FF:10825-111C6: Difference between revisions

Latest revision as of 15:07, 3 June 2020

Name:	chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep2
Species:	Human (Homo sapiens)
Library ID:	CNhs12335
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	female
age	53
cell type	granulocyte
cell line	K562
company	NA
collaboration	Carrie Davis (Cold spring Harbor Laboratories)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005310

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12335		CAGE		DRX007856		DRR008728

Accession ID Hg19

Library id		BAM		CTSS
CNhs12335		DRZ000153		DRZ001538

Accession ID Hg38

Library id		BAM		CTSS
CNhs12335		DRZ011503		DRZ012888

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0259
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.683
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0.0778
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0195
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0493
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.183
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.229
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.357
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.567
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0.932
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12335

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.602
MA0003.1	MA0003.1	0.679
MA0004.1	MA0004.1	0.245
MA0006.1	MA0006.1	0.145
MA0007.1	MA0007.1	0.395
MA0009.1	MA0009.1	0.24
MA0014.1	MA0014.1	0.144
MA0017.1	MA0017.1	0.126
MA0018.2	MA0018.2	0.402
MA0019.1	MA0019.1	0.724
MA0024.1	MA0024.1	6.94911e-7
MA0025.1	MA0025.1	0.553
MA0027.1	MA0027.1	0.516
MA0028.1	MA0028.1	9.74778e-9
MA0029.1	MA0029.1	0.00327
MA0030.1	MA0030.1	0.63
MA0031.1	MA0031.1	0.408
MA0035.2	MA0035.2	1.92261e-24
MA0038.1	MA0038.1	0.214
MA0039.2	MA0039.2	0.00797
MA0040.1	MA0040.1	0.0881
MA0041.1	MA0041.1	0.833
MA0042.1	MA0042.1	0.759
MA0043.1	MA0043.1	0.722
MA0046.1	MA0046.1	0.614
MA0047.2	MA0047.2	0.76
MA0048.1	MA0048.1	0.286
MA0050.1	MA0050.1	2.39736e-6
MA0051.1	MA0051.1	4.69248e-6
MA0052.1	MA0052.1	0.025
MA0055.1	MA0055.1	2.43949e-4
MA0057.1	MA0057.1	0.618
MA0058.1	MA0058.1	0.0432
MA0059.1	MA0059.1	0.00225
MA0060.1	MA0060.1	2.57883e-18
MA0061.1	MA0061.1	0.568
MA0062.2	MA0062.2	4.30295e-11
MA0065.2	MA0065.2	0.0315
MA0066.1	MA0066.1	0.728
MA0067.1	MA0067.1	0.954
MA0068.1	MA0068.1	0.02
MA0069.1	MA0069.1	0.747
MA0070.1	MA0070.1	0.124
MA0071.1	MA0071.1	0.208
MA0072.1	MA0072.1	0.168
MA0073.1	MA0073.1	0.849
MA0074.1	MA0074.1	0.156
MA0076.1	MA0076.1	2.34022e-12
MA0077.1	MA0077.1	0.269
MA0078.1	MA0078.1	0.361
MA0079.2	MA0079.2	0.491
MA0080.2	MA0080.2	0.233
MA0081.1	MA0081.1	0.0862
MA0083.1	MA0083.1	0.116
MA0084.1	MA0084.1	0.73
MA0087.1	MA0087.1	0.116
MA0088.1	MA0088.1	9.73526e-4
MA0090.1	MA0090.1	0.00611
MA0091.1	MA0091.1	0.536
MA0092.1	MA0092.1	0.471
MA0093.1	MA0093.1	0.127
MA0099.2	MA0099.2	0.528
MA0100.1	MA0100.1	0.00349
MA0101.1	MA0101.1	0.474
MA0102.2	MA0102.2	0.0032
MA0103.1	MA0103.1	0.385
MA0104.2	MA0104.2	1.23217e-4
MA0105.1	MA0105.1	0.125
MA0106.1	MA0106.1	0.796
MA0107.1	MA0107.1	0.0261
MA0108.2	MA0108.2	0.0201
MA0111.1	MA0111.1	0.426
MA0112.2	MA0112.2	0.204
MA0113.1	MA0113.1	0.545
MA0114.1	MA0114.1	0.00805
MA0115.1	MA0115.1	0.0676
MA0116.1	MA0116.1	0.0115
MA0117.1	MA0117.1	0.523
MA0119.1	MA0119.1	0.523
MA0122.1	MA0122.1	0.819
MA0124.1	MA0124.1	0.837
MA0125.1	MA0125.1	0.854
MA0131.1	MA0131.1	0.406
MA0135.1	MA0135.1	0.225
MA0136.1	MA0136.1	0.257
MA0137.2	MA0137.2	0.177
MA0138.2	MA0138.2	0.974
MA0139.1	MA0139.1	0.0667
MA0140.1	MA0140.1	1.47945e-41
MA0141.1	MA0141.1	0.00202
MA0142.1	MA0142.1	0.188
MA0143.1	MA0143.1	0.142
MA0144.1	MA0144.1	0.92
MA0145.1	MA0145.1	0.815
MA0146.1	MA0146.1	0.0706
MA0147.1	MA0147.1	7.82976e-6
MA0148.1	MA0148.1	0.319
MA0149.1	MA0149.1	0.0138
MA0150.1	MA0150.1	0.15
MA0152.1	MA0152.1	0.378
MA0153.1	MA0153.1	0.0951
MA0154.1	MA0154.1	0.37
MA0155.1	MA0155.1	0.514
MA0156.1	MA0156.1	8.58306e-4
MA0157.1	MA0157.1	0.476
MA0159.1	MA0159.1	0.391
MA0160.1	MA0160.1	0.0386
MA0162.1	MA0162.1	0.411
MA0163.1	MA0163.1	7.31235e-6
MA0164.1	MA0164.1	0.598
MA0258.1	MA0258.1	0.345
MA0259.1	MA0259.1	0.0105

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12335

Novel motif	Logo	P-value
1	1	0.03
10	10	0.0954
100	100	0.218
101	101	0.658
102	102	0.391
103	103	0.731
104	104	0.65
105	105	0.832
106	106	0.0276
107	107	0.0116
108	108	0.718
109	109	0.0186
11	11	0.147
110	110	0.157
111	111	0.523
112	112	0.801
113	113	0.0952
114	114	0.0218
115	115	0.464
116	116	0.7
117	117	0.0102
118	118	0.196
119	119	0.588
12	12	0.827
120	120	0.469
121	121	0.961
122	122	0.0427
123	123	0.837
124	124	0.453
125	125	0.456
126	126	0.135
127	127	0.0942
128	128	0.0578
129	129	0.458
13	13	0.00155
130	130	0.0495
131	131	0.356
132	132	0.159
133	133	0.0625
134	134	0.958
135	135	0.296
136	136	0.0309
137	137	0.279
138	138	0.558
139	139	0.424
14	14	0.491
140	140	0.026
141	141	0.0313
142	142	0.744
143	143	0.576
144	144	0.504
145	145	0.932
146	146	0.887
147	147	0.737
148	148	0.784
149	149	0.215
15	15	0.463
150	150	0.555
151	151	0.383
152	152	0.125
153	153	0.707
154	154	0.337
155	155	0.194
156	156	0.482
157	157	0.352
158	158	0.987
159	159	0.159
16	16	0.883
160	160	0.944
161	161	0.0323
162	162	0.708
163	163	0.403
164	164	0.459
165	165	0.964
166	166	0.0345
167	167	0.327
168	168	0.749
169	169	0.711
17	17	0.799
18	18	0.992
19	19	0.903
2	2	0.22
20	20	0.0702
21	21	0.444
22	22	0.57
23	23	0.0224
24	24	0.16
25	25	0.324
26	26	0.177
27	27	0.321
28	28	0.549
29	29	0.028
3	3	0.455
30	30	0.168
31	31	0.562
32	32	0.0643
33	33	0.0478
34	34	0.392
35	35	0.356
36	36	0.0269
37	37	0.235
38	38	0.302
39	39	0.2
4	4	0.0663
40	40	0.137
41	41	0.962
42	42	0.354
43	43	0.622
44	44	0.516
45	45	0.512
46	46	0.508
47	47	0.0347
48	48	0.181
49	49	0.188
5	5	0.797
50	50	0.961
51	51	0.955
52	52	0.0257
53	53	0.888
54	54	0.719
55	55	0.0214
56	56	0.923
57	57	0.451
58	58	0.47
59	59	0.944
6	6	0.279
60	60	0.343
61	61	0.0604
62	62	0.367
63	63	0.428
64	64	0.422
65	65	0.579
66	66	8.17077e-6
67	67	0.616
68	68	0.17
69	69	0.787
7	7	0.0516
70	70	0.429
71	71	0.041
72	72	0.455
73	73	0.951
74	74	0.699
75	75	0.00623
76	76	0.692
77	77	0.453
78	78	0.00151
79	79	0.0803
8	8	0.559
80	80	0.199
81	81	0.346
82	82	0.984
83	83	0.131
84	84	0.505
85	85	0.198
86	86	0.856
87	87	0.0558
88	88	0.98
89	89	0.569
9	9	0.56
90	90	0.494
91	91	0.0613
92	92	0.524
93	93	0.987
94	94	0.754
95	95	0.0264
96	96	0.651
97	97	0.348
98	98	0.32
99	99	0.5

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12335

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100664 K-562 cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
1036 (chronic leukemia)
8692 (myeloid leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0102580 (chronic myeloid leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0100740 (myeloid leukemia cell line sample)
0100664 (K-562 cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007751
+|DRA_sample_Accession=CAGE@SAMD00005310
-|accession_numbers=CAGE;DRX007856;DRR008728;DRZ000153;DRZ001538
+|accession_numbers=CAGE;DRX007856;DRR008728;DRZ000153;DRZ001538;DRZ011503;DRZ012888
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chrX:48644984..48645005,+!p1@GATA1!2.31!202.53!GATA1;;chr17:40441354..40441410,+!p2@STAT5A!2.12!132.34!STAT5A;;chr20:56100179..56100208,-!p1@CTCFL!1.98!93.72!CTCFL;;chr12:54694758..54694805,-!p1@NFE2!1.88!89.60!NFE2;;chr17:46703687..46703740,-!p1@HOXB9!1.80!62.15!HOXB9;;chr19:12998003..12998021,-!p1@KLF1!1.72!51.56!KLF1;;chr5:134369905..134369972,-!p1@PITX1!1.71!75.68!PITX1;;chr12:54694807..54694832,-!p3@NFE2!1.70!48.62!NFE2;;chr9:135854091..135854159,+!p1@GFI1B!1.69!47.84!GFI1B;;chr6:135502501..135502546,+!p1@MYB!1.67!54.31!MYB;;chr8:37963466..37963506,+!p3@ASH2L!1.66!55.49!ASH2L;;chr12:54689532..54689551,-!p4@NFE2!1.61!40.19!NFE2;;chr12:54785074..54785122,-!p2@ZNF385A!1.59!56.86!ZNF385A;;chr12:54694653..54694672,-!p2@NFE2!1.53!32.55!NFE2;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!1.47!258.80!ZNF595;;chr3:128212033..128212051,-!p1@GATA2!1.46!28.04!GATA2;;chr20:31350184..31350200,+!p1@DNMT3B!1.42!51.37!DNMT3B;;chr3:128206762..128206781,-!p2@GATA2!1.41!148.62!GATA2;;chr19:13213511..13213545,-!p2@LYL1!1.41!26.66!LYL1;;chr6:135502408..135502459,+!p2@MYB!1.30!21.76!MYB;;chr12:54785054..54785072,-!p4@ZNF385A!1.28!20.39!ZNF385A;;chr10:94449703..94449718,+!p1@HHEX!1.25!64.31!HHEX;;chr1:47697881..47697910,-!p4@TAL1!1.25!16.67!TAL1;;chrX:48644976..48644983,+!p2@GATA1!1.21!15.10!GATA1;;chr10:70320074..70320106,+!p1@TET1!1.20!29.61!TET1;;chr8:145701192..145701241,-!p1@FOXH1!1.20!14.90!FOXH1;;chr22:19748231..19748317,+!p1@TBX1!1.19!14.31!TBX1;;chr4:174451370..174451387,-!p1@HAND2!1.17!13.92!HAND2;;chr17:40469520..40469532,-!p12@STAT3!1.16!13.53!STAT3;;chr19:13213555..13213568,-!p5@LYL1!1.16!13.53!LYL1;;chr7:50343634..50343717,+!p2@IKZF1!1.16!13.33!IKZF1;;chr5:88178983..88179012,-!p1@MEF2C!1.15!100.78!MEF2C;;chr1:47695003..47695042,-!p2@TAL1!1.15!13.14!TAL1;;chrX:48645010..48645015,+!p3@GATA1!1.11!11.76!GATA1;;chr6:20402102..20402152,+!p1@E2F3!1.10!47.64!E2F3;;chr12:54689552..54689574,-!p6@NFE2!1.10!11.57!NFE2;;chr6:135502472..135502489,+!p3@MYB!1.09!11.18!MYB;;chr20:50159198..50159299,-!p1@NFATC2!1.07!15.69!NFATC2;;chr17:46622229..46622257,-!p6@HOXB2!1.07!12.55!HOXB2;;chr20:56100155..56100163,-!p2@CTCFL!1.07!10.78!CTCFL;;chr17:46622205..46622218,-!p3@HOXB2!1.06!12.16!HOXB2;;chr17:40469457..40469494,-!p14@STAT3!1.06!10.59!STAT3;;chr2:200323414..200323455,-!p1@SATB2!1.05!22.35!SATB2;;chr12:56415246..56415286,+!p2@IKZF4!1.05!10.20!IKZF4;;chr8:106330656..106330684,+!p1@ZFPM2!1.04!26.66!ZFPM2;;chr19:22235279..22235301,+!p1@ZNF257!1.04!19.02!ZNF257;;chr11:32457075..32457095,-!p1@WT1!1.02!9.41!WT1;;chr12:56414795..56414836,+!p4@IKZF4!1.02!9.41!IKZF4;;chr17:41623692..41623715,-!p1@ETV4!1.01!40.19!ETV4;;chr6:85473156..85473210,-!p2@TBX18!1.01!11.37!TBX18;;chr17:40441330..40441344,+!p9@STAT5A!1.00!9.02!STAT5A;;chr17:46703826..46703845,-!p3@HOXB9!1.00!9.02!HOXB9;;chr22:22863052..22863133,-!p1@ZNF280B!0.99!23.72!ZNF280B;;chr3:141747459..141747475,-!p1@TFDP2!0.97!71.37!TFDP2;;chr2:239148671..239148686,-!p1@HES6!0.96!30.59!HES6;;chr17:46655730..46655791,-!p1@HOXB4!0.96!20.98!HOXB4;;chr17:40440177..40440190,+!p6@STAT5A!0.96!8.04!STAT5A;;chr20:42295713..42295738,+!p2@MYBL2!0.95!48.23!MYBL2;;chr8:37963407..37963454,+!p2@ASH2L!0.95!24.31!ASH2L;;chr10:124895472..124895508,+!p1@HMX3!0.95!7.84!HMX3;;chr5:134369879..134369898,-!p2@PITX1!0.93!7.45!PITX1;;chr17:41277372..41277418,-!p1@BRCA1!0.91!27.06!BRCA1;;chr11:32457103..32457123,-!p3@WT1!0.90!6.86!WT1;;chr6:34204642..34204664,+!p2@HMGA1!0.89!947.96!HMGA1;;chr5:88179017..88179046,-!p2@MEF2C!0.89!28.23!MEF2C;;chr10:94449675..94449694,+!p2@HHEX!0.86!17.65!HHEX;;chr11:61520075..61520136,+!p1@C11orf9!0.86!13.72!C11orf9;;chr12:54694738..54694749,-!p5@NFE2!0.86!6.27!NFE2;;chr13:36788658..36788703,-!p2@CCDC169-SOHLH2,p2@SOHLH2!0.86!6.27!SOHLH2;;chr22:22874610..22874616,-!p1@ZNF280A!0.86!6.27!ZNF280A;;chr9:135854074..135854089,+!p2@GFI1B!0.86!6.27!GFI1B;;chr17:46682321..46682362,-!p1@HOXB6!0.85!6.08!HOXB6;;chr9:124976185..124976212,-!p4@LHX6!0.85!6.08!LHX6;;chr2:200322259..200322280,-!p5@SATB2!0.85!6.08!SATB2;;chr17:40469366..40469383,-!p17@STAT3!0.84!5.88!STAT3;;chr15:76629123..76629151,+!p1@ISL2!0.83!6.47!ISL2;;chr3:138665937..138665968,-!p1@FOXL2!0.83!5.69!FOXL2;;chr2:145277640..145277771,-!p1@ZEB2!0.82!81.76!ZEB2;;chr10:51572408..51572454,+!p3@NCOA4!0.82!35.49!NCOA4;;chr19:926001..926046,+!p1@ARID3A!0.82!20.78!ARID3A;;chr20:42295745..42295765,+!p1@MYBL2!0.81!96.46!MYBL2;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.80!25.88!TAL1;;chr16:68118689..68118733,+!p3@NFATC3!0.80!14.31!NFATC3;;chr3:141747441..141747452,-!p4@TFDP2!0.80!7.65!TFDP2;;chr20:62680984..62680999,-!p1@SOX18!0.80!7.25!SOX18;;chr6:20402070..20402082,+!p5@E2F3!0.80!6.27!E2F3;;chr7:148581360..148581425,-!p1@EZH2!0.79!27.45!EZH2;;chr16:68119324..68119364,+!p1@NFATC3!0.79!24.70!NFATC3;;chr11:6947720..6947812,+!p1@ZNF215!0.79!6.86!ZNF215;;chr6:34204672..34204692,+!p1@HMGA1!0.78!627.60!HMGA1;;chr7:64363638..64363667,+!p1@ZNF273!0.78!27.64!ZNF273;;chr2:200322654..200322707,-!p2@SATB2!0.78!7.65!SATB2;;chr19:52074502..52074587,+!p1@ZNF175!0.77!19.21!ZNF175;;chr17:46655704..46655718,-!p2@HOXB4!0.77!7.65!HOXB4;;chr11:47400078..47400106,-!p1@SPI1!0.77!4.90!SPI1;;chr3:138665969..138665993,-!p2@FOXL2!0.77!4.90!FOXL2;;chr8:106330696..106330719,+!p2@ZFPM2!0.76!6.27!ZFPM2;;chr3:141747950..141748004,-!p7@TFDP2!0.76!4.71!TFDP2;;chr9:135854058..135854072,+!p3@GFI1B!0.76!4.71!GFI1B;;chr10:70320041..70320065,+!p2@TET1!0.76!4.71!TET1;;chr12:56415287..56415300,+!p5@IKZF4!0.76!4.71!IKZF4;;chr7:148581327..148581347,-!p2@EZH2!0.75!17.25!EZH2;;chr2:74229812..74229867,+!p1@TET3!0.75!12.55!TET3;;chr17:41622925..41622976,-!p3@ETV4!0.75!7.25!ETV4;;chr9:127533582..127533615,-!p1@NR6A1!0.75!7.25!NR6A1;;chr17:42295777..42295816,-!p7@UBTF!0.75!5.69!UBTF;;chr4:4291861..4291913,-!p1@LYAR!0.74!116.27!LYAR;;chr14:21994337..21994442,-!p1@SALL2!0.74!13.33!SALL2;;chr11:47400045..47400060,-!p6@SPI1!0.74!4.51!SPI1;;chr3:128207349..128207386,-!p3@GATA2!0.74!4.51!GATA2;;chr19:926055..926068,+!p2@ARID3A!0.73!10.20!ARID3A;;chr19:24097706..24097731,+!p2@ZNF726!0.73!8.82!ZNF726;;chr11:19262486..19262512,-!p4@E2F8!0.72!5.49!E2F8;;chr1:43148625..43148710,+!p3@YBX1!0.71!7.84!YBX1;;chr17:41622765..41622821,-!p2@ETV4!0.71!6.67!ETV4;;chr17:79881332..79881348,-!p3@MAFG!0.71!6.27!MAFG;;chr2:200322229..200322251,-!p3@SATB2!0.71!4.12!SATB2;;chr10:51572339..51572376,+!p4@NCOA4!0.69!9.61!NCOA4;;chr8:37963511..37963523,+!p4@ASH2L!0.69!3.92!ASH2L;;chr17:46703528..46703549,-!p5@HOXB9!0.69!3.92!HOXB9;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!0.69!3.92!ZBED1;;chr19:21264991..21265026,+!p1@ZNF714!0.67!27.84!ZNF714;;chr17:17726907..17726958,-!p2@SREBF1!0.67!25.88!SREBF1;;chr22:20748434..20748455,+!p1@ZNF74!0.67!13.14!ZNF74;;chr3:168864315..168864339,-!p2@MECOM!0.67!6.47!MECOM;;chr10:60145155..60145206,+!p1@TFAM!0.66!183.12!TFAM;;chr6:134274354..134274371,+!p1@TBPL1!0.66!110.78!TBPL1;;chr16:88519669..88519726,+!p1@ZFPM1!0.66!37.45!ZFPM1;;chr5:138609782..138609826,+!p5@MATR3!0.66!26.66!MATR3;;chr19:23941680..23941704,-!p1@ZNF681!0.66!11.76!ZNF681;;chr17:40440446..40440464,+!p5@STAT5A!0.66!3.53!STAT5A;;chr19:13213465..13213478,-!p7@LYL1!0.66!3.53!LYL1;;chr8:145669791..145669834,-!p1@TONSL!0.65!11.37!TONSL;;chr22:21356378..21356422,-!p2@THAP7!0.64!34.70!THAP7;;chr13:41593425..41593480,-!p1@ELF1!0.64!25.10!ELF1;;chr16:29818160..29818188,+!p6@MAZ!0.64!18.43!MAZ;;chr6:56954867..56954882,+!p2@ZNF451!0.64!11.18!ZNF451;;chr12:51566562..51566584,-!p2@TFCP2!0.64!10.59!TFCP2;;chr2:74375058..74375069,-!p3@BOLA3!0.64!6.86!BOLA3;;chr6:28973366..28973394,-!p2@ZNF311!0.64!4.31!ZNF311;;chr7:73038839..73038862,-!p1@MLXIPL!0.64!3.33!MLXIPL;;chr9:124976154..124976177,-!p5@LHX6!0.64!3.33!LHX6;;chr9:124976328..124976372,-!p2@LHX6!0.64!3.33!LHX6;;chr4:109089095..109089144,-!p6@LEF1!0.64!3.33!LEF1;;chr17:46621146..46621180,-!p10@HOXB2!0.64!3.33!HOXB2;;chr11:32457413..32457431,-!p2@WT1!0.64!3.33!WT1;;chr12:56414851..56414871,+!p6@IKZF4!0.64!3.33!IKZF4;;chr8:28748099..28748141,+!p2@HMBOX1!0.63!11.57!HMBOX1;;chr19:21265028..21265052,+!p2@ZNF714!0.63!6.47!ZNF714;;chr16:1429627..1429662,-!p2@UNKL!0.62!10.59!UNKL;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.62!7.65!SOHLH2;;chr1:23857698..23857733,-!p1@E2F2!0.62!6.47!E2F2;;chr16:88519743..88519754,+!p2@ZFPM1!0.62!3.53!ZFPM1;;chr12:54393880..54393962,+!p1@HOXC9!0.62!3.14!HOXC9;;chr22:21356016..21356105,-!p1@THAP7!0.61!58.43!THAP7;;chr1:151032860..151032918,+!p1@MLLT11!0.61!44.11!MLLT11;;chr19:24097675..24097699,+!p1@ZNF726!0.61!11.96!ZNF726;;chr17:46622114..46622138,-!p4@HOXB2!0.61!5.10!HOXB2;;chr17:46622440..46622477,-!p5@HOXB2!0.61!3.53!HOXB2;;chr6:126102254..126102289,+!p5@NCOA7!0.60!9.61!NCOA7;;chr19:12203100..12203132,+!p1@ZNF788!0.60!6.86!ZNF788;;chr1:247171347..247171366,-!p2@ZNF695!0.60!6.08!ZNF695;;chr17:41623009..41623053,-!p4@ETV4!0.60!5.29!ETV4;;chr18:55102598..55102623,+!p1@ONECUT2!0.60!2.94!ONECUT2;;chr4:109089901..109089930,-!p3@LEF1!0.60!2.94!LEF1;;chr11:47399996..47400014,-!p4@SPI1!0.60!2.94!SPI1;;chr7:50348268..50348366,+!p4@IKZF1!0.60!2.94!IKZF1;;chr2:178257401..178257432,-!p4@NFE2L2!0.59!19.41!NFE2L2;;chr6:12008986..12009016,+!p3@HIVEP1!0.59!10.59!HIVEP1;;chr12:3068466..3068495,+!p3@TEAD4!0.59!7.06!TEAD4;;chr1:203764633..203764674,+!p2@ZC3H11A!0.59!5.10!ZC3H11A;;chr17:42295897..42295953,-!p10@UBTF!0.59!4.12!UBTF;;chr4:4291837..4291859,-!p2@LYAR!0.58!10.78!LYAR;;chr1:249153232..249153251,-!p2@ZNF692!0.58!7.45!ZNF692;;chr17:46687959..46688007,-!p2@HOXB7!0.58!4.12!HOXB7;;chr6:28973090..28973094,-!p1@ZNF311!0.58!3.73!ZNF311;;chr1:78444778..78444800,-!p2@FUBP1!0.57!59.01!FUBP1;;chr1:8877692..8877732,-!p1@RERE!0.57!27.25!RERE;;chr14:55493763..55493824,-!p1@WDHD1!0.57!25.10!WDHD1;;chr19:925727..925784,+!p3@ARID3A!0.57!6.67!ARID3A;;chr15:76629097..76629120,+!p2@ISL2!0.57!3.14!ISL2;;chr10:124895548..124895570,+!p2@HMX3!0.57!2.74!HMX3;;chr13:100623375..100623425,-!p1@ZIC5!0.57!2.74!ZIC5;;chr2:63277948..63277974,+!p1@OTX1!0.57!2.74!OTX1;;chr19:50832895..50832928,+!p3@NR1H2!0.57!2.74!NR1H2;;chr7:102985160..102985273,-!p1@DNA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@@ Line 41: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562%2520ENCODE%252c%2520biol_rep2.CNhs12335.10825-111C6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562%2520ENCODE%252c%2520biol_rep2.CNhs12335.10825-111C6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562%2520ENCODE%252c%2520biol_rep2.CNhs12335.10825-111C6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562%2520ENCODE%252c%2520biol_rep2.CNhs12335.10825-111C6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562%2520ENCODE%252c%2520biol_rep2.CNhs12335.10825-111C6.hg38.nobarcode.ctss.bed.gz
 |id=FF:10825-111C6
 |is_a=EFO:0002091;;FF:0000210;;FF:0100664
 |is_obsolete=
 |library_id=CNhs12335
-|library_id_phase_based=1:CNhs12335
+|library_id_phase_based=2:CNhs12335
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10825
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10825
 |name=chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep2
 |namespace=FANTOM5
@@ Line 51: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12335,LSID913,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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Latest revision as of 15:07, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0