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Difference between revisions of "FF:10819-111B9"

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|has_quality=
 
|has_quality=
 
|id=FF:10819-111B9
 
|id=FF:10819-111B9
|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0100599
+
|is_a=EFO:0002091;;FF:0000210;;FF:0100599
 +
|is_obsolete=
 
|name=hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep2
 
|name=hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep2
 
|namespace=FANTOM5
 
|namespace=FANTOM5
Line 77: Line 78:
 
|sample_tissue=liver
 
|sample_tissue=liver
 
|top_motifs=HNF4A_NR2F1,2:4.60320277255;HNF1A:3.93152016869;RXR{A,B,G}_{NR1H2,PPAR}dimers:3.53141945589;FOXA2:3.21676503488;bHLH_family:2.08312545111;LEF1_TCF7_TCF7L1,2:2.06884496105;FOX{F1,F2,J1}:1.72727329736;NFY{A,B,C}:1.63943330713;NR1H4:1.58400182729;E2F1..5:1.45016536368;ONECUT1,2:1.39297635698;NR6A1:1.36037476294;ELK1,4_GABP{A,B1}:1.2911821517;YY1:1.24461136798;ADNP_IRX_SIX_ZHX:1.21526252449;PBX1:1.18899925622;ZNF143:1.18285456087;SOX{8,9,10}:0.958778491269;EN1,2:0.923965858727;SNAI1..3:0.898935255447;GFI1:0.890295818172;NRF1:0.866043291643;PAX3,7:0.817946991728;AIRE:0.794749281272;RORA:0.775314185763;NR5A1,2:0.713987738809;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.691030038172;FOXM1:0.689163936535;NKX3-2:0.675244916699;ZEB1:0.670763427514;MYB:0.626637189883;TFDP1:0.616820623376;FOXD3:0.561029603462;LHX3,4:0.550882231055;CEBPA,B_DDIT3:0.526569210065;RXRA_VDR{dimer}:0.515421384131;SOX2:0.500725863145;ALX4:0.469314298392;EBF1:0.428286389857;ESRRA:0.42796250179;PPARG:0.419999419709;TP53:0.402955558967;POU6F1:0.388569022481;NFIL3:0.353062439508;FOX{D1,D2}:0.326673662771;XCPE1{core}:0.305363649521;MYOD1:0.304989781692;AR:0.293630171918;HIC1:0.265100248614;UFEwm:0.257091260043;HLF:0.251839939794;CUX2:0.201604334201;ELF1,2,4:0.190179821635;GATA6:0.124480330166;MTE{core}:0.102806015159;STAT5{A,B}:0.0865402799153;PAX1,9:0.0824005123498;BREu{core}:0.0812208059745;ARID5B:0.0700803405614;TOPORS:0.069216640457;DBP:0.0510210124415;PITX1..3:0.0225483680782;SP1:0.012860639234;EVI1:-0.00262288329889;MAZ:-0.00358231330202;POU3F1..4:-0.0317362974368;PAX4:-0.03595937989;ZFP161:-0.0647003954002;RBPJ:-0.0688615418112;RXR{A,B,G}:-0.0819690639496;HOXA9_MEIS1:-0.0958807107927;TFCP2:-0.0970751573571;STAT2,4,6:-0.102652183197;PAX2:-0.127898834739;TFAP2{A,C}:-0.127963122576;SREBF1,2:-0.128302823803;TBX4,5:-0.130429769546;NFKB1_REL_RELA:-0.143525425295;SOX17:-0.144601348087;KLF4:-0.175064652198;FOXQ1:-0.199807546757;MTF1:-0.206737832645;NKX3-1:-0.225221208237;IKZF2:-0.227517240843;FOXP1:-0.236032373188;TAL1_TCF{3,4,12}:-0.239671287465;SOX5:-0.246505924481;T:-0.255856838122;PATZ1:-0.255930481384;TEAD1:-0.268152938014;LMO2:-0.278988186376;FOXN1:-0.280576332007;GLI1..3:-0.286384558628;ZNF423:-0.292572481947;HOX{A4,D4}:-0.299914179511;AHR_ARNT_ARNT2:-0.304629415922;ATF5_CREB3:-0.31170245517;VSX1,2:-0.311872159982;CDC5L:-0.327901462635;OCT4_SOX2{dimer}:-0.341967754099;ATF6:-0.346022512582;HOX{A5,B5}:-0.346289743873;MED-1{core}:-0.361220750809;HES1:-0.374902481698;FOSL2:-0.392629755886;NFE2:-0.395638129988;ALX1:-0.405200113002;REST:-0.424037223231;ESR1:-0.427832418194;STAT1,3:-0.43859710743;HMGA1,2:-0.439402845707;IRF7:-0.441083079302;FOXO1,3,4:-0.453846789243;HOX{A6,A7,B6,B7}:-0.459181836366;NANOG{mouse}:-0.463906344124;NKX2-3_NKX2-5:-0.476046877341;TLX1..3_NFIC{dimer}:-0.496366347587;ZNF148:-0.498761694712;GATA4:-0.541751254673;NFE2L2:-0.545355558311;POU2F1..3:-0.547351316012;IKZF1:-0.547792827802;IRF1,2:-0.550832138254;FOS_FOS{B,L1}_JUN{B,D}:-0.560210321435;PAX8:-0.563474027726;GTF2A1,2:-0.568611795993;FOXP3:-0.579454368901;BACH2:-0.593035963088;CREB1:-0.601342277282;PAX5:-0.603295525252;CDX1,2,4:-0.619852778914;BPTF:-0.634784821938;DMAP1_NCOR{1,2}_SMARC:-0.637442692536;NR3C1:-0.638656947093;NKX6-1,2:-0.641697149146;SPI1:-0.650625821239;RFX2..5_RFXANK_RFXAP:-0.657187555346;SPIB:-0.667011374577;NFIX:-0.668451068185;RREB1:-0.677469317077;HSF1,2:-0.700777083583;ATF4:-0.704550936793;EGR1..3:-0.706522985006;TBP:-0.707218302131;TFAP2B:-0.723275079264;ZBTB16:-0.723318756013;POU5F1:-0.730556572177;PDX1:-0.755720942591;CRX:-0.774788952756;ATF2:-0.775910505455;NHLH1,2:-0.784871866831;XBP1:-0.792160057002;SRF:-0.812910955068;MYBL2:-0.815183219949;RUNX1..3:-0.825620426864;MEF2{A,B,C,D}:-0.83608777123;HAND1,2:-0.840453729078;JUN:-0.866818441091;GTF2I:-0.867347441112;RFX1:-0.876984722966;GCM1,2:-0.878233821313;NFE2L1:-0.898050213293;ZBTB6:-0.909799809911;NKX2-2,8:-0.912609315002;TFAP4:-0.932418014115;MYFfamily:-0.945177284026;MAFB:-0.986811783106;ZIC1..3:-1.0156843388;NKX2-1,4:-1.01585617117;GFI1B:-1.01876850975;PAX6:-1.06760529573;ETS1,2:-1.08801432771;PRDM1:-1.12300423393;PRRX1,2:-1.19834286554;SPZ1:-1.20991284389;EP300:-1.21908634494;ZNF384:-1.22838615818;POU1F1:-1.22901242727;NFATC1..3:-1.25572646329;NANOG:-1.26616966907;MZF1:-1.30712239805;TGIF1:-1.36639519438;TEF:-1.45601302375;FOX{I1,J2}:-1.51545999577;ZNF238:-1.59969060724;HBP1_HMGB_SSRP1_UBTF:-1.63846506503;TLX2:-1.68629694282;GZF1:-1.68788036141;HMX1:-1.71480096069;SMAD1..7,9:-1.84194987373;FOXL1:-1.88331195017;HIF1A:-1.95555124624
 
|top_motifs=HNF4A_NR2F1,2:4.60320277255;HNF1A:3.93152016869;RXR{A,B,G}_{NR1H2,PPAR}dimers:3.53141945589;FOXA2:3.21676503488;bHLH_family:2.08312545111;LEF1_TCF7_TCF7L1,2:2.06884496105;FOX{F1,F2,J1}:1.72727329736;NFY{A,B,C}:1.63943330713;NR1H4:1.58400182729;E2F1..5:1.45016536368;ONECUT1,2:1.39297635698;NR6A1:1.36037476294;ELK1,4_GABP{A,B1}:1.2911821517;YY1:1.24461136798;ADNP_IRX_SIX_ZHX:1.21526252449;PBX1:1.18899925622;ZNF143:1.18285456087;SOX{8,9,10}:0.958778491269;EN1,2:0.923965858727;SNAI1..3:0.898935255447;GFI1:0.890295818172;NRF1:0.866043291643;PAX3,7:0.817946991728;AIRE:0.794749281272;RORA:0.775314185763;NR5A1,2:0.713987738809;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.691030038172;FOXM1:0.689163936535;NKX3-2:0.675244916699;ZEB1:0.670763427514;MYB:0.626637189883;TFDP1:0.616820623376;FOXD3:0.561029603462;LHX3,4:0.550882231055;CEBPA,B_DDIT3:0.526569210065;RXRA_VDR{dimer}:0.515421384131;SOX2:0.500725863145;ALX4:0.469314298392;EBF1:0.428286389857;ESRRA:0.42796250179;PPARG:0.419999419709;TP53:0.402955558967;POU6F1:0.388569022481;NFIL3:0.353062439508;FOX{D1,D2}:0.326673662771;XCPE1{core}:0.305363649521;MYOD1:0.304989781692;AR:0.293630171918;HIC1:0.265100248614;UFEwm:0.257091260043;HLF:0.251839939794;CUX2:0.201604334201;ELF1,2,4:0.190179821635;GATA6:0.124480330166;MTE{core}:0.102806015159;STAT5{A,B}:0.0865402799153;PAX1,9:0.0824005123498;BREu{core}:0.0812208059745;ARID5B:0.0700803405614;TOPORS:0.069216640457;DBP:0.0510210124415;PITX1..3:0.0225483680782;SP1:0.012860639234;EVI1:-0.00262288329889;MAZ:-0.00358231330202;POU3F1..4:-0.0317362974368;PAX4:-0.03595937989;ZFP161:-0.0647003954002;RBPJ:-0.0688615418112;RXR{A,B,G}:-0.0819690639496;HOXA9_MEIS1:-0.0958807107927;TFCP2:-0.0970751573571;STAT2,4,6:-0.102652183197;PAX2:-0.127898834739;TFAP2{A,C}:-0.127963122576;SREBF1,2:-0.128302823803;TBX4,5:-0.130429769546;NFKB1_REL_RELA:-0.143525425295;SOX17:-0.144601348087;KLF4:-0.175064652198;FOXQ1:-0.199807546757;MTF1:-0.206737832645;NKX3-1:-0.225221208237;IKZF2:-0.227517240843;FOXP1:-0.236032373188;TAL1_TCF{3,4,12}:-0.239671287465;SOX5:-0.246505924481;T:-0.255856838122;PATZ1:-0.255930481384;TEAD1:-0.268152938014;LMO2:-0.278988186376;FOXN1:-0.280576332007;GLI1..3:-0.286384558628;ZNF423:-0.292572481947;HOX{A4,D4}:-0.299914179511;AHR_ARNT_ARNT2:-0.304629415922;ATF5_CREB3:-0.31170245517;VSX1,2:-0.311872159982;CDC5L:-0.327901462635;OCT4_SOX2{dimer}:-0.341967754099;ATF6:-0.346022512582;HOX{A5,B5}:-0.346289743873;MED-1{core}:-0.361220750809;HES1:-0.374902481698;FOSL2:-0.392629755886;NFE2:-0.395638129988;ALX1:-0.405200113002;REST:-0.424037223231;ESR1:-0.427832418194;STAT1,3:-0.43859710743;HMGA1,2:-0.439402845707;IRF7:-0.441083079302;FOXO1,3,4:-0.453846789243;HOX{A6,A7,B6,B7}:-0.459181836366;NANOG{mouse}:-0.463906344124;NKX2-3_NKX2-5:-0.476046877341;TLX1..3_NFIC{dimer}:-0.496366347587;ZNF148:-0.498761694712;GATA4:-0.541751254673;NFE2L2:-0.545355558311;POU2F1..3:-0.547351316012;IKZF1:-0.547792827802;IRF1,2:-0.550832138254;FOS_FOS{B,L1}_JUN{B,D}:-0.560210321435;PAX8:-0.563474027726;GTF2A1,2:-0.568611795993;FOXP3:-0.579454368901;BACH2:-0.593035963088;CREB1:-0.601342277282;PAX5:-0.603295525252;CDX1,2,4:-0.619852778914;BPTF:-0.634784821938;DMAP1_NCOR{1,2}_SMARC:-0.637442692536;NR3C1:-0.638656947093;NKX6-1,2:-0.641697149146;SPI1:-0.650625821239;RFX2..5_RFXANK_RFXAP:-0.657187555346;SPIB:-0.667011374577;NFIX:-0.668451068185;RREB1:-0.677469317077;HSF1,2:-0.700777083583;ATF4:-0.704550936793;EGR1..3:-0.706522985006;TBP:-0.707218302131;TFAP2B:-0.723275079264;ZBTB16:-0.723318756013;POU5F1:-0.730556572177;PDX1:-0.755720942591;CRX:-0.774788952756;ATF2:-0.775910505455;NHLH1,2:-0.784871866831;XBP1:-0.792160057002;SRF:-0.812910955068;MYBL2:-0.815183219949;RUNX1..3:-0.825620426864;MEF2{A,B,C,D}:-0.83608777123;HAND1,2:-0.840453729078;JUN:-0.866818441091;GTF2I:-0.867347441112;RFX1:-0.876984722966;GCM1,2:-0.878233821313;NFE2L1:-0.898050213293;ZBTB6:-0.909799809911;NKX2-2,8:-0.912609315002;TFAP4:-0.932418014115;MYFfamily:-0.945177284026;MAFB:-0.986811783106;ZIC1..3:-1.0156843388;NKX2-1,4:-1.01585617117;GFI1B:-1.01876850975;PAX6:-1.06760529573;ETS1,2:-1.08801432771;PRDM1:-1.12300423393;PRRX1,2:-1.19834286554;SPZ1:-1.20991284389;EP300:-1.21908634494;ZNF384:-1.22838615818;POU1F1:-1.22901242727;NFATC1..3:-1.25572646329;NANOG:-1.26616966907;MZF1:-1.30712239805;TGIF1:-1.36639519438;TEF:-1.45601302375;FOX{I1,J2}:-1.51545999577;ZNF238:-1.59969060724;HBP1_HMGB_SSRP1_UBTF:-1.63846506503;TLX2:-1.68629694282;GZF1:-1.68788036141;HMX1:-1.71480096069;SMAD1..7,9:-1.84194987373;FOXL1:-1.88331195017;HIF1A:-1.95555124624
 +
|xref=
 
}}
 
}}

Revision as of 10:19, 27 June 2012


Name:hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep2
Species:
Library ID:{{{library_id}}}
Sample type:{{{sample_category}}}
Additional information
Sample information
strainNA
tissueliver
dev stageNA
sexmale
age15
cell typehepatocyte
cell lineHepG2
companyNA
collaborationCarrie Davis (Cold spring Harbor Laboratories)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0000034 (stem cell)
0002321 (embryonic cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000219 (motile cell)
0000181 (metabolising cell)
0000417 (endopolyploid cell)
0000668 (parenchymal cell)
0000134 (mesenchymal cell)
0000412 (polyploid cell)
0000255 (eukaryotic cell)
0000182 (hepatocyte)
0000223 (endodermal cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002107 (liver)
0002100 (trunk)
0000483 (epithelium)
0002530 (gland)
0002384 (connective tissue)
0000926 (mesoderm)
0000479 (tissue)
0001007 (digestive system)
0000077 (mixed endoderm/mesoderm-derived structure)
0002368 (endocrine gland)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000025 (tube)
0004119 (endoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000480 (anatomical group)
0000923 (germ layer)
0003914 (epithelial tube)
0007499 (epithelial sac)
0002050 (embryonic structure)
0005911 (endo-epithelium)
0004921 (subdivision of digestive tract)
0005423 (developing anatomical structure)
0000477 (anatomical cluster)
0000481 (multi-tissue structure)
0000467 (anatomical system)
0001062 (anatomical entity)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0009569 (subdivision of trunk)
0005291 (embryonic tissue)
0009854 (digestive tract diverticulum)
0003929 (gut epithelium)
0005177 (trunk region element)
0002365 (exocrine gland)
0003104 (mesenchyme)
0005057 (immune organ)
0005172 (abdomen element)
0006925 (digestive gland)
0005256 (trunk mesenchyme)
0001048 (primordium)
0000925 (endoderm)
0006598 (presumptive structure)
0009497 (epithelium of foregut-midgut junction)
0004185 (endodermal part of digestive tract)
0005173 (abdominal segment element)
0000015 (anatomical boundary)
0009856 (sac)
0002532 (epiblast (generic))
0001555 (digestive tract)
0002417 (abdominal segment of trunk)
0007026 (primitive gut)
0001041 (foregut)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002405 (immune system)
0002423 (hepatobiliary system)
0009142 (entire embryonic mesenchyme)
0006235 (foregut-midgut junction)
0006595 (presumptive endoderm)
0006603 (presumptive mesoderm)
0008835 (hepatic diverticulum)
0003894 (liver primordium)
0004161 (septum transversum)
0008836 (liver bud)

FF: FANTOM5
NA

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

NA