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Difference between revisions of "FF:11216-116B1"

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{{f5samples
 
{{f5samples
|id=FF:11216-116B1
+
|DRA_sample_Accession=CAGE@SAMD00005200
|name=Urothelial cells, donor0
+
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005200
|sample_id=11216
+
|accession_numbers=CAGE;DRX008528;DRR009400;DRZ000825;DRZ002210;DRZ012175;DRZ013560
|rna_tube_id=116B1
+
|accession_numbers_RNASeq=sRNA-Seq;DRX037135;DRR041501;DRZ007143
|rna_box=116
+
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000483,UBERON:0005910,UBERON:0000479,UBERON:0004119,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0005911,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000486,UBERON:0010317,UBERON:0000365,UBERON:0001008
|rna_position=B1
+
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0000244,CL:0000731
|sample_cell_lot=N/A
 
|sample_cell_catalog=N/A
 
|sample_company=Sciencell
 
|rna_lot_number=
 
|rna_catalog_number=4325
 
|sample_species=Human (Homo sapiens)
 
|sample_strain=
 
|sample_dev_stage=
 
|sample_tissue=bladder
 
|sample_donor(cell lot)=
 
|sample_sex=
 
|sample_age=
 
|sample_ethnicity=
 
|rna_rin=
 
|rna_od260/230=
 
|rna_od260/280=
 
|sample_cell_type=urothelial cell
 
|sample_cell_line=
 
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
 
|sample_experimental_condition=
 
|sample_disease=
 
|rna_sample_type=total RNA
 
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
 
|rna_weight_ug=10
 
|rna_concentration=0.8
 
|sample_note=machine failed, remainder reloaded, low amount
 
|profile_hcage=CNhs10843,LSID700,release009,COMPLETED
 
|profile_cagescan=,,,
 
|profile_srnaseq=SRhi10009,,,
 
|profile_rnaseq=,,,
 
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000144,CL:0000244,CL:0000255,CL:0000548,CL:0000731,CL:0002371
 
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000119,UBERON:0000365,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000483,UBERON:0000486,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0001008,UBERON:0001062,UBERON:0002050,UBERON:0002532,UBERON:0004119,UBERON:0005423,UBERON:0005910,UBERON:0005911,UBERON:0006554
 
 
|ancestors_in_disease_facet=
 
|ancestors_in_disease_facet=
|sample_description=
+
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000191
 +
|comment=
 +
|created_by=
 +
|creation_date=
 +
|data_phase=2
 +
|datafreeze_phase=2
 +
|def=
 +
|expression_enrichment_score=chr1:209979467..209979494,-!p1@IRF6!2.51!356.07!IRF6;;chr1:209979411..209979433,-!p2@IRF6!2.07!116.47!IRF6;;chr11:34642612..34642646,+!p1@EHF!2.04!108.89!EHF;;chr3:189507432..189507459,+!p1@TP63!1.99!96.48!TP63;;chr3:111314186..111314204,-!p1@ZBED2!1.88!74.89!ZBED2;;chr1:6479968..6479986,-!p1@HES2!1.87!72.36!HES2;;chr12:66218255..66218304,+!p3@HMGA2!1.63!109.12!HMGA2;;chr15:83953397..83953425,-!p1@BNC1!1.61!45.03!BNC1;;chr2:176969228..176969260,+!p1@HOXD11!1.61!39.28!HOXD11;;chr12:54785074..54785122,-!p2@ZNF385A!1.56!53.30!ZNF385A;;chr12:54785054..54785072,-!p4@ZNF385A!1.48!33.08!ZNF385A;;chr6:34524025..34524045,-!p3@SPDEF!1.47!28.72!SPDEF;;chr12:66218598..66218645,+!p2@HMGA2!1.44!118.77!HMGA2;;chr17:7493405..7493419,-!p1@SOX15!1.36!22.05!SOX15;;chr19:45908292..45908374,-!p1@PPP1R13L!1.35!185.39!PPP1R13L;;chr6:10415276..10415341,-!p2@TFAP2A!1.34!25.27!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.33!33.77!TFAP2A;;chr17:7492684..7492778,-!p2@SOX15!1.31!40.20!SOX15;;chr6:34524049..34524089,-!p2@SPDEF!1.29!18.38!SPDEF;;chr12:66218836..66218888,+!p1@HMGA2!1.27!159.20!HMGA2;;chr2:176969179..176969226,+!p2@HOXD11!1.25!16.77!HOXD11;;chr6:1312325..1312340,+!p1@FOXQ1!1.23!26.19!FOXQ1;;chr12:66218378..66218401,+!p6@HMGA2!1.20!22.74!HMGA2;;chr2:46524897..46524911,+!p2@EPAS1!1.19!40.43!EPAS1;;chr12:66218212..66218244,+!p5@HMGA2!1.19!20.90!HMGA2;;chr6:34524093..34524135,-!p1@SPDEF!1.19!14.47!SPDEF;;chr7:27205106..27205134,-!p2@HOXA9!1.18!14.24!HOXA9;;chr3:111314230..111314241,-!p2@ZBED2!1.16!13.32!ZBED2;;chr8:49833948..49833973,-!p2@SNAI2!1.15!83.16!SNAI2;;chr8:49833978..49833996,-!p1@SNAI2!1.14!263.72!SNAI2;;chr12:66218183..66218209,+!p4@HMGA2!1.14!24.35!HMGA2;;chr8:102504651..102504683,+!p1@GRHL2!1.14!12.86!GRHL2;;chr11:34645791..34645836,+!p3@EHF!1.13!12.41!EHF;;chr3:12330560..12330579,+!p1@PPARG!1.10!13.32!PPARG;;chr1:209979375..209979386,-!p4@IRF6!1.10!11.72!IRF6;;chr1:209979449..209979460,-!p3@IRF6!1.10!11.72!IRF6;;chr12:66218443..66218461,+!p8@HMGA2!1.08!14.24!HMGA2;;chr12:66218003..66218018,+!p9@HMGA2!1.08!13.55!HMGA2;;chr6:10413188..10413249,-!p7@TFAP2A!1.08!11.03!TFAP2A;;chr8:10588010..10588030,-!p1@SOX7!1.05!10.34!SOX7;;chr17:70117153..70117174,+!p1@SOX9!1.03!102.23!SOX9;;chr12:66218469..66218477,+!p16@HMGA2!1.01!9.19!HMGA2;;chr22:19748231..19748317,+!p1@TBX1!1.00!8.96!TBX1;;chr6:10412576..10412599,-!p5@TFAP2A!0.99!8.73!TFAP2A;;chr17:80797886..80797906,-!p1@ZNF750!0.98!8.50!ZNF750;;chr4:57547454..57547469,-!p1@HOPX!0.96!8.04!HOPX;;chr11:34642656..34642667,+!p2@EHF!0.96!8.04!EHF;;chr14:38064429..38064486,-!p1@FOXA1!0.96!8.04!FOXA1;;chr3:189507460..189507471,+!p3@TP63!0.95!7.81!TP63;;chr3:170076314..170076334,+!p2@SKIL!0.93!9.88!SKIL;;chr2:176994408..176994492,+!p1@HOXD8!0.92!7.35!HOXD8;;chr13:73633131..73633149,+!p1@KLF5!0.90!77.19!KLF5;;chr7:27205136..27205164,-!p1@HOXA9!0.90!6.89!HOXA9;;chr19:42636586..42636607,-!p1@POU2F2!0.89!19.53!POU2F2;;chr6:21597765..21597779,+!p2@SOX4!0.88!56.28!SOX4;;chr16:79634624..79634642,-!p1@MAF!0.88!26.88!MAF;;chr16:86612320..86612394,+!p1@FOXL1!0.87!6.43!FOXL1;;chr12:66218420..66218439,+!p12@HMGA2!0.87!6.43!HMGA2;;chr19:53496768..53496799,-!p1@ZNF702P!0.86!9.88!ZNF702P;;chr10:8096631..8096660,+!p1@GATA3!0.86!7.58!GATA3;;chr10:8096772..8096787,+!p2@GATA3!0.85!7.35!GATA3;;chr2:208030647..208030689,-!p1@KLF7!0.84!53.30!KLF7;;chr19:20278012..20278034,+!p1@ZNF486!0.82!51.00!ZNF486;;chr12:27485762..27485776,+!p3@ARNTL2!0.81!15.62!ARNTL2;;chr12:66357214..66357233,+!p13@HMGA2!0.80!5.28!HMGA2;;chr17:46682321..46682362,-!p1@HOXB6!0.80!5.28!HOXB6;;chr1:37940170..37940190,+!p1@ZC3H12A!0.79!68.92!ZC3H12A;;chr1:151032860..151032918,+!p1@MLLT11!0.79!67.08!MLLT11;;chr1:158979792..158979814,+!p2@IFI16!0.79!53.53!IFI16;;chr1:151032782..151032801,+!p4@MLLT11!0.78!10.57!MLLT11;;chr6:106546808..106546833,+!p3@PRDM1!0.78!6.43!PRDM1;;chr12:115121962..115121987,-!p1@TBX3!0.77!45.26!TBX3;;chr12:96588219..96588263,+!p2@ELK3!0.77!38.82!ELK3;;chr1:151032739..151032748,+!p6@MLLT11!0.77!6.20!MLLT11;;chr2:60778035..60778060,-!p4@BCL11A!0.77!5.97!BCL11A;;chr6:10415484..10415508,-!p3@TFAP2A!0.77!4.82!TFAP2A;;chr15:67458861..67458879,+!p17@SMAD3!0.77!4.82!SMAD3;;chr19:20278043..20278054,+!p2@ZNF486!0.77!4.82!ZNF486;;chr5:137804484..137804498,+!p2@EGR1!0.76!20.68!EGR1;;chr12:27485823..27485868,+!p2@ARNTL2!0.75!20.68!ARNTL2;;chrX:85403445..85403479,+!p2@DACH2!0.75!4.59!DACH2;;chr14:62162285..62162296,+!p3@HIF1A!0.74!25.73!HIF1A;;chr17:38465441..38465481,+!p6@RARA!0.74!5.74!RARA;;chr2:43453734..43453751,-!p1@ZFP36L2!0.71!499.88!ZFP36L2;;chr14:69259772..69259790,-!p1@ZFP36L1!0.71!476.22!ZFP36L1;;chr11:128392273..128392308,-!p2@ETS1!0.71!19.53!ETS1;;chr16:86600426..86600441,+!p1@FOXC2!0.71!11.26!FOXC2;;chr17:46806067..46806097,-!p1@HOXB13!0.71!4.14!HOXB13;;chr12:66218904..66218913,+!p11@HMGA2!0.71!4.14!HMGA2;;chr7:96654026..96654061,-!p2@DLX5!0.71!4.14!DLX5;;chr3:5021268..5021282,+!p4@BHLHE40!0.70!8.96!BHLHE40;;chr12:66218152..66218174,+!p10@HMGA2!0.70!4.36!HMGA2;;chr17:41623692..41623715,-!p1@ETV4!0.69!18.61!ETV4;;chr17:36105074..36105086,-!p2@HNF1B!0.69!3.91!HNF1B;;chr18:42260840..42260860,+!p2@SETBP1!0.69!3.91!SETBP1;;chr12:96588143..96588185,+!p1@ELK3!0.67!51.46!ELK3;;chr2:46524878..46524891,+!p3@EPAS1!0.67!6.89!EPAS1;;chr2:214015343..214015366,-!p3@IKZF2!0.67!3.68!IKZF2;;chr15:83953373..83953386,-!p2@BNC1!0.67!3.68!BNC1;;chr17:45928443..45928473,-!p2@SP6!0.67!3.68!SP6;;chr3:5021113..5021180,+!p1@BHLHE40!0.66!289.91!BHLHE40;;chr16:79633894..79633954,-!p3@MAF!0.66!7.58!MAF;;chr7:27135591..27135658,-!p1@HOXA1!0.66!7.58!HOXA1;;chr21:36260295..36260310,-!p3@RUNX1!0.66!6.20!RUNX1;;chr20:50721803..50721857,-!p2@ZFP64!0.66!5.97!ZFP64;;chr14:62162258..62162269,+!p2@HIF1A!0.65!39.05!HIF1A;;chr20:18038521..18038571,-!p1@OVOL2!0.65!3.45!OVOL2;;chr5:2751762..2751784,-!p1@IRX2!0.65!3.45!IRX2;;chr8:102504690..102504704,+!p3@GRHL2!0.65!3.45!GRHL2;;chr8:102504979..102505010,+!p2@GRHL2!0.65!3.45!GRHL2;;chr2:122042770..122042785,-!p1@TFCP2L1!0.65!3.45!TFCP2L1;;chr12:77459306..77459365,-!p1@E2F7!0.63!48.01!E2F7;;chr12:66218573..66218596,+!p7@HMGA2!0.63!5.28!HMGA2;;chr2:10091815..10091864,+!p1@GRHL1!0.63!4.59!GRHL1;;chr1:10754477..10754517,-!p1@CASZ1!0.62!5.74!CASZ1;;chr17:38465413..38465438,+!p5@RARA!0.62!5.51!RARA;;chr10:8095593..8095625,+!p3@GATA3!0.62!3.91!GATA3;;chr15:83953694..83953708,-!p4@BNC1!0.62!3.22!BNC1;;chr7:63505799..63505904,+!p1@ZNF727!0.62!3.22!ZNF727;;chr2:45236540..45236577,-!p1@SIX2!0.62!3.22!SIX2;;chr19:9811347..9811351,-!p1@ZNF812!0.62!3.22!ZNF812;;chr1:40367668..40367684,-!p2@MYCL1!0.62!3.22!MYCL1;;chr3:193853927..193853944,+!p1@HES1!0.61!119.92!HES1;;chr11:65667884..65667895,-!p2@FOSL1!0.60!13.55!FOSL1;;chr12:115122005..115122016,-!p3@TBX3!0.60!3.68!TBX3;;chr2:176969124..176969155,+!p5@HOXD11!0.60!2.99!HOXD11;;chr3:69915385..69915438,+!p3@MITF!0.60!2.99!MITF;;chr7:27224842..27224872,-!p1@HOXA11!0.60!2.99!HOXA11;;chr17:46806035..46806059,-!p2@HOXB13!0.60!2.99!HOXB13;;chr1:10856694..10856715,-!p3@CASZ1!0.60!2.99!CASZ1;;chr12:125002861..125002894,-!p7@NCOR2!0.59!4.59!NCOR2;;chr3:170075436..170075520,+!p1@SKIL!0.57!72.82!SKIL;;chr2:60780607..60780624,-!p2@BCL11A!0.57!9.88!BCL11A;;chr19:53636125..53636178,-!p1@ZNF415!0.57!8.96!ZNF415;;chr12:80084279..80084293,-!p8@PAWR!0.57!5.05!PAWR;;chr5:134369905..134369972,-!p1@PITX1!0.57!4.59!PITX1;;chr6:10419768..10419819,-!p6@TFAP2A!0.57!2.76!TFAP2A;;chr11:47236584..47236679,+!p1@DDB2!0.56!36.07!DDB2;;chr3:141087339..141087387,+!p2@ZBTB38!0.56!33.77!ZBTB38;;chr7:26191809..26191890,+!p1@NFE2L3!0.56!16.08!NFE2L3;;chr3:5021191..5021202,+!p3@BHLHE40!0.56!8.27!BHLHE40;;chr7:6655225..6655279,+!p1@ENST00000457543!0.56!4.36!ZNF853;;chr3:5021026..5021035,+!p5@BHLHE40!0.56!3.45!BHLHE40;;chr3:169381420..169381535,-!p1@MECOM!0.56!3.22!MECOM;;chr1:59249707..59249727,-!p1@JUN!0.55!137.14!JUN;;chr6:21593973..21593988,+!p1@SOX4!0.55!117.62!SOX4;;chr12:80084303..80084332,-!p1@PAWR!0.55!18.61!PAWR;;chr2:177053386..177053402,+!p1@HOXD1!0.55!2.53!HOXD1;;chr3:189507523..189507535,+!p5@TP63!0.55!2.53!TP63;;chr19:45908286..45908291,-!p3@PPP1R13L!0.55!2.53!PPP1R13L;;chr15:101069113..101069169,-!p1@CERS3!0.55!2.53!CERS3;;chr15:67458836..67458859,+!p22@SMAD3!0.55!2.53!SMAD3;;chr13:41635067..41635100,-!p5@ELF1!0.54!5.28!ELF1;;chr19:17356189..17356221,-!p2@NR2F6!0.54!4.59!NR2F6;;chr21:36260343..36260402,-!p6@RUNX1!0.54!4.36!RUNX1;;chr19:53496806..53496848,-!p2@ZNF702P!0.54!4.14!ZNF702P;;chr12:96588279..96588299,+!p4@ELK3!0.53!14.24!ELK3;;chr16:79634595..79634620,-!p2@MAF!0.53!5.05!MAF;;chr2:214015111..214015179,-!p1@IKZF2!0.53!4.82!IKZF2;;chr5:137801160..137801176,+!p1@EGR1!0.52!302.32!EGR1;;chr19:52873166..52873208,+!p1@ZNF880!0.52!41.35!ZNF880;;chr14:21566731..21566836,-!p1@ZNF219!0.52!32.16!ZNF219;;chr19:53466095..53466149,-!p1@ZNF321P,p1@ZNF816-ZNF321P,p1@ZNF816!0.52!11.95!ZNF816;;chr1:10856639..10856662,-!p2@CASZ1!0.52!2.30!CASZ1;;chr16:86600870..86600921,+!p2@FOXC2!0.52!2.30!FOXC2;;chr18:42260920..42260951,+!p4@SETBP1!0.52!2.30!SETBP1;;chr12:66358080..66358094,+!p15@HMGA2!0.52!2.30!HMGA2;;chr9:22447422..22447483,+!p1@DMRTA1!0.52!2.30!DMRTA1;;chr19:9731872..9731915,-!p1@ZNF561!0.51!37.90!ZNF561;;chr22:38598086..38598105,+!p1@MAFF!0.51!30.78!MAFF;;chr19:53868940..53868990,+!p1@ZNF525,p2@ZNF765!0.51!7.81!ZNF525;;chr19:52674853..52674892,-!p2@ZNF836!0.51!7.35!ZNF836;;chr8:128748308..128748324,+!p2@MYC!0.50!79.94!MYC;;chr19:53360870..53360873,-!p1@ZNF468!0.50!10.11!ZNF468;;chr6:15246200..15246214,+!p2@JARID2!0.50!7.35!JARID2;;chr7:137563945..137564001,-!p6@CREB3L2!0.50!6.20!CREB3L2;;chr17:41622765..41622821,-!p2@ETV4!0.50!3.68!ETV4;;chr19:56988864..56988924,-!p2@ZNF667!0.50!2.99!ZNF667;;chr15:67418119..67418162,+!p5@SMAD3!0.50!2.53!SMAD3;;chr1:59249732..59249749,-!p2@JUN!0.49!33.31!JUN;;chr19:9609272..9609297,-!p1@ZNF560!0.49!2.07!ZNF560;;chr1:151804244..151804310,-!p1@RORC!0.49!2.07!RORC;;chr20:50722202..50722217,-!p7@ZFP64!0.49!2.07!ZFP64;;chrX:57619083..57619113,+!p1@ZXDB!0.49!2.07!ZXDB;;chr5:174151612..174151633,+!p2@MSX2!0.49!2.07!MSX2;;chr6:106546786..106546802,+!p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ZNF282!0.15!18.15!ZNF282;;chr1:200379129..200379174,-!p1@ZNF281!0.15!14.70!ZNF281;;chr19:9251081..9251110,+!p1@ZNF317!0.15!11.95!ZNF317;;chr19:52490043..52490113,-!p1@ZNF350!0.15!9.42!ZNF350;;chr18:51750888..51750920,-!p3@MBD2!0.15!8.50!MBD2;;chr6:33422343..33422394,+!p1@ZBTB9!0.15!7.81!ZBTB9;;chr19:52901094..52901134,+!p1@ZNF528!0.15!7.81!ZNF528;;chr19:53898380..53898422,+!p1@ZNF765!0.15!7.12!ZNF765;;chr4:2263861..2263883,-!p2@MXD4!0.15!6.89!MXD4;;chr13:41635512..41635539,-!p2@ELF1!0.15!6.43!ELF1;;chr6:28317685..28317761,+!p1@ZKSCAN3!0.15!5.74!ZKSCAN3;;chr19:53836985..53837024,+!p1@ZNF845!0.15!5.51!ZNF845;;chr21:30671211..30671234,+!p3@BACH1!0.15!5.51!BACH1;;chr1:935467..935484,-!p1@HES4!0.15!4.82!HES4;;chr4:47916543..47916580,-!p2@NFXL1!0.15!3.45!NFXL1;;chr6:126102292..126102329,+!p3@NCOA7!0.15!3.45!NCOA7;;chr9:2017063..2017144,+!p4@SMARCA2!0.15!3.22!SMARCA2;;chrX:106960221..106960236,-!p3@TSC22D3!0.15!2.76!TSC22D3;;chr13:45011349..45011391,-!p4@TSC22D1!0.15!2.30!TSC22D1;;chr1:149871171..149871192,+!p4@BOLA1!0.15!2.07!BOLA1;;chr2:113993052..113993097,-!p2@PAX8!0.15!2.07!PAX8;;chr19:56652621..56652641,+!p2@ZNF444!0.15!1.84!ZNF444;;chr1:935398..935465,-!p2@HES4!0.15!1.84!HES4;;chr12:122516678..122516687,+!p3@MLXIP!0.15!1.61!MLXIP;;chr14:74353454..74353469,+!p4@ZNF410!0.15!1.61!ZNF410;;chr2:28616316..28616327,+!p5@FOSL2!0.15!1.38!FOSL2;;chr15:77713299..77713316,+!p3@HMG20A!0.15!1.15!HMG20A;;chr7:27788205..27788255,+!p2@TAX1BP1!0.15!1.15!TAX1BP1;;chr14:62203749..62203798,+!p5@HIF1A!0.15!1.15!HIF1A;;chr6:143266185..143266238,-!p2@HIVEP2!0.15!0.92!HIVEP2;;chr6:15245797..15245818,+!p8@JARID2!0.15!0.69!JARID2;;chr6:85473156..85473210,-!p2@TBX18!0.15!0.69!TBX18;;chr19:4067174..4067200,-!p9@ZBTB7A!0.15!0.69!ZBTB7A;;chr2:46602879..46602899,+!p8@EPAS1!0.15!0.69!EPAS1;;chr4:83821967..83821998,+!p3@THAP9!0.15!0.69!THAP9;;chr12:27485889..27485900,+!p4@ARNTL2!0.15!0.69!ARNTL2;;chr14:58817788..58817805,+!p5@ARID4A!0.15!0.69!ARID4A;;chr2:191878874..191878938,-!p1@STAT1!0.14!67.08!STAT1;;chr12:57505121..57505179,-!p1@STAT6!0.14!48.01!STAT6;;chr19:7580944..7581031,+!p1@ZNF358!0.14!36.76!ZNF358;;chr22:35653468..35653501,+!p1@HMGXB4!0.14!31.47!HMGXB4;;chr5:132299290..132299310,-!p2@AFF4!0.14!23.89!AFF4;;chr16:30798492..30798535,-!p1@ZNF629!0.14!19.30!ZNF629;;chr12:11802600..11802685,+!p1@ETV6!0.14!18.15!ETV6;;chr8:42698433..42698486,-!p1@THAP1!0.14!14.93!THAP1;;chr9:14314566..14314618,-!p1@NFIB!0.14!14.47!NFIB;;chr15:77713222..77713271,+!p1@HMG20A!0.14!14.24!HMG20A;;chr19:9695195..9695221,-!p2@ZNF121!0.14!13.78!ZNF121;;chr16:3162557..3162600,+!p1@ZNF205!0.14!9.88!ZNF205;;chr1:157108130..157108173,-!p1@ETV3!0.14!8.27!ETV3;;chr8:145980808..145980922,-!p1@ZNF251!0.14!8.27!ZNF251;;chr12:6798616..6798684,-!p2@ZNF384!0.14!7.81!ZNF384;;chr13:45151434..45151507,-!p3@TSC22D1!0.14!6.20!TSC22D1;;chr9:95640300..95640345,-!p1@ZNF484!0.14!6.20!ZNF484;;chr12:80084333..80084380,-!p4@PAWR!0.14!5.28!PAWR;;chr12:72058130..72058189,+!p2@THAP2!0.14!4.59!THAP2;;chr5:178157651..178157689,-!p1@ZNF354A!0.14!4.36!ZNF354A;;chr19:44455368..44455396,+!p1@ZNF221!0.14!3.45!ZNF221;;chr19:44598534..44598559,+!p2@ZNF224!0.14!2.99!ZNF224;;chr19:36705617..36705644,+!p4@ZNF146!0.14!2.76!ZNF146;;chr1:249153232..249153251,-!p2@ZNF692!0.14!2.07!ZNF692;;chr20:25677443..25677464,-!p2@ZNF337!0.14!2.07!ZNF337;;chr1:154975110..154975149,+!p2@ZBTB7B!0.14!1.84!ZBTB7B;;chr2:208030886..208030917,-!p4@KLF7!0.14!1.61!KLF7;;chr4:38665703..38665713,+!p5@KLF3!0.14!1.61!KLF3;;chr19:57791917..57791937,+!p4@ZNF460!0.14!1.38!ZNF460;;chr19:20011775..20011800,+!p2@ZNF93!0.14!1.38!ZNF93;;chr19:37997297..37997362,+!p3@ZNF793!0.14!1.15!ZNF793;;chr13:46549840..46549882,-!p4@ZC3H13!0.14!0.92!ZC3H13;;chr19:53324884..53324886,-!p1@ZNF28!0.14!0.92!ZNF28;;chr1:61924375..61924380,+!p6@NFIA!0.14!0.92!NFIA;;chr1:43148029..43148040,+!p7@YBX1!0.14!0.69!YBX1;;
 +
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000731;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911
 
|fonse_cell_line=
 
|fonse_cell_line=
 
|fonse_cell_line_closure=
 
|fonse_cell_line_closure=
Line 66: Line 42:
 
|fonse_treatment=
 
|fonse_treatment=
 
|fonse_treatment_closure=
 
|fonse_treatment_closure=
|top_motifs=
+
|has_quality=
 +
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Urothelial%2520cells%252c%2520donor0.CNhs10843.11216-116B1.hg19.nobarcode.bam
 +
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Urothelial%2520cells%252c%2520donor0.CNhs10843.11216-116B1.hg19.ctss.bed.gz
 +
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Urothelial%2520cells%252c%2520donor0.CNhs10843.11216-116B1.hg19.nobarcode.rdna.fa.gz
 +
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Urothelial%2520cells%252c%2520donor0.CNhs10843.11216-116B1.hg38.nobarcode.bam
 +
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Urothelial%2520cells%252c%2520donor0.CNhs10843.11216-116B1.hg38.nobarcode.ctss.bed.gz
 +
|id=FF:11216-116B1
 +
|is_a=EFO:0002091;;FF:0000191
 +
|is_obsolete=
 +
|library_id=CNhs10843
 +
|library_id_phase_based=2:CNhs10843
 +
|microRNAs=
 +
|microRNAs_nn=
 +
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11216
 +
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10009.GGCTAC.11216
 +
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11216
 +
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10009.GGCTAC.11216
 +
|name=Urothelial cells, donor0
 +
|namespace=FANTOM5
 +
|part_of=
 +
|profile_cagescan=,,,
 +
|profile_hcage=CNhs10843,LSID700,release009,COMPLETED
 +
|profile_rnaseq=
 +
|profile_srnaseq=SRhi10009,,,
 +
|refex=http://refex.dbcls.jp/genelist.php?lang
 +
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.00387023867391509,0,-0.110645029445789,-0.282403560576942,0,0,0,0,0,0,0,0,0.164188268760301,0,0.164188268760301,0,0,-0.153323010348428,0,0,0,0.334917486199407,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0.0820941343801505,0,0,0,0.0898074372339897,0,-0.204191773100744,0,0,0,0.164188268760301,0,0,0,0,0.057879113267316,0,0,0,0,0,0,0.0898074372339897,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.0898074372339897,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0396838636779603,0,0,0,0.0313606104221645,0.188977436542289,0,0,0,0,0.0661529175225948,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162701290962634,0,0,0,-0.154037856348354,-0.290978437091745,0,0,0,0,0,0
 +
|repeat_enrich_byname=0,0,0,0,0.0661529175225948,0,0,0,0,0,0,0,0,0,0,0,0.08498013249944,0,0.0733139956452928,0.0206731262368293,0,0,0.111669652045668,0,0,0,0,0.0898074372339897,0,0,0,0,0.700738767593614,0,-0.0504125515893149,0,0,0,0,-0.0118692761017516,-0.141283962138106,0,0.126032604860888,-0.0683442610773682,0,0,0,0,-0.0425672580899029,0,0.0433087849665605,0.00708726891057239,-0.131804150868817,0.337615069557407,-0.055712496781182,0,0,0,0.257375774402873,0.0533926590191651,0,0,0.178510814258524,-0.0915421813266696,0,0,-0.391044581551635,0,0.10675675104036,0.0533969637253405,0,-0.0225197761094234,0,0,0,0,0,0,0,0,0,0,0,-0.0125897482044418,0.049285416682336,0,0,0.376274013361305,0.085330056983064,0.268609010567227,0.0898074372339897,0.00239582117387172,0.440519033791662,0.107950447523243,0,-0.125984009084662,0,-0.138201458249612,-0.155976528537973,0.250000062430327,-0.00695269486554606,-0.147401849371139,0.186292293811458,0.0261844871716846,0.0142033145108157,-0.0567235775078613,0.046123528464862,0.175212811458535,0.0342670146553026,0.0558975749431678,-0.050596911855161,0,0.0898074372339897,0.0371410229863798,0.242985047420658,0,0,-0.0371348887575986,0.25762499151126,0.245845305734427,0.264475649274975,0.112100048101714,0.0361278889216572,-0.0395325284566706,0.0293496195040724,0,-0.255492821011198,0,0,0.0293523957773554,-0.111487132496476,-0.211107811593912,-0.388152761934258,0,0.116603870209816,-0.0683442610773682,0,0.0799163586991685,0.00472228780903006,0,0,0.168981563504717,0,0,0,0,0,-0.264502123008637,-0.256441248468961,-0.00518215031112326,0,-0.0533547510920765,0.0470132709394267,0.0585081612262146,0,-0.0619083684678282,0.127093982887249,0.0898074372339897,0.0904199603378497,0,0.0262089447564406,-0.243682043228938,0.0995222314227218,0.288147435850589,0.0313606104221645,-0.0606369613769172,-0.0177152729602239,0.144865591582066,-0.372621653390546,-0.0480795217478357,-0.0881268324752877,0,-0.396758678117713,0.0857375074316397,0.0202114633979316,-0.0696378436132793,0,-0.0228859207665244,0,-0.335793792093359,0,0.200181185310254,-0.0222839817030503,-0.349481937346697,-0.0820001394747862,0,-0.196634774298109,0.529017168814617,0.11624850822584,0.244259009229505,0,0,-0.0605596461006496,-0.097114634491786,-0.0252212619669912,0.162984255623669,0,0.281691414022397,0,0,0.0662094058811491,-0.145668600530399,0,0.0990719009806581,-0.232928900852091,-0.0860662714251048,0.0482171953253671,0.0898074372339897,0,0.625878796785965,-0.0274879004599529,0,0.543113407992775,0,-0.203465112558953,-0.253326341486756,0,0.844018802574737,0,0,0.154631241819829,0,-0.163319758593164,0,0,0.447134258603561,0,0,0.0449037186169949,0.0898074372339897,0.0312242223018232,0,0,0,0,0,0,0,-0.443864657182554,-0.190645061456147,0.0898074372339897,0.222850217624556,0,0,0,0.164188268760301,0,0,0,0,1.22499026838251,0,-0.12301741567642,0.323977451896974,0,0,0,0.067327492007731,0.0244368491496978,0.0898074372339897,-0.131862706497632,0,0.166079503892502,0,0,-0.0861409897892114,0,0,0,0,0.0320769801803257,-0.0220868023650411,0,0,0,-0.27695440160179,0,0,0,0,-0.0962927156663484,0,0,-0.00701642687553128,0,0.267099331373606,0.00822555768714828,0,-0.0135543793524648,0.403017507622503,1.03083866051303,0,0.164188268760301,-0.0971588630295864,0,0.0277669183213574,-0.0377193178970271,0.0131442392603154,0,0.0239789426708779,0,0,0,0,0,0,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0,0.0660364323787439,-0.0922240566585104,0.164188268760301,0,0,0,0,0,0,0.186877199430594,0.0565090752324722,0,0,0.0132407446777901,0,0,0.0898074372339897,0,0,-0.0951519263019372,0,0,0,0,0,-0.0969923612426051,0,0,0,0,-0.564807121153884,0,0,0.00568876236769167,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104354325208974,-0.373185610052853,0,0,0,0,0,0,0,-0.110645029445789,0,0,0,0,-0.113884373708977,0,0,0,0.0593918839711447,0,0.00387023867391509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.148291912823286,0.0224634770814672,-0.0164594886354074,-0.0278106866177525,0,0,0.0676623133773565,0,0,0,0,0,0,-0.031340424028527,0.00427228279736577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0100456748119065,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.0920328098005262,0,0,0,0,0,0,0.160777351164908,0.292918754895247,-0.0116006249469735,0,0,0,-0.00948185386546015,0,0,0,0.0898074372339897,0.0974108813413998,0,0,0,0,0,0,0,0,0.227673411244422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0.0898074372339897,0,0,0,0,0,0,0,0,0,0,0,0,0.164188268760301,0,-0.0800184682686384,0,0,0,-0.123278792423054,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.405428866950395,0,0,0,0,0,0,0,0,0.0898074372339897,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0.0898074372339897,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.550504042515712,0,0,0,0,0.0421703265730709,0,0,0,0,0,0,0,-0.0442945264140754,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,-0.204191773100744,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,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 +
|rna_box=116
 +
|rna_catalog_number=4325
 +
|rna_concentration=0.8
 +
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
 +
|rna_lot_number=
 +
|rna_od260/230=
 +
|rna_od260/280=
 +
|rna_position=B1
 +
|rna_rin=
 +
|rna_sample_type=total RNA
 +
|rna_tube_id=116B1
 +
|rna_weight_ug=10
 +
|rnaseq_library_id=SRhi10009.GGCTAC
 +
|sample_age=
 +
|sample_category=primary cells
 +
|sample_cell_catalog=N/A
 +
|sample_cell_line=
 +
|sample_cell_lot=N/A
 +
|sample_cell_type=urothelial cell
 +
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
 +
|sample_company=Sciencell
 +
|sample_description=
 +
|sample_dev_stage=
 +
|sample_disease=
 +
|sample_donor(cell lot)=
 +
|sample_ethnicity=
 +
|sample_experimental_condition=
 +
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.64718468487824e-230!GO:0005737;cytoplasm;1.29883316725519e-201!GO:0043226;organelle;1.20586778319971e-175!GO:0043229;intracellular organelle;4.43987557901535e-175!GO:0043231;intracellular membrane-bound organelle;1.05523760508489e-163!GO:0043227;membrane-bound organelle;1.68255155505149e-163!GO:0044444;cytoplasmic part;1.92001647961008e-134!GO:0044422;organelle part;4.2017668642594e-124!GO:0044446;intracellular organelle part;1.46427634785315e-122!GO:0032991;macromolecular complex;1.15194865452079e-79!GO:0044238;primary metabolic process;2.73914577841554e-78!GO:0044237;cellular metabolic process;3.23958710035513e-75!GO:0005515;protein binding;5.07376029823209e-75!GO:0030529;ribonucleoprotein complex;2.07132572973994e-72!GO:0043170;macromolecule metabolic process;1.46795065729425e-69!GO:0043233;organelle lumen;8.87417324147267e-58!GO:0031974;membrane-enclosed lumen;8.87417324147267e-58!GO:0003723;RNA binding;8.13752812061574e-56!GO:0005739;mitochondrion;6.54575853557851e-55!GO:0019538;protein metabolic process;7.0385608644854e-54!GO:0044428;nuclear part;7.11080964780371e-54!GO:0031090;organelle membrane;1.30076950843582e-53!GO:0005634;nucleus;3.7563554048968e-53!GO:0006412;translation;2.64490426784188e-48!GO:0033036;macromolecule localization;3.28154794307322e-47!GO:0015031;protein transport;4.66868483671221e-47!GO:0044267;cellular protein metabolic process;4.11138399546159e-46!GO:0044260;cellular macromolecule metabolic process;4.81636605070398e-46!GO:0005840;ribosome;2.67425699390814e-45!GO:0045184;establishment of protein localization;1.96461195953336e-44!GO:0008104;protein localization;1.96461195953336e-44!GO:0016043;cellular component organization and biogenesis;1.75668160479815e-42!GO:0009058;biosynthetic process;5.14865110499048e-42!GO:0003735;structural constituent of ribosome;3.44178754227563e-40!GO:0043234;protein complex;2.30241767418723e-39!GO:0006396;RNA processing;8.65480660151837e-39!GO:0009059;macromolecule biosynthetic process;1.01208290172328e-38!GO:0005829;cytosol;2.30738394850649e-38!GO:0044249;cellular biosynthetic process;1.84497047609982e-36!GO:0044429;mitochondrial part;2.01855483951591e-36!GO:0043283;biopolymer metabolic process;3.15381818679775e-35!GO:0046907;intracellular transport;6.82688379342138e-35!GO:0033279;ribosomal subunit;5.44630159687359e-34!GO:0031981;nuclear lumen;9.61912268559934e-34!GO:0010467;gene expression;3.08479732858915e-33!GO:0031967;organelle envelope;3.02169999507606e-32!GO:0031975;envelope;6.81968108047616e-32!GO:0016071;mRNA metabolic process;5.47723606761733e-31!GO:0006886;intracellular protein transport;1.92383486072267e-30!GO:0065003;macromolecular complex assembly;3.01219443028125e-30!GO:0008380;RNA splicing;1.12728190057539e-29!GO:0043228;non-membrane-bound organelle;3.50702192743752e-29!GO:0043232;intracellular non-membrane-bound organelle;3.50702192743752e-29!GO:0006397;mRNA processing;4.99947624156471e-27!GO:0022607;cellular component assembly;1.39880694430426e-26!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.27551219248414e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.56851903678486e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.86590031637447e-26!GO:0012505;endomembrane system;8.04472656662005e-26!GO:0005783;endoplasmic reticulum;2.00324959276802e-24!GO:0006996;organelle organization and biogenesis;6.19293824797142e-24!GO:0005740;mitochondrial envelope;1.165441317356e-23!GO:0051641;cellular localization;2.52394962653117e-23!GO:0051649;establishment of cellular localization;2.79505491933454e-23!GO:0005794;Golgi apparatus;3.81958455990604e-22!GO:0031966;mitochondrial membrane;5.27527973794712e-22!GO:0005681;spliceosome;1.00639881862339e-21!GO:0044445;cytosolic part;2.14599365379342e-21!GO:0019866;organelle inner membrane;2.36411351847662e-20!GO:0005654;nucleoplasm;4.9620691229342e-20!GO:0044432;endoplasmic reticulum part;1.05630172812465e-19!GO:0006457;protein folding;1.87501436007481e-19!GO:0006119;oxidative phosphorylation;2.89319262062936e-19!GO:0005743;mitochondrial inner membrane;5.34777041121832e-19!GO:0016874;ligase activity;1.01536486351524e-18!GO:0048770;pigment granule;1.47409195298511e-18!GO:0042470;melanosome;1.47409195298511e-18!GO:0016462;pyrophosphatase activity;1.59783547665953e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.8273254996796e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;2.31463687888474e-18!GO:0000166;nucleotide binding;8.25537705157787e-18!GO:0017111;nucleoside-triphosphatase activity;8.71048723458376e-18!GO:0015934;large ribosomal subunit;1.28417147325818e-17!GO:0015935;small ribosomal subunit;2.83836877781024e-17!GO:0022618;protein-RNA complex assembly;3.0661854465315e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;3.32623193645014e-17!GO:0043285;biopolymer catabolic process;5.22646457638165e-17!GO:0019941;modification-dependent protein catabolic process;6.8596882838772e-17!GO:0043632;modification-dependent macromolecule catabolic process;6.8596882838772e-17!GO:0044257;cellular protein catabolic process;1.01360807265907e-16!GO:0006511;ubiquitin-dependent protein catabolic process;1.32942598639762e-16!GO:0044265;cellular macromolecule catabolic process;1.77054380171121e-16!GO:0006512;ubiquitin cycle;2.76401444100692e-16!GO:0044451;nucleoplasm part;2.8800747080448e-16!GO:0044455;mitochondrial membrane part;6.82055005372105e-16!GO:0030163;protein catabolic process;8.91110033703553e-16!GO:0048193;Golgi vesicle transport;1.60851203735356e-15!GO:0016192;vesicle-mediated transport;1.62355124624745e-15!GO:0009057;macromolecule catabolic process;1.73250735647931e-15!GO:0031980;mitochondrial lumen;2.17549625418812e-15!GO:0005759;mitochondrial matrix;2.17549625418812e-15!GO:0006605;protein targeting;2.78951627018473e-15!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.33088113283881e-15!GO:0012501;programmed cell death;4.54178460986588e-15!GO:0005730;nucleolus;4.90855690025057e-15!GO:0005789;endoplasmic reticulum membrane;8.03876564533618e-15!GO:0006915;apoptosis;9.88947678706487e-15!GO:0008134;transcription factor binding;1.33630516149178e-14!GO:0043412;biopolymer modification;1.35761793130925e-14!GO:0000502;proteasome complex (sensu Eukaryota);1.62187580070918e-14!GO:0044248;cellular catabolic process;1.95026171941815e-14!GO:0051082;unfolded protein binding;2.45470755335028e-14!GO:0006259;DNA metabolic process;2.83806982518226e-14!GO:0051186;cofactor metabolic process;1.44768220441474e-13!GO:0008135;translation factor activity, nucleic acid binding;1.56802895398586e-13!GO:0032553;ribonucleotide binding;1.64610440077468e-13!GO:0032555;purine ribonucleotide binding;1.64610440077468e-13!GO:0006464;protein modification process;1.77744644586879e-13!GO:0005746;mitochondrial respiratory chain;2.17534702303445e-13!GO:0008219;cell death;2.37431617634045e-13!GO:0016265;death;2.37431617634045e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.20260379081906e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.85487735829453e-13!GO:0017076;purine nucleotide binding;3.99694580915047e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.20747032003669e-13!GO:0016070;RNA metabolic process;8.31835025161038e-13!GO:0006461;protein complex assembly;1.86355144048499e-12!GO:0003676;nucleic acid binding;3.96875558084747e-12!GO:0005761;mitochondrial ribosome;4.58014375033897e-12!GO:0000313;organellar ribosome;4.58014375033897e-12!GO:0050136;NADH dehydrogenase (quinone) activity;4.73386869121081e-12!GO:0003954;NADH dehydrogenase activity;4.73386869121081e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.73386869121081e-12!GO:0007049;cell cycle;7.09830307592474e-12!GO:0006732;coenzyme metabolic process;1.47123394490074e-11!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.49802644746285e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;4.35969449922715e-11!GO:0000375;RNA splicing, via transesterification reactions;4.35969449922715e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.35969449922715e-11!GO:0043687;post-translational protein modification;4.54103261431973e-11!GO:0006413;translational initiation;6.72042620811845e-11!GO:0044431;Golgi apparatus part;6.72042620811845e-11!GO:0043067;regulation of programmed cell death;6.76734747117531e-11!GO:0042981;regulation of apoptosis;8.54517026104126e-11!GO:0008565;protein transporter activity;1.07467875477513e-10!GO:0042775;organelle ATP synthesis coupled electron transport;1.54124462243734e-10!GO:0042773;ATP synthesis coupled electron transport;1.54124462243734e-10!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.57460382386892e-10!GO:0003743;translation initiation factor activity;1.68684045434147e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.74289579873604e-10!GO:0005768;endosome;1.92377063345746e-10!GO:0006446;regulation of translational initiation;2.18857596795114e-10!GO:0005793;ER-Golgi intermediate compartment;2.31283962255601e-10!GO:0030964;NADH dehydrogenase complex (quinone);2.46378943005976e-10!GO:0045271;respiratory chain complex I;2.46378943005976e-10!GO:0005747;mitochondrial respiratory chain complex I;2.46378943005976e-10!GO:0042254;ribosome biogenesis and assembly;2.48452160723579e-10!GO:0008639;small protein conjugating enzyme activity;3.36970716730414e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.56527743629242e-10!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.87576187600409e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.9547988146562e-10!GO:0004842;ubiquitin-protein ligase activity;6.24417898036971e-10!GO:0019787;small conjugating protein ligase activity;6.71298636870084e-10!GO:0048523;negative regulation of cellular process;6.86479522749488e-10!GO:0051246;regulation of protein metabolic process;9.48692262223354e-10!GO:0003924;GTPase activity;9.48692262223354e-10!GO:0048475;coated membrane;1.20740698834969e-09!GO:0030117;membrane coat;1.20740698834969e-09!GO:0005524;ATP binding;1.36748699521151e-09!GO:0009056;catabolic process;1.38015497806045e-09!GO:0005635;nuclear envelope;2.04301944024889e-09!GO:0032559;adenyl ribonucleotide binding;2.51138065879077e-09!GO:0050794;regulation of cellular process;2.5780683997344e-09!GO:0006913;nucleocytoplasmic transport;3.01358749884205e-09!GO:0016604;nuclear body;3.02922484413988e-09!GO:0009259;ribonucleotide metabolic process;3.73774842707048e-09!GO:0030120;vesicle coat;4.37356190995636e-09!GO:0030662;coated vesicle membrane;4.37356190995636e-09!GO:0003712;transcription cofactor activity;5.05673979739154e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.2921099156841e-09!GO:0030554;adenyl nucleotide binding;6.86088509205188e-09!GO:0051169;nuclear transport;6.86422976078527e-09!GO:0006163;purine nucleotide metabolic process;7.32280162152937e-09!GO:0000139;Golgi membrane;7.62301224511764e-09!GO:0016881;acid-amino acid ligase activity;9.31874453783984e-09!GO:0031965;nuclear membrane;1.18622643930552e-08!GO:0006974;response to DNA damage stimulus;1.29010033269306e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.35766955232586e-08!GO:0048519;negative regulation of biological process;1.6320780626878e-08!GO:0009150;purine ribonucleotide metabolic process;1.71404024314132e-08!GO:0009055;electron carrier activity;3.03106504641433e-08!GO:0006888;ER to Golgi vesicle-mediated transport;3.41810859953954e-08!GO:0006164;purine nucleotide biosynthetic process;3.42862173543761e-08!GO:0009141;nucleoside triphosphate metabolic process;3.77831030448017e-08!GO:0009260;ribonucleotide biosynthetic process;4.65791036299616e-08!GO:0044453;nuclear membrane part;4.79776976297995e-08!GO:0009199;ribonucleoside triphosphate metabolic process;5.25864675889614e-08!GO:0015986;ATP synthesis coupled proton transport;5.43209679881782e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.43209679881782e-08!GO:0031252;leading edge;5.43582514321671e-08!GO:0016607;nuclear speck;6.03078947528212e-08!GO:0009142;nucleoside triphosphate biosynthetic process;7.60688975526205e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.60688975526205e-08!GO:0009152;purine ribonucleotide biosynthetic process;7.7598416904346e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;9.36772570753267e-08!GO:0009144;purine nucleoside triphosphate metabolic process;9.36772570753267e-08!GO:0031988;membrane-bound vesicle;1.03136893195009e-07!GO:0000074;regulation of progression through cell cycle;1.0831587867095e-07!GO:0022402;cell cycle process;1.11795779488842e-07!GO:0016023;cytoplasmic membrane-bound vesicle;1.12409595491008e-07!GO:0016887;ATPase activity;1.1727549365281e-07!GO:0051726;regulation of cell cycle;1.3024471250335e-07!GO:0006399;tRNA metabolic process;1.30853049795853e-07!GO:0005525;GTP binding;1.32595695401006e-07!GO:0042623;ATPase activity, coupled;1.36205679938505e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.36433137759136e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.36433137759136e-07!GO:0043069;negative regulation of programmed cell death;1.48974539561963e-07!GO:0009060;aerobic respiration;1.69128606569764e-07!GO:0051188;cofactor biosynthetic process;1.92645196453574e-07!GO:0017038;protein import;2.19756149318161e-07!GO:0009967;positive regulation of signal transduction;2.3057967144261e-07!GO:0005773;vacuole;2.37272380658056e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.25602362028208e-07!GO:0004812;aminoacyl-tRNA ligase activity;3.25602362028208e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.25602362028208e-07!GO:0006366;transcription from RNA polymerase II promoter;3.54088643557263e-07!GO:0043066;negative regulation of apoptosis;4.04922702348278e-07!GO:0030532;small nuclear ribonucleoprotein complex;4.28645636073229e-07!GO:0048522;positive regulation of cellular process;4.34674560935295e-07!GO:0043038;amino acid activation;4.86698587023546e-07!GO:0006418;tRNA aminoacylation for protein translation;4.86698587023546e-07!GO:0043039;tRNA aminoacylation;4.86698587023546e-07!GO:0019829;cation-transporting ATPase activity;4.95735556407472e-07!GO:0031982;vesicle;5.33980548363597e-07!GO:0006281;DNA repair;6.20021612730078e-07!GO:0007005;mitochondrion organization and biogenesis;6.75353122362517e-07!GO:0009719;response to endogenous stimulus;6.83999237106769e-07!GO:0046034;ATP metabolic process;6.8672681513484e-07!GO:0007243;protein kinase cascade;7.87162407266517e-07!GO:0006754;ATP biosynthetic process;8.37941280151674e-07!GO:0006753;nucleoside phosphate metabolic process;8.37941280151674e-07!GO:0031410;cytoplasmic vesicle;8.47275187137115e-07!GO:0006916;anti-apoptosis;9.68559260242125e-07!GO:0045333;cellular respiration;9.75164665776547e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.07088740460957e-06!GO:0005770;late endosome;1.18827160563379e-06!GO:0000278;mitotic cell cycle;1.19215793172752e-06!GO:0032446;protein modification by small protein conjugation;1.19215793172752e-06!GO:0004386;helicase activity;1.31855784480861e-06!GO:0044440;endosomal part;1.62229143220384e-06!GO:0010008;endosome membrane;1.62229143220384e-06!GO:0005643;nuclear pore;1.62862296427633e-06!GO:0006752;group transfer coenzyme metabolic process;1.70218206073863e-06!GO:0016740;transferase activity;1.85350798101643e-06!GO:0016072;rRNA metabolic process;1.93278540643414e-06!GO:0006099;tricarboxylic acid cycle;1.93278540643414e-06!GO:0046356;acetyl-CoA catabolic process;1.93278540643414e-06!GO:0016567;protein ubiquitination;2.04604290670674e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.194233349484e-06!GO:0009109;coenzyme catabolic process;2.22961224568305e-06!GO:0051187;cofactor catabolic process;2.31169066137034e-06!GO:0000323;lytic vacuole;2.37110193104191e-06!GO:0005764;lysosome;2.37110193104191e-06!GO:0009108;coenzyme biosynthetic process;2.5643097217292e-06!GO:0006364;rRNA processing;2.57488222333535e-06!GO:0065002;intracellular protein transport across a membrane;2.60627107788309e-06!GO:0005798;Golgi-associated vesicle;2.78228343497467e-06!GO:0032561;guanyl ribonucleotide binding;3.04213378460893e-06!GO:0019001;guanyl nucleotide binding;3.04213378460893e-06!GO:0005839;proteasome core complex (sensu Eukaryota);3.08379517250115e-06!GO:0016469;proton-transporting two-sector ATPase complex;3.53611860909332e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.96412008557163e-06!GO:0050789;regulation of biological process;3.98001287673422e-06!GO:0005788;endoplasmic reticulum lumen;5.26738817079695e-06!GO:0009117;nucleotide metabolic process;6.53139046753681e-06!GO:0006084;acetyl-CoA metabolic process;6.53139046753681e-06!GO:0006613;cotranslational protein targeting to membrane;7.67633545701781e-06!GO:0000245;spliceosome assembly;8.29448745213853e-06!GO:0001726;ruffle;8.38288043148052e-06!GO:0030036;actin cytoskeleton organization and biogenesis;8.82558037033744e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;9.29514770733529e-06!GO:0016787;hydrolase activity;9.37836326930812e-06!GO:0042802;identical protein binding;1.02918875304825e-05!GO:0008026;ATP-dependent helicase activity;1.08912376858005e-05!GO:0045259;proton-transporting ATP synthase complex;1.15363372315237e-05!GO:0051170;nuclear import;1.15610379229597e-05!GO:0050657;nucleic acid transport;1.15610379229597e-05!GO:0051236;establishment of RNA localization;1.15610379229597e-05!GO:0050658;RNA transport;1.15610379229597e-05!GO:0006403;RNA localization;1.34202844283197e-05!GO:0043623;cellular protein complex assembly;1.41537157519682e-05!GO:0065009;regulation of a molecular function;1.41850680919239e-05!GO:0007264;small GTPase mediated signal transduction;1.69351026697371e-05!GO:0008092;cytoskeletal protein binding;1.7045588783459e-05!GO:0006793;phosphorus metabolic process;1.71693832383006e-05!GO:0006796;phosphate metabolic process;1.71693832383006e-05!GO:0004298;threonine endopeptidase activity;1.90464490641748e-05!GO:0008654;phospholipid biosynthetic process;2.00212706828443e-05!GO:0019899;enzyme binding;2.02373560229961e-05!GO:0006323;DNA packaging;2.38183632757849e-05!GO:0006606;protein import into nucleus;2.46581109799388e-05!GO:0030118;clathrin coat;2.77950958643679e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.21655467899153e-05!GO:0046930;pore complex;3.4677567956921e-05!GO:0048518;positive regulation of biological process;4.01334781760224e-05!GO:0051276;chromosome organization and biogenesis;4.39496043909055e-05!GO:0016563;transcription activator activity;4.60058353728509e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.77839383617127e-05!GO:0016859;cis-trans isomerase activity;5.07218388453461e-05!GO:0031324;negative regulation of cellular metabolic process;5.79649178438394e-05!GO:0016491;oxidoreductase activity;6.05658553085909e-05!GO:0030029;actin filament-based process;6.52575864946191e-05!GO:0006612;protein targeting to membrane;8.26006184462088e-05!GO:0005769;early endosome;8.41359696766822e-05!GO:0016779;nucleotidyltransferase activity;8.41359696766822e-05!GO:0003713;transcription coactivator activity;8.9330916292176e-05!GO:0016310;phosphorylation;9.21558573680112e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000111531495757572!GO:0016853;isomerase activity;0.000113146273983881!GO:0030867;rough endoplasmic reticulum membrane;0.000118848406900951!GO:0045786;negative regulation of progression through cell cycle;0.000124916916589642!GO:0016126;sterol biosynthetic process;0.000125618413623974!GO:0003714;transcription corepressor activity;0.000130719306451131!GO:0005762;mitochondrial large ribosomal subunit;0.000141673914283532!GO:0000315;organellar large ribosomal subunit;0.000141673914283532!GO:0030119;AP-type membrane coat adaptor complex;0.000141951178904451!GO:0031968;organelle outer membrane;0.000143734921186239!GO:0043566;structure-specific DNA binding;0.000150005646980857!GO:0043021;ribonucleoprotein binding;0.000151648819964198!GO:0003724;RNA helicase activity;0.000155186064225822!GO:0016568;chromatin modification;0.000171912118318788!GO:0051789;response to protein stimulus;0.000174873381127794!GO:0006986;response to unfolded protein;0.000174873381127794!GO:0006260;DNA replication;0.000180910643192474!GO:0009892;negative regulation of metabolic process;0.000186599115570176!GO:0019867;outer membrane;0.000190919979925524!GO:0033116;ER-Golgi intermediate compartment membrane;0.00020170075817781!GO:0005667;transcription factor complex;0.000222083987633402!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000226552049521543!GO:0016564;transcription repressor activity;0.000232834255712561!GO:0030131;clathrin adaptor complex;0.000265155603111712!GO:0005905;coated pit;0.000270137555500095!GO:0051427;hormone receptor binding;0.000274812211066293!GO:0045454;cell redox homeostasis;0.000278405879638536!GO:0003697;single-stranded DNA binding;0.000279812406431256!GO:0051301;cell division;0.000288145405972182!GO:0048471;perinuclear region of cytoplasm;0.000289481494257181!GO:0005741;mitochondrial outer membrane;0.000293076221972601!GO:0016044;membrane organization and biogenesis;0.000295776691589975!GO:0030133;transport vesicle;0.000300996656102258!GO:0051028;mRNA transport;0.000310576814299593!GO:0030658;transport vesicle membrane;0.000336437927837006!GO:0008250;oligosaccharyl transferase complex;0.000337841552724835!GO:0004576;oligosaccharyl transferase activity;0.000389719409910722!GO:0007010;cytoskeleton organization and biogenesis;0.000390812149321203!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000414967597590805!GO:0015630;microtubule cytoskeleton;0.000433972315683595!GO:0005694;chromosome;0.000434568205911654!GO:0005885;Arp2/3 protein complex;0.000439832372901928!GO:0035257;nuclear hormone receptor binding;0.000458398017804937!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000459439482398679!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000459469435440104!GO:0005048;signal sequence binding;0.00050446357768719!GO:0008610;lipid biosynthetic process;0.000514546897151377!GO:0000151;ubiquitin ligase complex;0.000530520245467738!GO:0006417;regulation of translation;0.000535955357577711!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00063185637836465!GO:0030027;lamellipodium;0.000634960516297513!GO:0030031;cell projection biogenesis;0.000637431980760263!GO:0000087;M phase of mitotic cell cycle;0.000654110462873523!GO:0006891;intra-Golgi vesicle-mediated transport;0.000701862889633011!GO:0065004;protein-DNA complex assembly;0.00070346195793111!GO:0050790;regulation of catalytic activity;0.000752706437915341!GO:0007067;mitosis;0.000765560320960338!GO:0008632;apoptotic program;0.000854575399645244!GO:0051252;regulation of RNA metabolic process;0.000863742409545136!GO:0005813;centrosome;0.000886972204409144!GO:0043065;positive regulation of apoptosis;0.00093445585579955!GO:0045045;secretory pathway;0.000988077459314287!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00100555067523368!GO:0006695;cholesterol biosynthetic process;0.00100580356474419!GO:0016197;endosome transport;0.00100722485870781!GO:0018196;peptidyl-asparagine modification;0.00104638591216105!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00104638591216105!GO:0043068;positive regulation of programmed cell death;0.00108525489321485!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00112427166111863!GO:0019222;regulation of metabolic process;0.00115352559228335!GO:0030663;COPI coated vesicle membrane;0.00117741716361914!GO:0030126;COPI vesicle coat;0.00117741716361914!GO:0051920;peroxiredoxin activity;0.00119439206274373!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00119650405521359!GO:0030132;clathrin coat of coated pit;0.00119950475622196!GO:0048468;cell development;0.00125209336053352!GO:0030660;Golgi-associated vesicle membrane;0.00125221160251399!GO:0031072;heat shock protein binding;0.00130192269077857!GO:0000314;organellar small ribosomal subunit;0.00131950763791952!GO:0005763;mitochondrial small ribosomal subunit;0.00131950763791952!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0013432757080574!GO:0000785;chromatin;0.0013739403081434!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00141427569098293!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00141427569098293!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00141427569098293!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00148153312502441!GO:0016481;negative regulation of transcription;0.00153768034476813!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00169635871771434!GO:0006333;chromatin assembly or disassembly;0.00169760036553277!GO:0048500;signal recognition particle;0.00180967960952822!GO:0005791;rough endoplasmic reticulum;0.00189893491582377!GO:0030176;integral to endoplasmic reticulum membrane;0.00212172730322492!GO:0043488;regulation of mRNA stability;0.00212691751253967!GO:0043487;regulation of RNA stability;0.00212691751253967!GO:0065007;biological regulation;0.00212691751253967!GO:0046474;glycerophospholipid biosynthetic process;0.00221082182247606!GO:0022403;cell cycle phase;0.0022140807577609!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.002215832490042!GO:0015399;primary active transmembrane transporter activity;0.002215832490042!GO:0030137;COPI-coated vesicle;0.00228156420901706!GO:0051168;nuclear export;0.00230801076989094!GO:0008186;RNA-dependent ATPase activity;0.00248254102884095!GO:0005815;microtubule organizing center;0.00251274103582936!GO:0030134;ER to Golgi transport vesicle;0.00253802182406561!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00283449074887842!GO:0030127;COPII vesicle coat;0.00283449074887842!GO:0012507;ER to Golgi transport vesicle membrane;0.00283449074887842!GO:0044427;chromosomal part;0.00283449074887842!GO:0030659;cytoplasmic vesicle membrane;0.00298664155979534!GO:0006091;generation of precursor metabolites and energy;0.00299465898864063!GO:0030125;clathrin vesicle coat;0.00306690334540636!GO:0030665;clathrin coated vesicle membrane;0.00306690334540636!GO:0051098;regulation of binding;0.00307445386870804!GO:0019843;rRNA binding;0.00311398148031602!GO:0046489;phosphoinositide biosynthetic process;0.00315082960088815!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00330550634816811!GO:0032940;secretion by cell;0.0034298254542699!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00366952796731837!GO:0015980;energy derivation by oxidation of organic compounds;0.00376624359439434!GO:0030833;regulation of actin filament polymerization;0.00382717277172085!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00398285069827648!GO:0046467;membrane lipid biosynthetic process;0.00400791256913692!GO:0008637;apoptotic mitochondrial changes;0.00404488957109461!GO:0007006;mitochondrial membrane organization and biogenesis;0.0040959964827993!GO:0016363;nuclear matrix;0.00413399062036432!GO:0031326;regulation of cellular biosynthetic process;0.00418630381128614!GO:0031902;late endosome membrane;0.00419351949718536!GO:0008139;nuclear localization sequence binding;0.00422833112188457!GO:0008361;regulation of cell size;0.00435642412844996!GO:0007242;intracellular signaling cascade;0.00439485677306935!GO:0051128;regulation of cellular component organization and biogenesis;0.00457528778770257!GO:0006626;protein targeting to mitochondrion;0.00463963051736437!GO:0009889;regulation of biosynthetic process;0.00466952060243491!GO:0016125;sterol metabolic process;0.00472421018448331!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00476238937139332!GO:0045047;protein targeting to ER;0.00476238937139332!GO:0006839;mitochondrial transport;0.00488933314078746!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0050127330740113!GO:0005774;vacuolar membrane;0.00509700546660071!GO:0009165;nucleotide biosynthetic process;0.00545974248391688!GO:0006650;glycerophospholipid metabolic process;0.00547150400682866!GO:0006402;mRNA catabolic process;0.00555847563007846!GO:0015631;tubulin binding;0.00556655891801738!GO:0005684;U2-dependent spliceosome;0.00558901670458595!GO:0006383;transcription from RNA polymerase III promoter;0.00583811720849191!GO:0006979;response to oxidative stress;0.00603879267032472!GO:0003729;mRNA binding;0.00617061855176111!GO:0004004;ATP-dependent RNA helicase activity;0.00620327832021461!GO:0009966;regulation of signal transduction;0.00639568018850881!GO:0048487;beta-tubulin binding;0.00640731860806976!GO:0008047;enzyme activator activity;0.00644260943331274!GO:0016049;cell growth;0.00644260943331274!GO:0008312;7S RNA binding;0.0064862982555702!GO:0051329;interphase of mitotic cell cycle;0.00668859433594879!GO:0051101;regulation of DNA binding;0.00670087292366151!GO:0045893;positive regulation of transcription, DNA-dependent;0.00671578948162538!GO:0005856;cytoskeleton;0.00683608018822024!GO:0006509;membrane protein ectodomain proteolysis;0.00695588881121679!GO:0033619;membrane protein proteolysis;0.00695588881121679!GO:0043681;protein import into mitochondrion;0.00699194728054452!GO:0055092;sterol homeostasis;0.00716814477821874!GO:0042632;cholesterol homeostasis;0.00716814477821874!GO:0008234;cysteine-type peptidase activity;0.00727178283954559!GO:0003899;DNA-directed RNA polymerase activity;0.00732958098372718!GO:0051287;NAD binding;0.00743457544803321!GO:0001558;regulation of cell growth;0.00750198261315966!GO:0044433;cytoplasmic vesicle part;0.00753979055516534!GO:0030521;androgen receptor signaling pathway;0.00757564733428691!GO:0006414;translational elongation;0.00757564733428691!GO:0030880;RNA polymerase complex;0.00761455818809227!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00799964372273132!GO:0000049;tRNA binding;0.00821716254188369!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00831319080490657!GO:0046822;regulation of nucleocytoplasmic transport;0.00836275002281318!GO:0007265;Ras protein signal transduction;0.00846248915088578!GO:0017166;vinculin binding;0.00855495282776478!GO:0048144;fibroblast proliferation;0.00895265176667649!GO:0048145;regulation of fibroblast proliferation;0.00895265176667649!GO:0006401;RNA catabolic process;0.0090548358448978!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00921092718567052!GO:0015992;proton transport;0.00921092718567052!GO:0030041;actin filament polymerization;0.00939471723554295!GO:0046483;heterocycle metabolic process;0.00977280328180753!GO:0006818;hydrogen transport;0.009899751433467!GO:0006595;polyamine metabolic process;0.0103316671538649!GO:0004674;protein serine/threonine kinase activity;0.0105860439964591!GO:0055088;lipid homeostasis;0.0106224886418175!GO:0051336;regulation of hydrolase activity;0.0107912556106854!GO:0003690;double-stranded DNA binding;0.0107921475130753!GO:0048146;positive regulation of fibroblast proliferation;0.0109303996575701!GO:0005869;dynactin complex;0.0109303996575701!GO:0006892;post-Golgi vesicle-mediated transport;0.0109436962313175!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0115375008844582!GO:0031625;ubiquitin protein ligase binding;0.0117803043246147!GO:0030032;lamellipodium biogenesis;0.0118283518476992!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0118707935933973!GO:0030384;phosphoinositide metabolic process;0.0118935571095977!GO:0051338;regulation of transferase activity;0.0119299443755225!GO:0003711;transcription elongation regulator activity;0.0120173618375165!GO:0051087;chaperone binding;0.0120357749317838!GO:0012506;vesicle membrane;0.0121634956497548!GO:0043492;ATPase activity, coupled to movement of substances;0.0121883307491943!GO:0022890;inorganic cation transmembrane transporter activity;0.0123064114422175!GO:0044255;cellular lipid metabolic process;0.0124386253221929!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0125042985816105!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0125042985816105!GO:0044437;vacuolar part;0.0126057584353291!GO:0000059;protein import into nucleus, docking;0.0127032512989367!GO:0035258;steroid hormone receptor binding;0.0129796837661465!GO:0005149;interleukin-1 receptor binding;0.0129844040485337!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0130805843815045!GO:0043022;ribosome binding;0.0131054259853727!GO:0006917;induction of apoptosis;0.0132915399452458!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0134375557366707!GO:0008283;cell proliferation;0.0134691518860189!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0139998516410613!GO:0000428;DNA-directed RNA polymerase complex;0.0139998516410613!GO:0045941;positive regulation of transcription;0.0143772583302551!GO:0050662;coenzyme binding;0.0143772583302551!GO:0008154;actin polymerization and/or depolymerization;0.0143772583302551!GO:0051325;interphase;0.015006309637408!GO:0031529;ruffle organization and biogenesis;0.015456585060585!GO:0005765;lysosomal membrane;0.0156505273070904!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0159553890931196!GO:0007050;cell cycle arrest;0.0159553890931196!GO:0001836;release of cytochrome c from mitochondria;0.0161877506715833!GO:0006352;transcription initiation;0.0161877506715833!GO:0019752;carboxylic acid metabolic process;0.0162017832227128!GO:0016272;prefoldin complex;0.0167430768027838!GO:0022406;membrane docking;0.0167847912412428!GO:0048278;vesicle docking;0.0167847912412428!GO:0035035;histone acetyltransferase binding;0.0168759378007702!GO:0006082;organic acid metabolic process;0.0169115969820551!GO:0000209;protein polyubiquitination;0.0172336587084838!GO:0012502;induction of programmed cell death;0.0173222678852153!GO:0006950;response to stress;0.0179318990529408!GO:0045792;negative regulation of cell size;0.0180172531600342!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0182647259410662!GO:0005832;chaperonin-containing T-complex;0.0182874034587784!GO:0030145;manganese ion binding;0.0183888943435226!GO:0019904;protein domain specific binding;0.0184044900883656!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0184357373484604!GO:0007034;vacuolar transport;0.0184990347018871!GO:0007266;Rho protein signal transduction;0.0185635774783954!GO:0008180;signalosome;0.0188995966368027!GO:0006611;protein export from nucleus;0.0196176185467076!GO:0032984;macromolecular complex disassembly;0.020259079912221!GO:0003779;actin binding;0.0212556202435893!GO:0009112;nucleobase metabolic process;0.0212556202435893!GO:0033673;negative regulation of kinase activity;0.0212556202435893!GO:0006469;negative regulation of protein kinase activity;0.0212556202435893!GO:0051052;regulation of DNA metabolic process;0.0219860407472114!GO:0008064;regulation of actin polymerization and/or depolymerization;0.022022663075363!GO:0003746;translation elongation factor activity;0.0221513746452261!GO:0030308;negative regulation of cell growth;0.022992583941021!GO:0006643;membrane lipid metabolic process;0.0231190297831459!GO:0043549;regulation of kinase activity;0.0234800680724914!GO:0045892;negative regulation of transcription, DNA-dependent;0.0236821181657425!GO:0016408;C-acyltransferase activity;0.0239727180234425!GO:0006289;nucleotide-excision repair;0.0241013319545597!GO:0016251;general RNA polymerase II transcription factor activity;0.0252798993215726!GO:0043281;regulation of caspase activity;0.0252821582392829!GO:0001666;response to hypoxia;0.0253686064258215!GO:0006354;RNA elongation;0.0253976836283195!GO:0008243;plasminogen activator activity;0.0255838696615918!GO:0006904;vesicle docking during exocytosis;0.0256039717297436!GO:0005819;spindle;0.0260174768362713!GO:0004680;casein kinase activity;0.0261437004475064!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0261437004475064!GO:0033043;regulation of organelle organization and biogenesis;0.0261437004475064!GO:0006897;endocytosis;0.0261437004475064!GO:0010324;membrane invagination;0.0261437004475064!GO:0006376;mRNA splice site selection;0.0270504566988973!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0270504566988973!GO:0008033;tRNA processing;0.0271091968187651!GO:0008601;protein phosphatase type 2A regulator activity;0.0272840740016677!GO:0008022;protein C-terminus binding;0.0272971584003176!GO:0045926;negative regulation of growth;0.0286802965294223!GO:0006458;'de novo' protein folding;0.029037708471929!GO:0051084;'de novo' posttranslational protein folding;0.029037708471929!GO:0000082;G1/S transition of mitotic cell cycle;0.0292729435009467!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0294283529639182!GO:0050681;androgen receptor binding;0.0302515860212677!GO:0044452;nucleolar part;0.0303492532465285!GO:0051348;negative regulation of transferase activity;0.0305719373826433!GO:0030433;ER-associated protein catabolic process;0.0310861825008766!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0310861825008766!GO:0045334;clathrin-coated endocytic vesicle;0.0310861825008766!GO:0043256;laminin complex;0.0311136283520882!GO:0006497;protein amino acid lipidation;0.0311136283520882!GO:0005637;nuclear inner membrane;0.0317299070335509!GO:0000279;M phase;0.0323856267133651!GO:0051881;regulation of mitochondrial membrane potential;0.032391272987844!GO:0005938;cell cortex;0.032492092485346!GO:0040008;regulation of growth;0.0326741031533877!GO:0000287;magnesium ion binding;0.0328589720537621!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0330574092216227!GO:0022408;negative regulation of cell-cell adhesion;0.0331448610830425!GO:0006984;ER-nuclear signaling pathway;0.0334260570991307!GO:0032507;maintenance of cellular protein localization;0.0346511215802493!GO:0030100;regulation of endocytosis;0.0349496195642384!GO:0043624;cellular protein complex disassembly;0.0354308921402427!GO:0043241;protein complex disassembly;0.0354308921402427!GO:0031901;early endosome membrane;0.0356942191102015!GO:0003756;protein disulfide isomerase activity;0.0367275110539574!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0367275110539574!GO:0042158;lipoprotein biosynthetic process;0.0375481518104595!GO:0046519;sphingoid metabolic process;0.0382136591908426!GO:0006644;phospholipid metabolic process;0.0382909880336051!GO:0006506;GPI anchor biosynthetic process;0.0383187602922945!GO:0005801;cis-Golgi network;0.0385396737463912!GO:0051540;metal cluster binding;0.0387953302568485!GO:0051536;iron-sulfur cluster binding;0.0387953302568485!GO:0031272;regulation of pseudopodium formation;0.0390075542377378!GO:0031269;pseudopodium formation;0.0390075542377378!GO:0031344;regulation of cell projection organization and biogenesis;0.0390075542377378!GO:0031268;pseudopodium organization and biogenesis;0.0390075542377378!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0390075542377378!GO:0031274;positive regulation of pseudopodium formation;0.0390075542377378!GO:0009116;nucleoside metabolic process;0.039037223771436!GO:0008203;cholesterol metabolic process;0.0390548133022462!GO:0008426;protein kinase C inhibitor activity;0.0390904638376353!GO:0008629;induction of apoptosis by intracellular signals;0.0390943165147651!GO:0000339;RNA cap binding;0.0397515853083619!GO:0008538;proteasome activator activity;0.0400497045045024!GO:0031371;ubiquitin conjugating enzyme complex;0.0400497045045024!GO:0008097;5S rRNA binding;0.0400675317408941!GO:0043154;negative regulation of caspase activity;0.04010768137717!GO:0006144;purine base metabolic process;0.0401543782192867!GO:0006334;nucleosome assembly;0.0412731550749635!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0418836390488322!GO:0031323;regulation of cellular metabolic process;0.0419241474654314!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0434034351860114!GO:0015002;heme-copper terminal oxidase activity;0.0434034351860114!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0434034351860114!GO:0004129;cytochrome-c oxidase activity;0.0434034351860114!GO:0030139;endocytic vesicle;0.0442020487325961!GO:0048660;regulation of smooth muscle cell proliferation;0.0445130074853433!GO:0005784;translocon complex;0.0450415864618013!GO:0007040;lysosome organization and biogenesis;0.0451823254036295!GO:0031301;integral to organelle membrane;0.0453761376713483!GO:0006505;GPI anchor metabolic process;0.0456119746964954!GO:0007030;Golgi organization and biogenesis;0.0469842631383063!GO:0046983;protein dimerization activity;0.0475272380672028!GO:0030911;TPR domain binding;0.0482883912780345!GO:0030140;trans-Golgi network transport vesicle;0.0486727504060761!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0486727504060761!GO:0045859;regulation of protein kinase activity;0.0488956571934042!GO:0007032;endosome organization and biogenesis;0.0491989521268953!GO:0044262;cellular carbohydrate metabolic process;0.0491989521268953!GO:0016584;nucleosome positioning;0.0491989521268953!GO:0030838;positive regulation of actin filament polymerization;0.0491989521268953!GO:0016791;phosphoric monoester hydrolase activity;0.0491989521268953!GO:0004197;cysteine-type endopeptidase activity;0.0496211450764765!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0496324917895845
 +
|sample_id=11216
 +
|sample_note=machine failed, remainder reloaded, low amount
 +
|sample_sex=
 +
|sample_species=Human (Homo sapiens)
 +
|sample_strain=
 +
|sample_tissue=bladder
 +
|top_motifs=TP53:2.81937707214;ADNP_IRX_SIX_ZHX:2.3580117197;TEF:2.12233556548;TBX4,5:1.94588364075;VSX1,2:1.74065800268;ZEB1:1.65950451201;NKX2-2,8:1.26403675007;NKX2-3_NKX2-5:1.2198988579;NKX2-1,4:1.19387780026;SNAI1..3:1.14050299481;XCPE1{core}:1.08028195882;HAND1,2:1.07309822593;SP1:0.945485116632;TEAD1:0.913641959669;ZNF148:0.87260054252;TFCP2:0.861019849958;HSF1,2:0.837423694802;MYOD1:0.80689650004;SMAD1..7,9:0.757680152774;NKX3-2:0.755845059541;HMGA1,2:0.722340510304;EVI1:0.67515973153;MAZ:0.648038380883;ARID5B:0.628849677877;RBPJ:0.624073527824;PAX4:0.623037473474;HOX{A6,A7,B6,B7}:0.580836703106;IRF7:0.565940319907;FOXL1:0.52966190496;ONECUT1,2:0.503714004043;FOS_FOS{B,L1}_JUN{B,D}:0.500849777573;BACH2:0.497169424647;MTF1:0.485092873599;NANOG:0.450222632796;ZIC1..3:0.431068423081;HOX{A4,D4}:0.421043374957;CDC5L:0.40863460013;NR3C1:0.401074994263;ZNF238:0.397666420709;FOXM1:0.379764015871;FOSL2:0.364868195758;GLI1..3:0.364054387716;TFAP2{A,C}:0.356442388206;GZF1:0.355289313004;PAX1,9:0.345024594614;KLF4:0.340584983915;PPARG:0.337473512179;EN1,2:0.331874931223;TLX1..3_NFIC{dimer}:0.320865114936;ZNF423:0.318561529637;FOXO1,3,4:0.307885888915;SOX17:0.302649234392;STAT5{A,B}:0.296216958958;T:0.27281981645;PDX1:0.268850600077;HBP1_HMGB_SSRP1_UBTF:0.242845823314;UFEwm:0.232385369783;NR1H4:0.22714500153;LHX3,4:0.220491482388;PAX8:0.218102225716;POU1F1:0.211838701586;TLX2:0.198588322088;NFIX:0.179254644219;FOX{I1,J2}:0.166244113316;GTF2A1,2:0.158220305913;ZFP161:0.156746763066;FOXQ1:0.154179358854;FOXA2:0.143991929914;OCT4_SOX2{dimer}:0.130957108319;SOX2:0.130885350619;AIRE:0.129126453164;ALX4:0.11786301698;MYBL2:0.0713109121139;FOXN1:0.0504686132022;ZBTB6:0.0385271757371;CRX:0.0319114940022;TBP:0.0277098806773;GFI1B:0.0255867677799;SPZ1:0.0147353133472;AR:0.0139905427936;CDX1,2,4:0.00467655246788;LMO2:-0.0083344555024;MED-1{core}:-0.0202066033118;CEBPA,B_DDIT3:-0.0207605514648;EBF1:-0.0302542013625;POU6F1:-0.0305428156465;GATA6:-0.033089666126;HNF1A:-0.0503488845851;NFE2:-0.0529288019481;NKX3-1:-0.0743907848237;NR5A1,2:-0.074507694497;IKZF2:-0.0891333385864;NFKB1_REL_RELA:-0.0926251519256;TFDP1:-0.0977664265806;TOPORS:-0.114879385714;PAX5:-0.115920842607;HLF:-0.121228428879;NKX6-1,2:-0.155095187449;IRF1,2:-0.158790856305;bHLH_family:-0.161536752724;FOX{F1,F2,J1}:-0.165096209362;EGR1..3:-0.174126549642;HIF1A:-0.187587937741;GTF2I:-0.197087871549;ZBTB16:-0.214509784503;FOXD3:-0.220948259777;HIC1:-0.235805900316;ATF6:-0.240060706939;ETS1,2:-0.241219831392;PITX1..3:-0.249124929392;SRF:-0.250484520237;PAX6:-0.252644683226;HNF4A_NR2F1,2:-0.267847796321;RREB1:-0.268893923798;NFIL3:-0.275483048547;POU2F1..3:-0.280439660193;ELK1,4_GABP{A,B1}:-0.281663202358;TFAP2B:-0.289115595307;ESR1:-0.29429449086;RORA:-0.295945673885;ELF1,2,4:-0.306567499977;SPI1:-0.306793680174;LEF1_TCF7_TCF7L1,2:-0.306968255256;PRDM1:-0.319042028608;NFATC1..3:-0.320351621206;JUN:-0.322624601546;REST:-0.328177506555;NFE2L2:-0.333572707464;DBP:-0.37282412812;FOX{D1,D2}:-0.377492198536;ALX1:-0.383718202075;MTE{core}:-0.395697640204;POU3F1..4:-0.397043266213;ZNF143:-0.39986814872;SPIB:-0.411223445081;MEF2{A,B,C,D}:-0.425419627881;NRF1:-0.429383338219;NR6A1:-0.434545682106;HOX{A5,B5}:-0.436473045041;RXR{A,B,G}:-0.437627663024;ATF2:-0.443929554303;NHLH1,2:-0.454336290186;FOXP1:-0.462087122157;TFAP4:-0.471703936809;PATZ1:-0.474430172502;GCM1,2:-0.47573491863;RUNX1..3:-0.47907289356;MYB:-0.491622442847;HMX1:-0.510379393502;PBX1:-0.515011149046;FOXP3:-0.528153398793;ATF4:-0.556571163376;NFE2L1:-0.559856691477;BPTF:-0.571028169674;EP300:-0.571681847418;ATF5_CREB3:-0.596164937876;HOXA9_MEIS1:-0.615532006539;NFY{A,B,C}:-0.623506752255;PAX2:-0.652006031891;RFX2..5_RFXANK_RFXAP:-0.657304423879;E2F1..5:-0.669619560494;CREB1:-0.675578279683;GFI1:-0.677525976297;STAT1,3:-0.694999866479;RFX1:-0.702493961274;STAT2,4,6:-0.703510383662;IKZF1:-0.706254137358;PRRX1,2:-0.713177801095;GATA4:-0.72081459558;CUX2:-0.723323934504;TGIF1:-0.726084506523;SREBF1,2:-0.732946616177;SOX{8,9,10}:-0.750271289052;MZF1:-0.810384258448;MYFfamily:-0.823823137191;ZNF384:-0.825858861053;MAFB:-0.830087768042;SOX5:-0.844709367931;AHR_ARNT_ARNT2:-0.845939192788;YY1:-0.87779003769;DMAP1_NCOR{1,2}_SMARC:-0.910155665892;RXRA_VDR{dimer}:-0.911997389507;XBP1:-0.929283671191;POU5F1:-0.955043361144;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.01848681242;ESRRA:-1.06332895262;PAX3,7:-1.12081987163;BREu{core}:-1.12817257942;HES1:-1.27583436109;TAL1_TCF{3,4,12}:-1.29034718839;NANOG{mouse}:-1.31841883171;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.51791780202
 +
|xref=
 
}}
 
}}

Latest revision as of 06:10, 17 October 2017

Name:Urothelial cells, donor0
Species:Human (Homo sapiens)
Library ID:CNhs10843
Sample type:primary cells
Genomic View: UCSC
MicroRNAs:Including candidate novel miRNAs(CAGE samplessRNA samples)
Excluding candidate novel miRNAs(CAGE samplessRNA samples)
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissuebladder
dev stageNA
sexNA
ageNA
cell typeurothelial cell
cell lineNA
companySciencell
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog number4325
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

Accession numbers
MethodSample accession id
CAGE  SAMD00005200
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10843 CAGE DRX008528 DRR009400
Accession ID Hg19

Library idBAMCTSS
CNhs10843 DRZ000825 DRZ002210
Accession ID Hg38

Library idBAMCTSS
CNhs10843 DRZ012175 DRZ013560
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005200
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10009.GGCTAC sRNA-Seq DRX037135 DRR041501
Accession ID Hg19

Library idBAMCTSS
SRhi10009.GGCTAC DRZ007143


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis--0.0791
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma--0.138
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.625
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.416
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19--0.0627
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle--0.13
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0.0898
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed--0.219
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.164
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte--0.178
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal1.059
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus--0.663
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8--0.0574
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.988
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small--0.269
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.474
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.453
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.228
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs10843

Jaspar motif P-value
MA0002.2 0.317
MA0003.1 0.951
MA0004.1 0.126
MA0006.1 0.02
MA0007.1 0.959
MA0009.1 0.207
MA0014.1 0.184
MA0017.1 0.498
MA0018.2 0.00202
MA0019.1 0.499
MA0024.1 6.16908e-4
MA0025.1 0.113
MA0027.1 0.688
MA0028.1 0.0676
MA0029.1 0.156
MA0030.1 0.407
MA0031.1 0.85
MA0035.2 0.901
MA0038.1 0.562
MA0039.2 0.00302
MA0040.1 0.388
MA0041.1 0.675
MA0042.1 0.549
MA0043.1 0.00236
MA0046.1 0.45
MA0047.2 0.13
MA0048.1 0.724
MA0050.1 0.106
MA0051.1 0.307
MA0052.1 0.014
MA0055.1 0.0139
MA0057.1 0.0702
MA0058.1 0.0154
MA0059.1 0.322
MA0060.1 0.00615
MA0061.1 0.656
MA0062.2 1.81499e-4
MA0065.2 0.26
MA0066.1 0.116
MA0067.1 0.0173
MA0068.1 0.0247
MA0069.1 0.492
MA0070.1 0.77
MA0071.1 0.541
MA0072.1 0.892
MA0073.1 0.527
MA0074.1 0.613
MA0076.1 0.0101
MA0077.1 0.276
MA0078.1 0.555
MA0079.2 0.615
MA0080.2 0.00161
MA0081.1 0.00605
MA0083.1 0.96
MA0084.1 0.107
MA0087.1 0.782
MA0088.1 0.293
MA0090.1 5.25117e-5
MA0091.1 0.541
MA0092.1 0.569
MA0093.1 0.0708
MA0099.2 1.41735e-10
MA0100.1 0.269
MA0101.1 0.675
MA0102.2 0.102
MA0103.1 3.10592e-6
MA0104.2 0.0201
MA0105.1 0.472
MA0106.1 1.57338e-10
MA0107.1 0.955
MA0108.2 0.107
MA0111.1 0.755
MA0112.2 0.124
MA0113.1 0.88
MA0114.1 0.263
MA0115.1 0.674
MA0116.1 0.674
MA0117.1 0.487
MA0119.1 0.043
MA0122.1 0.991
MA0124.1 0.886
MA0125.1 0.0143
MA0131.1 0.393
MA0135.1 0.262
MA0136.1 0.0293
MA0137.2 0.0384
MA0138.2 0.208
MA0139.1 0.383
MA0140.1 0.658
MA0141.1 0.401
MA0142.1 0.347
MA0143.1 0.171
MA0144.1 0.78
MA0145.1 0.0286
MA0146.1 0.559
MA0147.1 0.0464
MA0148.1 0.0806
MA0149.1 0.0403
MA0150.1 0.416
MA0152.1 0.263
MA0153.1 0.63
MA0154.1 0.135
MA0155.1 0.681
MA0156.1 0.131
MA0157.1 0.451
MA0159.1 0.595
MA0160.1 0.698
MA0162.1 0.168
MA0163.1 0.842
MA0164.1 0.978
MA0258.1 0.811
MA0259.1 0.104



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs10843

Novel motif P-value
1 0.859
10 0.382
100 0.563
101 0.481
102 0.382
103 0.0634
104 0.721
105 0.46
106 0.0323
107 0.00757
108 0.176
109 0.0662
11 0.471
110 0.464
111 0.0255
112 0.592
113 0.0146
114 0.135
115 0.341
116 0.756
117 0.506
118 0.592
119 0.107
12 0.405
120 0.00942
121 0.587
122 0.971
123 0.64
124 0.131
125 0.334
126 0.47
127 0.168
128 0.0839
129 0.0621
13 0.672
130 0.247
131 0.715
132 0.168
133 0.0548
134 0.112
135 0.559
136 0.64
137 0.265
138 0.818
139 0.951
14 0.828
140 0.419
141 0.714
142 0.638
143 0.978
144 0.646
145 0.0972
146 0.122
147 0.265
148 0.139
149 0.555
15 0.6
150 0.129
151 0.276
152 0.0126
153 0.818
154 0.646
155 0.613
156 0.589
157 0.721
158 0.663
159 0.894
16 0.179
160 0.702
161 0.976
162 0.894
163 0.717
164 0.764
165 0.662
166 0.688
167 0.223
168 0.146
169 0.0976
17 0.0636
18 0.31
19 0.881
2 0.223
20 0.792
21 0.552
22 0.545
23 0.0131
24 0.0809
25 0.68
26 0.545
27 0.529
28 0.389
29 0.456
3 0.252
30 0.154
31 0.476
32 0.239
33 0.399
34 0.901
35 0.175
36 0.854
37 0.495
38 0.218
39 0.264
4 0.74
40 0.124
41 0.871
42 0.46
43 0.37
44 0.26
45 0.0948
46 0.511
47 0.594
48 0.26
49 0.587
5 0.641
50 0.332
51 0.429
52 0.184
53 0.657
54 0.419
55 0.321
56 0.219
57 0.521
58 0.823
59 0.249
6 0.229
60 0.255
61 0.953
62 0.981
63 0.124
64 0.937
65 0.212
66 0.504
67 0.513
68 0.265
69 0.26
7 0.71
70 0.00937
71 0.582
72 0.896
73 0.0202
74 0.171
75 0.181
76 0.671
77 0.046
78 0.0291
79 0.874
8 0.543
80 0.781
81 0.91
82 0.604
83 0.657
84 0.562
85 0.33
86 0.475
87 0.73
88 0.578
89 0.0306
9 0.846
90 0.683
91 0.472
92 0.228
93 0.958
94 0.522
95 0.336
96 0.956
97 0.921
98 0.826
99 0.286



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs10843


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000244 (transitional epithelial cell)
0000731 (urothelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000483 (epithelium)
0005910 (transitional epithelium)
0000479 (tissue)
0004119 (endoderm-derived structure)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0005911 (endo-epithelium)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000486 (multilaminar epithelium)
0010317 (germ layer / neural crest derived structure)
0000365 (urothelium)
0001008 (renal system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000191 (human urothelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

NA