Personal tools

Difference between revisions of "FF:10815-111B5"

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{f5samples |id=FF:10815-111B5 |name=epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep1 |sample_id=10815 |rna_tube_id=111B5 |rna_box=111 |rna_position=B5 |sample_...")
 
Line 20: Line 20:
 
|sample_ethnicity=
 
|sample_ethnicity=
 
|rna_rin=
 
|rna_rin=
|rna_od260/230=2.13000
+
|rna_od260/230=2.13
|rna_od260/280=2.02000
+
|rna_od260/280=2.02
 
|sample_cell_type=epithelial cell
 
|sample_cell_type=epithelial cell
 
|sample_cell_line=HelaS3
 
|sample_cell_line=HelaS3
|sample_collaboration=Carrie Davis (Cold spring Harbor Laboratories)  
+
|sample_collaboration=Carrie Davis (Cold spring Harbor Laboratories)
 
|sample_experimental_condition=
 
|sample_experimental_condition=
 
|sample_disease=
 
|sample_disease=
 
|rna_sample_type=total RNA
 
|rna_sample_type=total RNA
 
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
 
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=38.29550
+
|rna_weight_ug=38.2955
 
|rna_concentration=0.76591
 
|rna_concentration=0.76591
 
|sample_note=
 
|sample_note=
Line 40: Line 40:
 
|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:305,DOID:4
 
|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:305,DOID:4
 
|sample_description=
 
|sample_description=
 
 
|fonse_cell_line=FF:0101120
 
|fonse_cell_line=FF:0101120
 
|fonse_cell_line_closure=FF:0101120
 
|fonse_cell_line_closure=FF:0101120
Line 67: Line 66:
 
|fonse_treatment=
 
|fonse_treatment=
 
|fonse_treatment_closure=
 
|fonse_treatment_closure=
 +
|top_motifs=
 
}}
 
}}

Revision as of 08:36, 27 February 2012


Name:epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep1
Species:
Library ID:{{{library_id}}}
Sample type:{{{sample_category}}}
Additional information
Sample information
strainNA
tissuecervix
dev stageNA
sexfemale
ageNA
cell typeepithelial cell
cell lineHelaS3
companyNA
collaborationCarrie Davis (Cold spring Harbor Laboratories)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0



FANTOM5 (FF) ontology


Direct parent terms

is_a relathionship
{{{is_a}}}

part_of relathionship
{{{part_of}}}

has_quality relathionship
{{{has_quality}}}

Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000034 (stem cell)
0000037 (hematopoietic stem cell)
0000040 (monoblast)
0000048 (multi fate stem cell)
0000049 (common myeloid progenitor)
0000066 (epithelial cell)
0000134 (mesenchymal cell)
0000219 (motile cell)
0000235 (macrophage)
0000255 (eukaryotic cell)
0000548 (animal cell)
0000557 (granulocyte monocyte progenitor cell)
0000559 (promonocyte)
0000566 (angioblastic mesenchymal cell)
0000576 (monocyte)
0000723 (somatic stem cell)
0000738 (leukocyte)
0000763 (myeloid cell)
0000766 (myeloid leukocyte)
0000837 (hematopoietic multipotent progenitor cell)
0000839 (myeloid lineage restricted progenitor cell)
0000860 (classical monocyte)
0000988 (hematopoietic cell)
0001012 (CD7-negative lymphoid progenitor OR granulocyte monocyte progenitor)
0002009 (macrophage dendritic cell progenitor)
0002031 (hematopoietic lineage restricted progenitor cell)
0002032 (hematopoietic oligopotent progenitor cell)
0002087 (nongranular leukocyte)
0002194 (monopoietic cell)
0002320 (connective tissue cell)
0002371 (somatic cell)

DOID: Disease
0050687 (cell type cancer)
14566 (disease of cellular proliferation)
162 (cancer)
305 (carcinoma)
4 (disease)

UBERON: Anatomy
0000061 (anatomical structure)
0000062 (organ)
0000465 (material anatomical entity)
0000467 (anatomical system)
0000468 (multi-cellular organism)
0000479 (tissue)
0000480 (anatomical group)
0000922 (embryo)
0000923 (germ layer)
0000926 (mesoderm)
0001062 (anatomical entity)
0001434 (skeletal system)
0001474 (bone element)
0002050 (embryonic structure)
0002193 (hemolymphoid system)
0002204 (musculoskeletal system)
0002371 (bone marrow)
0002384 (connective tissue)
0002390 (hematopoietic system)
0002405 (immune system)
0002532 (epiblast (generic))
0004120 (mesoderm-derived structure)
0004765 (skeletal element)
0005423 (developing anatomical structure)

FF: FANTOM5
NA

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA