420679517793e-13!GO:0003954;NADH dehydrogenase activity;1.26420679517793e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.26420679517793e-13!GO:0005524;ATP binding;2.14351847097776e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.5995719041888e-13!GO:0000278;mitotic cell cycle;2.74669810589429e-13!GO:0016192;vesicle-mediated transport;2.91109693370183e-13!GO:0006974;response to DNA damage stimulus;3.07788724147742e-13!GO:0032559;adenyl ribonucleotide binding;3.94233715546344e-13!GO:0000502;proteasome complex (sensu Eukaryota);4.27947261663537e-13!GO:0009057;macromolecule catabolic process;4.33209512719749e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.15030563334047e-13!GO:0030163;protein catabolic process;5.31582459107055e-13!GO:0006464;protein modification process;5.68570557569105e-13!GO:0030554;adenyl nucleotide binding;1.47041245696265e-12!GO:0048523;negative regulation of cellular process;2.19354385610091e-12!GO:0051186;cofactor metabolic process;2.20394108654483e-12!GO:0005793;ER-Golgi intermediate compartment;1.07505448968192e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.18179340588312e-11!GO:0045271;respiratory chain complex I;1.18179340588312e-11!GO:0005747;mitochondrial respiratory chain complex I;1.18179340588312e-11!GO:0005761;mitochondrial ribosome;1.28095167477061e-11!GO:0000313;organellar ribosome;1.28095167477061e-11!GO:0012501;programmed cell death;1.36681966471214e-11!GO:0042775;organelle ATP synthesis coupled electron transport;1.45965299146984e-11!GO:0042773;ATP synthesis coupled electron transport;1.45965299146984e-11!GO:0043687;post-translational protein modification;2.11987197606959e-11!GO:0005694;chromosome;2.25512062957578e-11!GO:0003743;translation initiation factor activity;2.64851085797308e-11!GO:0003712;transcription cofactor activity;2.68197867871843e-11!GO:0006413;translational initiation;2.94194751819154e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.94438324569646e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.436308082216e-11!GO:0006915;apoptosis;3.64162142318609e-11!GO:0044248;cellular catabolic process;5.20102071404759e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;8.81003382684632e-11!GO:0000375;RNA splicing, via transesterification reactions;8.81003382684632e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.81003382684632e-11!GO:0006913;nucleocytoplasmic transport;1.14764491559706e-10!GO:0006260;DNA replication;1.24916583856908e-10!GO:0048519;negative regulation of biological process;1.29319851883466e-10!GO:0006281;DNA repair;1.39309082300427e-10!GO:0051276;chromosome organization and biogenesis;1.51500029049682e-10!GO:0008219;cell death;1.61455755739843e-10!GO:0016265;death;1.61455755739843e-10!GO:0008639;small protein conjugating enzyme activity;1.68589004931437e-10!GO:0009055;electron carrier activity;1.68589004931437e-10!GO:0006366;transcription from RNA polymerase II promoter;2.00513595161813e-10!GO:0051169;nuclear transport;2.22289411829916e-10!GO:0009719;response to endogenous stimulus;2.41747856534397e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.6431340887964e-10!GO:0044427;chromosomal part;2.86704210761425e-10!GO:0005635;nuclear envelope;3.17836056878692e-10!GO:0004842;ubiquitin-protein ligase activity;3.42108680644734e-10!GO:0016887;ATPase activity;4.89287735597778e-10!GO:0019787;small conjugating protein ligase activity;5.57846361493162e-10!GO:0031965;nuclear membrane;6.13985559230897e-10!GO:0006446;regulation of translational initiation;6.18864203411798e-10!GO:0042623;ATPase activity, coupled;7.09924729380492e-10!GO:0044453;nuclear membrane part;7.79296790746035e-10!GO:0050794;regulation of cellular process;8.1298765241971e-10!GO:0016604;nuclear body;8.30462749104403e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;8.4128670434631e-10!GO:0005789;endoplasmic reticulum membrane;8.80826202807343e-10!GO:0022403;cell cycle phase;9.89173133725179e-10!GO:0042254;ribosome biogenesis and assembly;1.21177379415629e-09!GO:0006732;coenzyme metabolic process;1.52919754354586e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.93300734071393e-09!GO:0006323;DNA packaging;3.28919993698231e-09!GO:0009259;ribonucleotide metabolic process;3.3099756272762e-09!GO:0044431;Golgi apparatus part;3.93797020596326e-09!GO:0051726;regulation of cell cycle;4.29515327877663e-09!GO:0000074;regulation of progression through cell cycle;6.17067110633363e-09!GO:0030120;vesicle coat;8.42377793318998e-09!GO:0030662;coated vesicle membrane;8.42377793318998e-09!GO:0016881;acid-amino acid ligase activity;9.3815531428064e-09!GO:0008565;protein transporter activity;9.4339268981525e-09!GO:0006461;protein complex assembly;1.202869440822e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.27570756435323e-08!GO:0005788;endoplasmic reticulum lumen;1.35011928836715e-08!GO:0000087;M phase of mitotic cell cycle;1.63772304773145e-08!GO:0031324;negative regulation of cellular metabolic process;1.66668449820832e-08!GO:0006163;purine nucleotide metabolic process;1.78616591154496e-08!GO:0003714;transcription corepressor activity;1.78632338337888e-08!GO:0009150;purine ribonucleotide metabolic process;1.92737976716674e-08!GO:0005768;endosome;1.96231848603066e-08!GO:0007067;mitosis;2.21180677040165e-08!GO:0051301;cell division;2.28637798680961e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.40142937459737e-08!GO:0009260;ribonucleotide biosynthetic process;3.01407508104245e-08!GO:0017038;protein import;3.26415824481697e-08!GO:0004386;helicase activity;3.6602898882476e-08!GO:0006164;purine nucleotide biosynthetic process;5.9367020140264e-08!GO:0009152;purine ribonucleotide biosynthetic process;6.1395039171419e-08!GO:0005643;nuclear pore;6.64111110074969e-08!GO:0051246;regulation of protein metabolic process;8.22400257147567e-08!GO:0065002;intracellular protein transport across a membrane;8.84853437159095e-08!GO:0016607;nuclear speck;9.38034881180303e-08!GO:0009199;ribonucleoside triphosphate metabolic process;9.45651900841125e-08!GO:0016564;transcription repressor activity;1.01421791246078e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.07907723350166e-07!GO:0006333;chromatin assembly or disassembly;1.21688158870747e-07!GO:0065004;protein-DNA complex assembly;1.25489041998419e-07!GO:0009141;nucleoside triphosphate metabolic process;1.52234378586676e-07!GO:0008361;regulation of cell size;1.69070254648635e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.76498206927145e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.76498206927145e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.76498206927145e-07!GO:0008026;ATP-dependent helicase activity;2.0667432699634e-07!GO:0003924;GTPase activity;2.07375893635712e-07!GO:0009892;negative regulation of metabolic process;2.13707438489706e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.23465940603394e-07!GO:0009144;purine nucleoside triphosphate metabolic process;2.23465940603394e-07!GO:0006399;tRNA metabolic process;2.38938130642787e-07!GO:0000785;chromatin;2.52981522991768e-07!GO:0016049;cell growth;2.64808048931523e-07!GO:0043069;negative regulation of programmed cell death;2.88855013590408e-07!GO:0043038;amino acid activation;3.17066872836721e-07!GO:0006418;tRNA aminoacylation for protein translation;3.17066872836721e-07!GO:0043039;tRNA aminoacylation;3.17066872836721e-07!GO:0030036;actin cytoskeleton organization and biogenesis;3.18718678544754e-07!GO:0048475;coated membrane;3.39957036018319e-07!GO:0030117;membrane coat;3.39957036018319e-07!GO:0043067;regulation of programmed cell death;3.65929155880659e-07!GO:0050789;regulation of biological process;3.68132934478576e-07!GO:0042981;regulation of apoptosis;4.7157203573581e-07!GO:0009142;nucleoside triphosphate biosynthetic process;5.8466650140035e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.8466650140035e-07!GO:0015986;ATP synthesis coupled proton transport;5.87164452554864e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.87164452554864e-07!GO:0005798;Golgi-associated vesicle;5.88882493798851e-07!GO:0000139;Golgi membrane;6.05168009386145e-07!GO:0007010;cytoskeleton organization and biogenesis;6.20692122589981e-07!GO:0006793;phosphorus metabolic process;6.32193811504849e-07!GO:0006796;phosphate metabolic process;6.32193811504849e-07!GO:0006916;anti-apoptosis;6.33897281554043e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.75530382050404e-07!GO:0043066;negative regulation of apoptosis;6.7696015825316e-07!GO:0003697;single-stranded DNA binding;7.41321864766532e-07!GO:0015630;microtubule cytoskeleton;7.7982907316959e-07!GO:0046930;pore complex;7.90535744574405e-07!GO:0043566;structure-specific DNA binding;8.66590913937731e-07!GO:0015078;hydrogen ion transmembrane transporter activity;8.70871242836332e-07!GO:0019829;cation-transporting ATPase activity;8.76731269317722e-07!GO:0009060;aerobic respiration;8.8014657969852e-07!GO:0006403;RNA localization;9.06701463924401e-07!GO:0046034;ATP metabolic process;9.45449072429236e-07!GO:0032446;protein modification by small protein conjugation;9.6494586654182e-07!GO:0050657;nucleic acid transport;9.6494586654182e-07!GO:0051236;establishment of RNA localization;9.6494586654182e-07!GO:0050658;RNA transport;9.6494586654182e-07!GO:0000151;ubiquitin ligase complex;1.21962705890052e-06!GO:0000279;M phase;1.24353133550895e-06!GO:0005667;transcription factor complex;1.32118328388942e-06!GO:0016567;protein ubiquitination;1.36645290380359e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.36948016964398e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.36948016964398e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.40537679485554e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.64975058693632e-06!GO:0031988;membrane-bound vesicle;1.77089195230763e-06!GO:0001558;regulation of cell growth;2.04329016656217e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.08286616715316e-06!GO:0009056;catabolic process;2.46377884388504e-06!GO:0051188;cofactor biosynthetic process;3.01228345485593e-06!GO:0006334;nucleosome assembly;3.28645172941684e-06!GO:0030029;actin filament-based process;3.33697344725428e-06!GO:0016310;phosphorylation;4.12493527016923e-06!GO:0045333;cellular respiration;4.15310130289151e-06!GO:0051170;nuclear import;4.30103289953938e-06!GO:0006364;rRNA processing;4.40571406514291e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.49566309345134e-06!GO:0016469;proton-transporting two-sector ATPase complex;5.38946289973206e-06!GO:0031252;leading edge;5.54043116530002e-06!GO:0006754;ATP biosynthetic process;5.54043116530002e-06!GO:0006753;nucleoside phosphate metabolic process;5.54043116530002e-06!GO:0006606;protein import into nucleus;5.82687847478533e-06!GO:0016481;negative regulation of transcription;5.82687847478533e-06!GO:0008092;cytoskeletal protein binding;6.66891856631383e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;7.66368819283749e-06!GO:0007005;mitochondrion organization and biogenesis;8.33473949668989e-06!GO:0031497;chromatin assembly;8.48902571349015e-06!GO:0016072;rRNA metabolic process;8.88629560648125e-06!GO:0000245;spliceosome assembly;8.97315225825153e-06!GO:0044440;endosomal part;8.97665579305861e-06!GO:0010008;endosome membrane;8.97665579305861e-06!GO:0031982;vesicle;1.00048465805994e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.01664460524036e-05!GO:0045259;proton-transporting ATP synthase complex;1.03059290627456e-05!GO:0031410;cytoplasmic vesicle;1.06967759318353e-05!GO:0005813;centrosome;1.23215975904811e-05!GO:0051187;cofactor catabolic process;1.54751764990648e-05!GO:0016740;transferase activity;1.62766398041616e-05!GO:0051789;response to protein stimulus;1.73334508325217e-05!GO:0006986;response to unfolded protein;1.73334508325217e-05!GO:0006613;cotranslational protein targeting to membrane;1.83214045481265e-05!GO:0006099;tricarboxylic acid cycle;1.89446986312663e-05!GO:0046356;acetyl-CoA catabolic process;1.89446986312663e-05!GO:0016568;chromatin modification;2.10666032047208e-05!GO:0051325;interphase;2.1911721452611e-05!GO:0051028;mRNA transport;2.20309927552478e-05!GO:0051329;interphase of mitotic cell cycle;2.28578366795767e-05!GO:0009117;nucleotide metabolic process;2.59507462158918e-05!GO:0005769;early endosome;2.63756440329584e-05!GO:0009109;coenzyme catabolic process;2.66469027463413e-05!GO:0005815;microtubule organizing center;2.86635049685654e-05!GO:0043623;cellular protein complex assembly;2.90340664836869e-05!GO:0016787;hydrolase activity;2.94869092678182e-05!GO:0016563;transcription activator activity;3.14712282208036e-05!GO:0005770;late endosome;3.16975452938911e-05!GO:0006752;group transfer coenzyme metabolic process;3.52975339832531e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.56232364834381e-05!GO:0005819;spindle;3.68919294267282e-05!GO:0045786;negative regulation of progression through cell cycle;3.98622055486016e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.07075900990828e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.11787223303564e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.20625853823344e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.3785870416878e-05!GO:0030133;transport vesicle;4.51584852022029e-05!GO:0006084;acetyl-CoA metabolic process;4.71757444417896e-05!GO:0005525;GTP binding;5.22674021694703e-05!GO:0016859;cis-trans isomerase activity;5.44797916421813e-05!GO:0030867;rough endoplasmic reticulum membrane;5.96975265453054e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;6.049735391992e-05!GO:0045454;cell redox homeostasis;6.16147264144928e-05!GO:0005773;vacuole;6.16147264144928e-05!GO:0019222;regulation of metabolic process;6.40995314504494e-05!GO:0016853;isomerase activity;6.40995314504494e-05!GO:0006261;DNA-dependent DNA replication;6.66526382257642e-05!GO:0016491;oxidoreductase activity;6.97552464204678e-05!GO:0005762;mitochondrial large ribosomal subunit;7.01929877555454e-05!GO:0000315;organellar large ribosomal subunit;7.01929877555454e-05!GO:0009108;coenzyme biosynthetic process;7.12925046445542e-05!GO:0005905;coated pit;8.10998433435876e-05!GO:0005839;proteasome core complex (sensu Eukaryota);8.33521918576734e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;9.04969335318981e-05!GO:0040008;regulation of growth;0.000114223640430568!GO:0015980;energy derivation by oxidation of organic compounds;0.000176731775780359!GO:0019867;outer membrane;0.000185203980704188!GO:0031968;organelle outer membrane;0.000214554295902724!GO:0019843;rRNA binding;0.000235734337266928!GO:0003724;RNA helicase activity;0.000248698996003428!GO:0048522;positive regulation of cellular process;0.000250521698439001!GO:0008654;phospholipid biosynthetic process;0.000257646393240231!GO:0030663;COPI coated vesicle membrane;0.000264090633132949!GO:0030126;COPI vesicle coat;0.000264090633132949!GO:0033116;ER-Golgi intermediate compartment membrane;0.000279463963086003!GO:0003713;transcription coactivator activity;0.000282857402878267!GO:0032561;guanyl ribonucleotide binding;0.000287377571442518!GO:0019001;guanyl nucleotide binding;0.000287377571442518!GO:0051168;nuclear export;0.000287911135849721!GO:0005885;Arp2/3 protein complex;0.000293518816682039!GO:0065007;biological regulation;0.000311730154328581!GO:0043021;ribonucleoprotein binding;0.000332229863563586!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000352853737239279!GO:0005048;signal sequence binding;0.000365871850919826!GO:0000323;lytic vacuole;0.000401831712023343!GO:0005764;lysosome;0.000401831712023343!GO:0004298;threonine endopeptidase activity;0.000411301509237108!GO:0019899;enzyme binding;0.000411301509237108!GO:0000075;cell cycle checkpoint;0.000416283850033141!GO:0008250;oligosaccharyl transferase complex;0.000419932808175185!GO:0030137;COPI-coated vesicle;0.000458111087403407!GO:0004576;oligosaccharyl transferase activity;0.000511665943343041!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00052459205352329!GO:0005741;mitochondrial outer membrane;0.000575996142479527!GO:0016779;nucleotidyltransferase activity;0.000581023085016432!GO:0007264;small GTPase mediated signal transduction;0.000586918514211465!GO:0007243;protein kinase cascade;0.000586918514211465!GO:0044262;cellular carbohydrate metabolic process;0.000597889419897202!GO:0051427;hormone receptor binding;0.000652137611147144!GO:0031072;heat shock protein binding;0.00070918230049871!GO:0016044;membrane organization and biogenesis;0.00082082233520017!GO:0006892;post-Golgi vesicle-mediated transport;0.000830876933047305!GO:0051052;regulation of DNA metabolic process;0.000839940297000704!GO:0051252;regulation of RNA metabolic process;0.000842099642464965!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000880828950125803!GO:0006891;intra-Golgi vesicle-mediated transport;0.000932835843601842!GO:0045892;negative regulation of transcription, DNA-dependent;0.000961920954826685!GO:0030658;transport vesicle membrane;0.00102857490933706!GO:0006612;protein targeting to membrane;0.00105112792463388!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00119795729852724!GO:0035257;nuclear hormone receptor binding;0.00122039675370429!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00122810488331679!GO:0030132;clathrin coat of coated pit;0.00123552254194131!GO:0018196;peptidyl-asparagine modification;0.00123714086758066!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00123714086758066!GO:0005791;rough endoplasmic reticulum;0.00124068218641309!GO:0003682;chromatin binding;0.00134260666662157!GO:0051920;peroxiredoxin activity;0.00139907401171145!GO:0003729;mRNA binding;0.00154088684692415!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00158163132630279!GO:0000314;organellar small ribosomal subunit;0.00158163132630279!GO:0005763;mitochondrial small ribosomal subunit;0.00158163132630279!GO:0048468;cell development;0.00158805352808657!GO:0006091;generation of precursor metabolites and energy;0.00162164833497098!GO:0005657;replication fork;0.00165650925234994!GO:0048471;perinuclear region of cytoplasm;0.00176762569216811!GO:0008094;DNA-dependent ATPase activity;0.00176985974708768!GO:0003899;DNA-directed RNA polymerase activity;0.00177681910094139!GO:0003779;actin binding;0.00177681910094139!GO:0016197;endosome transport;0.001798517515936!GO:0030134;ER to Golgi transport vesicle;0.00180949915676861!GO:0003690;double-stranded DNA binding;0.00192401726798704!GO:0043284;biopolymer biosynthetic process;0.0021193029025233!GO:0007051;spindle organization and biogenesis;0.00216320454494743!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00219408148034292!GO:0045045;secretory pathway;0.00221163938954946!GO:0000059;protein import into nucleus, docking;0.00221899373543459!GO:0006302;double-strand break repair;0.00232932418248062!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00246441954499915!GO:0015399;primary active transmembrane transporter activity;0.00246441954499915!GO:0048500;signal recognition particle;0.00249992931426303!GO:0030660;Golgi-associated vesicle membrane;0.00261136482967122!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00262637336440427!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00262637336440427!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00262637336440427!GO:0006626;protein targeting to mitochondrion;0.00270627755428446!GO:0000082;G1/S transition of mitotic cell cycle;0.00273357175482381!GO:0030127;COPII vesicle coat;0.00274221258415233!GO:0012507;ER to Golgi transport vesicle membrane;0.00274221258415233!GO:0051128;regulation of cellular component organization and biogenesis;0.0027643788541338!GO:0015631;tubulin binding;0.0027643788541338!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00284088841388652!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00294659014136641!GO:0048487;beta-tubulin binding;0.00298513031117482!GO:0004674;protein serine/threonine kinase activity;0.00324494500563557!GO:0006839;mitochondrial transport;0.00355822854279048!GO:0017166;vinculin binding;0.00356332920672849!GO:0004177;aminopeptidase activity;0.00356474698911219!GO:0008022;protein C-terminus binding;0.00356820049846689!GO:0000775;chromosome, pericentric region;0.00356832810575667!GO:0043681;protein import into mitochondrion;0.0036725563619466!GO:0030176;integral to endoplasmic reticulum membrane;0.00377002960862506!GO:0006402;mRNA catabolic process;0.0038479501809474!GO:0000786;nucleosome;0.00386018720469593!GO:0031543;peptidyl-proline dioxygenase activity;0.00390438421761243!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00402907470322511!GO:0008186;RNA-dependent ATPase activity;0.00404938796901514!GO:0008047;enzyme activator activity;0.00415828575239055!GO:0065009;regulation of a molecular function;0.0041859957416538!GO:0030659;cytoplasmic vesicle membrane;0.00435362338782958!GO:0043488;regulation of mRNA stability;0.00435362338782958!GO:0043487;regulation of RNA stability;0.00435362338782958!GO:0046474;glycerophospholipid biosynthetic process;0.00456704537225564!GO:0030027;lamellipodium;0.00458263193406406!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.004860585601396!GO:0009165;nucleotide biosynthetic process;0.00494982770760856!GO:0006383;transcription from RNA polymerase III promoter;0.005071451741477!GO:0003684;damaged DNA binding;0.005071451741477!GO:0006414;translational elongation;0.00549949131019038!GO:0031323;regulation of cellular metabolic process;0.00566504116202664!GO:0019798;procollagen-proline dioxygenase activity;0.00566793298997939!GO:0008139;nuclear localization sequence binding;0.00580054115963702!GO:0006509;membrane protein ectodomain proteolysis;0.0058626131861003!GO:0033619;membrane protein proteolysis;0.0058626131861003!GO:0007050;cell cycle arrest;0.006211120921283!GO:0001726;ruffle;0.00647763598855214!GO:0045941;positive regulation of transcription;0.00672539833805437!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00684533376842158!GO:0045047;protein targeting to ER;0.00684533376842158!GO:0016363;nuclear matrix;0.0070982465876177!GO:0007030;Golgi organization and biogenesis;0.00783372198215162!GO:0031418;L-ascorbic acid binding;0.00800390364065785!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0080367008413491!GO:0003678;DNA helicase activity;0.00824846163097761!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00852189386218843!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00852189386218843!GO:0007006;mitochondrial membrane organization and biogenesis;0.00858764360732201!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00866131145791129!GO:0008312;7S RNA binding;0.00912422893388866!GO:0048518;positive regulation of biological process;0.00912422893388866!GO:0006611;protein export from nucleus;0.00913547975932795!GO:0042802;identical protein binding;0.00930605063270549!GO:0043433;negative regulation of transcription factor activity;0.00931062662110262!GO:0030880;RNA polymerase complex;0.0093175233696502!GO:0045792;negative regulation of cell size;0.00939021675695322!GO:0031901;early endosome membrane;0.00939605033380548!GO:0005874;microtubule;0.00939605033380548!GO:0005684;U2-dependent spliceosome;0.0096838945106552!GO:0030118;clathrin coat;0.0096838945106552!GO:0008154;actin polymerization and/or depolymerization;0.0096974392509043!GO:0000049;tRNA binding;0.0096974392509043!GO:0006595;polyamine metabolic process;0.00970273129820204!GO:0004004;ATP-dependent RNA helicase activity;0.00970273129820204!GO:0006275;regulation of DNA replication;0.00983514092698862!GO:0005869;dynactin complex;0.00995007489531705!GO:0000776;kinetochore;0.0101176250350536!GO:0030308;negative regulation of cell growth;0.0106386326963023!GO:0030521;androgen receptor signaling pathway;0.0107334304223656!GO:0045893;positive regulation of transcription, DNA-dependent;0.0107452559772856!GO:0030833;regulation of actin filament polymerization;0.0108259806625107!GO:0006354;RNA elongation;0.0108273901679643!GO:0051101;regulation of DNA binding;0.0111595199595183!GO:0005801;cis-Golgi network;0.011289457141327!GO:0003746;translation elongation factor activity;0.011623881793613!GO:0046483;heterocycle metabolic process;0.0117782871278173!GO:0030125;clathrin vesicle coat;0.0117856139397222!GO:0030665;clathrin coated vesicle membrane;0.0117856139397222!GO:0005862;muscle thin filament tropomyosin;0.011832077538646!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0119440161085762!GO:0015002;heme-copper terminal oxidase activity;0.0119440161085762!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0119440161085762!GO:0004129;cytochrome-c oxidase activity;0.0119440161085762!GO:0019206;nucleoside kinase activity;0.0120026434816708!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0120400304679415!GO:0032508;DNA duplex unwinding;0.0120538883849822!GO:0032392;DNA geometric change;0.0120538883849822!GO:0005583;fibrillar collagen;0.0127917765641432!GO:0006401;RNA catabolic process;0.0129299884735546!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0129304220196348!GO:0046489;phosphoinositide biosynthetic process;0.0132100819207599!GO:0043492;ATPase activity, coupled to movement of substances;0.0132214006229835!GO:0051087;chaperone binding;0.0132214006229835!GO:0022890;inorganic cation transmembrane transporter activity;0.0135414986101053!GO:0033673;negative regulation of kinase activity;0.0138363505422187!GO:0006469;negative regulation of protein kinase activity;0.0138363505422187!GO:0001527;microfibril;0.0140241786958689!GO:0030041;actin filament polymerization;0.0141257083970819!GO:0005096;GTPase activator activity;0.0141835859001266!GO:0006650;glycerophospholipid metabolic process;0.014341166472254!GO:0006740;NADPH regeneration;0.0144568370201511!GO:0006098;pentose-phosphate shunt;0.0144568370201511!GO:0044433;cytoplasmic vesicle part;0.0145816565784974!GO:0035258;steroid hormone receptor binding;0.0147853283361088!GO:0007052;mitotic spindle organization and biogenesis;0.0158866743617476!GO:0006268;DNA unwinding during replication;0.0162678530814039!GO:0005100;Rho GTPase activator activity;0.0164855076106517!GO:0006607;NLS-bearing substrate import into nucleus;0.016549795031885!GO:0031902;late endosome membrane;0.0167393028099133!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0167953087918944!GO:0033043;regulation of organelle organization and biogenesis;0.0167953087918944!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0169402050662562!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0171967700645207!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0172104079730441!GO:0000339;RNA cap binding;0.0178868980289187!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0178956390087422!GO:0000428;DNA-directed RNA polymerase complex;0.0178956390087422!GO:0006950;response to stress;0.018009025126643!GO:0009112;nucleobase metabolic process;0.0182644825326224!GO:0000792;heterochromatin;0.0185395455997347!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0188253179485833!GO:0031124;mRNA 3'-end processing;0.0188379997006003!GO:0005637;nuclear inner membrane;0.0191303176294694!GO:0008180;signalosome;0.0191519092912956!GO:0016272;prefoldin complex;0.0191988599248943!GO:0005520;insulin-like growth factor binding;0.0193050468759818!GO:0031529;ruffle organization and biogenesis;0.0193946882360815!GO:0015992;proton transport;0.0199733415953875!GO:0006352;transcription initiation;0.0200153096089559!GO:0051348;negative regulation of transferase activity;0.0203360079751467!GO:0006350;transcription;0.0203509187612632!GO:0003711;transcription elongation regulator activity;0.0207872363021616!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0207881431592668!GO:0005581;collagen;0.0208272587529999!GO:0000287;magnesium ion binding;0.0208965622124072!GO:0008632;apoptotic program;0.0211567840429196!GO:0016301;kinase activity;0.0212637709041853!GO:0050681;androgen receptor binding;0.0212637709041853!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0212704660172283!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0214728930110074!GO:0031625;ubiquitin protein ligase binding;0.0214986313256463!GO:0043022;ribosome binding;0.021560150965306!GO:0006818;hydrogen transport;0.0216755992933625!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0222345292644933!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0225850191164287!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0225999218099902!GO:0005832;chaperonin-containing T-complex;0.0230570097959163!GO:0051098;regulation of binding;0.0231467284090096!GO:0030145;manganese ion binding;0.0231989047617053!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0234210415124317!GO:0009967;positive regulation of signal transduction;0.023459218781167!GO:0048144;fibroblast proliferation;0.0241659666972897!GO:0048145;regulation of fibroblast proliferation;0.0241659666972897!GO:0006497;protein amino acid lipidation;0.0243879646804152!GO:0044420;extracellular matrix part;0.024668547523681!GO:0009116;nucleoside metabolic process;0.0249136793695006!GO:0032940;secretion by cell;0.0250407899311574!GO:0007346;regulation of progression through mitotic cell cycle;0.0259628760992113!GO:0044452;nucleolar part;0.02639538268397!GO:0032984;macromolecular complex disassembly;0.0267722760975723!GO:0008243;plasminogen activator activity;0.0267960220992807!GO:0006417;regulation of translation;0.0270154056537719!GO:0008629;induction of apoptosis by intracellular signals;0.0276575367430784!GO:0051287;NAD binding;0.0276643056212594!GO:0006405;RNA export from nucleus;0.0277570514220142!GO:0022415;viral reproductive process;0.0280530739298202!GO:0007034;vacuolar transport;0.0281689490401894!GO:0035035;histone acetyltransferase binding;0.0282623761463028!GO:0003756;protein disulfide isomerase activity;0.0282800093580127!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0282800093580127!GO:0006897;endocytosis;0.0288077308108953!GO:0010324;membrane invagination;0.0288077308108953!GO:0043624;cellular protein complex disassembly;0.0289037065370251!GO:0030032;lamellipodium biogenesis;0.0292484145390077!GO:0050811;GABA receptor binding;0.0292756408683238!GO:0030384;phosphoinositide metabolic process;0.0294169472778624!GO:0012506;vesicle membrane;0.0294169472778624!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0294169472778624!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0294169472778624!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.029582466866488!GO:0046467;membrane lipid biosynthetic process;0.029582466866488!GO:0031371;ubiquitin conjugating enzyme complex;0.0299467783115821!GO:0006284;base-excision repair;0.0300314628741525!GO:0048146;positive regulation of fibroblast proliferation;0.0300314628741525!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0307995321211641!GO:0005876;spindle microtubule;0.0316471683039375!GO:0043065;positive regulation of apoptosis;0.0319271562469651!GO:0006778;porphyrin metabolic process;0.0319271562469651!GO:0033013;tetrapyrrole metabolic process;0.0319271562469651!GO:0006310;DNA recombination;0.0319978584343953!GO:0007040;lysosome organization and biogenesis;0.0321659859899826!GO:0016584;nucleosome positioning;0.0322524853351583!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0323226641177334!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.032511788315064!GO:0007093;mitotic cell cycle checkpoint;0.0329659708491217!GO:0007041;lysosomal transport;0.034818809901309!GO:0006338;chromatin remodeling;0.0348365331262182!GO:0000902;cell morphogenesis;0.0348470766765524!GO:0032989;cellular structure morphogenesis;0.0348470766765524!GO:0007265;Ras protein signal transduction;0.0350567363227235!GO:0007088;regulation of mitosis;0.0352857017887332!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0352866553964663!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0352866553964663!GO:0006979;response to oxidative stress;0.0355583730644367!GO:0000910;cytokinesis;0.0360278494660016!GO:0042770;DNA damage response, signal transduction;0.0361584746187448!GO:0030911;TPR domain binding;0.0361584746187448!GO:0006144;purine base metabolic process;0.0363932544301481!GO:0043241;protein complex disassembly;0.0368152171669007!GO:0030496;midbody;0.0369171939004542!GO:0043068;positive regulation of programmed cell death;0.0373704547891344!GO:0006984;ER-nuclear signaling pathway;0.0380697839711983!GO:0000209;protein polyubiquitination;0.038155999289711!GO:0030433;ER-associated protein catabolic process;0.0389874319513642!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0389874319513642!GO:0005595;collagen type XII;0.0393971622376008!GO:0045926;negative regulation of growth;0.0393971622376008!GO:0051540;metal cluster binding;0.0395220204939522!GO:0051536;iron-sulfur cluster binding;0.0395220204939522!GO:0010468;regulation of gene expression;0.0395220204939522!GO:0004003;ATP-dependent DNA helicase activity;0.0395220204939522!GO:0006376;mRNA splice site selection;0.0400783901728884!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0400783901728884!GO:0007160;cell-matrix adhesion;0.0406087331311156!GO:0046519;sphingoid metabolic process;0.041103254562994!GO:0006220;pyrimidine nucleotide metabolic process;0.0413534538554774!GO:0001666;response to hypoxia;0.0414990353321044!GO:0031589;cell-substrate adhesion;0.0414990353321044!GO:0007569;cell aging;0.0417806998499024!GO:0030508;thiol-disulfide exchange intermediate activity;0.0428356530282794!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0430610587918519!GO:0042168;heme metabolic process;0.0430610587918519!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0435064314196912!GO:0004527;exonuclease activity;0.0444990562067913!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0447040445316106!GO:0030518;steroid hormone receptor signaling pathway;0.0451333375031536!GO:0040029;regulation of gene expression, epigenetic;0.0457465498005972!GO:0005669;transcription factor TFIID complex;0.0458672533865586!GO:0006289;nucleotide-excision repair;0.0458672533865586!GO:0009225;nucleotide-sugar metabolic process;0.045938616229685!GO:0043414;biopolymer methylation;0.0460231470374321!GO:0008033;tRNA processing;0.0460231470374321!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0460231470374321!GO:0006739;NADP metabolic process;0.0463372378062166!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0466212710682059!GO:0005774;vacuolar membrane;0.046804815218323!GO:0000118;histone deacetylase complex;0.046804815218323!GO:0008287;protein serine/threonine phosphatase complex;0.0472160757223246!GO:0005856;cytoskeleton;0.0476473964092128!GO:0022408;negative regulation of cell-cell adhesion;0.0483367643663107!GO:0030119;AP-type membrane coat adaptor complex;0.0485476292686936!GO:0008652;amino acid biosynthetic process;0.0485476292686936!GO:0031272;regulation of pseudopodium formation;0.0485476292686936!GO:0031269;pseudopodium formation;0.0485476292686936!GO:0031344;regulation of cell projection organization and biogenesis;0.0485476292686936!GO:0031268;pseudopodium organization and biogenesis;0.0485476292686936!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0485476292686936!GO:0031274;positive regulation of pseudopodium formation;0.0485476292686936!GO:0001952;regulation of cell-matrix adhesion;0.0493433132184335!GO:0007017;microtubule-based process;0.049387363400936 | |||
|sample_id=10737 | |sample_id=10737 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 98: | ||
|sample_tissue=connective tissue | |sample_tissue=connective tissue | ||
|top_motifs=HMGA1,2:1.79967016529;HBP1_HMGB_SSRP1_UBTF:1.61277082184;EVI1:1.51995185447;XBP1:1.49596590549;HIF1A:1.48200037787;FOXL1:1.43272513805;GZF1:1.3948627295;GLI1..3:1.36481632737;UFEwm:1.34193174869;HES1:1.33566145485;GCM1,2:1.32656452221;TFAP2B:1.1474062511;TFAP4:1.12538638581;HOX{A5,B5}:1.11858512404;MAFB:1.09923642633;HOX{A6,A7,B6,B7}:1.09222925709;NKX2-2,8:1.06775790342;TEAD1:1.05284664421;KLF4:1.04893015566;TFDP1:1.04037884392;XCPE1{core}:1.01825535816;MTE{core}:1.00165246647;TFAP2{A,C}:0.977592009139;TAL1_TCF{3,4,12}:0.975245784358;SRF:0.956292914175;PPARG:0.934755318678;ADNP_IRX_SIX_ZHX:0.916509345138;GFI1B:0.908145582913;MYBL2:0.884383791711;EN1,2:0.868719361183;TLX1..3_NFIC{dimer}:0.85454522994;FOXA2:0.842631619999;AIRE:0.806746703584;HAND1,2:0.804009923741;NR3C1:0.798808233065;GATA4:0.779093247421;POU5F1:0.761689106812;ESR1:0.752321298392;GTF2A1,2:0.748701964938;HSF1,2:0.746467010081;HMX1:0.722658888316;NKX3-1:0.721332481055;PAX3,7:0.720655706173;HOX{A4,D4}:0.714683903197;NR6A1:0.711804651891;SOX17:0.68292043113;IKZF1:0.682564670246;MZF1:0.680458564289;PAX1,9:0.680303719162;NKX3-2:0.674802720923;GTF2I:0.661344064893;TP53:0.650292391322;MAZ:0.646233702574;TFCP2:0.621733744269;NFATC1..3:0.620059603328;HIC1:0.594483449453;RXR{A,B,G}:0.577865952868;ZNF384:0.553103146824;HLF:0.536927290354;PAX8:0.52959292966;POU3F1..4:0.527617350645;PRDM1:0.526288650939;ALX4:0.496493138338;EGR1..3:0.396450179227;MTF1:0.386211078739;TBP:0.375636751466;EBF1:0.370340885119;POU1F1:0.366562704687;ZNF148:0.356910337006;PAX5:0.354243757686;ZBTB6:0.335749288265;RXRA_VDR{dimer}:0.328078142682;CDC5L:0.297633276903;ATF6:0.274382175836;E2F1..5:0.254909556373;SMAD1..7,9:0.252338721022;AHR_ARNT_ARNT2:0.247290100818;AR:0.204428277309;PATZ1:0.203334201939;PITX1..3:0.199480327632;MYB:0.193996291326;NANOG{mouse}:0.192641564368;POU6F1:0.188294205903;TBX4,5:0.17345056509;ZIC1..3:0.16536484196;ZNF238:0.16276935278;ZFP161:0.151274103079;ZBTB16:0.139559272722;TOPORS:0.137421968854;PAX4:0.107189141785;NFIX:0.0989019850761;NFE2L1:0.0804317630823;T:0.0747713014517;BREu{core}:0.0674329367168;LHX3,4:0.0671679889293;SPZ1:0.0478490477049;MED-1{core}:0.0427123977197;BACH2:0.00294063761263;ONECUT1,2:-0.0034820123413;RREB1:-0.0134062024777;STAT2,4,6:-0.0252822944201;MEF2{A,B,C,D}:-0.0301454311602;CREB1:-0.0378980631964;GFI1:-0.0416576873989;LEF1_TCF7_TCF7L1,2:-0.0551939480991;FOS_FOS{B,L1}_JUN{B,D}:-0.0622141230694;NFE2L2:-0.0833983808583;FOSL2:-0.105696977554;STAT5{A,B}:-0.114500535867;HNF1A:-0.118681237202;CEBPA,B_DDIT3:-0.125095815893;JUN:-0.130533450153;DMAP1_NCOR{1,2}_SMARC:-0.136274120578;FOXO1,3,4:-0.141200818318;ZNF143:-0.151251274989;FOXD3:-0.168708099305;NHLH1,2:-0.168922140561;ZNF423:-0.188060553469;REST:-0.212428614122;DBP:-0.219687620223;MYFfamily:-0.229713107815;TEF:-0.248773478883;SP1:-0.264274229037;NKX2-1,4:-0.266941981197;PAX6:-0.271803001588;VSX1,2:-0.280300143597;FOX{F1,F2,J1}:-0.282237726617;PAX2:-0.288233988783;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.288880936169;NKX2-3_NKX2-5:-0.307604372436;FOXP3:-0.323964935469;RUNX1..3:-0.326143448864;NR5A1,2:-0.34443563008;NFE2:-0.35011557839;NFKB1_REL_RELA:-0.359747268507;IRF1,2:-0.374016920237;bHLH_family:-0.381360521781;ELK1,4_GABP{A,B1}:-0.411160341428;FOX{I1,J2}:-0.434142811218;ATF4:-0.441394331621;IKZF2:-0.443265336816;CRX:-0.447397737804;FOX{D1,D2}:-0.455274584303;RFX1:-0.455931628389;SPI1:-0.461318308037;SOX5:-0.488275388006;NRF1:-0.502805095005;ARID5B:-0.508514073044;NFIL3:-0.516954180692;ETS1,2:-0.518261490571;OCT4_SOX2{dimer}:-0.52089675596;TGIF1:-0.535850671039;SOX2:-0.538240021211;EP300:-0.543711796272;YY1:-0.573181701029;ATF2:-0.590509402473;ATF5_CREB3:-0.60560347185;PRRX1,2:-0.621695465625;PDX1:-0.6299893037;SPIB:-0.637051539128;FOXN1:-0.637434144656;SOX{8,9,10}:-0.652753568859;FOXP1:-0.668634888315;POU2F1..3:-0.680128943355;ALX1:-0.690472909757;BPTF:-0.693046238468;SNAI1..3:-0.717775688367;CUX2:-0.734313446531;HNF4A_NR2F1,2:-0.781041361923;TLX2:-0.824708691918;NR1H4:-0.841358084952;ELF1,2,4:-0.848746713161;NFY{A,B,C}:-0.865369451842;IRF7:-0.890364101914;SREBF1,2:-0.891482563696;GATA6:-0.902789301738;ZEB1:-0.92536116407;FOXM1:-0.951622582179;FOXQ1:-0.981132612134;STAT1,3:-0.991428147554;ESRRA:-1.04902029593;HOXA9_MEIS1:-1.04992103428;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.09520300802;NANOG:-1.1035716856;LMO2:-1.11012511303;RORA:-1.11509849107;CDX1,2,4:-1.20521295482;NKX6-1,2:-1.25715381365;RFX2..5_RFXANK_RFXAP:-1.38342211095;PBX1:-1.49420062243;MYOD1:-1.62295729426;RBPJ:-1.76459346217 | |top_motifs=HMGA1,2:1.79967016529;HBP1_HMGB_SSRP1_UBTF:1.61277082184;EVI1:1.51995185447;XBP1:1.49596590549;HIF1A:1.48200037787;FOXL1:1.43272513805;GZF1:1.3948627295;GLI1..3:1.36481632737;UFEwm:1.34193174869;HES1:1.33566145485;GCM1,2:1.32656452221;TFAP2B:1.1474062511;TFAP4:1.12538638581;HOX{A5,B5}:1.11858512404;MAFB:1.09923642633;HOX{A6,A7,B6,B7}:1.09222925709;NKX2-2,8:1.06775790342;TEAD1:1.05284664421;KLF4:1.04893015566;TFDP1:1.04037884392;XCPE1{core}:1.01825535816;MTE{core}:1.00165246647;TFAP2{A,C}:0.977592009139;TAL1_TCF{3,4,12}:0.975245784358;SRF:0.956292914175;PPARG:0.934755318678;ADNP_IRX_SIX_ZHX:0.916509345138;GFI1B:0.908145582913;MYBL2:0.884383791711;EN1,2:0.868719361183;TLX1..3_NFIC{dimer}:0.85454522994;FOXA2:0.842631619999;AIRE:0.806746703584;HAND1,2:0.804009923741;NR3C1:0.798808233065;GATA4:0.779093247421;POU5F1:0.761689106812;ESR1:0.752321298392;GTF2A1,2:0.748701964938;HSF1,2:0.746467010081;HMX1:0.722658888316;NKX3-1:0.721332481055;PAX3,7:0.720655706173;HOX{A4,D4}:0.714683903197;NR6A1:0.711804651891;SOX17:0.68292043113;IKZF1:0.682564670246;MZF1:0.680458564289;PAX1,9:0.680303719162;NKX3-2:0.674802720923;GTF2I:0.661344064893;TP53:0.650292391322;MAZ:0.646233702574;TFCP2:0.621733744269;NFATC1..3:0.620059603328;HIC1:0.594483449453;RXR{A,B,G}:0.577865952868;ZNF384:0.553103146824;HLF:0.536927290354;PAX8:0.52959292966;POU3F1..4:0.527617350645;PRDM1:0.526288650939;ALX4:0.496493138338;EGR1..3:0.396450179227;MTF1:0.386211078739;TBP:0.375636751466;EBF1:0.370340885119;POU1F1:0.366562704687;ZNF148:0.356910337006;PAX5:0.354243757686;ZBTB6:0.335749288265;RXRA_VDR{dimer}:0.328078142682;CDC5L:0.297633276903;ATF6:0.274382175836;E2F1..5:0.254909556373;SMAD1..7,9:0.252338721022;AHR_ARNT_ARNT2:0.247290100818;AR:0.204428277309;PATZ1:0.203334201939;PITX1..3:0.199480327632;MYB:0.193996291326;NANOG{mouse}:0.192641564368;POU6F1:0.188294205903;TBX4,5:0.17345056509;ZIC1..3:0.16536484196;ZNF238:0.16276935278;ZFP161:0.151274103079;ZBTB16:0.139559272722;TOPORS:0.137421968854;PAX4:0.107189141785;NFIX:0.0989019850761;NFE2L1:0.0804317630823;T:0.0747713014517;BREu{core}:0.0674329367168;LHX3,4:0.0671679889293;SPZ1:0.0478490477049;MED-1{core}:0.0427123977197;BACH2:0.00294063761263;ONECUT1,2:-0.0034820123413;RREB1:-0.0134062024777;STAT2,4,6:-0.0252822944201;MEF2{A,B,C,D}:-0.0301454311602;CREB1:-0.0378980631964;GFI1:-0.0416576873989;LEF1_TCF7_TCF7L1,2:-0.0551939480991;FOS_FOS{B,L1}_JUN{B,D}:-0.0622141230694;NFE2L2:-0.0833983808583;FOSL2:-0.105696977554;STAT5{A,B}:-0.114500535867;HNF1A:-0.118681237202;CEBPA,B_DDIT3:-0.125095815893;JUN:-0.130533450153;DMAP1_NCOR{1,2}_SMARC:-0.136274120578;FOXO1,3,4:-0.141200818318;ZNF143:-0.151251274989;FOXD3:-0.168708099305;NHLH1,2:-0.168922140561;ZNF423:-0.188060553469;REST:-0.212428614122;DBP:-0.219687620223;MYFfamily:-0.229713107815;TEF:-0.248773478883;SP1:-0.264274229037;NKX2-1,4:-0.266941981197;PAX6:-0.271803001588;VSX1,2:-0.280300143597;FOX{F1,F2,J1}:-0.282237726617;PAX2:-0.288233988783;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.288880936169;NKX2-3_NKX2-5:-0.307604372436;FOXP3:-0.323964935469;RUNX1..3:-0.326143448864;NR5A1,2:-0.34443563008;NFE2:-0.35011557839;NFKB1_REL_RELA:-0.359747268507;IRF1,2:-0.374016920237;bHLH_family:-0.381360521781;ELK1,4_GABP{A,B1}:-0.411160341428;FOX{I1,J2}:-0.434142811218;ATF4:-0.441394331621;IKZF2:-0.443265336816;CRX:-0.447397737804;FOX{D1,D2}:-0.455274584303;RFX1:-0.455931628389;SPI1:-0.461318308037;SOX5:-0.488275388006;NRF1:-0.502805095005;ARID5B:-0.508514073044;NFIL3:-0.516954180692;ETS1,2:-0.518261490571;OCT4_SOX2{dimer}:-0.52089675596;TGIF1:-0.535850671039;SOX2:-0.538240021211;EP300:-0.543711796272;YY1:-0.573181701029;ATF2:-0.590509402473;ATF5_CREB3:-0.60560347185;PRRX1,2:-0.621695465625;PDX1:-0.6299893037;SPIB:-0.637051539128;FOXN1:-0.637434144656;SOX{8,9,10}:-0.652753568859;FOXP1:-0.668634888315;POU2F1..3:-0.680128943355;ALX1:-0.690472909757;BPTF:-0.693046238468;SNAI1..3:-0.717775688367;CUX2:-0.734313446531;HNF4A_NR2F1,2:-0.781041361923;TLX2:-0.824708691918;NR1H4:-0.841358084952;ELF1,2,4:-0.848746713161;NFY{A,B,C}:-0.865369451842;IRF7:-0.890364101914;SREBF1,2:-0.891482563696;GATA6:-0.902789301738;ZEB1:-0.92536116407;FOXM1:-0.951622582179;FOXQ1:-0.981132612134;STAT1,3:-0.991428147554;ESRRA:-1.04902029593;HOXA9_MEIS1:-1.04992103428;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.09520300802;NANOG:-1.1035716856;LMO2:-1.11012511303;RORA:-1.11509849107;CDX1,2,4:-1.20521295482;NKX6-1,2:-1.25715381365;RFX2..5_RFXANK_RFXAP:-1.38342211095;PBX1:-1.49420062243;MYOD1:-1.62295729426;RBPJ:-1.76459346217 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10737-110B8;search_select_hide=table117:FF:10737-110B8 | |||
}} | }} | ||
Latest revision as of 15:02, 3 June 2020
| Name: | spindle cell sarcoma cell line:Hs 132.T |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11857 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11857
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11857
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.349 |
| 10 | 10 | 0.271 |
| 100 | 100 | 0.166 |
| 101 | 101 | 0.208 |
| 102 | 102 | 0.299 |
| 103 | 103 | 0.765 |
| 104 | 104 | 0.889 |
| 105 | 105 | 0.0786 |
| 106 | 106 | 0.367 |
| 107 | 107 | 0.0546 |
| 108 | 108 | 0.29 |
| 109 | 109 | 0.213 |
| 11 | 11 | 0.5 |
| 110 | 110 | 0.262 |
| 111 | 111 | 0.923 |
| 112 | 112 | 0.84 |
| 113 | 113 | 0.0173 |
| 114 | 114 | 0.482 |
| 115 | 115 | 0.0513 |
| 116 | 116 | 0.0909 |
| 117 | 117 | 0.115 |
| 118 | 118 | 0.119 |
| 119 | 119 | 0.922 |
| 12 | 12 | 0.334 |
| 120 | 120 | 0.737 |
| 121 | 121 | 0.662 |
| 122 | 122 | 0.411 |
| 123 | 123 | 0.0045 |
| 124 | 124 | 0.0871 |
| 125 | 125 | 0.499 |
| 126 | 126 | 0.598 |
| 127 | 127 | 0.746 |
| 128 | 128 | 0.682 |
| 129 | 129 | 0.415 |
| 13 | 13 | 0.163 |
| 130 | 130 | 0.789 |
| 131 | 131 | 0.93 |
| 132 | 132 | 0.44 |
| 133 | 133 | 0.734 |
| 134 | 134 | 0.321 |
| 135 | 135 | 0.83 |
| 136 | 136 | 0.614 |
| 137 | 137 | 0.347 |
| 138 | 138 | 0.807 |
| 139 | 139 | 0.456 |
| 14 | 14 | 0.221 |
| 140 | 140 | 0.216 |
| 141 | 141 | 0.112 |
| 142 | 142 | 0.91 |
| 143 | 143 | 0.973 |
| 144 | 144 | 0.721 |
| 145 | 145 | 0.78 |
| 146 | 146 | 0.224 |
| 147 | 147 | 0.00787 |
| 148 | 148 | 0.298 |
| 149 | 149 | 0.239 |
| 15 | 15 | 0.295 |
| 150 | 150 | 0.101 |
| 151 | 151 | 0.774 |
| 152 | 152 | 0.0572 |
| 153 | 153 | 0.561 |
| 154 | 154 | 0.205 |
| 155 | 155 | 0.0566 |
| 156 | 156 | 0.691 |
| 157 | 157 | 0.147 |
| 158 | 158 | 0.0168 |
| 159 | 159 | 0.498 |
| 16 | 16 | 0.152 |
| 160 | 160 | 0.403 |
| 161 | 161 | 0.338 |
| 162 | 162 | 0.936 |
| 163 | 163 | 0.309 |
| 164 | 164 | 0.634 |
| 165 | 165 | 0.165 |
| 166 | 166 | 0.0769 |
| 167 | 167 | 0.356 |
| 168 | 168 | 0.527 |
| 169 | 169 | 0.918 |
| 17 | 17 | 0.636 |
| 18 | 18 | 0.183 |
| 19 | 19 | 0.405 |
| 2 | 2 | 0.479 |
| 20 | 20 | 0.483 |
| 21 | 21 | 0.365 |
| 22 | 22 | 0.883 |
| 23 | 23 | 0.326 |
| 24 | 24 | 0.0918 |
| 25 | 25 | 0.241 |
| 26 | 26 | 0.843 |
| 27 | 27 | 0.478 |
| 28 | 28 | 0.289 |
| 29 | 29 | 0.307 |
| 3 | 3 | 0.424 |
| 30 | 30 | 0.569 |
| 31 | 31 | 0.868 |
| 32 | 32 | 9.69511e-10 |
| 33 | 33 | 0.163 |
| 34 | 34 | 0.747 |
| 35 | 35 | 0.0576 |
| 36 | 36 | 0.0043 |
| 37 | 37 | 0.584 |
| 38 | 38 | 0.491 |
| 39 | 39 | 0.431 |
| 4 | 4 | 0.648 |
| 40 | 40 | 0.0208 |
| 41 | 41 | 0.38 |
| 42 | 42 | 0.312 |
| 43 | 43 | 0.612 |
| 44 | 44 | 0.779 |
| 45 | 45 | 0.805 |
| 46 | 46 | 0.9 |
| 47 | 47 | 0.145 |
| 48 | 48 | 0.213 |
| 49 | 49 | 0.432 |
| 5 | 5 | 0.744 |
| 50 | 50 | 0.643 |
| 51 | 51 | 0.375 |
| 52 | 52 | 0.728 |
| 53 | 53 | 0.0951 |
| 54 | 54 | 0.994 |
| 55 | 55 | 0.499 |
| 56 | 56 | 0.91 |
| 57 | 57 | 0.865 |
| 58 | 58 | 0.162 |
| 59 | 59 | 0.688 |
| 6 | 6 | 0.739 |
| 60 | 60 | 0.907 |
| 61 | 61 | 0.137 |
| 62 | 62 | 0.372 |
| 63 | 63 | 0.836 |
| 64 | 64 | 0.233 |
| 65 | 65 | 0.848 |
| 66 | 66 | 0.885 |
| 67 | 67 | 0.422 |
| 68 | 68 | 0.324 |
| 69 | 69 | 0.859 |
| 7 | 7 | 0.13 |
| 70 | 70 | 0.839 |
| 71 | 71 | 0.0633 |
| 72 | 72 | 0.31 |
| 73 | 73 | 0.263 |
| 74 | 74 | 0.193 |
| 75 | 75 | 0.183 |
| 76 | 76 | 0.981 |
| 77 | 77 | 0.373 |
| 78 | 78 | 0.268 |
| 79 | 79 | 0.0137 |
| 8 | 8 | 0.833 |
| 80 | 80 | 0.336 |
| 81 | 81 | 0.822 |
| 82 | 82 | 0.25 |
| 83 | 83 | 0.131 |
| 84 | 84 | 0.456 |
| 85 | 85 | 0.746 |
| 86 | 86 | 0.955 |
| 87 | 87 | 0.629 |
| 88 | 88 | 0.929 |
| 89 | 89 | 0.159 |
| 9 | 9 | 0.981 |
| 90 | 90 | 0.749 |
| 91 | 91 | 0.613 |
| 92 | 92 | 0.368 |
| 93 | 93 | 0.974 |
| 94 | 94 | 0.722 |
| 95 | 95 | 0.545 |
| 96 | 96 | 0.92 |
| 97 | 97 | 0.366 |
| 98 | 98 | 0.214 |
| 99 | 99 | 0.0357 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11857
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
DOID:4235 spindle cell sarcoma
EFO:0002091 biological replicate
FF:0000003 cell line sample
FF:0000210 human sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1115 (sarcoma)
4235 (spindle cell sarcoma)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
