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{{f5samples
 
{{f5samples
 +
|DRA_sample_Accession=CAGE@SAMD00005659
 +
|accession_numbers=CAGE;DRX007772;DRR008644;DRZ000069;DRZ001454;DRZ011419;DRZ012804
 
|ancestors_in_anatomy_facet=
 
|ancestors_in_anatomy_facet=
 
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255
 
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255
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|created_by=
 
|created_by=
 
|creation_date=
 
|creation_date=
|datafreeze_phase=1
+
|data_phase=2
 +
|datafreeze_phase=2
 
|def=
 
|def=
 
|expression_enrichment_score=chr11:47400078..47400106,-!p1@SPI1!2.15!139.42!SPI1;;chr2:68592406..68592424,+!p1@PLEK!2.14!136.35!PLEK;;chr7:27205136..27205164,-!p1@HOXA9!2.14!136.16!HOXA9;;chr2:16080659..16080685,+!p1@MYCN!2.08!118.16!MYCN;;chr21:39870339..39870443,-!p1@ERG!2.05!110.31!ERG;;chr1:25256756..25256774,-!p1@RUNX3!1.90!144.40!RUNX3;;chr4:57522513..57522548,-!p4@HOPX!1.90!78.90!HOPX;;chr12:54694758..54694805,-!p1@NFE2!1.82!77.56!NFE2;;chr4:54966328..54966335,+!p1@GSX2!1.81!63.39!GSX2;;chr12:54694807..54694832,-!p3@NFE2!1.80!62.05!NFE2;;chr19:13213662..13213686,-!p1@LYL1!1.75!81.01!LYL1;;chr6:135502408..135502459,+!p2@MYB!1.74!62.24!MYB;;chr20:31350184..31350200,+!p1@DNMT3B!1.73!107.63!DNMT3B;;chr6:135502501..135502546,+!p1@MYB!1.68!56.30!MYB;;chr9:135854091..135854159,+!p1@GFI1B!1.63!42.13!GFI1B;;chr7:27205106..27205134,-!p2@HOXA9!1.58!37.34!HOXA9;;chr7:50344289..50344323,+!p1@IKZF1!1.58!37.15!IKZF1;;chr7:27213893..27213954,-!p1@HOXA10!1.52!31.79!HOXA10;;chr4:57522598..57522664,-!p3@HOPX!1.50!30.64!HOPX;;chr7:137620650..137620677,-!p3@CREB3L2!1.48!29.49!CREB3L2;;chr7:27192185..27192209,-!p1@HOXA3!1.44!26.24!HOXA3;;chr1:92951607..92951661,-!p1@GFI1!1.42!25.09!GFI1;;chr2:16082155..16082169,+!p3@MYCN!1.40!24.13!MYCN;;chr14:75988771..75988826,+!p1@BATF!1.39!30.83!BATF;;chr4:57522674..57522699,-!p5@HOPX!1.39!23.36!HOPX;;chr1:42384532..42384603,-!p2@HIVEP3!1.36!22.02!HIVEP3;;chr19:13213511..13213545,-!p2@LYL1!1.35!23.36!LYL1;;chr19:33793430..33793447,-!p1@CEBPA!1.32!81.58!CEBPA;;chr11:47400062..47400077,-!p2@SPI1!1.32!19.92!SPI1;;chr11:47399996..47400014,-!p4@SPI1!1.29!18.38!SPI1;;chrY:21906594..21906622,-!p1@KDM5D!1.27!17.81!KDM5D;;chr8:40755333..40755352,-!p1@ZMAT4!1.26!17.04!ZMAT4;;chr10:94449703..94449718,+!p1@HHEX!1.23!61.47!HHEX;;chr19:13213954..13214021,-!p4@LYL1!1.23!15.89!LYL1;;chr2:68592394..68592405,+!p2@PLEK!1.19!14.55!PLEK;;chr8:60031619..60031676,-!p1@TOX!1.18!30.26!TOX;;chr7:50344251..50344288,+!p3@IKZF1!1.15!13.02!IKZF1;;chr2:16080635..16080650,+!p4@MYCN!1.13!12.45!MYCN;;chr2:16081912..16081931,+!p2@MYCN!1.12!12.06!MYCN;;chr19:22235279..22235301,+!p1@ZNF257!1.11!22.60!ZNF257;;chr7:27196217..27196246,-!p2@HOXA7!1.11!11.87!HOXA7;;chr7:137620684..137620711,-!p4@CREB3L2!1.10!11.68!CREB3L2;;chr13:41593425..41593480,-!p1@ELF1!1.09!72.77!ELF1;;chr11:47399947..47399961,-!p3@SPI1!1.08!11.11!SPI1;;chr6:144385698..144385742,-!p2@PLAGL1!1.07!13.02!PLAGL1;;chr3:168864315..168864339,-!p2@MECOM!1.06!17.43!MECOM;;chr12:11802547..11802560,+!p5@ETV6!1.06!14.55!ETV6;;chr12:54778471..54778528,-!p1@ZNF385A!1.05!10.15!ZNF385A;;chr10:94449675..94449694,+!p2@HHEX!1.04!27.39!HHEX;;chr21:36421535..36421610,-!p2@RUNX1!0.98!31.41!RUNX1;;chr5:88178983..88179012,-!p1@MEF2C!0.97!65.88!MEF2C;;chr11:47400032..47400043,-!p5@SPI1!0.97!8.23!SPI1;;chr19:20011744..20011770,+!p1@ZNF93!0.96!32.75!ZNF93;;chr17:79881332..79881348,-!p3@MAFG!0.96!12.06!MAFG;;chr17:46622205..46622218,-!p3@HOXB2!0.96!9.58!HOXB2;;chr5:321810..321877,+!p1@AHRR!0.95!25.66!AHRR;;chr19:24097706..24097731,+!p2@ZNF726!0.95!15.32!ZNF726;;chr11:47400045..47400060,-!p6@SPI1!0.95!7.85!SPI1;;chr6:126240463..126240489,+!p6@NCOA7!0.94!8.81!NCOA7;;chr7:50343634..50343717,+!p2@IKZF1!0.93!7.47!IKZF1;;chr3:114819101..114819121,-!p7@ZBTB20!0.92!7.28!ZBTB20;;chr6:126240380..126240430,+!p2@NCOA7!0.91!19.15!NCOA7;;chr19:12203100..12203132,+!p1@ZNF788!0.91!14.94!ZNF788;;chr3:18486354..18486377,-!p2@SATB1!0.91!9.00!SATB1;;chr4:57522753..57522760,-!p18@HOPX!0.91!7.09!HOPX;;chr2:192015750..192015793,-!p2@STAT4!0.90!9.58!STAT4;;chr19:20188776..20188826,+!p1@ZNF90!0.89!18.77!ZNF90;;chr20:50159198..50159299,-!p1@NFATC2!0.88!9.96!NFATC2;;chr2:208031943..208031978,-!p5@KLF7!0.87!8.81!KLF7;;chr11:128563948..128564003,+!p1@FLI1!0.86!79.09!FLI1;;chr17:1959369..1959388,+!p2@HIC1!0.86!17.04!HIC1;;chr19:36391434..36391450,-!p1@NFKBID!0.86!12.83!NFKBID;;chr19:13213704..13213726,-!p3@LYL1!0.86!8.43!LYL1;;chr7:115670804..115670825,-!p1@TFEC!0.86!6.32!TFEC;;chr7:128577972..128578047,+!p1@IRF5!0.85!9.96!IRF5;;chr17:46622114..46622138,-!p4@HOXB2!0.85!9.58!HOXB2;;chr4:57522166..57522260,-!p2@HOPX!0.85!7.09!HOPX;;chr8:60031563..60031574,-!p7@TOX!0.85!6.13!TOX;;chr22:29196547..29196563,-!p2@XBP1!0.84!231.15!XBP1;;chr6:20402102..20402152,+!p1@E2F3!0.84!25.66!E2F3;;chr5:88179017..88179046,-!p2@MEF2C!0.84!25.28!MEF2C;;chr19:11959532..11959593,+!p1@ZNF439!0.84!23.94!ZNF439;;chr7:149470641..149470694,-!p1@ZNF467!0.83!27.58!ZNF467;;chr6:15246200..15246214,+!p2@JARID2!0.83!16.66!JARID2;;chr19:13213555..13213568,-!p5@LYL1!0.83!5.75!LYL1;;chr1:92949331..92949377,-!p2@GFI1!0.83!5.75!GFI1;;chr3:128212033..128212051,-!p1@GATA2!0.83!5.75!GATA2;;chr3:63953435..63953499,+!p1@ATXN7!0.83!5.75!ATXN7;;chr9:20382446..20382493,-!p4@MLLT3!0.83!5.75!MLLT3;;chr9:117150254..117150271,-!p1@AKNA!0.82!16.09!AKNA;;chr6:126240442..126240459,+!p4@NCOA7!0.82!7.28!NCOA7;;chr19:21106081..21106115,+!p2@ZNF85!0.80!16.85!ZNF85;;chr2:192015701..192015743,-!p1@STAT4!0.80!7.47!STAT4;;chr4:57522701..57522712,-!p10@HOPX!0.80!5.36!HOPX;;chr10:94451574..94451587,+!p6@HHEX!0.79!5.17!HHEX;;chr4:81118647..81118666,+!p1@PRDM8!0.78!6.89!PRDM8;;chr6:135502472..135502489,+!p3@MYB!0.78!4.98!MYB;;chr6:391743..391759,+!p1@IRF4!0.78!4.98!IRF4;;chr17:46622175..46622186,-!p12@HOXB2!0.78!4.98!HOXB2;;chr19:45579725..45579743,-!p1@ZNF296!0.77!23.75!ZNF296;;chr19:24097675..24097699,+!p1@ZNF726!0.77!17.43!ZNF726;;chr3:128206762..128206781,-!p2@GATA2!0.76!32.56!GATA2;;chr2:60780607..60780624,-!p2@BCL11A!0.76!15.89!BCL11A;;chr3:71355163..71355209,-!p5@FOXP1!0.76!6.89!FOXP1;;chr17:46622440..46622477,-!p5@HOXB2!0.76!5.36!HOXB2;;chr7:50348268..50348366,+!p4@IKZF1!0.76!4.79!IKZF1;;chr19:22034809..22034878,-!p2@ZNF43!0.75!17.81!ZNF43;;chr3:44626446..44626477,+!p1@ZNF660!0.75!8.81!ZNF660;;chr12:54785074..54785122,-!p2@ZNF385A!0.75!7.47!ZNF385A;;chr19:53039233..53039247,+!p2@ZNF808!0.75!7.09!ZNF808;;chr17:40440481..40440550,+!p1@STAT5A!0.74!36.00!STAT5A;;chr19:19976683..19976709,+!p1@ZNF253!0.74!21.83!ZNF253;;chr17:46622070..46622109,-!p1@HOXB2!0.74!10.72!HOXB2;;chr19:23299814..23299844,+!p1@ZNF730!0.73!5.55!ZNF730;;chr16:88752861..88752884,-!p2@SNAI3!0.73!4.40!SNAI3;;chr17:46655672..46655697,-!p3@HOXB4!0.73!4.40!HOXB4;;chr17:42295682..42295731,-!p17@UBTF!0.72!4.21!UBTF;;chr17:61920280..61920343,-!p2@SMARCD2!0.71!44.81!SMARCD2;;chr14:74226961..74227020,-!p1@C14orf43!0.71!30.45!C14orf43;;chr19:23433144..23433204,-!p1@ZNF724P!0.71!20.49!ZNF724P;;chr17:53342311..53342400,+!p1@HLF!0.71!4.79!HLF;;chr19:12551785..12551823,-!p1@ZNF443!0.70!6.89!ZNF443;;chr22:29196492..29196503,-!p3@XBP1!0.70!6.51!XBP1;;chr8:60031534..60031553,-!p8@TOX!0.70!4.02!TOX;;chr7:64838786..64838809,+!p2@ZNF92!0.69!25.09!ZNF92;;chr17:1958388..1958404,+!p1@HIC1!0.68!27.39!HIC1;;chr1:153940354..153940395,+!p1@CREB3L4!0.68!17.43!CREB3L4;;chr19:21950332..21950356,-!p2@ZNF100!0.68!8.81!ZNF100;;chrY:2803415..2803468,+!p1@ZFY!0.68!3.83!ZFY;;chr21:40177845..40177863,+!p1@ETS2!0.67!251.26!ETS2;;chr18:45457423..45457468,-!p5@SMAD2!0.67!15.32!SMAD2;;chr19:12551824..12551846,-!p2@ZNF443!0.67!5.17!ZNF443;;chr19:20011731..20011743,+!p3@ZNF93!0.67!4.98!ZNF93;;chr14:75988831..75988847,+!p2@BATF!0.67!3.64!BATF;;chr2:102091566..102091581,-!p1@RFX8!0.67!3.64!RFX8;;chr11:19262421..19262455,-!p3@E2F8!0.67!3.64!E2F8;;chr17:41277372..41277418,-!p1@BRCA1!0.66!14.75!BRCA1;;chr19:23941680..23941704,-!p1@ZNF681!0.66!11.68!ZNF681;;chr19:23941647..23941672,-!p2@ZNF681!0.66!6.32!ZNF681;;chr3:141747459..141747475,-!p1@TFDP2!0.65!33.70!TFDP2;;chr14:55493763..55493824,-!p1@WDHD1!0.65!30.45!WDHD1;;chr19:53073532..53073551,+!p1@ZNF701!0.65!18.00!ZNF701;;chr1:33004996..33005017,+!p3@ZBTB8A!0.65!4.98!ZBTB8A;;chr18:45457909..45457939,-!p8@SMAD2!0.65!4.40!SMAD2;;chr19:22235310..22235319,+!p2@ZNF257!0.65!3.45!ZNF257;;chr7:63505799..63505904,+!p1@ZNF727!0.65!3.45!ZNF727;;chr1:25291475..25291511,-!p2@RUNX3!0.65!3.45!RUNX3;;chr10:51572339..51572376,+!p4@NCOA4!0.64!8.43!NCOA4;;chr19:20748574..20748599,-!p1@ZNF737!0.63!22.98!ZNF737;;chr17:46655704..46655718,-!p2@HOXB4!0.63!5.17!HOXB4;;chr21:36421347..36421380,-!p8@RUNX1!0.63!3.26!RUNX1;;chr2:60781201..60781258,-!p3@BCL11A!0.63!3.26!BCL11A;;chr3:168865250..168865272,-!p5@MECOM!0.63!3.26!MECOM;;chr7:27205175..27205184,-!p3@HOXA9!0.63!3.26!HOXA9;;chr12:96588368..96588394,+!p3@ELK3!0.62!9.77!ELK3;;chr17:46621937..46621966,-!p2@HOXB2!0.62!9.77!HOXB2;;chr9:127533519..127533573,-!p2@NR6A1!0.62!4.02!NR6A1;;chr12:54785054..54785072,-!p4@ZNF385A!0.62!3.64!ZNF385A;;chr1:149858461..149858479,+!p1@BOLA1!0.61!1472.68!BOLA1;;chr2:145277640..145277771,-!p1@ZEB2!0.61!49.03!ZEB2;;chr10:105110831..105110885,-!p1@PCGF6!0.61!35.24!PCGF6;;chr19:23869970..23869991,-!p1@ZNF675!0.61!13.60!ZNF675;;chr19:12405606..12405629,-!p2@ZNF44!0.61!6.70!ZNF44;;chr2:217277271..217277290,+!p3@SMARCAL1!0.61!5.36!SMARCAL1;;chr10:45496320..45496336,+!p3@ZNF22!0.61!3.06!ZNF22;;chr12:54694653..54694672,-!p2@NFE2!0.61!3.06!NFE2;;chr19:21106049..21106072,+!p1@ZNF85!0.60!19.53!ZNF85;;chr15:57511609..57511651,+!p2@TCF12!0.60!5.55!TCF12;;chr3:168865194..168865245,-!p3@MECOM!0.60!4.02!MECOM;;chr12:11802600..11802685,+!p1@ETV6!0.59!52.86!ETV6;;chr10:51572408..51572454,+!p3@NCOA4!0.59!20.49!NCOA4;;chr2:121493425..121493474,+!p1@GLI2!0.59!7.28!GLI2;;chr19:19976714..19976729,+!p3@ZNF253!0.59!6.13!ZNF253;;chr1:23857698..23857733,-!p1@E2F2!0.59!5.94!E2F2;;chr10:94449649..94449664,+!p3@HHEX!0.59!4.60!HHEX;;chr19:12163769..12163798,-!p1@ZNF878!0.59!4.02!ZNF878;;chr17:45810594..45810608,+!p1@TBX21!0.59!2.87!TBX21;;chr18:55102598..55102623,+!p1@ONECUT2!0.59!2.87!ONECUT2;;chr6:15246741..15246765,+!p9@JARID2!0.59!2.87!JARID2;;chr14:45722360..45722415,-!p1@MIS18BP1!0.58!54.00!MIS18BP1;;chr5:176738887..176738934,-!p1@MXD3!0.58!22.79!MXD3;;chr12:11802575..11802592,+!p6@ETV6!0.58!4.40!ETV6;;chr6:31126291..31126399,+!p1@TCF19!0.57!32.17!TCF19;;chr11:130184470..130184533,-!p2@ZBTB44!0.57!8.62!ZBTB44;;chr19:13213634..13213645,-!p8@LYL1!0.57!2.68!LYL1;;chrY:21906761..21906810,-!p2@KDM5D!0.57!2.68!KDM5D;;chr19:6110474..6110551,-!p1@RFX2!0.56!19.53!RFX2;;chr16:3313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|expression_enrichment_score=chr11:47400078..47400106,-!p1@SPI1!2.15!139.42!SPI1;;chr2:68592406..68592424,+!p1@PLEK!2.14!136.35!PLEK;;chr7:27205136..27205164,-!p1@HOXA9!2.14!136.16!HOXA9;;chr2:16080659..16080685,+!p1@MYCN!2.08!118.16!MYCN;;chr21:39870339..39870443,-!p1@ERG!2.05!110.31!ERG;;chr1:25256756..25256774,-!p1@RUNX3!1.90!144.40!RUNX3;;chr4:57522513..57522548,-!p4@HOPX!1.90!78.90!HOPX;;chr12:54694758..54694805,-!p1@NFE2!1.82!77.56!NFE2;;chr4:54966328..54966335,+!p1@GSX2!1.81!63.39!GSX2;;chr12:54694807..54694832,-!p3@NFE2!1.80!62.05!NFE2;;chr19:13213662..13213686,-!p1@LYL1!1.75!81.01!LYL1;;chr6:135502408..135502459,+!p2@MYB!1.74!62.24!MYB;;chr20:31350184..31350200,+!p1@DNMT3B!1.73!107.63!DNMT3B;;chr6:135502501..135502546,+!p1@MYB!1.68!56.30!MYB;;chr9:135854091..135854159,+!p1@GFI1B!1.63!42.13!GFI1B;;chr7:27205106..27205134,-!p2@HOXA9!1.58!37.34!HOXA9;;chr7:50344289..50344323,+!p1@IKZF1!1.58!37.15!IKZF1;;chr7:27213893..27213954,-!p1@HOXA10!1.52!31.79!HOXA10;;chr4:57522598..57522664,-!p3@HOPX!1.50!30.64!HOPX;;chr7:137620650..137620677,-!p3@CREB3L2!1.48!29.49!CREB3L2;;chr7:27192185..27192209,-!p1@HOXA3!1.44!26.24!HOXA3;;chr1:92951607..92951661,-!p1@GFI1!1.42!25.09!GFI1;;chr2:16082155..16082169,+!p3@MYCN!1.40!24.13!MYCN;;chr14:75988771..75988826,+!p1@BATF!1.39!30.83!BATF;;chr4:57522674..57522699,-!p5@HOPX!1.39!23.36!HOPX;;chr1:42384532..42384603,-!p2@HIVEP3!1.36!22.02!HIVEP3;;chr19:13213511..13213545,-!p2@LYL1!1.35!23.36!LYL1;;chr19:33793430..33793447,-!p1@CEBPA!1.32!81.58!CEBPA;;chr11:47400062..47400077,-!p2@SPI1!1.32!19.92!SPI1;;chr11:47399996..47400014,-!p4@SPI1!1.29!18.38!SPI1;;chrY:21906594..21906622,-!p1@KDM5D!1.27!17.81!KDM5D;;chr8:40755333..40755352,-!p1@ZMAT4!1.26!17.04!ZMAT4;;chr10:94449703..94449718,+!p1@HHEX!1.23!61.47!HHEX;;chr19:13213954..13214021,-!p4@LYL1!1.23!15.89!LYL1;;chr2:68592394..68592405,+!p2@PLEK!1.19!14.55!PLEK;;chr8:60031619..60031676,-!p1@TOX!1.18!30.26!TOX;;chr7:50344251..50344288,+!p3@IKZF1!1.15!13.02!IKZF1;;chr2:16080635..16080650,+!p4@MYCN!1.13!12.45!MYCN;;chr2:16081912..16081931,+!p2@MYCN!1.12!12.06!MYCN;;chr19:22235279..22235301,+!p1@ZNF257!1.11!22.60!ZNF257;;chr7:27196217..27196246,-!p2@HOXA7!1.11!11.87!HOXA7;;chr7:137620684..137620711,-!p4@CREB3L2!1.10!11.68!CREB3L2;;chr13:41593425..41593480,-!p1@ELF1!1.09!72.77!ELF1;;chr11:47399947..47399961,-!p3@SPI1!1.08!11.11!SPI1;;chr6:144385698..144385742,-!p2@PLAGL1!1.07!13.02!PLAGL1;;chr3:168864315..168864339,-!p2@MECOM!1.06!17.43!MECOM;;chr12:11802547..11802560,+!p5@ETV6!1.06!14.55!ETV6;;chr12:54778471..54778528,-!p1@ZNF385A!1.05!10.15!ZNF385A;;chr10:94449675..94449694,+!p2@HHEX!1.04!27.39!HHEX;;chr21:36421535..36421610,-!p2@RUNX1!0.98!31.41!RUNX1;;chr5:88178983..88179012,-!p1@MEF2C!0.97!65.88!MEF2C;;chr11:47400032..47400043,-!p5@SPI1!0.97!8.23!SPI1;;chr19:20011744..20011770,+!p1@ZNF93!0.96!32.75!ZNF93;;chr17:79881332..79881348,-!p3@MAFG!0.96!12.06!MAFG;;chr17:46622205..46622218,-!p3@HOXB2!0.96!9.58!HOXB2;;chr5:321810..321877,+!p1@AHRR!0.95!25.66!AHRR;;chr19:24097706..24097731,+!p2@ZNF726!0.95!15.32!ZNF726;;chr11:47400045..47400060,-!p6@SPI1!0.95!7.85!SPI1;;chr6:126240463..126240489,+!p6@NCOA7!0.94!8.81!NCOA7;;chr7:50343634..50343717,+!p2@IKZF1!0.93!7.47!IKZF1;;chr3:114819101..114819121,-!p7@ZBTB20!0.92!7.28!ZBTB20;;chr6:126240380..126240430,+!p2@NCOA7!0.91!19.15!NCOA7;;chr19:12203100..12203132,+!p1@ZNF788!0.91!14.94!ZNF788;;chr3:18486354..18486377,-!p2@SATB1!0.91!9.00!SATB1;;chr4:57522753..57522760,-!p18@HOPX!0.91!7.09!HOPX;;chr2:192015750..192015793,-!p2@STAT4!0.90!9.58!STAT4;;chr19:20188776..20188826,+!p1@ZNF90!0.89!18.77!ZNF90;;chr20:50159198..50159299,-!p1@NFATC2!0.88!9.96!NFATC2;;chr2:208031943..208031978,-!p5@KLF7!0.87!8.81!KLF7;;chr11:128563948..128564003,+!p1@FLI1!0.86!79.09!FLI1;;chr17:1959369..1959388,+!p2@HIC1!0.86!17.04!HIC1;;chr19:36391434..36391450,-!p1@NFKBID!0.86!12.83!NFKBID;;chr19:13213704..13213726,-!p3@LYL1!0.86!8.43!LYL1;;chr7:115670804..115670825,-!p1@TFEC!0.86!6.32!TFEC;;chr7:128577972..128578047,+!p1@IRF5!0.85!9.96!IRF5;;chr17:46622114..46622138,-!p4@HOXB2!0.85!9.58!HOXB2;;chr4:57522166..57522260,-!p2@HOPX!0.85!7.09!HOPX;;chr8:60031563..60031574,-!p7@TOX!0.85!6.13!TOX;;chr22:29196547..29196563,-!p2@XBP1!0.84!231.15!XBP1;;chr6:20402102..20402152,+!p1@E2F3!0.84!25.66!E2F3;;chr5:88179017..88179046,-!p2@MEF2C!0.84!25.28!MEF2C;;chr19:11959532..11959593,+!p1@ZNF439!0.84!23.94!ZNF439;;chr7:149470641..149470694,-!p1@ZNF467!0.83!27.58!ZNF467;;chr6:15246200..15246214,+!p2@JARID2!0.83!16.66!JARID2;;chr19:13213555..13213568,-!p5@LYL1!0.83!5.75!LYL1;;chr1:92949331..92949377,-!p2@GFI1!0.83!5.75!GFI1;;chr3:128212033..128212051,-!p1@GATA2!0.83!5.75!GATA2;;chr3:63953435..63953499,+!p1@ATXN7!0.83!5.75!ATXN7;;chr9:20382446..20382493,-!p4@MLLT3!0.83!5.75!MLLT3;;chr9:117150254..117150271,-!p1@AKNA!0.82!16.09!AKNA;;chr6:126240442..126240459,+!p4@NCOA7!0.82!7.28!NCOA7;;chr19:21106081..21106115,+!p2@ZNF85!0.80!16.85!ZNF85;;chr2:192015701..192015743,-!p1@STAT4!0.80!7.47!STAT4;;chr4:57522701..57522712,-!p10@HOPX!0.80!5.36!HOPX;;chr10:94451574..94451587,+!p6@HHEX!0.79!5.17!HHEX;;chr4:81118647..81118666,+!p1@PRDM8!0.78!6.89!PRDM8;;chr6:135502472..135502489,+!p3@MYB!0.78!4.98!MYB;;chr6:391743..391759,+!p1@IRF4!0.78!4.98!IRF4;;chr17:46622175..46622186,-!p12@HOXB2!0.78!4.98!HOXB2;;chr19:45579725..45579743,-!p1@ZNF296!0.77!23.75!ZNF296;;chr19:24097675..24097699,+!p1@ZNF726!0.77!17.43!ZNF726;;chr3:128206762..128206781,-!p2@GATA2!0.76!32.56!GATA2;;chr2:60780607..60780624,-!p2@BCL11A!0.76!15.89!BCL11A;;chr3:71355163..71355209,-!p5@FOXP1!0.76!6.89!FOXP1;;chr17:46622440..46622477,-!p5@HOXB2!0.76!5.36!HOXB2;;chr7:50348268..50348366,+!p4@IKZF1!0.76!4.79!IKZF1;;chr19:22034809..22034878,-!p2@ZNF43!0.75!17.81!ZNF43;;chr3:44626446..44626477,+!p1@ZNF660!0.75!8.81!ZNF660;;chr12:54785074..54785122,-!p2@ZNF385A!0.75!7.47!ZNF385A;;chr19:53039233..53039247,+!p2@ZNF808!0.75!7.09!ZNF808;;chr17:40440481..40440550,+!p1@STAT5A!0.74!36.00!STAT5A;;chr19:19976683..19976709,+!p1@ZNF253!0.74!21.83!ZNF253;;chr17:46622070..46622109,-!p1@HOXB2!0.74!10.72!HOXB2;;chr19:23299814..23299844,+!p1@ZNF730!0.73!5.55!ZNF730;;chr16:88752861..88752884,-!p2@SNAI3!0.73!4.40!SNAI3;;chr17:46655672..46655697,-!p3@HOXB4!0.73!4.40!HOXB4;;chr17:42295682..42295731,-!p17@UBTF!0.72!4.21!UBTF;;chr17:61920280..61920343,-!p2@SMARCD2!0.71!44.81!SMARCD2;;chr14:74226961..74227020,-!p1@C14orf43!0.71!30.45!C14orf43;;chr19:23433144..23433204,-!p1@ZNF724P!0.71!20.49!ZNF724P;;chr17:53342311..53342400,+!p1@HLF!0.71!4.79!HLF;;chr19:12551785..12551823,-!p1@ZNF443!0.70!6.89!ZNF443;;chr22:29196492..29196503,-!p3@XBP1!0.70!6.51!XBP1;;chr8:60031534..60031553,-!p8@TOX!0.70!4.02!TOX;;chr7:64838786..64838809,+!p2@ZNF92!0.69!25.09!ZNF92;;chr17:1958388..1958404,+!p1@HIC1!0.68!27.39!HIC1;;chr1:153940354..153940395,+!p1@CREB3L4!0.68!17.43!CREB3L4;;chr19:21950332..21950356,-!p2@ZNF100!0.68!8.81!ZNF100;;chrY:2803415..2803468,+!p1@ZFY!0.68!3.83!ZFY;;chr21:40177845..40177863,+!p1@ETS2!0.67!251.26!ETS2;;chr18:45457423..45457468,-!p5@SMAD2!0.67!15.32!SMAD2;;chr19:12551824..12551846,-!p2@ZNF443!0.67!5.17!ZNF443;;chr19:20011731..20011743,+!p3@ZNF93!0.67!4.98!ZNF93;;chr14:75988831..75988847,+!p2@BATF!0.67!3.64!BATF;;chr2:102091566..102091581,-!p1@RFX8!0.67!3.64!RFX8;;chr11:19262421..19262455,-!p3@E2F8!0.67!3.64!E2F8;;chr17:41277372..41277418,-!p1@BRCA1!0.66!14.75!BRCA1;;chr19:23941680..23941704,-!p1@ZNF681!0.66!11.68!ZNF681;;chr19:23941647..23941672,-!p2@ZNF681!0.66!6.32!ZNF681;;chr3:141747459..141747475,-!p1@TFDP2!0.65!33.70!TFDP2;;chr14:55493763..55493824,-!p1@WDHD1!0.65!30.45!WDHD1;;chr19:53073532..53073551,+!p1@ZNF701!0.65!18.00!ZNF701;;chr1:33004996..33005017,+!p3@ZBTB8A!0.65!4.98!ZBTB8A;;chr18:45457909..45457939,-!p8@SMAD2!0.65!4.40!SMAD2;;chr19:22235310..22235319,+!p2@ZNF257!0.65!3.45!ZNF257;;chr7:63505799..63505904,+!p1@ZNF727!0.65!3.45!ZNF727;;chr1:25291475..25291511,-!p2@RUNX3!0.65!3.45!RUNX3;;chr10:51572339..51572376,+!p4@NCOA4!0.64!8.43!NCOA4;;chr19:20748574..20748599,-!p1@ZNF737!0.63!22.98!ZNF737;;chr17:46655704..46655718,-!p2@HOXB4!0.63!5.17!HOXB4;;chr21:36421347..36421380,-!p8@RUNX1!0.63!3.26!RUNX1;;chr2:60781201..60781258,-!p3@BCL11A!0.63!3.26!BCL11A;;chr3:168865250..168865272,-!p5@MECOM!0.63!3.26!MECOM;;chr7:27205175..27205184,-!p3@HOXA9!0.63!3.26!HOXA9;;chr12:96588368..96588394,+!p3@ELK3!0.62!9.77!ELK3;;chr17:46621937..46621966,-!p2@HOXB2!0.62!9.77!HOXB2;;chr9:127533519..127533573,-!p2@NR6A1!0.62!4.02!NR6A1;;chr12:54785054..54785072,-!p4@ZNF385A!0.62!3.64!ZNF385A;;chr1:149858461..149858479,+!p1@BOLA1!0.61!1472.68!BOLA1;;chr2:145277640..145277771,-!p1@ZEB2!0.61!49.03!ZEB2;;chr10:105110831..105110885,-!p1@PCGF6!0.61!35.24!PCGF6;;chr19:23869970..23869991,-!p1@ZNF675!0.61!13.60!ZNF675;;chr19:12405606..12405629,-!p2@ZNF44!0.61!6.70!ZNF44;;chr2:217277271..217277290,+!p3@SMARCAL1!0.61!5.36!SMARCAL1;;chr10:45496320..45496336,+!p3@ZNF22!0.61!3.06!ZNF22;;chr12:54694653..54694672,-!p2@NFE2!0.61!3.06!NFE2;;chr19:21106049..21106072,+!p1@ZNF85!0.60!19.53!ZNF85;;chr15:57511609..57511651,+!p2@TCF12!0.60!5.55!TCF12;;chr3:168865194..168865245,-!p3@MECOM!0.60!4.02!MECOM;;chr12:11802600..11802685,+!p1@ETV6!0.59!52.86!ETV6;;chr10:51572408..51572454,+!p3@NCOA4!0.59!20.49!NCOA4;;chr2:121493425..121493474,+!p1@GLI2!0.59!7.28!GLI2;;chr19:19976714..19976729,+!p3@ZNF253!0.59!6.13!ZNF253;;chr1:23857698..23857733,-!p1@E2F2!0.59!5.94!E2F2;;chr10:94449649..94449664,+!p3@HHEX!0.59!4.60!HHEX;;chr19:12163769..12163798,-!p1@ZNF878!0.59!4.02!ZNF878;;chr17:45810594..45810608,+!p1@TBX21!0.59!2.87!TBX21;;chr18:55102598..55102623,+!p1@ONECUT2!0.59!2.87!ONECUT2;;chr6:15246741..15246765,+!p9@JARID2!0.59!2.87!JARID2;;chr14:45722360..45722415,-!p1@MIS18BP1!0.58!54.00!MIS18BP1;;chr5:176738887..176738934,-!p1@MXD3!0.58!22.79!MXD3;;chr12:11802575..11802592,+!p6@ETV6!0.58!4.40!ETV6;;chr6:31126291..31126399,+!p1@TCF19!0.57!32.17!TCF19;;chr11:130184470..130184533,-!p2@ZBTB44!0.57!8.62!ZBTB44;;chr19:13213634..13213645,-!p8@LYL1!0.57!2.68!LYL1;;chrY:21906761..21906810,-!p2@KDM5D!0.57!2.68!KDM5D;;chr19:6110474..6110551,-!p1@RFX2!0.56!19.53!RFX2;;chr16:3313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:20403997..20404008,+!p7@E2F3!0.20!0.57!E2F3;;chr7:92076686..92076700,+!p3@GATAD1!0.20!0.57!GATAD1;;chr8:123793708..123793723,+!p6@ZHX2!0.20!0.57!ZHX2;;chr8:60031840..60031869,-!p5@TOX!0.20!0.57!TOX;;chr19:45972203..45972226,+!p5@FOSB!0.20!0.57!FOSB;;chr1:14026722..14026733,+!p5@PRDM2!0.20!0.57!PRDM2;;chr1:205649747..205649751,-!p10@ELK4,p4@SLC45A3!0.20!0.57!ELK4;;chr1:42384486..42384501,-!p6@HIVEP3!0.20!0.57!HIVEP3;;chr1:8763573..8763584,-!p30@RERE!0.20!0.57!RERE;;chr1:92950138..92950159,-!p4@GFI1!0.20!0.57!GFI1;;chr21:36421209..36421230,-!p24@RUNX1!0.20!0.57!RUNX1;;chr21:36421626..36421631,-!p31@RUNX1!0.20!0.57!RUNX1;;chrX:47696239..47696254,+!p3@ZNF81!0.20!0.57!ZNF81;;chrX:131623967..131623978,-!p11@MBNL3!0.20!0.57!MBNL3;;chr1:8938766..8938774,-!p2@ENO1!0.19!95.75!ENO1;;chr19:3572925..3573014,+!p1@HMG20B!0.19!40.41!HMG20B;;chr16:29817841..29817865,+!p1@MAZ!0.19!29.87!MAZ;;chr11:62369291..62369351,-!p1@MTA2!0.19!25.47!MTA2;;chr14:100705140..100705188,+!p2@YY1!0.19!19.53!YY1;;chr19:37663572..37663630,-!p1@ZNF585A!0.19!15.70!ZNF585A;;chr16:68119250..68119293,+!p2@NFATC3!0.19!10.34!NFATC3;;chr12:27485785..27485816,+!p1@ARNTL2!0.19!9.00!ARNTL2;;chr3:141868357..141868393,-!p3@TFDP2!0.19!8.62!TFDP2;;chr3:113415441..113415500,-!p1@KIAA2018!0.19!6.89!KIAA2018;;chr6:157100031..157100112,+!p2@ARID1B!0.19!6.89!ARID1B;;chr10:21823243..21823290,+!p2@MLLT10!0.19!5.36!MLLT10;;chr2:95831389..95831432,-!p1@ZNF514!0.19!5.36!ZNF514;;chr16:30569678..30569720,-!p1@ZNF764!0.19!4.21!ZNF764;;chr19:45252008..45252024,+!p2@BCL3!0.19!3.83!BCL3;;chr19:58220517..58220583,-!p1@ZNF154!0.19!3.64!ZNF154;;chr6:12008986..12009016,+!p3@HIVEP1!0.19!3.64!HIVEP1;;chr19:36705617..36705644,+!p4@ZNF146!0.19!3.26!ZNF146;;chr19:37958285..37958317,-!p3@ZNF569!0.19!2.87!ZNF569;;chr19:37329254..37329295,-!p1@ZNF790!0.19!2.68!ZNF790;;chr19:12035878..12035902,+!p2@ZNF700,p2@ZNF763!0.19!2.49!ZNF700;;chr6:7108855..7108903,+!p5@RREB1!0.19!2.30!RREB1;;chr12:72058102..72058127,+!p7@THAP2!0.19!1.72!THAP2;;chrX:70316005..70316034,+!p2@FOXO4!0.19!1.72!FOXO4;;chr19:35417798..35417842,+!p1@ZNF30!0.19!1.53!ZNF30;;chr3:71630690..71630750,-!p11@FOXP1!0.19!1.53!FOXP1;;chr6:21597514..21597578,+!p4@SOX4!0.19!1.53!SOX4;;chr10:31320840..31320859,-!p4@ZNF438!0.19!1.15!ZNF438;;chr21:36231861..36231877,-!p12@RUNX1!0.19!0.96!RUNX1;;chr6:21597431..21597447,+!p8@SOX4!0.19!0.96!SOX4;;chr8:60031809..60031835,-!p4@TOX!0.19!0.96!TOX;;chr11:47237922..47237964,+!p4@DDB2!0.19!0.77!DDB2;;chr19:19303794..19303805,+!p5@RFXANK!0.19!0.77!RFXANK;;chr4:81105027..81105039,+!p3@PRDM8!0.19!0.77!PRDM8;;chr19:6424813..6424835,-!p1@KHSRP!0.18!84.45!KHSRP;;chr1:226595741..226595818,-!p1@PARP1!0.18!70.09!PARP1;;chr17:7590797..7590815,-!p1@TP53!0.18!59.37!TP53;;chr22:41864662..41864708,-!p1@PHF5A!0.18!57.45!PHF5A;;chr11:85376121..85376181,-!p1@CREBZF!0.18!40.98!CREBZF;;chr19:57874835..57874966,+!p1@TRAPPC2P1,p1@TRAPPC2,p1@ZNF547!0.18!25.28!ZNF547;;chr2:113012592..113012671,-!p1@ZC3H8!0.18!22.60!ZC3H8;;chr12:498415..498492,-!p1@KDM5A!0.18!14.55!KDM5A;;chr1:151319710..151319774,-!p1@RFX5!0.18!12.83!RFX5;;chr19:44100728..44100804,+!p1@SRRM5,p1@ZNF576!0.18!12.64!ZNF576;;chr11:615942..615957,-!p1@IRF7!0.18!12.26!IRF7;;chr12:66218836..66218888,+!p1@HMGA2!0.18!12.06!HMGA2;;chr19:40562072..40562143,-!p1@ZNF780B!0.18!11.68!ZNF780B;;chr6:130339710..130339745,+!p1@L3MBTL3!0.18!10.15!L3MBTL3;;chr19:1592714..1592762,-!p1@MBD3!0.18!9.77!MBD3;;chr13:37393351..37393423,+!p1@RFXAP!0.18!9.58!RFXAP;;chr14:102786063..102786112,+!p1@ZNF839!0.18!9.19!ZNF839;;chr6:108880956..108881011,+!p1@FOXO3!0.18!8.43!FOXO3;;chr7:77428066..77428132,+!p2@PHTF2!0.18!8.23!PHTF2;;chr17:47439568..47439641,-!p2@ZNF652!0.18!7.09!ZNF652;;chr6:20403826..20403886,+!p2@E2F3!0.18!5.94!E2F3;;chr2:61108650..61108687,+!p2@REL!0.18!5.94!REL;;chr3:52719888..52719908,-!p2@PBRM1!0.18!5.75!PBRM1;;chr19:12595586..12595637,-!p2@ZNF709!0.18!4.79!ZNF709;;
Line 38: Line 41:
 
|fonse_treatment_closure=
 
|fonse_treatment_closure=
 
|has_quality=
 
|has_quality=
 +
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.LQhCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M0%2529%2520cell%2520line%253aKasumi-3.CNhs13241.10789-110H6.hg19.nobarcode.bam
 +
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.LQhCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M0%2529%2520cell%2520line%253aKasumi-3.CNhs13241.10789-110H6.hg19.ctss.bed.gz
 +
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.LQhCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M0%2529%2520cell%2520line%253aKasumi-3.CNhs13241.10789-110H6.hg19.nobarcode.rdna.fa.gz
 +
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.LQhCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M0%2529%2520cell%2520line%253aKasumi-3.CNhs13241.10789-110H6.hg38.nobarcode.bam
 +
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.LQhCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M0%2529%2520cell%2520line%253aKasumi-3.CNhs13241.10789-110H6.hg38.nobarcode.ctss.bed.gz
 
|id=FF:10789-110H6
 
|id=FF:10789-110H6
 
|is_a=EFO:0002091;;FF:0000210;;FF:0101883
 
|is_a=EFO:0002091;;FF:0000210;;FF:0101883
 
|is_obsolete=
 
|is_obsolete=
 +
|library_id=CNhs13241
 +
|library_id_phase_based=2:CNhs13241
 +
|microRNAs=
 +
|microRNAs_nn=
 +
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10789
 +
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10789
 
|name=acute myeloid leukemia (FAB M0) cell line:Kasumi-3
 
|name=acute myeloid leukemia (FAB M0) cell line:Kasumi-3
 
|namespace=FANTOM5
 
|namespace=FANTOM5
Line 46: Line 60:
 
|profile_cagescan=,,,
 
|profile_cagescan=,,,
 
|profile_hcage=CNhs13241,LSID1006,release012,COMPLETED
 
|profile_hcage=CNhs13241,LSID1006,release012,COMPLETED
|profile_rnaseq=,,,
+
|profile_rnaseq=
 
|profile_srnaseq=,,,
 
|profile_srnaseq=,,,
 +
|refex=http://refex.dbcls.jp/genelist.php?lang
 
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Line 85: Line 100:
 
|top_motifs=E2F1..5:1.72644628951;ELF1,2,4:1.5470790401;MYB:1.47095167978;STAT1,3:1.46768205428;YY1:1.43837295917;ARID5B:1.42256706282;SPIB:1.33171578644;NANOG:1.26017295839;RUNX1..3:1.23696727344;NFY{A,B,C}:1.19768065865;GATA6:1.18223155653;FOXP3:1.17785967897;NANOG{mouse}:1.16038899618;DMAP1_NCOR{1,2}_SMARC:1.10989931382;TLX2:1.1019163969;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.05893912812;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.03485394892;ALX1:0.976737334392;PBX1:0.926528801323;SPI1:0.899294291914;FOXA2:0.846911461129;NR5A1,2:0.841498517118;ETS1,2:0.822974328971;POU2F1..3:0.790226726768;ZNF143:0.773457099386;ELK1,4_GABP{A,B1}:0.728802522007;HBP1_HMGB_SSRP1_UBTF:0.670158188981;NKX2-3_NKX2-5:0.516068899093;HAND1,2:0.513670726429;TGIF1:0.49665591752;FOX{I1,J2}:0.492531958703;IKZF2:0.438985237887;CDX1,2,4:0.402976955284;NRF1:0.377399473027;NR6A1:0.352033984642;NKX2-2,8:0.345252039918;MYOD1:0.292236199357;CUX2:0.285006449967;RORA:0.280048959313;SREBF1,2:0.279878368203;POU5F1:0.240869680139;OCT4_SOX2{dimer}:0.234006669533;ESRRA:0.228382959418;POU3F1..4:0.214174337437;FOXQ1:0.186644990752;SOX5:0.186547521162;ZNF148:0.173071220678;RXR{A,B,G}:0.163982834436;SOX{8,9,10}:0.16232864047;PAX4:0.138989894156;GFI1:0.13868842773;PAX8:0.128952558283;PAX5:0.12772601478;VSX1,2:0.0800736851521;BREu{core}:0.0785892427799;IRF1,2:0.0719360226605;CRX:0.0715026850251;HOX{A6,A7,B6,B7}:0.041614577457;PAX6:0.0342217863721;IRF7:0.0291442118478;BPTF:0.0253762323494;NFKB1_REL_RELA:0.0154440582777;HMGA1,2:0.0124336477448;RXRA_VDR{dimer}:0.00308859924423;PAX2:-0.00264120319811;DBP:-0.0320471280627;STAT5{A,B}:-0.033496468357;EN1,2:-0.0337891851719;PPARG:-0.0371878309052;GCM1,2:-0.038313564206;LHX3,4:-0.0396695140688;T:-0.0645928702216;HOXA9_MEIS1:-0.0894966814365;PAX3,7:-0.0901712460779;ZEB1:-0.10646723143;RFX2..5_RFXANK_RFXAP:-0.112975915721;TEF:-0.114115259049;ATF5_CREB3:-0.144960540025;ESR1:-0.149761916279;NFIL3:-0.162354957005;ZNF238:-0.166934924656;SOX17:-0.168925845447;GZF1:-0.173052908445;MEF2{A,B,C,D}:-0.180613416237;ONECUT1,2:-0.190028555843;HNF4A_NR2F1,2:-0.191367672017;NFE2:-0.208548526316;HNF1A:-0.211669633408;TFDP1:-0.213805623091;SNAI1..3:-0.247260347097;FOXM1:-0.256751275432;HIF1A:-0.260585364118;HES1:-0.276387613836;NFIX:-0.279078565008;AR:-0.28143110824;FOX{F1,F2,J1}:-0.281995187703;CEBPA,B_DDIT3:-0.291139061319;FOSL2:-0.304852722251;NFATC1..3:-0.308317920795;HSF1,2:-0.311740937257;STAT2,4,6:-0.321795593153;FOXN1:-0.343316797934;LEF1_TCF7_TCF7L1,2:-0.378331197439;CREB1:-0.39053311463;REST:-0.396796997642;PDX1:-0.399098889781;MYBL2:-0.403478731261;RBPJ:-0.407729555558;TFAP4:-0.409637328066;PRRX1,2:-0.418868062307;TBP:-0.426775593027;SMAD1..7,9:-0.430269784105;FOX{D1,D2}:-0.444173549516;AHR_ARNT_ARNT2:-0.446487768401;TAL1_TCF{3,4,12}:-0.450064876594;BACH2:-0.459338541472;NKX3-1:-0.471146267709;SOX2:-0.473806754931;PRDM1:-0.480697106089;FOS_FOS{B,L1}_JUN{B,D}:-0.490926062805;SPZ1:-0.497828648485;RFX1:-0.498449313254;PITX1..3:-0.504260128354;NFE2L1:-0.505787995908;HOX{A4,D4}:-0.51727768758;HLF:-0.529690959479;XBP1:-0.543738300324;ATF4:-0.58412018155;EP300:-0.593720499743;SRF:-0.606897843528;bHLH_family:-0.611679872431;ZNF384:-0.61824663316;FOXP1:-0.620594448601;GTF2I:-0.631047485936;ZBTB16:-0.640697773934;NFE2L2:-0.644346474468;KLF4:-0.676723053528;HIC1:-0.686178102346;EBF1:-0.700381602214;TOPORS:-0.712987282028;MYFfamily:-0.716596710827;MAFB:-0.737893310313;NR1H4:-0.752747366715;ATF2:-0.759398803672;NHLH1,2:-0.789101702813;FOXD3:-0.789660306623;FOXO1,3,4:-0.818725906722;XCPE1{core}:-0.842951666044;TP53:-0.864908304815;LMO2:-0.866885032712;POU1F1:-0.871354207915;ZNF423:-0.877893656527;ZBTB6:-0.903755155498;SP1:-0.905832520044;GLI1..3:-0.913034204285;TFAP2B:-0.915092188593;NKX6-1,2:-0.918697259237;GATA4:-0.936071372739;HOX{A5,B5}:-0.939903471493;UFEwm:-0.940486651641;IKZF1:-0.948392102963;MAZ:-0.949323168039;NKX2-1,4:-0.98026781202;MZF1:-0.984810504822;EVI1:-0.996099012323;HMX1:-1.00043956642;TFAP2{A,C}:-1.00084096764;NKX3-2:-1.00128308488;CDC5L:-1.00504880086;PAX1,9:-1.06953518126;GTF2A1,2:-1.07900962589;GFI1B:-1.08834867408;MTE{core}:-1.09454653703;ZFP161:-1.10131550727;JUN:-1.11088676589;ZIC1..3:-1.11453401226;TLX1..3_NFIC{dimer}:-1.13103203557;TEAD1:-1.16761279955;AIRE:-1.19282633133;EGR1..3:-1.2004231903;MTF1:-1.20899467838;RREB1:-1.29930551115;MED-1{core}:-1.36477340008;TBX4,5:-1.37378231996;POU6F1:-1.39147705606;ALX4:-1.4152752045;ATF6:-1.4166443021;PATZ1:-1.42955327316;NR3C1:-1.52428097105;ADNP_IRX_SIX_ZHX:-1.62059277327;TFCP2:-1.63480449481;FOXL1:-2.21198275551
 
|top_motifs=E2F1..5:1.72644628951;ELF1,2,4:1.5470790401;MYB:1.47095167978;STAT1,3:1.46768205428;YY1:1.43837295917;ARID5B:1.42256706282;SPIB:1.33171578644;NANOG:1.26017295839;RUNX1..3:1.23696727344;NFY{A,B,C}:1.19768065865;GATA6:1.18223155653;FOXP3:1.17785967897;NANOG{mouse}:1.16038899618;DMAP1_NCOR{1,2}_SMARC:1.10989931382;TLX2:1.1019163969;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.05893912812;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.03485394892;ALX1:0.976737334392;PBX1:0.926528801323;SPI1:0.899294291914;FOXA2:0.846911461129;NR5A1,2:0.841498517118;ETS1,2:0.822974328971;POU2F1..3:0.790226726768;ZNF143:0.773457099386;ELK1,4_GABP{A,B1}:0.728802522007;HBP1_HMGB_SSRP1_UBTF:0.670158188981;NKX2-3_NKX2-5:0.516068899093;HAND1,2:0.513670726429;TGIF1:0.49665591752;FOX{I1,J2}:0.492531958703;IKZF2:0.438985237887;CDX1,2,4:0.402976955284;NRF1:0.377399473027;NR6A1:0.352033984642;NKX2-2,8:0.345252039918;MYOD1:0.292236199357;CUX2:0.285006449967;RORA:0.280048959313;SREBF1,2:0.279878368203;POU5F1:0.240869680139;OCT4_SOX2{dimer}:0.234006669533;ESRRA:0.228382959418;POU3F1..4:0.214174337437;FOXQ1:0.186644990752;SOX5:0.186547521162;ZNF148:0.173071220678;RXR{A,B,G}:0.163982834436;SOX{8,9,10}:0.16232864047;PAX4:0.138989894156;GFI1:0.13868842773;PAX8:0.128952558283;PAX5:0.12772601478;VSX1,2:0.0800736851521;BREu{core}:0.0785892427799;IRF1,2:0.0719360226605;CRX:0.0715026850251;HOX{A6,A7,B6,B7}:0.041614577457;PAX6:0.0342217863721;IRF7:0.0291442118478;BPTF:0.0253762323494;NFKB1_REL_RELA:0.0154440582777;HMGA1,2:0.0124336477448;RXRA_VDR{dimer}:0.00308859924423;PAX2:-0.00264120319811;DBP:-0.0320471280627;STAT5{A,B}:-0.033496468357;EN1,2:-0.0337891851719;PPARG:-0.0371878309052;GCM1,2:-0.038313564206;LHX3,4:-0.0396695140688;T:-0.0645928702216;HOXA9_MEIS1:-0.0894966814365;PAX3,7:-0.0901712460779;ZEB1:-0.10646723143;RFX2..5_RFXANK_RFXAP:-0.112975915721;TEF:-0.114115259049;ATF5_CREB3:-0.144960540025;ESR1:-0.149761916279;NFIL3:-0.162354957005;ZNF238:-0.166934924656;SOX17:-0.168925845447;GZF1:-0.173052908445;MEF2{A,B,C,D}:-0.180613416237;ONECUT1,2:-0.190028555843;HNF4A_NR2F1,2:-0.191367672017;NFE2:-0.208548526316;HNF1A:-0.211669633408;TFDP1:-0.213805623091;SNAI1..3:-0.247260347097;FOXM1:-0.256751275432;HIF1A:-0.260585364118;HES1:-0.276387613836;NFIX:-0.279078565008;AR:-0.28143110824;FOX{F1,F2,J1}:-0.281995187703;CEBPA,B_DDIT3:-0.291139061319;FOSL2:-0.304852722251;NFATC1..3:-0.308317920795;HSF1,2:-0.311740937257;STAT2,4,6:-0.321795593153;FOXN1:-0.343316797934;LEF1_TCF7_TCF7L1,2:-0.378331197439;CREB1:-0.39053311463;REST:-0.396796997642;PDX1:-0.399098889781;MYBL2:-0.403478731261;RBPJ:-0.407729555558;TFAP4:-0.409637328066;PRRX1,2:-0.418868062307;TBP:-0.426775593027;SMAD1..7,9:-0.430269784105;FOX{D1,D2}:-0.444173549516;AHR_ARNT_ARNT2:-0.446487768401;TAL1_TCF{3,4,12}:-0.450064876594;BACH2:-0.459338541472;NKX3-1:-0.471146267709;SOX2:-0.473806754931;PRDM1:-0.480697106089;FOS_FOS{B,L1}_JUN{B,D}:-0.490926062805;SPZ1:-0.497828648485;RFX1:-0.498449313254;PITX1..3:-0.504260128354;NFE2L1:-0.505787995908;HOX{A4,D4}:-0.51727768758;HLF:-0.529690959479;XBP1:-0.543738300324;ATF4:-0.58412018155;EP300:-0.593720499743;SRF:-0.606897843528;bHLH_family:-0.611679872431;ZNF384:-0.61824663316;FOXP1:-0.620594448601;GTF2I:-0.631047485936;ZBTB16:-0.640697773934;NFE2L2:-0.644346474468;KLF4:-0.676723053528;HIC1:-0.686178102346;EBF1:-0.700381602214;TOPORS:-0.712987282028;MYFfamily:-0.716596710827;MAFB:-0.737893310313;NR1H4:-0.752747366715;ATF2:-0.759398803672;NHLH1,2:-0.789101702813;FOXD3:-0.789660306623;FOXO1,3,4:-0.818725906722;XCPE1{core}:-0.842951666044;TP53:-0.864908304815;LMO2:-0.866885032712;POU1F1:-0.871354207915;ZNF423:-0.877893656527;ZBTB6:-0.903755155498;SP1:-0.905832520044;GLI1..3:-0.913034204285;TFAP2B:-0.915092188593;NKX6-1,2:-0.918697259237;GATA4:-0.936071372739;HOX{A5,B5}:-0.939903471493;UFEwm:-0.940486651641;IKZF1:-0.948392102963;MAZ:-0.949323168039;NKX2-1,4:-0.98026781202;MZF1:-0.984810504822;EVI1:-0.996099012323;HMX1:-1.00043956642;TFAP2{A,C}:-1.00084096764;NKX3-2:-1.00128308488;CDC5L:-1.00504880086;PAX1,9:-1.06953518126;GTF2A1,2:-1.07900962589;GFI1B:-1.08834867408;MTE{core}:-1.09454653703;ZFP161:-1.10131550727;JUN:-1.11088676589;ZIC1..3:-1.11453401226;TLX1..3_NFIC{dimer}:-1.13103203557;TEAD1:-1.16761279955;AIRE:-1.19282633133;EGR1..3:-1.2004231903;MTF1:-1.20899467838;RREB1:-1.29930551115;MED-1{core}:-1.36477340008;TBX4,5:-1.37378231996;POU6F1:-1.39147705606;ALX4:-1.4152752045;ATF6:-1.4166443021;PATZ1:-1.42955327316;NR3C1:-1.52428097105;ADNP_IRX_SIX_ZHX:-1.62059277327;TFCP2:-1.63480449481;FOXL1:-2.21198275551
 
|xref=
 
|xref=
 +
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10789-110H6;search_select_hide=table117:FF:10789-110H6
 
}}
 
}}

Latest revision as of 06:04, 3 June 2020

Name:acute myeloid leukemia (FAB M0) cell line:Kasumi-3
Species:Human (Homo sapiens)
Library ID:CNhs13241
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexmale
age57
cell typemyeloid progenitor cell
cell lineKasumi-3
companyJAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005659
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13241 CAGE DRX007772 DRR008644
Accession ID Hg19

Library idBAMCTSS
CNhs13241 DRZ000069 DRZ001454
Accession ID Hg38

Library idBAMCTSS
CNhs13241 DRZ011419 DRZ012804
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis--0.0384
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
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C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs13241

Jaspar motif P-value
MA0002.2 4.37189e-5
MA0003.1 0.259
MA0004.1 0.116
MA0006.1 0.393
MA0007.1 0.936
MA0009.1 0.126
MA0014.1 0.313
MA0017.1 0.00969
MA0018.2 0.093
MA0019.1 0.851
MA0024.1 2.32026e-7
MA0025.1 0.344
MA0027.1 0.167
MA0028.1 7.51645e-6
MA0029.1 0.612
MA0030.1 0.279
MA0031.1 0.96
MA0035.2 0.00184
MA0038.1 0.345
MA0039.2 0.553
MA0040.1 0.59
MA0041.1 0.316
MA0042.1 0.497
MA0043.1 0.941
MA0046.1 0.565
MA0047.2 0.512
MA0048.1 0.357
MA0050.1 0.0138
MA0051.1 0.173
MA0052.1 0.0987
MA0055.1 0.00712
MA0057.1 0.559
MA0058.1 0.00702
MA0059.1 0.00794
MA0060.1 1.42782e-9
MA0061.1 0.1
MA0062.2 3.20289e-13
MA0065.2 0.00463
MA0066.1 0.376
MA0067.1 0.728
MA0068.1 0.778
MA0069.1 0.04
MA0070.1 0.703
MA0071.1 0.0658
MA0072.1 0.447
MA0073.1 0.536
MA0074.1 0.931
MA0076.1 3.17153e-8
MA0077.1 0.658
MA0078.1 0.487
MA0079.2 0.498
MA0080.2 3.50931e-15
MA0081.1 1.40885e-4
MA0083.1 0.00755
MA0084.1 0.85
MA0087.1 0.76
MA0088.1 0.00301
MA0090.1 2.72378e-4
MA0091.1 0.771
MA0092.1 0.822
MA0093.1 0.0528
MA0099.2 0.00942
MA0100.1 4.04343e-5
MA0101.1 0.427
MA0102.2 0.105
MA0103.1 0.893
MA0104.2 0.0102
MA0105.1 0.00114
MA0106.1 0.736
MA0107.1 0.76
MA0108.2 0.00151
MA0111.1 0.868
MA0112.2 0.0838
MA0113.1 0.657
MA0114.1 0.0209
MA0115.1 0.0182
MA0116.1 1.00229e-4
MA0117.1 0.945
MA0119.1 0.811
MA0122.1 0.279
MA0124.1 0.322
MA0125.1 0.926
MA0131.1 0.221
MA0135.1 0.379
MA0136.1 2.65594e-24
MA0137.2 0.072
MA0138.2 0.406
MA0139.1 0.673
MA0140.1 4.37643e-4
MA0141.1 0.104
MA0142.1 0.489
MA0143.1 0.519
MA0144.1 0.273
MA0145.1 0.435
MA0146.1 0.0281
MA0147.1 0.011
MA0148.1 0.661
MA0149.1 0.193
MA0150.1 0.603
MA0152.1 0.532
MA0153.1 0.0183
MA0154.1 0.0231
MA0155.1 0.852
MA0156.1 2.26853e-21
MA0157.1 0.801
MA0159.1 0.681
MA0160.1 0.00226
MA0162.1 0.539
MA0163.1 5.25714e-16
MA0164.1 0.676
MA0258.1 0.182
MA0259.1 0.128



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs13241

Novel motif P-value
1 0.37
10 0.032
100 0.993
101 0.613
102 0.393
103 0.0127
104 0.467
105 0.518
106 0.786
107 0.304
108 0.253
109 0.0322
11 0.0374
110 0.217
111 0.617
112 0.351
113 0.674
114 0.31
115 0.457
116 0.847
117 0.0272
118 0.0216
119 0.653
12 0.463
120 0.406
121 0.647
122 0.361
123 0.524
124 0.0583
125 0.123
126 0.115
127 0.177
128 0.815
129 0.216
13 0.0014
130 0.0524
131 0.22
132 0.468
133 0.731
134 0.833
135 0.468
136 0.119
137 0.153
138 0.796
139 0.944
14 0.98
140 0.416
141 0.624
142 0.547
143 0.414
144 0.246
145 0.858
146 0.51
147 0.0112
148 0.845
149 0.886
15 0.105
150 0.339
151 0.878
152 0.81
153 0.221
154 0.544
155 0.257
156 0.361
157 0.358
158 0.827
159 0.487
16 0.913
160 0.396
161 0.063
162 0.263
163 0.534
164 0.544
165 0.263
166 0.205
167 0.447
168 0.755
169 0.406
17 0.973
18 0.361
19 0.871
2 0.797
20 0.54
21 0.794
22 0.419
23 0.00686
24 0.0207
25 0.0242
26 0.152
27 0.25
28 0.97
29 0.0573
3 0.0201
30 0.309
31 0.33
32 0.0288
33 0.0939
34 0.528
35 0.29
36 0.0446
37 0.115
38 0.458
39 0.225
4 0.0966
40 0.0273
41 0.718
42 0.0581
43 0.452
44 0.611
45 0.921
46 0.17
47 0.0153
48 0.0202
49 0.322
5 0.831
50 0.897
51 0.729
52 0.344
53 0.305
54 0.538
55 0.813
56 0.828
57 0.538
58 0.188
59 0.229
6 0.816
60 0.606
61 0.136
62 0.228
63 0.953
64 0.191
65 0.47
66 0.00443
67 0.913
68 0.526
69 0.755
7 0.00176
70 0.215
71 0.0142
72 0.465
73 0.276
74 0.704
75 0.0112
76 0.276
77 0.686
78 0.00401
79 0.0233
8 0.264
80 0.358
81 0.974
82 0.883
83 0.0358
84 0.8
85 0.399
86 0.497
87 0.0259
88 0.324
89 0.81
9 0.141
90 0.283
91 0.863
92 0.0791
93 0.178
94 0.763
95 7.02915e-5
96 0.608
97 0.56
98 0.39
99 0.384



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs13241


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
8692 (myeloid leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0101883 (acute myeloid leukemia cell line sample)
0100740 (myeloid leukemia cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)