FF:10827-111C8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005614 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007801;DRR008673;DRZ000098;DRZ001483;DRZ011448;DRZ012833 | ||
| | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:14566,DOID:0060083,DOID:1240,DOID:8692 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100737,FF:0101035,FF:0101883,FF:0100740 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0101035 | |fonse_cell_line=FF:0101035 | ||
|fonse_cell_line_closure=FF:0101035 | |fonse_cell_line_closure=FF:0101035 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M0%2529%2520cell%2520line%253aKG-1.CNhs13053.10827-111C8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M0%2529%2520cell%2520line%253aKG-1.CNhs13053.10827-111C8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M0%2529%2520cell%2520line%253aKG-1.CNhs13053.10827-111C8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M0%2529%2520cell%2520line%253aKG-1.CNhs13053.10827-111C8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M0%2529%2520cell%2520line%253aKG-1.CNhs13053.10827-111C8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10827-111C8 | |id=FF:10827-111C8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0101883 | ||
|is_obsolete= | |||
|library_id=CNhs13053 | |||
|library_id_phase_based=2:CNhs13053 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10827 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10827 | |||
|name=acute myeloid leukemia (FAB M0) cell line:KG-1 | |name=acute myeloid leukemia (FAB M0) cell line:KG-1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13053,LSID1000,release012,COMPLETED | |profile_hcage=CNhs13053,LSID1000,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0395144944032282,0,0,0,0,0.140255033623028,0.14586699057442,-0.022495765080413,0.299871185978778,0,0,0,0.053712321073206,0,0,0,0,0,0,0,0,0,-0.0742940215419713,0,0,0,0,0,-0.0189289074616012,0,0,0.208967595971483,0,0,0,0,0,0,0,0,0,0,0.0790289888064564,0,-0.0436098870721239,0.0308069135674021,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.579110055299213,0,-0.035138906939338,0.0790289888064564,0.0488746293318147,0,0,-0.0183146384066406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0790289888064564,0,0,0,0,0,0,-0.313915095481956,0,0,0,-0.0464771157172899,0.156108110094709,0.0395144944032282,0,0.0395144944032282,0,0.105741977530452,0.108242744539066,0,0,0,0,0,0,0.300573063709415,0,0,0,0.642297621078104,0,0,0,0,0,0,-0.096373593922461,0.0790289888064564,0,0,-0.0485707522809905,-0.219407751275194,0,0,0.0408201400444654,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0.14586699057442,0.105741977530452,0,0,0.0790289888064564,0,0,0,0,0,0,0,0,-0.247178875285564,0.0395144944032282,-0.474086218752008,0.0602621862446867,0.0395144944032282,0,-0.427279086909571,0,0,0,0.0255324847916393,0.203777328768159,0,0,0.0790289888064564,0,-0.128119866952565,0,-0.0504125515893149,0,0,0,0,-0.0186252810838506,-0.305472230898407,0.379678107669889,-0.00329596827433709,-0.0683442610773682,0,0,0,0,0.0804777437477429,0,0.0249875067806792,-0.0827201683234173,-0.221611588102807,-0.486174759657386,-0.055712496781182,0,0,0,-0.589771017926281,-0.939349924586432,0,0,0.438084609271964,-0.141835124157431,0,0.0790289888064564,-0.391044581551635,0,-0.39685051075467,-0.248868050382253,0,0.606601941378621,0,0,0,0,0,0.0790289888064564,0,0,0,0,0,-0.0574934668214365,0.228653736848139,0.213778701493528,0,0,0,-0.416750459289006,0,-0.0050481052138168,-0.373286155956567,-0.0147656093717597,-0.122721920195581,0.405347016849784,0,-0.0475233598968122,-0.0132535972268034,-0.273918717538021,0.0942375620126685,-0.147401849371139,-0.189981719549847,0,0.0870235344938954,-0.640405638539592,0.0925230828125354,-0.287679940390002,-0.00198824463695541,-0.153065338405772,-0.0966341244116058,0,0,0,-0.61927679666301,0,0,-0.344247723902354,-0.242775096511348,-0.481148382640766,-0.288802925930422,0.0392665108228875,0.149255259658878,-0.0395325284566706,-0.202570085783494,-0.0203473705409363,-0.4215723249037,-0.19458927216426,0.0790289888064564,-0.00894021814424853,-0.104575249338155,0.137561785402192,0.264193492550709,0,-0.183404398101566,0.0106847277290881,0.277821166763554,-0.382876525994881,-0.159378053983353,0,-0.0506658127313275,-0.278204167161997,0.14586699057442,0,0,0,0,0.187624933449597,-0.539492143030166,0.271666011307512,0,-0.0342126720029274,-0.0115835937070766,0.169559181769002,0,0.0583453669046603,-0.202170761610805,-0.0738739149957105,-0.117924951677061,0,0.0331865243469854,0.0186031146975395,-0.0859617075325464,0.10843889142126,-0.0584468268118252,0.382627475994271,-0.0858278306181153,-0.0464771157172899,-0.409261757120338,0,-0.00909784366883136,-0.210162025788965,-0.352711053705382,0.200521534107864,-0.100214002647952,-0.433243372374865,0,-1.03308194522546,0,0.057993778295045,0,0.328691035551468,-0.54043375147324,0.805360951111354,0.249292789607764,0,0.1716173175438,-0.788130937773974,0,-0.118833326495801,-0.0425771156197334,0,-0.150367083334639,-0.551828975938163,-0.211650427864589,-0.138989456679195,0,-0.790080158389657,0,0,-0.015810840131635,0.211094421286645,0.0790289888064564,-0.0255863598888928,0.0890357680574155,-0.0251059858960818,-0.115971073434934,0.414410901873466,0,-0.645700337992725,0,0,-0.60592806381803,-0.0974615761810595,0.0422590970653637,0.126351766183133,0,-0.108622809454255,0,0,-0.0316607753907558,0.254866367113101,0.060875853581083,0,0,-0.0995947647441163,0,0,0.0395144944032282,0,0,0,0,0,0,0,0,0,0.110120289719385,0.0248447774534407,0,0.16306041568442,0,0,0,0,0,0,0,0,-0.49974968990496,0.0612557572676713,0.0807599130917384,0.07293349528721,0,0,0,-0.215723402553475,0.0973365016146907,0.0790289888064564,0.123003660615469,0,0,0,0,-0.0861409897892114,0,0.0790289888064564,0.0395144944032282,0.07293349528721,0.24284260665575,0.321088908629194,0,0,0,0.137456500271676,0,0,0,0,-0.101694743922068,0,0,0.0108161327550451,0,-0.15091853597902,-0.0815818795468414,0,0.59909654408635,-0.0569593531343009,-0.895209438774996,0,0,-0.261347131789888,0,0,0.285404211860758,0.165148935685783,0.0790289888064564,0,0,0,0,0,0.203777328768159,0.0790289888064564,0.533122586612294,0,0,0,0,0,0.14586699057442,0,0.0790289888064564,0,0,0,-0.288281276630829,-0.0131950678520541,0,0,0,0,0,0,0,-0.0241060230789031,0.286479503024849,0,0,0,0,0,0,0,0,0.561168213163863,0.642297621078104,0,0,0,0,0.0488746293318147,0,0.0790289888064564,0,0.0790289888064564,0.5207133831511,0,0,-0.022495765080413,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0225479045389721,-0.114707635316221,0,0.0790289888064564,0,0,0,0.14586699057442,0,0.171737160844943,0,0.0790289888064564,0,0,-0.113884373708977,0,0,0,0.517756436343054,0,0.140255033623028,0,0,0,0.0395144944032282,0,0,0.0395144944032282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0257473465285463,0,-0.0696075247963728,-0.0300651285857463,0,0,-0.193113858229813,0,0,0,0,0,0,0.0705482403555525,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0790289888064564,0,0,0,0,0,0,-0.0962259712900034,0,0,0,0,0,0,0,-0.0189289074616012,0,0,0.082789349870763,0,0,0,0,0.0790289888064564,0,-0.215043345369499,-0.210286904535938,-0.171455718308095,0,0,0,-0.054385572482455,0.579110055299213,0,-0.00554232316747183,0.0790289888064564,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0742940215419713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0790289888064564,0,0,0,0,0,0,0,0.107391795511891,0.0790289888064564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254866367113101,-0.000989479462182044,0,0,0,-0.0672192390826238,0,0,0,0,0,0,0,0,0.14586699057442,0,0,0,0,0,0,0,0,0,0,0,0.0790289888064564,0,0,0,0,0,0,0,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| |||
|rna_box=111 | |rna_box=111 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=149.2695 | |rna_weight_ug=149.2695 | ||
|sample_age=59 | |sample_age=59 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1166 | |sample_cell_catalog=RCB1166 | ||
|sample_cell_line=KG-1 | |sample_cell_line=KG-1 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.20053823184008e-259!GO:0043227;membrane-bound organelle;4.0628570842121e-231!GO:0043231;intracellular membrane-bound organelle;1.11410460711934e-230!GO:0043226;organelle;1.01788882240593e-214!GO:0043229;intracellular organelle;3.60261751815604e-214!GO:0044422;organelle part;3.85599457378919e-151!GO:0044446;intracellular organelle part;1.57223399363363e-149!GO:0005737;cytoplasm;2.5896856233072e-149!GO:0044237;cellular metabolic process;1.1698680519061e-122!GO:0005634;nucleus;2.22748959877155e-120!GO:0032991;macromolecular complex;2.10114559095138e-119!GO:0044238;primary metabolic process;2.41275591652212e-117!GO:0043170;macromolecule metabolic process;7.44647133632345e-110!GO:0044444;cytoplasmic part;2.55071433962041e-107!GO:0030529;ribonucleoprotein complex;7.9484271986566e-104!GO:0044428;nuclear part;2.17799470243063e-96!GO:0043233;organelle lumen;3.54779875594937e-91!GO:0031974;membrane-enclosed lumen;3.54779875594937e-91!GO:0003723;RNA binding;8.39515568092169e-91!GO:0005739;mitochondrion;7.37026063945204e-79!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.29516405928345e-72!GO:0043283;biopolymer metabolic process;6.4121896814188e-72!GO:0006396;RNA processing;2.07463186454708e-69!GO:0010467;gene expression;1.23715595646848e-68!GO:0006412;translation;4.85546906077917e-61!GO:0031981;nuclear lumen;2.3532714498422e-59!GO:0043234;protein complex;2.38472148572886e-59!GO:0005840;ribosome;3.37534932339899e-57!GO:0044429;mitochondrial part;1.56717314413096e-54!GO:0009058;biosynthetic process;2.43112843871758e-51!GO:0005515;protein binding;9.06022817398182e-51!GO:0016071;mRNA metabolic process;2.32580578341771e-50!GO:0044249;cellular biosynthetic process;4.56795604552063e-50!GO:0003735;structural constituent of ribosome;1.26070051375772e-49!GO:0003676;nucleic acid binding;2.12525369663284e-48!GO:0019538;protein metabolic process;1.15645978323968e-47!GO:0006259;DNA metabolic process;2.32733522240764e-47!GO:0008380;RNA splicing;4.10171099542231e-47!GO:0009059;macromolecule biosynthetic process;1.01929726230596e-46!GO:0031967;organelle envelope;2.35965399548334e-46!GO:0031975;envelope;5.47748343662504e-46!GO:0006397;mRNA processing;7.554251379583e-44!GO:0044267;cellular protein metabolic process;9.96354483305381e-44!GO:0044260;cellular macromolecule metabolic process;3.8774455293807e-43!GO:0031090;organelle membrane;4.36781362243131e-43!GO:0033279;ribosomal subunit;1.58669273292013e-41!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.84820934265973e-39!GO:0033036;macromolecule localization;4.84527327292563e-38!GO:0016043;cellular component organization and biogenesis;1.01021531519004e-36!GO:0015031;protein transport;1.5561800183206e-36!GO:0016070;RNA metabolic process;2.12049187403132e-36!GO:0005654;nucleoplasm;3.28699831019444e-35!GO:0045184;establishment of protein localization;9.88788126081594e-35!GO:0005681;spliceosome;2.28224986404669e-34!GO:0005829;cytosol;7.04482561453055e-34!GO:0007049;cell cycle;8.00560276986391e-34!GO:0005740;mitochondrial envelope;1.3154955552682e-33!GO:0008104;protein localization;1.36683060058886e-33!GO:0006996;organelle organization and biogenesis;5.43434922765393e-33!GO:0000166;nucleotide binding;2.04774629812672e-32!GO:0046907;intracellular transport;2.17375741102905e-32!GO:0019866;organelle inner membrane;6.32874057833519e-32!GO:0006974;response to DNA damage stimulus;1.6781687484951e-31!GO:0031966;mitochondrial membrane;2.83377547060774e-31!GO:0065003;macromolecular complex assembly;3.42744257257818e-31!GO:0043228;non-membrane-bound organelle;9.65028389408696e-31!GO:0043232;intracellular non-membrane-bound organelle;9.65028389408696e-31!GO:0006886;intracellular protein transport;2.48908766589949e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.7111841764766e-29!GO:0006281;DNA repair;7.12754880899783e-29!GO:0005743;mitochondrial inner membrane;7.18722496596495e-29!GO:0022402;cell cycle process;3.03487609355182e-27!GO:0044451;nucleoplasm part;5.24250885206996e-27!GO:0005694;chromosome;8.07763539688896e-27!GO:0022607;cellular component assembly;1.69997007563292e-26!GO:0005730;nucleolus;3.80672172047693e-26!GO:0044445;cytosolic part;1.76650749153245e-25!GO:0031980;mitochondrial lumen;3.35588472856326e-25!GO:0005759;mitochondrial matrix;3.35588472856326e-25!GO:0000278;mitotic cell cycle;1.16197371249644e-24!GO:0051649;establishment of cellular localization;5.68679546439689e-24!GO:0016462;pyrophosphatase activity;6.46274640906743e-24!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.37869439311438e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;1.6983031515004e-23!GO:0006119;oxidative phosphorylation;2.33700348859519e-23!GO:0044427;chromosomal part;2.6910762562201e-23!GO:0032553;ribonucleotide binding;2.96775218406394e-23!GO:0032555;purine ribonucleotide binding;2.96775218406394e-23!GO:0051641;cellular localization;3.30621240526103e-23!GO:0017111;nucleoside-triphosphatase activity;3.86135511773013e-23!GO:0015935;small ribosomal subunit;6.19636443337e-23!GO:0005524;ATP binding;1.99102857882539e-22!GO:0017076;purine nucleotide binding;2.0644872018131e-22!GO:0044455;mitochondrial membrane part;2.40076483750012e-22!GO:0032559;adenyl ribonucleotide binding;3.96968833148103e-22!GO:0042254;ribosome biogenesis and assembly;1.2173973486618e-21!GO:0030554;adenyl nucleotide binding;5.56860309749151e-21!GO:0009719;response to endogenous stimulus;6.76429919241879e-21!GO:0016887;ATPase activity;2.54038660160338e-20!GO:0006260;DNA replication;2.94583523719046e-20!GO:0042623;ATPase activity, coupled;3.27193540841258e-20!GO:0022403;cell cycle phase;3.68968941143755e-20!GO:0051276;chromosome organization and biogenesis;4.44182039601451e-20!GO:0000087;M phase of mitotic cell cycle;6.64733722964409e-20!GO:0015934;large ribosomal subunit;7.20668157048853e-20!GO:0007067;mitosis;2.12524204763656e-19!GO:0006457;protein folding;3.25601039352248e-19!GO:0016874;ligase activity;5.59312597845625e-19!GO:0022618;protein-RNA complex assembly;1.59306529570672e-18!GO:0006605;protein targeting;8.9027619994076e-18!GO:0005746;mitochondrial respiratory chain;1.17235129581968e-17!GO:0044453;nuclear membrane part;1.79559588577035e-17!GO:0000502;proteasome complex (sensu Eukaryota);1.90440271353206e-17!GO:0000398;nuclear mRNA splicing, via spliceosome;3.10332336320603e-17!GO:0000375;RNA splicing, via transesterification reactions;3.10332336320603e-17!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.10332336320603e-17!GO:0005761;mitochondrial ribosome;3.7166350618146e-17!GO:0000313;organellar ribosome;3.7166350618146e-17!GO:0000279;M phase;3.88993577839073e-17!GO:0044265;cellular macromolecule catabolic process;1.48526977542435e-16!GO:0016604;nuclear body;2.16468400232132e-16!GO:0008135;translation factor activity, nucleic acid binding;2.37872484610974e-16!GO:0006512;ubiquitin cycle;2.5266732547767e-16!GO:0051301;cell division;2.912605710244e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.95110140780082e-16!GO:0006399;tRNA metabolic process;6.44152541589705e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.4662001404646e-16!GO:0050136;NADH dehydrogenase (quinone) activity;7.65385736315244e-16!GO:0003954;NADH dehydrogenase activity;7.65385736315244e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.65385736315244e-16!GO:0006325;establishment and/or maintenance of chromatin architecture;7.7308199863214e-16!GO:0051186;cofactor metabolic process;1.41975611895329e-15!GO:0031965;nuclear membrane;1.48299395266503e-15!GO:0043285;biopolymer catabolic process;2.42665970108869e-15!GO:0006323;DNA packaging;2.83509894885575e-15!GO:0006364;rRNA processing;5.57029622864569e-15!GO:0016072;rRNA metabolic process;1.21273688558455e-14!GO:0005643;nuclear pore;1.72421814665603e-14!GO:0050657;nucleic acid transport;1.74634619308289e-14!GO:0051236;establishment of RNA localization;1.74634619308289e-14!GO:0050658;RNA transport;1.74634619308289e-14!GO:0006403;RNA localization;2.36299076383546e-14!GO:0012505;endomembrane system;3.0405894356639e-14!GO:0048770;pigment granule;3.55062805131393e-14!GO:0042470;melanosome;3.55062805131393e-14!GO:0009057;macromolecule catabolic process;4.44404285574153e-14!GO:0006913;nucleocytoplasmic transport;4.5848201458237e-14!GO:0042775;organelle ATP synthesis coupled electron transport;4.82955731320382e-14!GO:0042773;ATP synthesis coupled electron transport;4.82955731320382e-14!GO:0004386;helicase activity;5.00676510185943e-14!GO:0043412;biopolymer modification;5.51787361044848e-14!GO:0030964;NADH dehydrogenase complex (quinone);6.49599601846852e-14!GO:0045271;respiratory chain complex I;6.49599601846852e-14!GO:0005747;mitochondrial respiratory chain complex I;6.49599601846852e-14!GO:0006511;ubiquitin-dependent protein catabolic process;6.50160331924308e-14!GO:0019941;modification-dependent protein catabolic process;6.50160331924308e-14!GO:0043632;modification-dependent macromolecule catabolic process;6.50160331924308e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;6.5740067240759e-14!GO:0044248;cellular catabolic process;7.86472059890437e-14!GO:0065002;intracellular protein transport across a membrane;1.23234708106375e-13!GO:0051169;nuclear transport;1.43236787306105e-13!GO:0044257;cellular protein catabolic process;1.57442453655657e-13!GO:0051726;regulation of cell cycle;1.76979184351608e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.8515282245807e-13!GO:0005635;nuclear envelope;1.96859839117942e-13!GO:0008026;ATP-dependent helicase activity;2.02077474272395e-13!GO:0003743;translation initiation factor activity;2.29205470174752e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.39925848223312e-13!GO:0000074;regulation of progression through cell cycle;2.53042770869561e-13!GO:0016607;nuclear speck;5.06627053446826e-13!GO:0051082;unfolded protein binding;5.06627053446826e-13!GO:0006732;coenzyme metabolic process;6.3810493066455e-13!GO:0000785;chromatin;6.7511649906785e-13!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;9.46170671453025e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;9.91025274676778e-13!GO:0046930;pore complex;2.36241652503798e-12!GO:0051028;mRNA transport;2.67186897082732e-12!GO:0017038;protein import;2.7481599898254e-12!GO:0009259;ribonucleotide metabolic process;2.97566320135157e-12!GO:0006163;purine nucleotide metabolic process;5.55027785086881e-12!GO:0006164;purine nucleotide biosynthetic process;1.59284138711001e-11!GO:0009260;ribonucleotide biosynthetic process;1.61010074807541e-11!GO:0016568;chromatin modification;1.81451245067556e-11!GO:0016779;nucleotidyltransferase activity;1.92784606877362e-11!GO:0006464;protein modification process;2.01000020686851e-11!GO:0044432;endoplasmic reticulum part;2.41124619269443e-11!GO:0008134;transcription factor binding;2.47407380943117e-11!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.30154669496156e-11!GO:0004812;aminoacyl-tRNA ligase activity;3.30154669496156e-11!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.30154669496156e-11!GO:0009150;purine ribonucleotide metabolic process;5.89731973617675e-11!GO:0030163;protein catabolic process;7.16068132432292e-11!GO:0006413;translational initiation;7.47421588294105e-11!GO:0012501;programmed cell death;9.82641274206119e-11!GO:0006915;apoptosis;1.07469024662071e-10!GO:0043038;amino acid activation;1.10964411582135e-10!GO:0006418;tRNA aminoacylation for protein translation;1.10964411582135e-10!GO:0043039;tRNA aminoacylation;1.10964411582135e-10!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.23827717500739e-10!GO:0009152;purine ribonucleotide biosynthetic process;1.64426076550768e-10!GO:0006261;DNA-dependent DNA replication;1.95161679322459e-10!GO:0050794;regulation of cellular process;2.17471358802945e-10!GO:0030532;small nuclear ribonucleoprotein complex;2.98536461968277e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.79305248979603e-10!GO:0008565;protein transporter activity;4.04055708251037e-10!GO:0016740;transferase activity;4.78352421526109e-10!GO:0006333;chromatin assembly or disassembly;7.06354922690247e-10!GO:0006446;regulation of translational initiation;7.08022291341884e-10!GO:0043687;post-translational protein modification;7.14250557803169e-10!GO:0065004;protein-DNA complex assembly;7.28002627009663e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.13509530001565e-09!GO:0000775;chromosome, pericentric region;1.2320028204734e-09!GO:0008219;cell death;1.44748811594842e-09!GO:0016265;death;1.44748811594842e-09!GO:0043566;structure-specific DNA binding;1.55475538792131e-09!GO:0005789;endoplasmic reticulum membrane;2.52225519051338e-09!GO:0019222;regulation of metabolic process;3.03789024202238e-09!GO:0003899;DNA-directed RNA polymerase activity;3.60086444122924e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.86463404693571e-09!GO:0005819;spindle;4.0120516196044e-09!GO:0005783;endoplasmic reticulum;4.68002983671444e-09!GO:0019829;cation-transporting ATPase activity;6.33811970954415e-09!GO:0009141;nucleoside triphosphate metabolic process;7.16135665120266e-09!GO:0009199;ribonucleoside triphosphate metabolic process;7.3748983519032e-09!GO:0051188;cofactor biosynthetic process;7.40266229185691e-09!GO:0048193;Golgi vesicle transport;7.50497484682232e-09!GO:0009055;electron carrier activity;1.04188725312626e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.04266284424838e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.04266284424838e-08!GO:0015986;ATP synthesis coupled proton transport;1.29278435101221e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.29278435101221e-08!GO:0003697;single-stranded DNA binding;1.36651417283939e-08!GO:0000075;cell cycle checkpoint;1.47826081029514e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.61395371125966e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.61395371125966e-08!GO:0016787;hydrolase activity;1.99513391563476e-08!GO:0009060;aerobic respiration;2.16192813492014e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.35945956976863e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.35945956976863e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.87902933867582e-08!GO:0015078;hydrogen ion transmembrane transporter activity;3.01307763072149e-08!GO:0031323;regulation of cellular metabolic process;3.78712797550664e-08!GO:0006606;protein import into nucleus;4.90459751304324e-08!GO:0006752;group transfer coenzyme metabolic process;5.85821114173882e-08!GO:0051170;nuclear import;6.56335292570895e-08!GO:0006461;protein complex assembly;7.2321484741395e-08!GO:0016469;proton-transporting two-sector ATPase complex;8.05670233663142e-08!GO:0008094;DNA-dependent ATPase activity;8.76725189779548e-08!GO:0046034;ATP metabolic process;9.22889903756112e-08!GO:0045333;cellular respiration;9.68492783369166e-08!GO:0009056;catabolic process;9.96829094737333e-08!GO:0006754;ATP biosynthetic process;1.00965513864616e-07!GO:0006753;nucleoside phosphate metabolic process;1.00965513864616e-07!GO:0006350;transcription;1.02282355325554e-07!GO:0016741;transferase activity, transferring one-carbon groups;1.11779913376004e-07!GO:0000245;spliceosome assembly;1.12737450983081e-07!GO:0003712;transcription cofactor activity;1.14630426476352e-07!GO:0005839;proteasome core complex (sensu Eukaryota);1.30882105826977e-07!GO:0008168;methyltransferase activity;1.48997774141161e-07!GO:0006302;double-strand break repair;2.03917765480984e-07!GO:0006084;acetyl-CoA metabolic process;2.31770935226638e-07!GO:0007005;mitochondrion organization and biogenesis;2.49622682979157e-07!GO:0044452;nucleolar part;2.60851000957955e-07!GO:0006099;tricarboxylic acid cycle;2.94926788933031e-07!GO:0046356;acetyl-CoA catabolic process;2.94926788933031e-07!GO:0003724;RNA helicase activity;3.4993197800124e-07!GO:0016192;vesicle-mediated transport;3.5265537295635e-07!GO:0009108;coenzyme biosynthetic process;3.75950974703512e-07!GO:0045259;proton-transporting ATP synthase complex;3.91725656991265e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.3801133385081e-07!GO:0005657;replication fork;4.57749297835445e-07!GO:0009117;nucleotide metabolic process;4.64417421262211e-07!GO:0006793;phosphorus metabolic process;4.85123801731773e-07!GO:0006796;phosphate metabolic process;4.85123801731773e-07!GO:0006366;transcription from RNA polymerase II promoter;5.28467994426526e-07!GO:0015630;microtubule cytoskeleton;5.53203819002683e-07!GO:0051329;interphase of mitotic cell cycle;5.82207483915053e-07!GO:0008639;small protein conjugating enzyme activity;7.10890876172245e-07!GO:0004298;threonine endopeptidase activity;7.54671296844963e-07!GO:0051325;interphase;9.92032381908065e-07!GO:0006310;DNA recombination;9.93976962124299e-07!GO:0016310;phosphorylation;1.01525684195303e-06!GO:0005815;microtubule organizing center;1.45592746405263e-06!GO:0008033;tRNA processing;1.45592746405263e-06!GO:0050789;regulation of biological process;1.60829290892311e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.63991258210184e-06!GO:0005813;centrosome;1.6696986304959e-06!GO:0004842;ubiquitin-protein ligase activity;1.82481571385039e-06!GO:0010468;regulation of gene expression;1.92975415493695e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.99234748023976e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;2.12296555025299e-06!GO:0015399;primary active transmembrane transporter activity;2.12296555025299e-06!GO:0005793;ER-Golgi intermediate compartment;2.27651983489426e-06!GO:0005794;Golgi apparatus;2.61376483308218e-06!GO:0006334;nucleosome assembly;2.81086117594234e-06!GO:0009109;coenzyme catabolic process;2.91065354276416e-06!GO:0031497;chromatin assembly;3.13347346281994e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;3.68602668781243e-06!GO:0008654;phospholipid biosynthetic process;3.87098515827399e-06!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.63567427678151e-06!GO:0051168;nuclear export;4.96361421081365e-06!GO:0003684;damaged DNA binding;5.10367629490007e-06!GO:0042981;regulation of apoptosis;5.59647680188248e-06!GO:0005762;mitochondrial large ribosomal subunit;7.06778026761033e-06!GO:0000315;organellar large ribosomal subunit;7.06778026761033e-06!GO:0019787;small conjugating protein ligase activity;7.21106232799345e-06!GO:0043067;regulation of programmed cell death;7.23793076716626e-06!GO:0006383;transcription from RNA polymerase III promoter;7.39896382229296e-06!GO:0045786;negative regulation of progression through cell cycle;7.50728403481724e-06!GO:0003677;DNA binding;8.35731857969719e-06!GO:0006613;cotranslational protein targeting to membrane;1.01743035424636e-05!GO:0003690;double-stranded DNA binding;1.07770239511909e-05!GO:0032446;protein modification by small protein conjugation;1.11697714578719e-05!GO:0007059;chromosome segregation;1.24621971285078e-05!GO:0051246;regulation of protein metabolic process;1.24882467509875e-05!GO:0000314;organellar small ribosomal subunit;1.30776039725179e-05!GO:0005763;mitochondrial small ribosomal subunit;1.30776039725179e-05!GO:0016363;nuclear matrix;1.34746058334008e-05!GO:0051187;cofactor catabolic process;1.44761478207061e-05!GO:0006888;ER to Golgi vesicle-mediated transport;1.48210032884601e-05!GO:0030880;RNA polymerase complex;1.52013385407698e-05!GO:0007051;spindle organization and biogenesis;1.64944342003867e-05!GO:0043623;cellular protein complex assembly;2.1881106864448e-05!GO:0043492;ATPase activity, coupled to movement of substances;2.30532024624976e-05!GO:0006401;RNA catabolic process;2.42226420188877e-05!GO:0016567;protein ubiquitination;2.70315954784719e-05!GO:0032774;RNA biosynthetic process;2.70998827818676e-05!GO:0051052;regulation of DNA metabolic process;2.72350191977388e-05!GO:0051427;hormone receptor binding;2.74819140355351e-05!GO:0003713;transcription coactivator activity;2.79781070167184e-05!GO:0008186;RNA-dependent ATPase activity;3.00889693587558e-05!GO:0006626;protein targeting to mitochondrion;3.1544333186246e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;3.23696329008541e-05!GO:0006351;transcription, DNA-dependent;3.52660209479999e-05!GO:0003678;DNA helicase activity;3.83300644197034e-05!GO:0006352;transcription initiation;3.94587063520869e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.98184803188948e-05!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;4.02732379237432e-05!GO:0055029;nuclear DNA-directed RNA polymerase complex;4.06985538039137e-05!GO:0000428;DNA-directed RNA polymerase complex;4.06985538039137e-05!GO:0009165;nucleotide biosynthetic process;4.37383125442897e-05!GO:0043681;protein import into mitochondrion;4.71888623847868e-05!GO:0043021;ribonucleoprotein binding;5.77159580673022e-05!GO:0035257;nuclear hormone receptor binding;5.963062310157e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;6.03410612124767e-05!GO:0005667;transcription factor complex;7.21631355654408e-05!GO:0016881;acid-amino acid ligase activity;7.24384354522909e-05!GO:0048475;coated membrane;7.24563454812557e-05!GO:0030117;membrane coat;7.24563454812557e-05!GO:0000151;ubiquitin ligase complex;7.28663209181138e-05!GO:0019752;carboxylic acid metabolic process;8.26093751123791e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;8.28281443054837e-05!GO:0006082;organic acid metabolic process;8.31598228564753e-05!GO:0007093;mitotic cell cycle checkpoint;8.31920981876458e-05!GO:0016491;oxidoreductase activity;8.57659541194481e-05!GO:0031968;organelle outer membrane;8.7565765199076e-05!GO:0004004;ATP-dependent RNA helicase activity;9.478952113601e-05!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;9.56089829789808e-05!GO:0006950;response to stress;9.56089829789808e-05!GO:0006612;protein targeting to membrane;9.56089829789808e-05!GO:0000776;kinetochore;9.73823640463148e-05!GO:0016853;isomerase activity;0.000103518281245683!GO:0006414;translational elongation;0.00011556165488597!GO:0009451;RNA modification;0.000115886318862673!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000121114089663575!GO:0016564;transcription repressor activity;0.000124644762383125!GO:0019867;outer membrane;0.000128071166087541!GO:0048523;negative regulation of cellular process;0.00013010093781812!GO:0045449;regulation of transcription;0.000143089815016131!GO:0022890;inorganic cation transmembrane transporter activity;0.000155560480609016!GO:0006091;generation of precursor metabolites and energy;0.000157447960466559!GO:0000059;protein import into nucleus, docking;0.000167621353177789!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000185557127728642!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000193516521296518!GO:0006405;RNA export from nucleus;0.000194988989196082!GO:0005768;endosome;0.000205976904391363!GO:0016251;general RNA polymerase II transcription factor activity;0.00020669028165765!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000208591218362213!GO:0005885;Arp2/3 protein complex;0.000217017152876987!GO:0005741;mitochondrial outer membrane;0.00023475097520597!GO:0045454;cell redox homeostasis;0.00024922353113441!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000251858163311257!GO:0046474;glycerophospholipid biosynthetic process;0.000264977356711889!GO:0015992;proton transport;0.000281679095937971!GO:0006839;mitochondrial transport;0.000291611166400713!GO:0006818;hydrogen transport;0.000292542826484746!GO:0005637;nuclear inner membrane;0.000300273432096247!GO:0019843;rRNA binding;0.000310906187125421!GO:0004527;exonuclease activity;0.00031343001751495!GO:0003729;mRNA binding;0.000314015048163854!GO:0043069;negative regulation of programmed cell death;0.000333492557888645!GO:0030120;vesicle coat;0.000346885468839266!GO:0030662;coated vesicle membrane;0.000346885468839266!GO:0008610;lipid biosynthetic process;0.000360452586950506!GO:0006417;regulation of translation;0.000363360814597522!GO:0004518;nuclease activity;0.000365393328754533!GO:0006402;mRNA catabolic process;0.000365393328754533!GO:0005684;U2-dependent spliceosome;0.000368439903320309!GO:0006916;anti-apoptosis;0.000395872914596954!GO:0007052;mitotic spindle organization and biogenesis;0.000414167803266663!GO:0043066;negative regulation of apoptosis;0.000418947786637342!GO:0031324;negative regulation of cellular metabolic process;0.000454423504064116!GO:0003682;chromatin binding;0.000463935767552935!GO:0000049;tRNA binding;0.000502880048665209!GO:0007088;regulation of mitosis;0.000502880048665209!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000514630756834185!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000520613984426503!GO:0006520;amino acid metabolic process;0.000546533623158801!GO:0031072;heat shock protein binding;0.000563435549448913!GO:0000922;spindle pole;0.000607403248582149!GO:0007006;mitochondrial membrane organization and biogenesis;0.000647082922978557!GO:0016563;transcription activator activity;0.000667184780705006!GO:0051920;peroxiredoxin activity;0.000699367247585108!GO:0046467;membrane lipid biosynthetic process;0.000704463876214334!GO:0009124;nucleoside monophosphate biosynthetic process;0.000716714344704028!GO:0009123;nucleoside monophosphate metabolic process;0.000716714344704028!GO:0046483;heterocycle metabolic process;0.000782365545879255!GO:0031570;DNA integrity checkpoint;0.000805700271297377!GO:0006270;DNA replication initiation;0.000853527799876111!GO:0006275;regulation of DNA replication;0.000892932605931823!GO:0005770;late endosome;0.000928310949020748!GO:0005758;mitochondrial intermembrane space;0.000965920512419182!GO:0008632;apoptotic program;0.0010531703565701!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00105595995170418!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00105595995170418!GO:0000725;recombinational repair;0.00116609764274025!GO:0000724;double-strand break repair via homologous recombination;0.00116609764274025!GO:0003711;transcription elongation regulator activity;0.00117555514604146!GO:0046489;phosphoinositide biosynthetic process;0.00132027108225611!GO:0000287;magnesium ion binding;0.00136692551507945!GO:0006338;chromatin remodeling;0.00139991439183133!GO:0065009;regulation of a molecular function;0.00140691791764704!GO:0048519;negative regulation of biological process;0.0014122578665392!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00144217232985157!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00144217232985157!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00144217232985157!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00147179928919739!GO:0000178;exosome (RNase complex);0.00164720114169371!GO:0065007;biological regulation;0.00166743635956499!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00166979265732164!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00173113470999012!GO:0005669;transcription factor TFIID complex;0.00175385489742247!GO:0005876;spindle microtubule;0.00185106571194745!GO:0009161;ribonucleoside monophosphate metabolic process;0.00186016023747963!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.00186016023747963!GO:0000082;G1/S transition of mitotic cell cycle;0.00189544440485191!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00191132201786914!GO:0006650;glycerophospholipid metabolic process;0.00191419253367488!GO:0000786;nucleosome;0.00196389560628092!GO:0031326;regulation of cellular biosynthetic process;0.00196389560628092!GO:0006595;polyamine metabolic process;0.00198731035567259!GO:0015980;energy derivation by oxidation of organic compounds;0.00201257486169081!GO:0005525;GTP binding;0.00208897475611684!GO:0048500;signal recognition particle;0.00216270274245867!GO:0030384;phosphoinositide metabolic process;0.00220756092421218!GO:0032508;DNA duplex unwinding;0.00222097532675136!GO:0032392;DNA geometric change;0.00222097532675136!GO:0047485;protein N-terminus binding;0.00222097532675136!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00230834570771811!GO:0006355;regulation of transcription, DNA-dependent;0.00232851521599746!GO:0008312;7S RNA binding;0.00236183225527112!GO:0031252;leading edge;0.0023965498023194!GO:0019899;enzyme binding;0.00241679726978773!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00242224585844158!GO:0009112;nucleobase metabolic process;0.00245205742292981!GO:0051087;chaperone binding;0.00247783191810093!GO:0042802;identical protein binding;0.00251065582933504!GO:0005048;signal sequence binding;0.00270799918243522!GO:0051252;regulation of RNA metabolic process;0.00277618660788759!GO:0031124;mRNA 3'-end processing;0.00279069258794622!GO:0016859;cis-trans isomerase activity;0.0028132789155001!GO:0006284;base-excision repair;0.00285762560639076!GO:0051540;metal cluster binding;0.00288304810116756!GO:0051536;iron-sulfur cluster binding;0.00288304810116756!GO:0008276;protein methyltransferase activity;0.00308274520506564!GO:0044440;endosomal part;0.00340494880827023!GO:0010008;endosome membrane;0.00340494880827023!GO:0006519;amino acid and derivative metabolic process;0.00340494880827023!GO:0004532;exoribonuclease activity;0.00342905619429175!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00342905619429175!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00343070606960706!GO:0000077;DNA damage checkpoint;0.00349532680154683!GO:0009303;rRNA transcription;0.00352716262954328!GO:0042393;histone binding;0.00354123301402262!GO:0016272;prefoldin complex;0.0035720355320981!GO:0006144;purine base metabolic process;0.00386095319448536!GO:0042770;DNA damage response, signal transduction;0.0039922124847186!GO:0006289;nucleotide-excision repair;0.00401593969746704!GO:0004003;ATP-dependent DNA helicase activity;0.00404519283221752!GO:0044431;Golgi apparatus part;0.00404519283221752!GO:0015036;disulfide oxidoreductase activity;0.00433759483144894!GO:0016126;sterol biosynthetic process;0.00435897150754282!GO:0046914;transition metal ion binding;0.00437169187555103!GO:0003887;DNA-directed DNA polymerase activity;0.00437735673163115!GO:0051053;negative regulation of DNA metabolic process;0.00437735673163115!GO:0000792;heterochromatin;0.00451019428064904!GO:0015631;tubulin binding;0.00465494107762557!GO:0000228;nuclear chromosome;0.00480387992720776!GO:0031970;organelle envelope lumen;0.00480387992720776!GO:0009889;regulation of biosynthetic process;0.00488414117885438!GO:0008270;zinc ion binding;0.0049650099029617!GO:0009892;negative regulation of metabolic process;0.00499659315463127!GO:0005788;endoplasmic reticulum lumen;0.00512514616023896!GO:0035258;steroid hormone receptor binding;0.00517762300420657!GO:0000096;sulfur amino acid metabolic process;0.00519419416684708!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00521871043951017!GO:0045047;protein targeting to ER;0.00521871043951017!GO:0007243;protein kinase cascade;0.00529920791747239!GO:0044438;microbody part;0.00532785350921254!GO:0044439;peroxisomal part;0.00532785350921254!GO:0000726;non-recombinational repair;0.00542179958287213!GO:0032259;methylation;0.00542783122711707!GO:0016481;negative regulation of transcription;0.00559986497014599!GO:0000339;RNA cap binding;0.00569781440970097!GO:0043414;biopolymer methylation;0.00576751196762504!GO:0006378;mRNA polyadenylation;0.00580998010937005!GO:0006268;DNA unwinding during replication;0.00590727682342885!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00603345516923802!GO:0030521;androgen receptor signaling pathway;0.00604830128563369!GO:0043284;biopolymer biosynthetic process;0.00614839094010379!GO:0006506;GPI anchor biosynthetic process;0.00614937422894586!GO:0031123;RNA 3'-end processing;0.00616014261362473!GO:0051539;4 iron, 4 sulfur cluster binding;0.00642570762571566!GO:0003714;transcription corepressor activity;0.00656491213618413!GO:0005769;early endosome;0.0066000884656557!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00667346831714534!GO:0043596;nuclear replication fork;0.00705579239445589!GO:0032200;telomere organization and biogenesis;0.00713982178655691!GO:0000723;telomere maintenance;0.00713982178655691!GO:0003924;GTPase activity;0.00714090925507164!GO:0030867;rough endoplasmic reticulum membrane;0.00728185591137691!GO:0004674;protein serine/threonine kinase activity;0.00763419432919671!GO:0016407;acetyltransferase activity;0.00764150689023144!GO:0031903;microbody membrane;0.00766065682872341!GO:0005778;peroxisomal membrane;0.00766065682872341!GO:0006695;cholesterol biosynthetic process;0.00774787788577692!GO:0000819;sister chromatid segregation;0.00777185557764094!GO:0003746;translation elongation factor activity;0.00781289331265825!GO:0005832;chaperonin-containing T-complex;0.00781289331265825!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.00782452933933942!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.00782452933933942!GO:0009126;purine nucleoside monophosphate metabolic process;0.00782452933933942!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.00782452933933942!GO:0006730;one-carbon compound metabolic process;0.00782952864897639!GO:0050662;coenzyme binding;0.00811374053224603!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00816684287984979!GO:0015002;heme-copper terminal oxidase activity;0.00816684287984979!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00816684287984979!GO:0004129;cytochrome-c oxidase activity;0.00816684287984979!GO:0006400;tRNA modification;0.00820917828389813!GO:0000070;mitotic sister chromatid segregation;0.0083169740821074!GO:0016197;endosome transport;0.00856457628526021!GO:0007021;tubulin folding;0.00856556365158137!GO:0006611;protein export from nucleus;0.0088393330151406!GO:0006891;intra-Golgi vesicle-mediated transport;0.00904934788896094!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.00910228540036414!GO:0005773;vacuole;0.0092651818105255!GO:0043488;regulation of mRNA stability;0.00927110630963464!GO:0043487;regulation of RNA stability;0.00927110630963464!GO:0008139;nuclear localization sequence binding;0.00942952739977444!GO:0003725;double-stranded RNA binding;0.00947494363127242!GO:0006505;GPI anchor metabolic process;0.00958734314250395!GO:0005663;DNA replication factor C complex;0.00960989182192609!GO:0001522;pseudouridine synthesis;0.0101216766779609!GO:0005732;small nucleolar ribonucleoprotein complex;0.010147376153366!GO:0032561;guanyl ribonucleotide binding;0.0102876680055953!GO:0019001;guanyl nucleotide binding;0.0102876680055953!GO:0005798;Golgi-associated vesicle;0.0104688594017557!GO:0009116;nucleoside metabolic process;0.0112603445696463!GO:0000209;protein polyubiquitination;0.0115125439789939!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0115972110036407!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0120826526026755!GO:0043189;H4/H2A histone acetyltransferase complex;0.0127942170863162!GO:0006607;NLS-bearing substrate import into nucleus;0.0131647119385308!GO:0030118;clathrin coat;0.0132684444700763!GO:0000323;lytic vacuole;0.0133072104721801!GO:0005764;lysosome;0.0133072104721801!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0133942955194581!GO:0035267;NuA4 histone acetyltransferase complex;0.0134019770997501!GO:0033116;ER-Golgi intermediate compartment membrane;0.0135636682040728!GO:0030518;steroid hormone receptor signaling pathway;0.0138367293004708!GO:0006406;mRNA export from nucleus;0.0143357297983211!GO:0022411;cellular component disassembly;0.015042859752884!GO:0048487;beta-tubulin binding;0.0154597824812657!GO:0043022;ribosome binding;0.0154897711103721!GO:0000139;Golgi membrane;0.0154969185519452!GO:0000175;3'-5'-exoribonuclease activity;0.0155829928643817!GO:0000123;histone acetyltransferase complex;0.0156014092063785!GO:0046822;regulation of nucleocytoplasmic transport;0.0157951198347135!GO:0004576;oligosaccharyl transferase activity;0.0157951198347135!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0157951198347135!GO:0045039;protein import into mitochondrial inner membrane;0.0157951198347135!GO:0006376;mRNA splice site selection;0.0165601804567434!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0165601804567434!GO:0008538;proteasome activator activity;0.0167354545718692!GO:0004448;isocitrate dehydrogenase activity;0.0168519943895511!GO:0006497;protein amino acid lipidation;0.0169121651114864!GO:0006740;NADPH regeneration;0.0175848957504811!GO:0006098;pentose-phosphate shunt;0.0175848957504811!GO:0004523;ribonuclease H activity;0.0175848957504811!GO:0016584;nucleosome positioning;0.0176444814073648!GO:0031577;spindle checkpoint;0.0177016122245639!GO:0007017;microtubule-based process;0.0177341827752535!GO:0044450;microtubule organizing center part;0.0177341827752535!GO:0008180;signalosome;0.0177556746161!GO:0046966;thyroid hormone receptor binding;0.0180298104306072!GO:0008156;negative regulation of DNA replication;0.0184196214429145!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0187278154710822!GO:0006596;polyamine biosynthetic process;0.0195103929900531!GO:0046112;nucleobase biosynthetic process;0.0197091985243284!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.019963513430283!GO:0030663;COPI coated vesicle membrane;0.0201310643260773!GO:0030126;COPI vesicle coat;0.0201310643260773!GO:0030119;AP-type membrane coat adaptor complex;0.020296540769757!GO:0004540;ribonuclease activity;0.0206215890524818!GO:0000152;nuclear ubiquitin ligase complex;0.0206602729826129!GO:0004659;prenyltransferase activity;0.0208710125870814!GO:0008408;3'-5' exonuclease activity;0.0209451633610228!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0209874890571835!GO:0044262;cellular carbohydrate metabolic process;0.0210136724495411!GO:0030174;regulation of DNA replication initiation;0.021836385616399!GO:0008234;cysteine-type peptidase activity;0.021836385616399!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0220747071991867!GO:0008250;oligosaccharyl transferase complex;0.0223864902443824!GO:0016605;PML body;0.0225232693413197!GO:0048471;perinuclear region of cytoplasm;0.0231624057548358!GO:0030508;thiol-disulfide exchange intermediate activity;0.0239350462154093!GO:0009081;branched chain family amino acid metabolic process;0.0241217771288289!GO:0050790;regulation of catalytic activity;0.0244409048617307!GO:0005874;microtubule;0.0245352542326303!GO:0009396;folic acid and derivative biosynthetic process;0.0257286123869766!GO:0043631;RNA polyadenylation;0.0259070729960579!GO:0016408;C-acyltransferase activity;0.0259298487812817!GO:0043601;nuclear replisome;0.0260006864945371!GO:0030894;replisome;0.0260006864945371!GO:0000118;histone deacetylase complex;0.0261664807161997!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0264182662900116!GO:0050178;phenylpyruvate tautomerase activity;0.0264609544838925!GO:0051287;NAD binding;0.026773249881649!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0272738938496921!GO:0000097;sulfur amino acid biosynthetic process;0.0275614906889708!GO:0030131;clathrin adaptor complex;0.0277265194868962!GO:0005652;nuclear lamina;0.0277405625227355!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0279205213864265!GO:0008213;protein amino acid alkylation;0.027994992261516!GO:0006479;protein amino acid methylation;0.027994992261516!GO:0003923;GPI-anchor transamidase activity;0.0281612066964511!GO:0016255;attachment of GPI anchor to protein;0.0281612066964511!GO:0042765;GPI-anchor transamidase complex;0.0281612066964511!GO:0007040;lysosome organization and biogenesis;0.0287987166372601!GO:0006220;pyrimidine nucleotide metabolic process;0.0288174220283962!GO:0004177;aminopeptidase activity;0.0294300554563599!GO:0031647;regulation of protein stability;0.0295395516525603!GO:0006266;DNA ligation;0.0298994767471327!GO:0008017;microtubule binding;0.0300747057618129!GO:0031988;membrane-bound vesicle;0.030225683838653!GO:0022415;viral reproductive process;0.0312167428484786!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0320174493746997!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0322418089641715!GO:0043065;positive regulation of apoptosis;0.0322418089641715!GO:0006368;RNA elongation from RNA polymerase II promoter;0.032348302975808!GO:0031982;vesicle;0.0326175446324973!GO:0030522;intracellular receptor-mediated signaling pathway;0.0326656656541673!GO:0008536;Ran GTPase binding;0.0330528055295778!GO:0006509;membrane protein ectodomain proteolysis;0.0331086387437745!GO:0033619;membrane protein proteolysis;0.0331086387437745!GO:0022406;membrane docking;0.033313242700934!GO:0048278;vesicle docking;0.033313242700934!GO:0030176;integral to endoplasmic reticulum membrane;0.0333249596424136!GO:0032984;macromolecular complex disassembly;0.0343478105668583!GO:0006807;nitrogen compound metabolic process;0.0345366921247438!GO:0046128;purine ribonucleoside metabolic process;0.0345366921247438!GO:0042278;purine nucleoside metabolic process;0.0345366921247438!GO:0033170;DNA-protein loading ATPase activity;0.0347336195084494!GO:0003689;DNA clamp loader activity;0.0347336195084494!GO:0006779;porphyrin biosynthetic process;0.0347336195084494!GO:0033014;tetrapyrrole biosynthetic process;0.0347336195084494!GO:0030137;COPI-coated vesicle;0.0347676723172789!GO:0008022;protein C-terminus binding;0.0347925154331454!GO:0045815;positive regulation of gene expression, epigenetic;0.0348085001502448!GO:0005784;translocon complex;0.0354304496374129!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.03594013500003!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0369476355491898!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0369476355491898!GO:0007033;vacuole organization and biogenesis;0.0370537673380217!GO:0042026;protein refolding;0.0371188389287937!GO:0000080;G1 phase of mitotic cell cycle;0.0374903404884701!GO:0008173;RNA methyltransferase activity;0.0374913242553365!GO:0031371;ubiquitin conjugating enzyme complex;0.0374913242553365!GO:0051098;regulation of binding;0.0374913242553365!GO:0005777;peroxisome;0.0375562914882693!GO:0042579;microbody;0.0375562914882693!GO:0043068;positive regulation of programmed cell death;0.0377174788443095!GO:0008652;amino acid biosynthetic process;0.0381869998290708!GO:0007004;telomere maintenance via telomerase;0.0382079123140021!GO:0003709;RNA polymerase III transcription factor activity;0.0386242803673217!GO:0000303;response to superoxide;0.0386693702044942!GO:0016279;protein-lysine N-methyltransferase activity;0.0386693702044942!GO:0018024;histone-lysine N-methyltransferase activity;0.0386693702044942!GO:0016278;lysine N-methyltransferase activity;0.0386693702044942!GO:0001824;blastocyst development;0.0387467316021081!GO:0030132;clathrin coat of coated pit;0.0387688481082895!GO:0003893;epsilon DNA polymerase activity;0.0400901892610255!GO:0006633;fatty acid biosynthetic process;0.0404078289144405!GO:0042809;vitamin D receptor binding;0.0405074110268537!GO:0042158;lipoprotein biosynthetic process;0.0405658277154216!GO:0005851;eukaryotic translation initiation factor 2B complex;0.0407901147618301!GO:0051656;establishment of organelle localization;0.0411847171635504!GO:0006118;electron transport;0.0415385959289178!GO:0000119;mediator complex;0.0415385959289178!GO:0051235;maintenance of localization;0.0416744185370802!GO:0019206;nucleoside kinase activity;0.0420764450470026!GO:0001832;blastocyst growth;0.042085930192159!GO:0030433;ER-associated protein catabolic process;0.0426397423525124!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0426397423525124!GO:0000781;chromosome, telomeric region;0.0428003860076784!GO:0032039;integrator complex;0.0428003860076784!GO:0006904;vesicle docking during exocytosis;0.0428286955319928!GO:0008415;acyltransferase activity;0.0428971933046655!GO:0006303;double-strand break repair via nonhomologous end joining;0.0430986474496527!GO:0040029;regulation of gene expression, epigenetic;0.0431790068946769!GO:0042054;histone methyltransferase activity;0.0437857532852453!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0437857532852453!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0442271652072977!GO:0006301;postreplication repair;0.0444163660643113!GO:0008097;5S rRNA binding;0.0448617814441949!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.0460024898387012!GO:0006516;glycoprotein catabolic process;0.0463085650493629!GO:0043241;protein complex disassembly;0.046374284013929!GO:0031503;protein complex localization;0.0469302512683799!GO:0048037;cofactor binding;0.0469739833127691!GO:0009308;amine metabolic process;0.0470332087219786!GO:0016746;transferase activity, transferring acyl groups;0.0470690326287235!GO:0016023;cytoplasmic membrane-bound vesicle;0.0472745104673022!GO:0042769;DNA damage response, detection of DNA damage;0.047636558069005!GO:0018196;peptidyl-asparagine modification;0.0476691974779943!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0476691974779943!GO:0008170;N-methyltransferase activity;0.0479234995213658!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0479791014107349!GO:0004815;aspartate-tRNA ligase activity;0.0480417918747561!GO:0006422;aspartyl-tRNA aminoacylation;0.0480417918747561!GO:0005658;alpha DNA polymerase:primase complex;0.0483625394328261!GO:0005666;DNA-directed RNA polymerase III complex;0.049193659925966!GO:0007034;vacuolar transport;0.0495739058570347!GO:0006308;DNA catabolic process;0.0497590331657767 | |||
|sample_id=10827 | |sample_id=10827 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=blood | |sample_tissue=blood | ||
|top_motifs=MYB:2.21701417088;E2F1..5:1.86707680521;YY1:1.76199269368;AIRE:1.70772420317;IKZF2:1.6438924376;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.57515877215;ZBTB16:1.56144577166;HAND1,2:1.49632836851;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.45394918981;POU3F1..4:1.38847103381;ALX1:1.26734603778;DMAP1_NCOR{1,2}_SMARC:1.26047341298;STAT1,3:1.14166253823;ZNF143:1.13081023557;GATA6:1.12335965188;FOX{I1,J2}:1.1190229842;NKX2-2,8:1.10938720149;ELF1,2,4:1.0379299026;TOPORS:1.03367644296;RUNX1..3:1.01942115716;SPIB:1.00994269872;TEF:0.991317398057;PITX1..3:0.956512633069;NR5A1,2:0.822169457679;PAX4:0.774592178844;FOXA2:0.766632053074;ELK1,4_GABP{A,B1}:0.759515374215;CDX1,2,4:0.750108798469;HBP1_HMGB_SSRP1_UBTF:0.71295345849;SPI1:0.690094688843;NRF1:0.68982347884;ARID5B:0.679668794081;FOXP3:0.603250282871;BREu{core}:0.581988848186;NFY{A,B,C}:0.569593533925;GATA4:0.535444933894;ETS1,2:0.528492029655;POU1F1:0.464558531417;EVI1:0.460053125192;HOX{A6,A7,B6,B7}:0.447294645562;HES1:0.407177506518;CUX2:0.38379925284;RXR{A,B,G}:0.3819376304;MYOD1:0.342289765797;NKX6-1,2:0.340323030078;NKX2-3_NKX2-5:0.331947109603;ZNF384:0.283126987604;FOXP1:0.252738606171;FOXD3:0.242929696656;NKX3-2:0.211924742701;NKX3-1:0.197782037663;NANOG{mouse}:0.190368581654;PDX1:0.178961274471;FOXM1:0.163733665884;PRRX1,2:0.162139505451;RBPJ:0.158822234933;CRX:0.157566395936;RXRA_VDR{dimer}:0.139253182796;HOX{A4,D4}:0.115179829174;IRF1,2:0.0977174818411;KLF4:0.0908359871172;HNF4A_NR2F1,2:0.0885785687876;VSX1,2:0.0669652022297;FOXQ1:0.0646957451154;OCT4_SOX2{dimer}:0.0567607617058;TGIF1:0.0555953825728;BPTF:0.0551385645864;PBX1:0.0365899796441;UFEwm:0.0362905779989;PAX8:0.0341975352051;POU5F1:0.0184437150881;SNAI1..3:0.0181158218685;PAX6:-0.0152749412018;FOX{F1,F2,J1}:-0.0427113897886;GCM1,2:-0.0700123298805;ONECUT1,2:-0.0754935273476;CREB1:-0.0831729424615;ATF5_CREB3:-0.0947500365465;TFDP1:-0.0983362729035;STAT5{A,B}:-0.100595025727;NFIL3:-0.114845153441;HSF1,2:-0.143724425695;HOXA9_MEIS1:-0.178717683237;ESR1:-0.192786060766;PAX3,7:-0.208162441723;POU2F1..3:-0.217006326638;RREB1:-0.220768041504;HMGA1,2:-0.230938913604;ALX4:-0.231196832239;HNF1A:-0.232937298758;TLX2:-0.233541832024;ZEB1:-0.244492512299;NFKB1_REL_RELA:-0.248388534933;CDC5L:-0.256108103572;NKX2-1,4:-0.272268054694;EN1,2:-0.27556323285;REST:-0.277859269058;NR6A1:-0.284470180304;RORA:-0.335558731617;NFE2L1:-0.336723148116;PPARG:-0.356981976005;bHLH_family:-0.360346736893;SOX{8,9,10}:-0.376619193816;POU6F1:-0.376679784716;ZIC1..3:-0.395748602791;NR1H4:-0.396017193945;ZNF423:-0.402266071686;AR:-0.410948097131;GFI1:-0.412481255149;NANOG:-0.427756386473;HIF1A:-0.428661200982;ZNF238:-0.429033707888;EP300:-0.440084457554;ZNF148:-0.474797358548;SOX17:-0.500027300866;RFX2..5_RFXANK_RFXAP:-0.513875151043;GZF1:-0.515159548689;TFAP4:-0.515306011847;AHR_ARNT_ARNT2:-0.528855023604;LHX3,4:-0.549581926299;NFE2:-0.55230670012;DBP:-0.554367637329;CEBPA,B_DDIT3:-0.555506589035;FOSL2:-0.555869917518;IRF7:-0.561440890851;FOS_FOS{B,L1}_JUN{B,D}:-0.611932152041;XBP1:-0.62969457476;MEF2{A,B,C,D}:-0.649020292953;BACH2:-0.657772356892;PAX2:-0.659109870268;PRDM1:-0.667495961206;SOX5:-0.67500181808;MYBL2:-0.68957717169;FOXO1,3,4:-0.712587447451;ESRRA:-0.712659988627;ZFP161:-0.718756813407;PAX5:-0.719989635003;MZF1:-0.800037459565;ATF4:-0.811578900233;HLF:-0.813199916273;MYFfamily:-0.875066826785;SMAD1..7,9:-0.8886004523;HIC1:-0.889095009545;RFX1:-0.897169883275;NFATC1..3:-0.917914309136;T:-0.938672717022;TAL1_TCF{3,4,12}:-0.980818085219;SRF:-0.997322779171;LEF1_TCF7_TCF7L1,2:-0.999184692174;HOX{A5,B5}:-1.00665821768;GTF2A1,2:-1.02605809909;SREBF1,2:-1.02703711545;IKZF1:-1.02837647946;STAT2,4,6:-1.02899260664;PATZ1:-1.05803387182;NFE2L2:-1.05922720806;ATF2:-1.07338682409;FOXN1:-1.08930869178;SOX2:-1.10778355538;SPZ1:-1.12472604943;NHLH1,2:-1.12689839308;GTF2I:-1.13688314022;LMO2:-1.14586104396;HMX1:-1.15789165025;EBF1:-1.16746652945;TP53:-1.22901386992;MAFB:-1.23824449024;TFAP2B:-1.26070680783;NFIX:-1.26859150441;GLI1..3:-1.27302210617;ZBTB6:-1.27651830927;FOXL1:-1.30352281687;PAX1,9:-1.34089232015;JUN:-1.34549847419;ATF6:-1.35448820842;TEAD1:-1.36494914914;TFAP2{A,C}:-1.37460334158;MED-1{core}:-1.38928582471;GFI1B:-1.39100025938;EGR1..3:-1.48941975163;TBP:-1.49240409851;MTF1:-1.52908550436;ADNP_IRX_SIX_ZHX:-1.56946985164;FOX{D1,D2}:-1.59163032007;TBX4,5:-1.65830058019;MAZ:-1.67940710889;NR3C1:-1.74092705013;XCPE1{core}:-1.79636078818;TLX1..3_NFIC{dimer}:-1.87020815705;TFCP2:-1.9450601993;MTE{core}:-2.12010335288;SP1:-2.12865473632 | |top_motifs=MYB:2.21701417088;E2F1..5:1.86707680521;YY1:1.76199269368;AIRE:1.70772420317;IKZF2:1.6438924376;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.57515877215;ZBTB16:1.56144577166;HAND1,2:1.49632836851;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.45394918981;POU3F1..4:1.38847103381;ALX1:1.26734603778;DMAP1_NCOR{1,2}_SMARC:1.26047341298;STAT1,3:1.14166253823;ZNF143:1.13081023557;GATA6:1.12335965188;FOX{I1,J2}:1.1190229842;NKX2-2,8:1.10938720149;ELF1,2,4:1.0379299026;TOPORS:1.03367644296;RUNX1..3:1.01942115716;SPIB:1.00994269872;TEF:0.991317398057;PITX1..3:0.956512633069;NR5A1,2:0.822169457679;PAX4:0.774592178844;FOXA2:0.766632053074;ELK1,4_GABP{A,B1}:0.759515374215;CDX1,2,4:0.750108798469;HBP1_HMGB_SSRP1_UBTF:0.71295345849;SPI1:0.690094688843;NRF1:0.68982347884;ARID5B:0.679668794081;FOXP3:0.603250282871;BREu{core}:0.581988848186;NFY{A,B,C}:0.569593533925;GATA4:0.535444933894;ETS1,2:0.528492029655;POU1F1:0.464558531417;EVI1:0.460053125192;HOX{A6,A7,B6,B7}:0.447294645562;HES1:0.407177506518;CUX2:0.38379925284;RXR{A,B,G}:0.3819376304;MYOD1:0.342289765797;NKX6-1,2:0.340323030078;NKX2-3_NKX2-5:0.331947109603;ZNF384:0.283126987604;FOXP1:0.252738606171;FOXD3:0.242929696656;NKX3-2:0.211924742701;NKX3-1:0.197782037663;NANOG{mouse}:0.190368581654;PDX1:0.178961274471;FOXM1:0.163733665884;PRRX1,2:0.162139505451;RBPJ:0.158822234933;CRX:0.157566395936;RXRA_VDR{dimer}:0.139253182796;HOX{A4,D4}:0.115179829174;IRF1,2:0.0977174818411;KLF4:0.0908359871172;HNF4A_NR2F1,2:0.0885785687876;VSX1,2:0.0669652022297;FOXQ1:0.0646957451154;OCT4_SOX2{dimer}:0.0567607617058;TGIF1:0.0555953825728;BPTF:0.0551385645864;PBX1:0.0365899796441;UFEwm:0.0362905779989;PAX8:0.0341975352051;POU5F1:0.0184437150881;SNAI1..3:0.0181158218685;PAX6:-0.0152749412018;FOX{F1,F2,J1}:-0.0427113897886;GCM1,2:-0.0700123298805;ONECUT1,2:-0.0754935273476;CREB1:-0.0831729424615;ATF5_CREB3:-0.0947500365465;TFDP1:-0.0983362729035;STAT5{A,B}:-0.100595025727;NFIL3:-0.114845153441;HSF1,2:-0.143724425695;HOXA9_MEIS1:-0.178717683237;ESR1:-0.192786060766;PAX3,7:-0.208162441723;POU2F1..3:-0.217006326638;RREB1:-0.220768041504;HMGA1,2:-0.230938913604;ALX4:-0.231196832239;HNF1A:-0.232937298758;TLX2:-0.233541832024;ZEB1:-0.244492512299;NFKB1_REL_RELA:-0.248388534933;CDC5L:-0.256108103572;NKX2-1,4:-0.272268054694;EN1,2:-0.27556323285;REST:-0.277859269058;NR6A1:-0.284470180304;RORA:-0.335558731617;NFE2L1:-0.336723148116;PPARG:-0.356981976005;bHLH_family:-0.360346736893;SOX{8,9,10}:-0.376619193816;POU6F1:-0.376679784716;ZIC1..3:-0.395748602791;NR1H4:-0.396017193945;ZNF423:-0.402266071686;AR:-0.410948097131;GFI1:-0.412481255149;NANOG:-0.427756386473;HIF1A:-0.428661200982;ZNF238:-0.429033707888;EP300:-0.440084457554;ZNF148:-0.474797358548;SOX17:-0.500027300866;RFX2..5_RFXANK_RFXAP:-0.513875151043;GZF1:-0.515159548689;TFAP4:-0.515306011847;AHR_ARNT_ARNT2:-0.528855023604;LHX3,4:-0.549581926299;NFE2:-0.55230670012;DBP:-0.554367637329;CEBPA,B_DDIT3:-0.555506589035;FOSL2:-0.555869917518;IRF7:-0.561440890851;FOS_FOS{B,L1}_JUN{B,D}:-0.611932152041;XBP1:-0.62969457476;MEF2{A,B,C,D}:-0.649020292953;BACH2:-0.657772356892;PAX2:-0.659109870268;PRDM1:-0.667495961206;SOX5:-0.67500181808;MYBL2:-0.68957717169;FOXO1,3,4:-0.712587447451;ESRRA:-0.712659988627;ZFP161:-0.718756813407;PAX5:-0.719989635003;MZF1:-0.800037459565;ATF4:-0.811578900233;HLF:-0.813199916273;MYFfamily:-0.875066826785;SMAD1..7,9:-0.8886004523;HIC1:-0.889095009545;RFX1:-0.897169883275;NFATC1..3:-0.917914309136;T:-0.938672717022;TAL1_TCF{3,4,12}:-0.980818085219;SRF:-0.997322779171;LEF1_TCF7_TCF7L1,2:-0.999184692174;HOX{A5,B5}:-1.00665821768;GTF2A1,2:-1.02605809909;SREBF1,2:-1.02703711545;IKZF1:-1.02837647946;STAT2,4,6:-1.02899260664;PATZ1:-1.05803387182;NFE2L2:-1.05922720806;ATF2:-1.07338682409;FOXN1:-1.08930869178;SOX2:-1.10778355538;SPZ1:-1.12472604943;NHLH1,2:-1.12689839308;GTF2I:-1.13688314022;LMO2:-1.14586104396;HMX1:-1.15789165025;EBF1:-1.16746652945;TP53:-1.22901386992;MAFB:-1.23824449024;TFAP2B:-1.26070680783;NFIX:-1.26859150441;GLI1..3:-1.27302210617;ZBTB6:-1.27651830927;FOXL1:-1.30352281687;PAX1,9:-1.34089232015;JUN:-1.34549847419;ATF6:-1.35448820842;TEAD1:-1.36494914914;TFAP2{A,C}:-1.37460334158;MED-1{core}:-1.38928582471;GFI1B:-1.39100025938;EGR1..3:-1.48941975163;TBP:-1.49240409851;MTF1:-1.52908550436;ADNP_IRX_SIX_ZHX:-1.56946985164;FOX{D1,D2}:-1.59163032007;TBX4,5:-1.65830058019;MAZ:-1.67940710889;NR3C1:-1.74092705013;XCPE1{core}:-1.79636078818;TLX1..3_NFIC{dimer}:-1.87020815705;TFCP2:-1.9450601993;MTE{core}:-2.12010335288;SP1:-2.12865473632 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10827-111C8;search_select_hide=table117:FF:10827-111C8 | |||
}} | }} | ||
Latest revision as of 15:07, 3 June 2020
| Name: | acute myeloid leukemia (FAB M0) cell line:KG-1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13053 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13053
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13053
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0326 |
| 10 | 10 | 0.0075 |
| 100 | 100 | 0.452 |
| 101 | 101 | 0.294 |
| 102 | 102 | 0.57 |
| 103 | 103 | 0.365 |
| 104 | 104 | 0.96 |
| 105 | 105 | 0.65 |
| 106 | 106 | 0.712 |
| 107 | 107 | 0.553 |
| 108 | 108 | 0.614 |
| 109 | 109 | 0.153 |
| 11 | 11 | 0.0613 |
| 110 | 110 | 0.15 |
| 111 | 111 | 0.0145 |
| 112 | 112 | 0.311 |
| 113 | 113 | 0.814 |
| 114 | 114 | 0.0332 |
| 115 | 115 | 0.751 |
| 116 | 116 | 0.411 |
| 117 | 117 | 0.0147 |
| 118 | 118 | 0.0318 |
| 119 | 119 | 0.341 |
| 12 | 12 | 0.942 |
| 120 | 120 | 0.203 |
| 121 | 121 | 0.801 |
| 122 | 122 | 0.604 |
| 123 | 123 | 0.00603 |
| 124 | 124 | 0.0966 |
| 125 | 125 | 0.105 |
| 126 | 126 | 0.414 |
| 127 | 127 | 0.198 |
| 128 | 128 | 0.576 |
| 129 | 129 | 0.41 |
| 13 | 13 | 0.0122 |
| 130 | 130 | 0.83 |
| 131 | 131 | 0.759 |
| 132 | 132 | 0.894 |
| 133 | 133 | 0.0894 |
| 134 | 134 | 0.321 |
| 135 | 135 | 0.484 |
| 136 | 136 | 0.44 |
| 137 | 137 | 0.525 |
| 138 | 138 | 0.98 |
| 139 | 139 | 0.199 |
| 14 | 14 | 0.807 |
| 140 | 140 | 0.0041 |
| 141 | 141 | 0.0885 |
| 142 | 142 | 0.475 |
| 143 | 143 | 0.193 |
| 144 | 144 | 0.809 |
| 145 | 145 | 0.583 |
| 146 | 146 | 0.568 |
| 147 | 147 | 0.0832 |
| 148 | 148 | 0.157 |
| 149 | 149 | 0.708 |
| 15 | 15 | 0.0921 |
| 150 | 150 | 0.888 |
| 151 | 151 | 0.963 |
| 152 | 152 | 0.218 |
| 153 | 153 | 0.637 |
| 154 | 154 | 0.856 |
| 155 | 155 | 0.00698 |
| 156 | 156 | 0.558 |
| 157 | 157 | 0.135 |
| 158 | 158 | 0.355 |
| 159 | 159 | 0.951 |
| 16 | 16 | 0.712 |
| 160 | 160 | 0.111 |
| 161 | 161 | 0.0505 |
| 162 | 162 | 0.821 |
| 163 | 163 | 0.355 |
| 164 | 164 | 0.0847 |
| 165 | 165 | 0.924 |
| 166 | 166 | 0.621 |
| 167 | 167 | 0.043 |
| 168 | 168 | 0.242 |
| 169 | 169 | 0.29 |
| 17 | 17 | 0.79 |
| 18 | 18 | 0.59 |
| 19 | 19 | 0.815 |
| 2 | 2 | 0.869 |
| 20 | 20 | 0.626 |
| 21 | 21 | 0.215 |
| 22 | 22 | 0.74 |
| 23 | 23 | 0.225 |
| 24 | 24 | 0.157 |
| 25 | 25 | 0.107 |
| 26 | 26 | 0.0443 |
| 27 | 27 | 0.36 |
| 28 | 28 | 0.876 |
| 29 | 29 | 0.0278 |
| 3 | 3 | 0.0902 |
| 30 | 30 | 0.162 |
| 31 | 31 | 0.501 |
| 32 | 32 | 0.235 |
| 33 | 33 | 0.133 |
| 34 | 34 | 0.869 |
| 35 | 35 | 0.129 |
| 36 | 36 | 0.0428 |
| 37 | 37 | 0.144 |
| 38 | 38 | 0.658 |
| 39 | 39 | 0.578 |
| 4 | 4 | 0.545 |
| 40 | 40 | 0.29 |
| 41 | 41 | 0.712 |
| 42 | 42 | 0.209 |
| 43 | 43 | 0.459 |
| 44 | 44 | 0.0498 |
| 45 | 45 | 0.468 |
| 46 | 46 | 0.0586 |
| 47 | 47 | 0.0317 |
| 48 | 48 | 0.039 |
| 49 | 49 | 0.125 |
| 5 | 5 | 0.815 |
| 50 | 50 | 0.978 |
| 51 | 51 | 0.788 |
| 52 | 52 | 0.195 |
| 53 | 53 | 0.417 |
| 54 | 54 | 0.714 |
| 55 | 55 | 0.625 |
| 56 | 56 | 0.837 |
| 57 | 57 | 0.0702 |
| 58 | 58 | 0.314 |
| 59 | 59 | 0.506 |
| 6 | 6 | 0.572 |
| 60 | 60 | 0.957 |
| 61 | 61 | 0.0705 |
| 62 | 62 | 0.0784 |
| 63 | 63 | 0.373 |
| 64 | 64 | 0.13 |
| 65 | 65 | 0.874 |
| 66 | 66 | 0.185 |
| 67 | 67 | 0.807 |
| 68 | 68 | 0.455 |
| 69 | 69 | 0.84 |
| 7 | 7 | 0.0384 |
| 70 | 70 | 0.285 |
| 71 | 71 | 0.0115 |
| 72 | 72 | 0.708 |
| 73 | 73 | 0.615 |
| 74 | 74 | 0.756 |
| 75 | 75 | 0.0124 |
| 76 | 76 | 0.114 |
| 77 | 77 | 0.965 |
| 78 | 78 | 0.0817 |
| 79 | 79 | 0.557 |
| 8 | 8 | 0.0448 |
| 80 | 80 | 0.135 |
| 81 | 81 | 0.195 |
| 82 | 82 | 0.231 |
| 83 | 83 | 0.464 |
| 84 | 84 | 0.692 |
| 85 | 85 | 0.364 |
| 86 | 86 | 0.855 |
| 87 | 87 | 0.63 |
| 88 | 88 | 0.508 |
| 89 | 89 | 0.542 |
| 9 | 9 | 0.817 |
| 90 | 90 | 0.0121 |
| 91 | 91 | 0.61 |
| 92 | 92 | 0.842 |
| 93 | 93 | 0.444 |
| 94 | 94 | 0.316 |
| 95 | 95 | 0.0485 |
| 96 | 96 | 0.641 |
| 97 | 97 | 0.175 |
| 98 | 98 | 0.19 |
| 99 | 99 | 0.522 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13053
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101883 acute myeloid leukemia cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
8692 (myeloid leukemia)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0101883 (acute myeloid leukemia cell line sample)
0100740 (myeloid leukemia cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
