Personal tools

FF:11217-116B2: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(27 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000479,UBERON:0001013,UBERON:0001062,UBERON:0002384
|DRA_sample_Accession=CAGE@SAMD00004820
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371,CL:0002570
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004820
|accession_numbers=CAGE;DRX008360;DRR009232;DRZ000657;DRZ002042;DRZ012007;DRZ013392
|accession_numbers_RNASeq=sRNA-Seq;DRX037186;DRR041552;DRZ007194
|ancestors_in_anatomy_facet=UBERON:0001013,UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002570
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000096
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|
|expression_enrichment_score=
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 35: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520stem%2520cells%2520-%2520adipose%252c%2520donor0.CNhs10844.11217-116B2.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520stem%2520cells%2520-%2520adipose%252c%2520donor0.CNhs10844.11217-116B2.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520stem%2520cells%2520-%2520adipose%252c%2520donor0.CNhs10844.11217-116B2.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520stem%2520cells%2520-%2520adipose%252c%2520donor0.CNhs10844.11217-116B2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520stem%2520cells%2520-%2520adipose%252c%2520donor0.CNhs10844.11217-116B2.hg38.nobarcode.ctss.bed.gz
|id=FF:11217-116B2
|id=FF:11217-116B2
|is_a=EFO:0002091;;FF:0000002;;FF:0000096;;FF:0000210
|is_a=EFO:0002091;;FF:0000096
|is_obsolete=
|library_id=CNhs10844
|library_id_phase_based=2:CNhs10844
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11217
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10012.GCCAAT.11217
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11217
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10012.GCCAAT.11217
|name=Mesenchymal stem cells - adipose, donor0
|name=Mesenchymal stem cells - adipose, donor0
|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs10844,LSID700,release009,COMPLETED
|profile_hcage=CNhs10844,LSID700,release009,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10012,,,
|profile_srnaseq=SRhi10012,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0378609201236254,0,-0.129011236187274,-0.221175005595561,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0308659003856669,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.0245725468955068,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0,-0.0969923612426051,0,0,0.0251134827496638,0,0,0,0,0,0,0,0,0.122457109962761,0,0,0,0,0,0,0,0,0,0.0612285549813805,0,0,0,0,0,-0.0229137509462299,0,0,0,-0.123982301439133,-0.03005564444496,0,0,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,-0.00130514300338147,0.0126860512373241,0,0,0,0,0,0
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0.122457109962761,0,0,0,0,0,0,-0.124721765322804,0,0.0418079211395266,-0.143515142523472,0,0,0.263143818787304,0,0.296052480435855,0,0,0,0,0,0,0,0.342351942216731,0,0.369325321525261,0,0,0,0,-0.00536848316442685,-0.0876009191563986,0,0.00688369710139895,-0.0683442610773682,0,0,0,0,0.135981066889267,0,0.00157762616902009,-0.0827201683234173,0,-0.240587753516432,-0.055712496781182,0,0,0,0.0591084581164441,-0.142465897053604,0,0,0.0262463884660537,-0.120121063579279,0,0,0.327836463129637,0,-0.156273345564391,0.090077896937483,0,0,0,0,0,0,0,0,0,0,0,0,0,0.090532773396491,-0.10911728493696,-0.0304099808375785,0,0,0,-0.396391128537534,0,0,0.684515231189544,0.151382948009681,-0.0390670885367542,-0.367182769801069,0,-0.00633724657405804,-0.0421156152421669,-0.0541768649905921,-0.248932745307813,-0.0249447394083778,0.0278895921921614,0,-0.0229137509462299,-0.191700468408839,-0.0348800955572008,0.0976598493364378,-0.0272781414194047,-0.0103769090383159,-0.256603254261438,0,0,0,-0.249249647345894,0,0.00939916368760163,-0.127831197974956,-0.0478651147882002,-0.286075729928431,-0.214722822221902,-0.004503953159954,0.332275483584063,0.0829245815060903,-0.0376985797820191,0,0.245205836738822,-0.018722137234405,0.122457109962761,-0.090104171961993,-0.0420118584407915,-0.315440297938027,0.129272564874656,0,-0.36152035184822,-0.0683442610773682,0.0071097654461332,-0.0441880138328475,-0.0209725048758682,0,0,-0.159039357756836,0,0,0.15836670292332,0,0,0.0490537112243252,-0.321620831288158,-0.232855561555545,0,-0.239136874049327,-0.0480503062940476,0,0,-0.125063628716854,0.172496597930682,0,-0.245786346274739,0,0.0707685753808538,-0.0355027225411524,0.052880615403006,-0.06011128888992,-0.0584468268118252,-0.135899773070558,-0.28864277863575,-0.123982301439133,0.304508663504323,-0.0578816212502485,0.129744479266721,-0.0702281529650628,0.161692993059758,-0.259760258506949,-0.00695956225859451,0.0544168235339297,0,-0.266929133523091,0,0.0643830097211215,0,-0.285393969961698,0.0887068119556467,-0.221418062838677,0.13519636291215,0,-0.0747662649974934,-0.231118526928243,0,0,-0.0228103351982703,0,0.365527056556896,-0.227224157343287,-0.102714771993585,0.0311747541731899,0,0.12193964388713,0,0,0.170926825822121,-0.235476037764389,0,0.190469830536325,-0.189465041098821,0.0249245222335922,0.180081407000921,0,0,-0.0886879271469941,0,0.122457109962761,-0.0900339239264953,-0.0318015692682463,-0.257499807456816,0.437652023219391,0,0.101246127103032,0,0,-0.177527765965176,0,0.0139052131510198,0,0,0.080698276604657,0.101243198751876,0,0,0,0,0,0,0,0,0,0,0,-0.415648991291384,0.202179080629283,0,0.182801858120027,0,0.122457109962761,0,0,0,0,-0.0636743720556091,0.122457109962761,0.375486634440366,-0.0968332978427447,0.0948538960655885,0,0,0,0,0.00214790918853408,0.014634749647285,0,0.086008605244377,0,0.0612285549813805,0,0,0.0363161201735494,0,0,0,0,-0.057730457053664,-0.165188615681735,0,0,0,-0.27695440160179,0,0,0,0,-0.0162042275253251,0,0,0,0,-0.130087419646803,-0.0815818795468414,0,-0.0248380097150606,0.00385491160981966,-0.433707324309178,0,0,-0.0434758200478788,0,0,0.149665595690823,0.0407921397488034,0,0,0,0,0,0,0.122457109962761,0,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0,-0.242880651722143,0.0302330533042503,0.0583974394456526,0,0,0,0,0,0,0.0371225319024774,-0.0842184871403936,0,0,0,0,0,0.122457109962761,0,0,-0.109142423161425,0,0,0.122457109962761,0,0,-0.0969923612426051,0,0,0,0,-0.442350011191123,0,0,0.0849213843083034,0,0,0,0,0,0,0,0,0,0,0,0,0,0.172733394400407,-0.129011236187274,0,0,0,0,0,0,0,-0.27483329820609,0,0,0,0,0.103986938033032,0,0,0,0.113074926952852,0,-0.0378609201236254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464825332825769,0,0.282444777681098,-0.00347716441384192,0,0,-0.084602112415114,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0348580438050884,0,0,0,0,0.122457109962761,0,0,-0.0979578962680575,0,0,-0.0308042548191458,0,0,0,0,0,0,0.0994650206371604,0.294529354729039,-0.0439712096109968,0,0,0,0.0936406677354725,0,0,0,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0308659003856669,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11046527294114,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.550504042515712,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0.296052480435855,-0.0261999428204728,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,0.057770357972869,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,1.13683819708121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0181643434809372,0.0126860512373241,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271097491538669,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.144855139550111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0296969223726757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.149924609580309,0,0,0,0,0,0,0,0,0.217871311742009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.192747187844922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148026240217928,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0483007584155027,0,0,0,0,0,0,0,-0.122695996997001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0374887714638185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0317165860483832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0612285549813805,0,0,0,-0.0797419986649781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0251134827496638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0612285549813805,0,0,0,0.058997673349418,0,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131170037792131,0,0,-0.0422874684771159,0,0,0,0,0,0,0,0,0.106431000849607,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152738911698019,0,0,0,0,0,0,0.217871311742009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.157614985360205,0,-0.0709531495740764,-0.397074688522015,0,0,-0.09167652091247,0,0,-0.0477396614475454,0,0,-0.0525357851275383,-0.343634023509992,0,0,0,0,0,0,0,0,0,0.122457109962761,0,0,0,0,0.0488706429973951,0.122457109962761,0,0,0.0655981638001616,0.150262237520007,0,-0.0165527378486066,0,0,-0.522495523527971,0,0,0,-0.0959594073735869
|rna_box=116
|rna_box=116
|rna_catalog_number=7515
|rna_catalog_number=7515
Line 56: Line 82:
|rna_tube_id=116B2
|rna_tube_id=116B2
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10012.GCCAAT
|sample_age=
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 69: Line 97:
|sample_ethnicity=
|sample_ethnicity=
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.34613065816594e-241!GO:0005737;cytoplasm;3.55920035073068e-193!GO:0043231;intracellular membrane-bound organelle;8.16746962410196e-192!GO:0043227;membrane-bound organelle;1.83296157968948e-191!GO:0043226;organelle;4.25259855884588e-190!GO:0043229;intracellular organelle;8.73533545262027e-190!GO:0044422;organelle part;1.60781858802259e-159!GO:0044446;intracellular organelle part;4.08472238772157e-158!GO:0044444;cytoplasmic part;1.44902755768146e-144!GO:0032991;macromolecular complex;1.81693424533675e-113!GO:0030529;ribonucleoprotein complex;1.85216425867937e-100!GO:0044237;cellular metabolic process;1.43691867149143e-86!GO:0044238;primary metabolic process;1.80097301214853e-85!GO:0005739;mitochondrion;3.44795809935263e-81!GO:0043233;organelle lumen;9.10246687671863e-81!GO:0031974;membrane-enclosed lumen;9.10246687671863e-81!GO:0043170;macromolecule metabolic process;5.60578589353842e-78!GO:0044428;nuclear part;5.98890210866671e-78!GO:0005515;protein binding;8.20312730880795e-75!GO:0003723;RNA binding;4.59818559334783e-74!GO:0005634;nucleus;5.06066084898289e-70!GO:0005840;ribosome;9.88776010138549e-61!GO:0006396;RNA processing;2.69087603730641e-58!GO:0043234;protein complex;5.8980346500644e-56!GO:0006412;translation;5.1468191560889e-55!GO:0031090;organelle membrane;9.39428640660414e-55!GO:0044429;mitochondrial part;9.01875292006002e-54!GO:0003735;structural constituent of ribosome;3.39241562872848e-52!GO:0019538;protein metabolic process;3.47759197252601e-51!GO:0016043;cellular component organization and biogenesis;6.00432476932683e-49!GO:0031967;organelle envelope;2.68267828767106e-47!GO:0009058;biosynthetic process;4.05952036932775e-47!GO:0031975;envelope;5.02711809505167e-47!GO:0031981;nuclear lumen;2.73457015340308e-45!GO:0033279;ribosomal subunit;4.31780460836343e-45!GO:0044260;cellular macromolecule metabolic process;4.68596425375788e-45!GO:0044267;cellular protein metabolic process;1.03839166434874e-44!GO:0044249;cellular biosynthetic process;1.6635852666621e-44!GO:0015031;protein transport;2.22756893923529e-44!GO:0033036;macromolecule localization;2.90646755362405e-43!GO:0009059;macromolecule biosynthetic process;4.24568416060013e-43!GO:0005829;cytosol;5.06790196413527e-43!GO:0045184;establishment of protein localization;3.47463810129837e-41!GO:0008104;protein localization;4.46639296948758e-40!GO:0016071;mRNA metabolic process;1.88422538759323e-39!GO:0043283;biopolymer metabolic process;3.44099206495946e-39!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.85791416921557e-39!GO:0008380;RNA splicing;9.02443070024608e-38!GO:0043228;non-membrane-bound organelle;2.85725236491251e-37!GO:0043232;intracellular non-membrane-bound organelle;2.85725236491251e-37!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.63065466358281e-36!GO:0046907;intracellular transport;5.76657312075475e-36!GO:0006397;mRNA processing;2.95034913171063e-35!GO:0010467;gene expression;9.41737561219853e-35!GO:0065003;macromolecular complex assembly;1.58127165564375e-34!GO:0005740;mitochondrial envelope;2.446908830226e-34!GO:0006996;organelle organization and biogenesis;4.90546073993276e-34!GO:0031966;mitochondrial membrane;6.24528792410573e-32!GO:0006259;DNA metabolic process;6.33793954586803e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.13101502023845e-31!GO:0022607;cellular component assembly;9.26616432628215e-31!GO:0006886;intracellular protein transport;1.64887880115821e-30!GO:0019866;organelle inner membrane;5.58516180736025e-30!GO:0005743;mitochondrial inner membrane;3.80693653168775e-28!GO:0007049;cell cycle;1.24083542042135e-27!GO:0005681;spliceosome;1.50371466082819e-27!GO:0005654;nucleoplasm;1.49928670591192e-25!GO:0044445;cytosolic part;1.1980909740984e-24!GO:0000278;mitotic cell cycle;7.3881775834217e-24!GO:0015934;large ribosomal subunit;1.02515761316856e-23!GO:0031980;mitochondrial lumen;2.3601953212077e-23!GO:0005759;mitochondrial matrix;2.3601953212077e-23!GO:0016462;pyrophosphatase activity;3.16554123424299e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.65207599326855e-23!GO:0006119;oxidative phosphorylation;4.79105642753588e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;5.97745482007871e-23!GO:0051649;establishment of cellular localization;8.83216450375344e-23!GO:0051641;cellular localization;1.04977134088741e-22!GO:0000166;nucleotide binding;1.08634117215545e-22!GO:0012505;endomembrane system;1.15000631308395e-22!GO:0015935;small ribosomal subunit;1.92786849763228e-22!GO:0005730;nucleolus;3.05388428903534e-22!GO:0006457;protein folding;3.56413943210533e-22!GO:0022402;cell cycle process;3.62184478274988e-22!GO:0044455;mitochondrial membrane part;4.74436040433746e-22!GO:0017111;nucleoside-triphosphatase activity;5.69283261746469e-22!GO:0042254;ribosome biogenesis and assembly;5.32625836478961e-21!GO:0005783;endoplasmic reticulum;2.68985919313239e-20!GO:0006974;response to DNA damage stimulus;3.84173003885349e-20!GO:0044451;nucleoplasm part;5.35161530121055e-20!GO:0022618;protein-RNA complex assembly;3.55662990597086e-19!GO:0000087;M phase of mitotic cell cycle;7.71252741265304e-19!GO:0007067;mitosis;1.42795710071838e-18!GO:0005746;mitochondrial respiratory chain;1.47032430742959e-18!GO:0005761;mitochondrial ribosome;1.51588338535587e-18!GO:0000313;organellar ribosome;1.51588338535587e-18!GO:0000502;proteasome complex (sensu Eukaryota);2.10281447942602e-18!GO:0005694;chromosome;2.25159714825735e-18!GO:0003676;nucleic acid binding;3.35327501735076e-18!GO:0051186;cofactor metabolic process;3.68931716461021e-18!GO:0044432;endoplasmic reticulum part;3.8700984431511e-18!GO:0022403;cell cycle phase;5.70655627316391e-18!GO:0048770;pigment granule;9.16894415761686e-18!GO:0042470;melanosome;9.16894415761686e-18!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.45686939816849e-17!GO:0006281;DNA repair;6.13944112929526e-17!GO:0044427;chromosomal part;6.77950268816998e-17!GO:0043285;biopolymer catabolic process;1.12459527771396e-16!GO:0017076;purine nucleotide binding;1.93367268444702e-16!GO:0044265;cellular macromolecule catabolic process;2.18290240624149e-16!GO:0008135;translation factor activity, nucleic acid binding;2.82976665283916e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.24065091340644e-16!GO:0016874;ligase activity;4.03588550961368e-16!GO:0032553;ribonucleotide binding;4.08784652706514e-16!GO:0032555;purine ribonucleotide binding;4.08784652706514e-16!GO:0009057;macromolecule catabolic process;7.14576051188011e-16!GO:0051301;cell division;7.88186415019073e-16!GO:0050136;NADH dehydrogenase (quinone) activity;7.96677636584487e-16!GO:0003954;NADH dehydrogenase activity;7.96677636584487e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.96677636584487e-16!GO:0006260;DNA replication;1.63410225080481e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.30515204974321e-15!GO:0009719;response to endogenous stimulus;3.31769220091579e-15!GO:0006605;protein targeting;3.44386155418195e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;4.36103385191087e-15!GO:0044248;cellular catabolic process;5.18743840187766e-15!GO:0000279;M phase;5.74585369623678e-15!GO:0051082;unfolded protein binding;6.23007103753367e-15!GO:0019941;modification-dependent protein catabolic process;7.02067067933999e-15!GO:0043632;modification-dependent macromolecule catabolic process;7.02067067933999e-15!GO:0005794;Golgi apparatus;7.87246713249713e-15!GO:0006512;ubiquitin cycle;8.70329690637773e-15!GO:0006511;ubiquitin-dependent protein catabolic process;9.18027554503461e-15!GO:0044257;cellular protein catabolic process;9.68351153507639e-15!GO:0030163;protein catabolic process;1.44990137710693e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.76878743359865e-14!GO:0006364;rRNA processing;2.00070932440134e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;3.37206924507426e-14!GO:0000375;RNA splicing, via transesterification reactions;3.37206924507426e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.37206924507426e-14!GO:0042775;organelle ATP synthesis coupled electron transport;3.67741973783724e-14!GO:0042773;ATP synthesis coupled electron transport;3.67741973783724e-14!GO:0006732;coenzyme metabolic process;3.85623266844939e-14!GO:0030964;NADH dehydrogenase complex (quinone);5.70467931703971e-14!GO:0045271;respiratory chain complex I;5.70467931703971e-14!GO:0005747;mitochondrial respiratory chain complex I;5.70467931703971e-14!GO:0016072;rRNA metabolic process;5.7168249371561e-14!GO:0048193;Golgi vesicle transport;1.02589123454952e-13!GO:0005635;nuclear envelope;1.03711537800363e-13!GO:0006399;tRNA metabolic process;1.2444763698344e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.64487870341832e-13!GO:0044453;nuclear membrane part;4.82994217188861e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.55328756834934e-13!GO:0003743;translation initiation factor activity;8.03464545833223e-13!GO:0005524;ATP binding;8.53281762490775e-13!GO:0008134;transcription factor binding;8.62210628484714e-13!GO:0030554;adenyl nucleotide binding;1.11208487470916e-12!GO:0031965;nuclear membrane;1.16541626087028e-12!GO:0032559;adenyl ribonucleotide binding;1.66872468674754e-12!GO:0005789;endoplasmic reticulum membrane;2.55924179853299e-12!GO:0006413;translational initiation;2.76849952257311e-12!GO:0016070;RNA metabolic process;3.35097365138502e-12!GO:0005793;ER-Golgi intermediate compartment;3.4540185527346e-12!GO:0009259;ribonucleotide metabolic process;4.1501222504894e-12!GO:0016887;ATPase activity;5.18690891549895e-12!GO:0000074;regulation of progression through cell cycle;5.49670699715622e-12!GO:0042623;ATPase activity, coupled;5.50926778527035e-12!GO:0051276;chromosome organization and biogenesis;5.9800924367291e-12!GO:0051726;regulation of cell cycle;7.55897186248235e-12!GO:0006163;purine nucleotide metabolic process;1.49908377418486e-11!GO:0009055;electron carrier activity;3.85443037791478e-11!GO:0016192;vesicle-mediated transport;4.61349339055543e-11!GO:0006446;regulation of translational initiation;6.92390107568077e-11!GO:0009150;purine ribonucleotide metabolic process;8.87274711080458e-11!GO:0005643;nuclear pore;8.87274711080458e-11!GO:0043412;biopolymer modification;1.17213954953129e-10!GO:0009260;ribonucleotide biosynthetic process;1.18323653352577e-10!GO:0065002;intracellular protein transport across a membrane;1.47000369921514e-10!GO:0006164;purine nucleotide biosynthetic process;1.4811035157056e-10!GO:0065004;protein-DNA complex assembly;1.94454179482794e-10!GO:0016604;nuclear body;2.43520264761122e-10!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.04536431111618e-10!GO:0006913;nucleocytoplasmic transport;3.94231291976835e-10!GO:0012501;programmed cell death;6.36368967107344e-10!GO:0008565;protein transporter activity;8.55535479515965e-10!GO:0009152;purine ribonucleotide biosynthetic process;8.56856340541433e-10!GO:0004386;helicase activity;9.84228232166007e-10!GO:0051169;nuclear transport;9.91776185569704e-10!GO:0009141;nucleoside triphosphate metabolic process;1.06560467955794e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.08981205020628e-09!GO:0006915;apoptosis;1.15864245897747e-09!GO:0009060;aerobic respiration;1.65894783052826e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.28681861524541e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.57291871908303e-09!GO:0009144;purine nucleoside triphosphate metabolic process;2.57291871908303e-09!GO:0008026;ATP-dependent helicase activity;2.74818583310272e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;3.21116611601233e-09!GO:0006461;protein complex assembly;3.24053320111721e-09!GO:0046930;pore complex;3.43792436116477e-09!GO:0006333;chromatin assembly or disassembly;3.59850696992062e-09!GO:0000785;chromatin;3.65886253543668e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.73172176847173e-09!GO:0016491;oxidoreductase activity;5.06432481380903e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.22129120481445e-09!GO:0004812;aminoacyl-tRNA ligase activity;5.22129120481445e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.22129120481445e-09!GO:0006464;protein modification process;5.3107884802662e-09!GO:0009056;catabolic process;6.50717592413458e-09!GO:0016779;nucleotidyltransferase activity;6.60002099525499e-09!GO:0030532;small nuclear ribonucleoprotein complex;6.60158189890008e-09!GO:0008219;cell death;7.01703865205945e-09!GO:0016265;death;7.01703865205945e-09!GO:0045333;cellular respiration;7.01778134123488e-09!GO:0043038;amino acid activation;8.22167989199405e-09!GO:0006418;tRNA aminoacylation for protein translation;8.22167989199405e-09!GO:0043039;tRNA aminoacylation;8.22167989199405e-09!GO:0050657;nucleic acid transport;8.23683261901185e-09!GO:0051236;establishment of RNA localization;8.23683261901185e-09!GO:0050658;RNA transport;8.23683261901185e-09!GO:0006323;DNA packaging;8.32138161184354e-09!GO:0009117;nucleotide metabolic process;8.86348763774186e-09!GO:0006403;RNA localization;8.98924105281187e-09!GO:0051188;cofactor biosynthetic process;9.53541709348035e-09!GO:0006334;nucleosome assembly;1.00040735637673e-08!GO:0005788;endoplasmic reticulum lumen;1.01123179905076e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.08994795252671e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.18661421983301e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.18661421983301e-08!GO:0003697;single-stranded DNA binding;1.23624037204305e-08!GO:0043566;structure-specific DNA binding;1.6774792245897e-08!GO:0017038;protein import;2.02116061430112e-08!GO:0007005;mitochondrion organization and biogenesis;2.62734207148113e-08!GO:0015986;ATP synthesis coupled proton transport;2.80726037405803e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.80726037405803e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.82325260458202e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.82325260458202e-08!GO:0003712;transcription cofactor activity;2.85483316800535e-08!GO:0016853;isomerase activity;3.06885568727009e-08!GO:0016607;nuclear speck;3.79820278967917e-08!GO:0046034;ATP metabolic process;4.00807118547394e-08!GO:0008639;small protein conjugating enzyme activity;4.05543493704672e-08!GO:0015630;microtubule cytoskeleton;5.32454761392389e-08!GO:0031497;chromatin assembly;5.80472600615324e-08!GO:0006099;tricarboxylic acid cycle;6.10432098568536e-08!GO:0046356;acetyl-CoA catabolic process;6.10432098568536e-08!GO:0051187;cofactor catabolic process;7.0088249476535e-08!GO:0048523;negative regulation of cellular process;8.63524594162925e-08!GO:0004842;ubiquitin-protein ligase activity;9.11047127146302e-08!GO:0005839;proteasome core complex (sensu Eukaryota);1.16825856089374e-07!GO:0000775;chromosome, pericentric region;1.24509115861929e-07!GO:0003924;GTPase activity;1.30333825239112e-07!GO:0019829;cation-transporting ATPase activity;1.30392628339964e-07!GO:0051246;regulation of protein metabolic process;1.48915121594228e-07!GO:0019787;small conjugating protein ligase activity;1.525840805805e-07!GO:0006084;acetyl-CoA metabolic process;1.70203402504659e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.74243342150701e-07!GO:0009109;coenzyme catabolic process;1.74243342150701e-07!GO:0016787;hydrolase activity;1.97196273580355e-07!GO:0005819;spindle;1.98046616805715e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.16837884919078e-07!GO:0006261;DNA-dependent DNA replication;2.38851743835224e-07!GO:0043687;post-translational protein modification;2.65067677627167e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.92804378181921e-07!GO:0044431;Golgi apparatus part;3.17083494754977e-07!GO:0015078;hydrogen ion transmembrane transporter activity;3.23356928214171e-07!GO:0051028;mRNA transport;4.01253365509562e-07!GO:0006754;ATP biosynthetic process;4.30398384308929e-07!GO:0006753;nucleoside phosphate metabolic process;4.30398384308929e-07!GO:0051329;interphase of mitotic cell cycle;4.41426745520478e-07!GO:0003899;DNA-directed RNA polymerase activity;4.85552562345257e-07!GO:0009108;coenzyme biosynthetic process;6.11824664893629e-07!GO:0030120;vesicle coat;6.14071973446612e-07!GO:0030662;coated vesicle membrane;6.14071973446612e-07!GO:0016740;transferase activity;6.17881313031629e-07!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;7.14241094135546e-07!GO:0006366;transcription from RNA polymerase II promoter;7.58369892950713e-07!GO:0005762;mitochondrial large ribosomal subunit;7.90671420682096e-07!GO:0000315;organellar large ribosomal subunit;7.90671420682096e-07!GO:0004298;threonine endopeptidase activity;8.09725442594923e-07!GO:0016859;cis-trans isomerase activity;9.05519677603514e-07!GO:0005525;GTP binding;9.77675752347142e-07!GO:0005813;centrosome;9.88049445311165e-07!GO:0051325;interphase;1.27514438919393e-06!GO:0016881;acid-amino acid ligase activity;1.34577317096314e-06!GO:0005768;endosome;1.3730412238891e-06!GO:0005815;microtubule organizing center;2.11433731540136e-06!GO:0045259;proton-transporting ATP synthase complex;2.30259777173666e-06!GO:0048519;negative regulation of biological process;2.48524656619148e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.71354910442354e-06!GO:0008654;phospholipid biosynthetic process;2.78789274085912e-06!GO:0000245;spliceosome assembly;3.0011414079698e-06!GO:0048475;coated membrane;3.33128051522618e-06!GO:0030117;membrane coat;3.33128051522618e-06!GO:0006091;generation of precursor metabolites and energy;3.88848271487976e-06!GO:0006613;cotranslational protein targeting to membrane;3.92833680793518e-06!GO:0008033;tRNA processing;4.4002291546092e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.46214303463076e-06!GO:0007051;spindle organization and biogenesis;4.46883522464442e-06!GO:0005667;transcription factor complex;5.73031538758426e-06!GO:0000314;organellar small ribosomal subunit;6.05495564565231e-06!GO:0005763;mitochondrial small ribosomal subunit;6.05495564565231e-06!GO:0000139;Golgi membrane;6.22972007992896e-06!GO:0006752;group transfer coenzyme metabolic process;6.47157841030624e-06!GO:0031252;leading edge;1.04100920917702e-05!GO:0043069;negative regulation of programmed cell death;1.11904234275228e-05!GO:0006950;response to stress;1.23332797693007e-05!GO:0000075;cell cycle checkpoint;1.23414575591702e-05!GO:0031968;organelle outer membrane;1.28483595764316e-05!GO:0044440;endosomal part;1.299691844612e-05!GO:0010008;endosome membrane;1.299691844612e-05!GO:0042981;regulation of apoptosis;1.37052046827684e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.45650243476692e-05!GO:0051170;nuclear import;1.50320893168763e-05!GO:0043066;negative regulation of apoptosis;1.52644360366957e-05!GO:0019867;outer membrane;1.53712175455633e-05!GO:0032561;guanyl ribonucleotide binding;1.55776573540263e-05!GO:0019001;guanyl nucleotide binding;1.55776573540263e-05!GO:0043067;regulation of programmed cell death;1.65164724286503e-05!GO:0003724;RNA helicase activity;1.68956192168485e-05!GO:0031324;negative regulation of cellular metabolic process;1.83823109899319e-05!GO:0005657;replication fork;1.88858485195825e-05!GO:0005770;late endosome;1.99431293760028e-05!GO:0043021;ribonucleoprotein binding;2.02978309716573e-05!GO:0000151;ubiquitin ligase complex;2.07677574964026e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.15175760389242e-05!GO:0032446;protein modification by small protein conjugation;2.20012214644902e-05!GO:0043623;cellular protein complex assembly;2.24621581394041e-05!GO:0044452;nucleolar part;2.25310757950166e-05!GO:0030867;rough endoplasmic reticulum membrane;2.42868873813666e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.7816579458746e-05!GO:0009165;nucleotide biosynthetic process;2.93786053133786e-05!GO:0016023;cytoplasmic membrane-bound vesicle;3.03166911079771e-05!GO:0045454;cell redox homeostasis;3.09507540256829e-05!GO:0016567;protein ubiquitination;3.37021899374615e-05!GO:0031988;membrane-bound vesicle;3.59481567240402e-05!GO:0006626;protein targeting to mitochondrion;3.68502199383689e-05!GO:0006606;protein import into nucleus;4.11859316704653e-05!GO:0006916;anti-apoptosis;4.54166435219079e-05!GO:0000786;nucleosome;4.54166435219079e-05!GO:0008094;DNA-dependent ATPase activity;4.82894671575763e-05!GO:0005741;mitochondrial outer membrane;5.90903671039902e-05!GO:0043681;protein import into mitochondrion;6.00014942037625e-05!GO:0005798;Golgi-associated vesicle;6.71089432466269e-05!GO:0015980;energy derivation by oxidation of organic compounds;6.7709891507843e-05!GO:0005769;early endosome;7.61386006559072e-05!GO:0007088;regulation of mitosis;8.13872043456726e-05!GO:0006612;protein targeting to membrane;8.59034419644549e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;9.58637760210523e-05!GO:0006383;transcription from RNA polymerase III promoter;9.58637760210523e-05!GO:0033116;ER-Golgi intermediate compartment membrane;0.000101226599101083!GO:0045786;negative regulation of progression through cell cycle;0.000108513228727585!GO:0006793;phosphorus metabolic process;0.000115353652237942!GO:0006796;phosphate metabolic process;0.000115353652237942!GO:0051087;chaperone binding;0.000133749416476466!GO:0009892;negative regulation of metabolic process;0.000143603868170458!GO:0003714;transcription corepressor activity;0.000148367163270881!GO:0005048;signal sequence binding;0.000151242042617357!GO:0016564;transcription repressor activity;0.000173052559164318!GO:0006302;double-strand break repair;0.00017601279446773!GO:0030880;RNA polymerase complex;0.000184937892240422!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000185772775351511!GO:0004527;exonuclease activity;0.000213717899435657!GO:0030133;transport vesicle;0.000224834230293218!GO:0000776;kinetochore;0.000226200217208652!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00023568253097478!GO:0046474;glycerophospholipid biosynthetic process;0.000239619667152097!GO:0005885;Arp2/3 protein complex;0.000244751656779968!GO:0031982;vesicle;0.000250295657594464!GO:0051052;regulation of DNA metabolic process;0.000261433844262701!GO:0031410;cytoplasmic vesicle;0.000270213650011755!GO:0004576;oligosaccharyl transferase activity;0.000271431470015172!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000281130388559186!GO:0005773;vacuole;0.000285820364773624!GO:0003690;double-stranded DNA binding;0.000285820364773624!GO:0042802;identical protein binding;0.000297352610032675!GO:0051427;hormone receptor binding;0.000299367281403856!GO:0008168;methyltransferase activity;0.000320265569173468!GO:0008250;oligosaccharyl transferase complex;0.000331381914772847!GO:0003713;transcription coactivator activity;0.000343587411790937!GO:0005791;rough endoplasmic reticulum;0.000346608747519186!GO:0051789;response to protein stimulus;0.000362083767165418!GO:0006986;response to unfolded protein;0.000362083767165418!GO:0016741;transferase activity, transferring one-carbon groups;0.000386954535059393!GO:0016310;phosphorylation;0.00038871894885707!GO:0008361;regulation of cell size;0.000412013123159804!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000422711610935785!GO:0031072;heat shock protein binding;0.000430615836747171!GO:0050794;regulation of cellular process;0.000430615836747171!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000437491234232657!GO:0051168;nuclear export;0.000440048567585776!GO:0007006;mitochondrial membrane organization and biogenesis;0.000457506134160763!GO:0016568;chromatin modification;0.000473445354546955!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000473445354546955!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000476587291010518!GO:0000428;DNA-directed RNA polymerase complex;0.000476587291010518!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000477975116675983!GO:0008186;RNA-dependent ATPase activity;0.000480128730907836!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000515512895175369!GO:0016563;transcription activator activity;0.000534042693445225!GO:0016049;cell growth;0.000542830478009943!GO:0019899;enzyme binding;0.000542830478009943!GO:0019843;rRNA binding;0.000543329464537301!GO:0035257;nuclear hormone receptor binding;0.000605527766594817!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000618623650311944!GO:0006839;mitochondrial transport;0.000658642722757738!GO:0003684;damaged DNA binding;0.000682896826578708!GO:0000049;tRNA binding;0.00071786150256513!GO:0000059;protein import into nucleus, docking;0.00071786150256513!GO:0007010;cytoskeleton organization and biogenesis;0.00071786150256513!GO:0046489;phosphoinositide biosynthetic process;0.000723625034648441!GO:0046483;heterocycle metabolic process;0.00076622401404231!GO:0018196;peptidyl-asparagine modification;0.000772250032362827!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000772250032362827!GO:0001558;regulation of cell growth;0.000783236851889817!GO:0007093;mitotic cell cycle checkpoint;0.000812083326214886!GO:0051920;peroxiredoxin activity;0.000818469733880129!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000826243495842324!GO:0016126;sterol biosynthetic process;0.000900387597546625!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00093714028646616!GO:0030663;COPI coated vesicle membrane;0.000948018029315568!GO:0030126;COPI vesicle coat;0.000948018029315568!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000974004410518616!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000974004410518616!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000974004410518616!GO:0003729;mRNA binding;0.00102750111293955!GO:0004518;nuclease activity;0.00103821480444175!GO:0008180;signalosome;0.00106799596574613!GO:0048500;signal recognition particle;0.00109344627694974!GO:0005905;coated pit;0.00111268741810229!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00112334042610199!GO:0004004;ATP-dependent RNA helicase activity;0.00120338604541151!GO:0016363;nuclear matrix;0.00121159011002039!GO:0000323;lytic vacuole;0.00125334689353815!GO:0005764;lysosome;0.00125334689353815!GO:0008312;7S RNA binding;0.0012597322149108!GO:0003678;DNA helicase activity;0.00128518489868065!GO:0000082;G1/S transition of mitotic cell cycle;0.00143339889121253!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00147407943778453!GO:0044262;cellular carbohydrate metabolic process;0.00153300015238623!GO:0046467;membrane lipid biosynthetic process;0.0015355806422116!GO:0016481;negative regulation of transcription;0.00154015417568509!GO:0009112;nucleobase metabolic process;0.00155308566640966!GO:0005684;U2-dependent spliceosome;0.00165326524015286!GO:0007059;chromosome segregation;0.001674248094707!GO:0051252;regulation of RNA metabolic process;0.00171123992200126!GO:0050662;coenzyme binding;0.00172919200179145!GO:0030036;actin cytoskeleton organization and biogenesis;0.00173120290242028!GO:0006414;translational elongation;0.00173907483062439!GO:0007052;mitotic spindle organization and biogenesis;0.00179943510841063!GO:0006310;DNA recombination;0.00186855259098222!GO:0008610;lipid biosynthetic process;0.00187231501685248!GO:0000178;exosome (RNase complex);0.00193864378096799!GO:0019752;carboxylic acid metabolic process;0.0019698992187411!GO:0030176;integral to endoplasmic reticulum membrane;0.00201854079693608!GO:0009116;nucleoside metabolic process;0.00203316671727073!GO:0006082;organic acid metabolic process;0.00204588786195089!GO:0051539;4 iron, 4 sulfur cluster binding;0.00218212483267016!GO:0048522;positive regulation of cellular process;0.00232346025852111!GO:0006275;regulation of DNA replication;0.00238726603977662!GO:0043488;regulation of mRNA stability;0.002415069711561!GO:0043487;regulation of RNA stability;0.002415069711561!GO:0006979;response to oxidative stress;0.00250773371694545!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00254329845429886!GO:0045047;protein targeting to ER;0.00254329845429886!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00270537549569075!GO:0015399;primary active transmembrane transporter activity;0.00270537549569075!GO:0032508;DNA duplex unwinding;0.00280352038800427!GO:0032392;DNA geometric change;0.00280352038800427!GO:0015631;tubulin binding;0.00287049796392977!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00288291572300135!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00288291572300135!GO:0015002;heme-copper terminal oxidase activity;0.00288291572300135!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00288291572300135!GO:0004129;cytochrome-c oxidase activity;0.00288291572300135!GO:0016044;membrane organization and biogenesis;0.00300261838289469!GO:0006891;intra-Golgi vesicle-mediated transport;0.00302593020429279!GO:0008139;nuclear localization sequence binding;0.00311843716119492!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00314424201809166!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00318161476532517!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00318161476532517!GO:0051540;metal cluster binding;0.00325836580783108!GO:0051536;iron-sulfur cluster binding;0.00325836580783108!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00330669930577115!GO:0048144;fibroblast proliferation;0.00331848234735933!GO:0048145;regulation of fibroblast proliferation;0.00331848234735933!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00333672428326625!GO:0030137;COPI-coated vesicle;0.00340305605163771!GO:0051287;NAD binding;0.00340665676264531!GO:0006352;transcription initiation;0.00362183867310364!GO:0006268;DNA unwinding during replication;0.00373366972000242!GO:0048146;positive regulation of fibroblast proliferation;0.00381188199194906!GO:0005758;mitochondrial intermembrane space;0.00416318236175939!GO:0006695;cholesterol biosynthetic process;0.00428304232930519!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00429277575585207!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00429277575585207!GO:0009451;RNA modification;0.00434917511657349!GO:0006402;mRNA catabolic process;0.004652648042258!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00469709604234771!GO:0006144;purine base metabolic process;0.00481586137026762!GO:0007243;protein kinase cascade;0.00481586137026762!GO:0030132;clathrin coat of coated pit;0.00520704437129827!GO:0004532;exoribonuclease activity;0.00537570330981205!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00537570330981205!GO:0008408;3'-5' exonuclease activity;0.00590060955445888!GO:0065009;regulation of a molecular function;0.00596994649125872!GO:0043022;ribosome binding;0.00598234582332089!GO:0007050;cell cycle arrest;0.00598960682667021!GO:0032984;macromolecular complex disassembly;0.00600657243223512!GO:0006595;polyamine metabolic process;0.00609614582878222!GO:0048471;perinuclear region of cytoplasm;0.00658950628815845!GO:0006740;NADPH regeneration;0.00667725583275841!GO:0006098;pentose-phosphate shunt;0.00667725583275841!GO:0006506;GPI anchor biosynthetic process;0.00677812839041618!GO:0006401;RNA catabolic process;0.00685038606777015!GO:0006118;electron transport;0.00687518539263992!GO:0016251;general RNA polymerase II transcription factor activity;0.00696602025095493!GO:0007346;regulation of progression through mitotic cell cycle;0.00697050847134861!GO:0006220;pyrimidine nucleotide metabolic process;0.00697050847134861!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00697050847134861!GO:0005869;dynactin complex;0.00706851655613759!GO:0016272;prefoldin complex;0.0071005390338874!GO:0030027;lamellipodium;0.00737077813964802!GO:0015992;proton transport;0.00748689306168132!GO:0016197;endosome transport;0.00757542142017572!GO:0006818;hydrogen transport;0.00765738782081231!GO:0030145;manganese ion binding;0.00774055953125471!GO:0048487;beta-tubulin binding;0.00776724056483263!GO:0030134;ER to Golgi transport vesicle;0.00778702288242353!GO:0003746;translation elongation factor activity;0.00789908636551869!GO:0035258;steroid hormone receptor binding;0.00796287443083155!GO:0000339;RNA cap binding;0.00801414061481122!GO:0042158;lipoprotein biosynthetic process;0.00801414061481122!GO:0006611;protein export from nucleus;0.00809526532424553!GO:0000910;cytokinesis;0.00816713455726186!GO:0006497;protein amino acid lipidation;0.00843653373785661!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00849677401518025!GO:0005832;chaperonin-containing T-complex;0.00868570879894123!GO:0004177;aminopeptidase activity;0.00871151914990459!GO:0031970;organelle envelope lumen;0.00874679680556848!GO:0030029;actin filament-based process;0.00882064332151244!GO:0006520;amino acid metabolic process;0.00905307738164424!GO:0006778;porphyrin metabolic process;0.00928517126564535!GO:0033013;tetrapyrrole metabolic process;0.00928517126564535!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00937624797638912!GO:0005876;spindle microtubule;0.00942907201229813!GO:0005637;nuclear inner membrane;0.00954642780171628!GO:0009303;rRNA transcription;0.0097626245656576!GO:0006650;glycerophospholipid metabolic process;0.0097626245656576!GO:0043284;biopolymer biosynthetic process;0.00989213267144183!GO:0030127;COPII vesicle coat;0.0098986589790734!GO:0012507;ER to Golgi transport vesicle membrane;0.0098986589790734!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00992566195935247!GO:0043596;nuclear replication fork;0.0100503708508868!GO:0008047;enzyme activator activity;0.0100702443145268!GO:0000922;spindle pole;0.010208713330716!GO:0030521;androgen receptor signaling pathway;0.0104774498494483!GO:0030658;transport vesicle membrane;0.0104774498494483!GO:0001726;ruffle;0.0105039542584774!GO:0043241;protein complex disassembly;0.0105580377937659!GO:0003682;chromatin binding;0.0106647608796546!GO:0017166;vinculin binding;0.0109001489773005!GO:0015036;disulfide oxidoreductase activity;0.0110954326751608!GO:0016408;C-acyltransferase activity;0.0112036720623459!GO:0005862;muscle thin filament tropomyosin;0.0112140308777383!GO:0006405;RNA export from nucleus;0.0116524219891534!GO:0008632;apoptotic program;0.0119216825083109!GO:0005874;microtubule;0.0120369609382007!GO:0007021;tubulin folding;0.0120469732888997!GO:0006509;membrane protein ectodomain proteolysis;0.0121805736403453!GO:0033619;membrane protein proteolysis;0.0121805736403453!GO:0003711;transcription elongation regulator activity;0.0122104423715573!GO:0006505;GPI anchor metabolic process;0.0122104423715573!GO:0008283;cell proliferation;0.0124202078869902!GO:0031625;ubiquitin protein ligase binding;0.012485527791719!GO:0022890;inorganic cation transmembrane transporter activity;0.012488394375444!GO:0031124;mRNA 3'-end processing;0.0126005261670168!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0129676220553741!GO:0043624;cellular protein complex disassembly;0.0130289693731476!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.013138710702989!GO:0000287;magnesium ion binding;0.0132862244154593!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0134774311916533!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0135716391368012!GO:0046870;cadmium ion binding;0.0142113997840667!GO:0031902;late endosome membrane;0.0144001314585907!GO:0042770;DNA damage response, signal transduction;0.0145666654257257!GO:0048037;cofactor binding;0.0146159376852963!GO:0000096;sulfur amino acid metabolic process;0.0147408442587373!GO:0009124;nucleoside monophosphate biosynthetic process;0.0152109822643735!GO:0009123;nucleoside monophosphate metabolic process;0.0152109822643735!GO:0031901;early endosome membrane;0.0157324482344867!GO:0004003;ATP-dependent DNA helicase activity;0.0160706382960417!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0163184058132809!GO:0043492;ATPase activity, coupled to movement of substances;0.0163184058132809!GO:0008637;apoptotic mitochondrial changes;0.0164486951627861!GO:0016860;intramolecular oxidoreductase activity;0.0169752926338543!GO:0031418;L-ascorbic acid binding;0.0169889137151465!GO:0006289;nucleotide-excision repair;0.0171087713834101!GO:0030118;clathrin coat;0.0173648744334926!GO:0006007;glucose catabolic process;0.0174282790002601!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0174826565768878!GO:0045039;protein import into mitochondrial inner membrane;0.0174826565768878!GO:0051101;regulation of DNA binding;0.0175775246119097!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0178207107948881!GO:0005732;small nucleolar ribonucleoprotein complex;0.0181779913286543!GO:0033673;negative regulation of kinase activity;0.0185203190063923!GO:0006469;negative regulation of protein kinase activity;0.0185203190063923!GO:0000175;3'-5'-exoribonuclease activity;0.0185476501381131!GO:0019206;nucleoside kinase activity;0.0189074781901671!GO:0040008;regulation of growth;0.0189074781901671!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0189074781901671!GO:0008538;proteasome activator activity;0.0190297301553956!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0191032240498934!GO:0008022;protein C-terminus binding;0.019320033086803!GO:0051348;negative regulation of transferase activity;0.0200564717176598!GO:0031371;ubiquitin conjugating enzyme complex;0.0203132405153868!GO:0000725;recombinational repair;0.0203132405153868!GO:0000724;double-strand break repair via homologous recombination;0.0203132405153868!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0203221545511864!GO:0031570;DNA integrity checkpoint;0.020378073312676!GO:0005669;transcription factor TFIID complex;0.0204618435500837!GO:0008320;protein transmembrane transporter activity;0.0218885230404864!GO:0007017;microtubule-based process;0.0225952078114149!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0230106697121384!GO:0030833;regulation of actin filament polymerization;0.0233178111288862!GO:0007034;vacuolar transport;0.0233178111288862!GO:0003756;protein disulfide isomerase activity;0.0233945364003413!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0233945364003413!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0242639787482581!GO:0030660;Golgi-associated vesicle membrane;0.0242724386604696!GO:0046112;nucleobase biosynthetic process;0.0247493462948303!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0247845513712926!GO:0006790;sulfur metabolic process;0.0251531111105076!GO:0022411;cellular component disassembly;0.0252035093403583!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0252035093403583!GO:0016584;nucleosome positioning;0.0252035093403583!GO:0043601;nuclear replisome;0.0253042734188232!GO:0030894;replisome;0.0253042734188232!GO:0006284;base-excision repair;0.0254847464214746!GO:0006360;transcription from RNA polymerase I promoter;0.0254847464214746!GO:0030041;actin filament polymerization;0.0256899806557636!GO:0006733;oxidoreduction coenzyme metabolic process;0.0257810105301522!GO:0042168;heme metabolic process;0.0267356135238929!GO:0031529;ruffle organization and biogenesis;0.0268046839776192!GO:0006400;tRNA modification;0.0273316634743509!GO:0006779;porphyrin biosynthetic process;0.0275490835638397!GO:0033014;tetrapyrrole biosynthetic process;0.0275490835638397!GO:0006739;NADP metabolic process;0.0277491850960025!GO:0007264;small GTPase mediated signal transduction;0.0279333663296494!GO:0009161;ribonucleoside monophosphate metabolic process;0.0279540069554971!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0279540069554971!GO:0030032;lamellipodium biogenesis;0.0280666452276087!GO:0030433;ER-associated protein catabolic process;0.0284405585213824!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0284405585213824!GO:0050789;regulation of biological process;0.0289850337363842!GO:0046128;purine ribonucleoside metabolic process;0.0296120668083106!GO:0042278;purine nucleoside metabolic process;0.0296120668083106!GO:0051098;regulation of binding;0.0300904223791365!GO:0030508;thiol-disulfide exchange intermediate activity;0.0319611836730436!GO:0009119;ribonucleoside metabolic process;0.0323578407789177!GO:0008092;cytoskeletal protein binding;0.0323693369934588!GO:0006417;regulation of translation;0.0323693369934588!GO:0043414;biopolymer methylation;0.0334616029321001!GO:0006378;mRNA polyadenylation;0.0335606147472928!GO:0006892;post-Golgi vesicle-mediated transport;0.0337136267456928!GO:0050681;androgen receptor binding;0.0339199224897339!GO:0007040;lysosome organization and biogenesis;0.0339442612508769!GO:0016407;acetyltransferase activity;0.0341936060602621!GO:0008234;cysteine-type peptidase activity;0.0342091117100441!GO:0035035;histone acetyltransferase binding;0.0342091117100441!GO:0000152;nuclear ubiquitin ligase complex;0.0342316037884955!GO:0051128;regulation of cellular component organization and biogenesis;0.0342844000908647!GO:0022408;negative regulation of cell-cell adhesion;0.034800529506837!GO:0030384;phosphoinositide metabolic process;0.0349952681543573!GO:0032259;methylation;0.0350604550788857!GO:0000228;nuclear chromosome;0.0354689668383956!GO:0008652;amino acid biosynthetic process;0.0357221595437796!GO:0006221;pyrimidine nucleotide biosynthetic process;0.0357221595437796!GO:0005851;eukaryotic translation initiation factor 2B complex;0.0364262989619156!GO:0009967;positive regulation of signal transduction;0.0370030892544408!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0370030892544408!GO:0010257;NADH dehydrogenase complex assembly;0.0370030892544408!GO:0033108;mitochondrial respiratory chain complex assembly;0.0370030892544408!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0383829663201904!GO:0005784;translocon complex;0.0385627865300501!GO:0031123;RNA 3'-end processing;0.03875509057141!GO:0045792;negative regulation of cell size;0.03875509057141!GO:0006376;mRNA splice site selection;0.0390268405192412!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0390268405192412!GO:0030911;TPR domain binding;0.0394880666767353!GO:0006541;glutamine metabolic process;0.0394880666767353!GO:0035267;NuA4 histone acetyltransferase complex;0.0394880666767353!GO:0004540;ribonuclease activity;0.0398448897428929!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.040174638940254!GO:0030308;negative regulation of cell growth;0.0406114621407815!GO:0008536;Ran GTPase binding;0.0407437304783386!GO:0007569;cell aging;0.0412724859329895!GO:0005801;cis-Golgi network;0.0412724859329895!GO:0047485;protein N-terminus binding;0.0412847717324593!GO:0006266;DNA ligation;0.0412847717324593!GO:0046519;sphingoid metabolic process;0.0418310540577209!GO:0005092;GDP-dissociation inhibitor activity;0.0418310540577209!GO:0008097;5S rRNA binding;0.041921359825257!GO:0000819;sister chromatid segregation;0.041945084727201!GO:0003923;GPI-anchor transamidase activity;0.0424928710860606!GO:0016255;attachment of GPI anchor to protein;0.0424928710860606!GO:0042765;GPI-anchor transamidase complex;0.0424928710860606!GO:0032200;telomere organization and biogenesis;0.042564520210487!GO:0000723;telomere maintenance;0.042564520210487!GO:0048660;regulation of smooth muscle cell proliferation;0.0430908174151038!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0437294106665592!GO:0006730;one-carbon compound metabolic process;0.0442594459452375!GO:0000070;mitotic sister chromatid segregation;0.0443440660799592!GO:0043189;H4/H2A histone acetyltransferase complex;0.044536945328795!GO:0005588;collagen type V;0.0446738386950517!GO:0004448;isocitrate dehydrogenase activity;0.0448383872858873!GO:0042393;histone binding;0.0449928340903162!GO:0000077;DNA damage checkpoint;0.0461815551755888!GO:0030496;midbody;0.0463835477383758!GO:0008287;protein serine/threonine phosphatase complex;0.0464103809330861!GO:0031543;peptidyl-proline dioxygenase activity;0.0464362120444672!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0485385084343149!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.048956209899395!GO:0009262;deoxyribonucleotide metabolic process;0.0492978223661155!GO:0006270;DNA replication initiation;0.0493681155725428!GO:0030125;clathrin vesicle coat;0.049824814988476!GO:0030665;clathrin coated vesicle membrane;0.049824814988476!GO:0051270;regulation of cell motility;0.0499026257052154
|sample_id=11217
|sample_id=11217
|sample_note=machine failed, remainder reloaded, low amount
|sample_note=machine failed, remainder reloaded, low amount
Line 76: Line 105:
|sample_tissue=adipose tissue
|sample_tissue=adipose tissue
|top_motifs=NKX2-2,8:1.71464878965;IKZF1:1.1906642685;HES1:1.15300629331;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.09591637744;NR3C1:1.02232166857;TAL1_TCF{3,4,12}:1.00139571189;HSF1,2:0.971376585072;EN1,2:0.970833207221;ZNF238:0.958002186392;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.88481447979;HOX{A4,D4}:0.84401883356;GFI1B:0.834644183824;PAX8:0.831247182371;TFDP1:0.815853402571;MYBL2:0.810295337457;E2F1..5:0.736156406927;FOXL1:0.681276191965;NFATC1..3:0.639538300555;YY1:0.628659033597;NR6A1:0.621351980202;GLI1..3:0.610231843624;TEF:0.577157009666;GFI1:0.570779920334;POU3F1..4:0.550799552372;AR:0.523021585348;TBP:0.509471194292;AHR_ARNT_ARNT2:0.50915665155;HOX{A6,A7,B6,B7}:0.487472201537;RXR{A,B,G}:0.481065105862;FOXD3:0.456745608269;LEF1_TCF7_TCF7L1,2:0.430799612881;SRF:0.423326710753;SOX5:0.406325218651;NFE2L2:0.381563263754;NR5A1,2:0.367140774729;NFIX:0.364884161543;NANOG{mouse}:0.359171209003;MYB:0.352775048397;HAND1,2:0.349661572565;ZNF384:0.318717780871;TLX1..3_NFIC{dimer}:0.31652892747;PBX1:0.304295759439;ESRRA:0.285739948417;XBP1:0.283902990189;LHX3,4:0.28337835004;NANOG:0.28199350463;HOX{A5,B5}:0.278506989878;UFEwm:0.276574378781;CDC5L:0.275920462146;ESR1:0.272994204424;FOXQ1:0.249097545704;FOS_FOS{B,L1}_JUN{B,D}:0.238625968959;TEAD1:0.237767618805;ELK1,4_GABP{A,B1}:0.226375180371;TP53:0.207133678294;PAX4:0.199390260067;PDX1:0.193569463322;GATA4:0.189617881816;BACH2:0.18721526713;ATF6:0.184217850855;TFCP2:0.181193114962;NR1H4:0.16614987399;MAFB:0.165765748033;ELF1,2,4:0.165448463156;ALX4:0.16540602762;HNF1A:0.164220068891;HMGA1,2:0.1595434018;STAT2,4,6:0.154728436302;PRDM1:0.154393207844;ZIC1..3:0.152518680916;NFY{A,B,C}:0.147828444172;CRX:0.132223615064;EVI1:0.103644473683;RFX1:0.102249061872;XCPE1{core}:0.0974524769921;HBP1_HMGB_SSRP1_UBTF:0.0971474580121;SOX17:0.0920117669772;ZNF143:0.0865617637817;HLF:0.0863680554182;GZF1:0.074411192642;FOSL2:0.0722473632287;bHLH_family:0.0665588026999;GTF2A1,2:0.0626148593096;SPZ1:0.055865767331;KLF4:0.0523676960485;TBX4,5:0.0353978819815;TFAP4:0.0316395186786;NKX3-2:0.0222679855844;NKX2-1,4:0.0201687835224;PAX1,9:0.0180024754516;HOXA9_MEIS1:0.0119726198616;PRRX1,2:0.00775715345471;POU6F1:0.00281338571443;ADNP_IRX_SIX_ZHX:-0.0111945950616;NKX2-3_NKX2-5:-0.0218459346103;ARID5B:-0.0220449494484;SOX{8,9,10}:-0.0537999607126;POU1F1:-0.0642310880496;MEF2{A,B,C,D}:-0.0645557876841;NKX3-1:-0.0754098150137;NFE2:-0.0772623545339;T:-0.0837556434283;MTF1:-0.0881012849418;EBF1:-0.0998762000844;ZNF423:-0.115088552538;GTF2I:-0.12157486177;AIRE:-0.1253401131;PAX3,7:-0.129061036845;RUNX1..3:-0.132908340885;RBPJ:-0.133030362358;SMAD1..7,9:-0.134676741348;ETS1,2:-0.143157434921;ALX1:-0.143592742037;CREB1:-0.150399111362;DMAP1_NCOR{1,2}_SMARC:-0.154258879163;HIF1A:-0.168720389739;PPARG:-0.17427097816;ZNF148:-0.175525653526;POU2F1..3:-0.176337394704;HNF4A_NR2F1,2:-0.181558154197;NFIL3:-0.189457914903;NFKB1_REL_RELA:-0.194253831321;NRF1:-0.198325928592;GATA6:-0.205095987733;ZBTB16:-0.207447803947;TOPORS:-0.220481154223;STAT5{A,B}:-0.225064760578;FOXA2:-0.229148024676;RXRA_VDR{dimer}:-0.243439656847;PAX2:-0.245282644697;SPIB:-0.248237179832;POU5F1:-0.266149310362;JUN:-0.272008039962;PAX5:-0.272917083132;IRF1,2:-0.28571894812;GCM1,2:-0.293342617893;CUX2:-0.300057924729;SPI1:-0.303186554417;NHLH1,2:-0.304495597495;VSX1,2:-0.309225550931;CEBPA,B_DDIT3:-0.309723175479;FOX{I1,J2}:-0.332153351513;ZBTB6:-0.341948669231;REST:-0.341988971396;MZF1:-0.342283734124;TFAP2{A,C}:-0.375817876881;OCT4_SOX2{dimer}:-0.396662989766;ONECUT1,2:-0.413189670205;IRF7:-0.434537379114;SOX2:-0.436404882722;MTE{core}:-0.439843945184;TGIF1:-0.441020919302;FOXP1:-0.446860448741;FOX{D1,D2}:-0.450451032538;NFE2L1:-0.462344852709;BPTF:-0.490473650263;STAT1,3:-0.552774158187;HIC1:-0.558788514171;FOXO1,3,4:-0.564749247033;ATF2:-0.567295778097;ZFP161:-0.568549344755;DBP:-0.569938600698;FOXM1:-0.586826299767;TLX2:-0.613186518197;RORA:-0.624184477253;MYFfamily:-0.628155625007;PAX6:-0.651404595038;PATZ1:-0.66528730359;BREu{core}:-0.668962154878;IKZF2:-0.674870845406;CDX1,2,4:-0.682629099932;TFAP2B:-0.69139302297;RFX2..5_RFXANK_RFXAP:-0.70014262893;SP1:-0.738709028996;PITX1..3:-0.742856302532;EGR1..3:-0.748976324195;FOXP3:-0.755624995801;ATF5_CREB3:-0.757685935894;LMO2:-0.760673758822;HMX1:-0.764321595229;MAZ:-0.793206792296;FOXN1:-0.805324118077;MED-1{core}:-0.841937194198;RREB1:-0.843818699961;SNAI1..3:-0.883134032335;FOX{F1,F2,J1}:-0.884299437336;ZEB1:-0.893974462741;ATF4:-0.919715725583;MYOD1:-0.927389397081;NKX6-1,2:-0.928855862483;SREBF1,2:-1.00383256256;EP300:-1.10243071671
|top_motifs=NKX2-2,8:1.71464878965;IKZF1:1.1906642685;HES1:1.15300629331;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.09591637744;NR3C1:1.02232166857;TAL1_TCF{3,4,12}:1.00139571189;HSF1,2:0.971376585072;EN1,2:0.970833207221;ZNF238:0.958002186392;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.88481447979;HOX{A4,D4}:0.84401883356;GFI1B:0.834644183824;PAX8:0.831247182371;TFDP1:0.815853402571;MYBL2:0.810295337457;E2F1..5:0.736156406927;FOXL1:0.681276191965;NFATC1..3:0.639538300555;YY1:0.628659033597;NR6A1:0.621351980202;GLI1..3:0.610231843624;TEF:0.577157009666;GFI1:0.570779920334;POU3F1..4:0.550799552372;AR:0.523021585348;TBP:0.509471194292;AHR_ARNT_ARNT2:0.50915665155;HOX{A6,A7,B6,B7}:0.487472201537;RXR{A,B,G}:0.481065105862;FOXD3:0.456745608269;LEF1_TCF7_TCF7L1,2:0.430799612881;SRF:0.423326710753;SOX5:0.406325218651;NFE2L2:0.381563263754;NR5A1,2:0.367140774729;NFIX:0.364884161543;NANOG{mouse}:0.359171209003;MYB:0.352775048397;HAND1,2:0.349661572565;ZNF384:0.318717780871;TLX1..3_NFIC{dimer}:0.31652892747;PBX1:0.304295759439;ESRRA:0.285739948417;XBP1:0.283902990189;LHX3,4:0.28337835004;NANOG:0.28199350463;HOX{A5,B5}:0.278506989878;UFEwm:0.276574378781;CDC5L:0.275920462146;ESR1:0.272994204424;FOXQ1:0.249097545704;FOS_FOS{B,L1}_JUN{B,D}:0.238625968959;TEAD1:0.237767618805;ELK1,4_GABP{A,B1}:0.226375180371;TP53:0.207133678294;PAX4:0.199390260067;PDX1:0.193569463322;GATA4:0.189617881816;BACH2:0.18721526713;ATF6:0.184217850855;TFCP2:0.181193114962;NR1H4:0.16614987399;MAFB:0.165765748033;ELF1,2,4:0.165448463156;ALX4:0.16540602762;HNF1A:0.164220068891;HMGA1,2:0.1595434018;STAT2,4,6:0.154728436302;PRDM1:0.154393207844;ZIC1..3:0.152518680916;NFY{A,B,C}:0.147828444172;CRX:0.132223615064;EVI1:0.103644473683;RFX1:0.102249061872;XCPE1{core}:0.0974524769921;HBP1_HMGB_SSRP1_UBTF:0.0971474580121;SOX17:0.0920117669772;ZNF143:0.0865617637817;HLF:0.0863680554182;GZF1:0.074411192642;FOSL2:0.0722473632287;bHLH_family:0.0665588026999;GTF2A1,2:0.0626148593096;SPZ1:0.055865767331;KLF4:0.0523676960485;TBX4,5:0.0353978819815;TFAP4:0.0316395186786;NKX3-2:0.0222679855844;NKX2-1,4:0.0201687835224;PAX1,9:0.0180024754516;HOXA9_MEIS1:0.0119726198616;PRRX1,2:0.00775715345471;POU6F1:0.00281338571443;ADNP_IRX_SIX_ZHX:-0.0111945950616;NKX2-3_NKX2-5:-0.0218459346103;ARID5B:-0.0220449494484;SOX{8,9,10}:-0.0537999607126;POU1F1:-0.0642310880496;MEF2{A,B,C,D}:-0.0645557876841;NKX3-1:-0.0754098150137;NFE2:-0.0772623545339;T:-0.0837556434283;MTF1:-0.0881012849418;EBF1:-0.0998762000844;ZNF423:-0.115088552538;GTF2I:-0.12157486177;AIRE:-0.1253401131;PAX3,7:-0.129061036845;RUNX1..3:-0.132908340885;RBPJ:-0.133030362358;SMAD1..7,9:-0.134676741348;ETS1,2:-0.143157434921;ALX1:-0.143592742037;CREB1:-0.150399111362;DMAP1_NCOR{1,2}_SMARC:-0.154258879163;HIF1A:-0.168720389739;PPARG:-0.17427097816;ZNF148:-0.175525653526;POU2F1..3:-0.176337394704;HNF4A_NR2F1,2:-0.181558154197;NFIL3:-0.189457914903;NFKB1_REL_RELA:-0.194253831321;NRF1:-0.198325928592;GATA6:-0.205095987733;ZBTB16:-0.207447803947;TOPORS:-0.220481154223;STAT5{A,B}:-0.225064760578;FOXA2:-0.229148024676;RXRA_VDR{dimer}:-0.243439656847;PAX2:-0.245282644697;SPIB:-0.248237179832;POU5F1:-0.266149310362;JUN:-0.272008039962;PAX5:-0.272917083132;IRF1,2:-0.28571894812;GCM1,2:-0.293342617893;CUX2:-0.300057924729;SPI1:-0.303186554417;NHLH1,2:-0.304495597495;VSX1,2:-0.309225550931;CEBPA,B_DDIT3:-0.309723175479;FOX{I1,J2}:-0.332153351513;ZBTB6:-0.341948669231;REST:-0.341988971396;MZF1:-0.342283734124;TFAP2{A,C}:-0.375817876881;OCT4_SOX2{dimer}:-0.396662989766;ONECUT1,2:-0.413189670205;IRF7:-0.434537379114;SOX2:-0.436404882722;MTE{core}:-0.439843945184;TGIF1:-0.441020919302;FOXP1:-0.446860448741;FOX{D1,D2}:-0.450451032538;NFE2L1:-0.462344852709;BPTF:-0.490473650263;STAT1,3:-0.552774158187;HIC1:-0.558788514171;FOXO1,3,4:-0.564749247033;ATF2:-0.567295778097;ZFP161:-0.568549344755;DBP:-0.569938600698;FOXM1:-0.586826299767;TLX2:-0.613186518197;RORA:-0.624184477253;MYFfamily:-0.628155625007;PAX6:-0.651404595038;PATZ1:-0.66528730359;BREu{core}:-0.668962154878;IKZF2:-0.674870845406;CDX1,2,4:-0.682629099932;TFAP2B:-0.69139302297;RFX2..5_RFXANK_RFXAP:-0.70014262893;SP1:-0.738709028996;PITX1..3:-0.742856302532;EGR1..3:-0.748976324195;FOXP3:-0.755624995801;ATF5_CREB3:-0.757685935894;LMO2:-0.760673758822;HMX1:-0.764321595229;MAZ:-0.793206792296;FOXN1:-0.805324118077;MED-1{core}:-0.841937194198;RREB1:-0.843818699961;SNAI1..3:-0.883134032335;FOX{F1,F2,J1}:-0.884299437336;ZEB1:-0.893974462741;ATF4:-0.919715725583;MYOD1:-0.927389397081;NKX6-1,2:-0.928855862483;SREBF1,2:-1.00383256256;EP300:-1.10243071671
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11217-116B2;search_select_hide=table117:FF:11217-116B2
}}
}}

Latest revision as of 16:25, 3 June 2020

Name:Mesenchymal stem cells - adipose, donor0
Species:Human (Homo sapiens)
Library ID:CNhs10844
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueadipose tissue
dev stageNA
sexNA
ageNA
cell typemesenchymal stem cell
cell lineNA
companySciencell
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog number7515
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004820
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10844 CAGE DRX008360 DRR009232
Accession ID Hg19

Library idBAMCTSS
CNhs10844 DRZ000657 DRZ002042
Accession ID Hg38

Library idBAMCTSS
CNhs10844 DRZ012007 DRZ013392
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004820
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10012.GCCAAT sRNA-Seq DRX037186 DRR041552
Accession ID Hg19

Library idBAMCTSS
SRhi10012.GCCAAT DRZ007194


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.143
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.459
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.218
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.026
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.21
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.404
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0501
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.47
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0435
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0209
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.543
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0385
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.388
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.218
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature-0.0211
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.218
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.516
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.673
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.42
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.47
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10844

Jaspar motifP-value
MA0002.20.78
MA0003.10.256
MA0004.10.4
MA0006.10.782
MA0007.10.00762
MA0009.10.899
MA0014.10.782
MA0017.10.317
MA0018.24.29253e-4
MA0019.10.778
MA0024.10.00229
MA0025.10.111
MA0027.10.83
MA0028.10.238
MA0029.10.77
MA0030.18.32454e-4
MA0031.10.132
MA0035.20.486
MA0038.10.176
MA0039.20.887
MA0040.10.532
MA0041.10.62
MA0042.10.661
MA0043.12.09746e-4
MA0046.10.37
MA0047.20.477
MA0048.10.104
MA0050.10.0204
MA0051.10.461
MA0052.10.7
MA0055.10.0184
MA0057.10.489
MA0058.10.446
MA0059.10.00329
MA0060.10.959
MA0061.10.427
MA0062.20.403
MA0065.20.102
MA0066.10.144
MA0067.10.0712
MA0068.10.104
MA0069.10.913
MA0070.10.19
MA0071.10.115
MA0072.10.769
MA0073.10.865
MA0074.10.462
MA0076.10.788
MA0077.10.425
MA0078.10.872
MA0079.20.0797
MA0080.20.0279
MA0081.10.259
MA0083.10.0757
MA0084.10.00133
MA0087.10.385
MA0088.10.00345
MA0090.10.0442
MA0091.10.0427
MA0092.10.128
MA0093.10.362
MA0099.23.20241e-6
MA0100.10.362
MA0101.10.924
MA0102.20.00675
MA0103.10.0066
MA0104.20.0876
MA0105.10.00796
MA0106.10.0221
MA0107.10.769
MA0108.20.0145
MA0111.10.708
MA0112.25.56952e-5
MA0113.10.0595
MA0114.10.283
MA0115.10.93
MA0116.10.00669
MA0117.10.538
MA0119.10.0324
MA0122.10.712
MA0124.10.521
MA0125.10.617
MA0131.10.646
MA0135.10.172
MA0136.10.322
MA0137.20.944
MA0138.20.223
MA0139.10.885
MA0140.10.624
MA0141.10.00692
MA0142.10.819
MA0143.10.859
MA0144.10.363
MA0145.10.379
MA0146.10.693
MA0147.10.0226
MA0148.10.566
MA0149.10.0491
MA0150.10.0963
MA0152.10.0112
MA0153.10.919
MA0154.10.0548
MA0155.10.94
MA0156.10.869
MA0157.10.601
MA0159.10.465
MA0160.10.325
MA0162.10.207
MA0163.16.88709e-6
MA0164.10.839
MA0258.10.0739
MA0259.10.211



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10844

Novel motifP-value
10.0105
100.1
1000.201
1010.549
1020.901
1030.202
1040.323
1050.955
1060.381
1070.0396
1080.936
1090.0136
110.0412
1100.0117
1110.355
1120.664
1130.0734
1140.383
1150.92
1160.0774
1170.135
1180.98
1190.283
120.85
1200.294
1210.304
1220.779
1230.476
1240.695
1250.0872
1260.912
1270.886
1280.486
1290.716
130.0646
1300.00456
1310.874
1320.675
1330.548
1340.0441
1350.916
1360.912
1370.632
1380.46
1390.887
140.159
1400.821
1410.185
1420.438
1430.0452
1440.688
1450.177
1460.1
1470.0523
1480.0452
1490.29
150.0907
1500.164
1510.75
1520.263
1530.817
1540.911
1550.0589
1560.919
1570.618
1580.123
1590.135
160.035
1600.0879
1610.952
1620.38
1630.974
1640.567
1650.657
1660.522
1670.822
1680.115
1690.00709
170.181
180.0673
190.041
20.685
200.551
210.0475
220.391
230.597
240.172
250.704
260.0676
270.647
280.241
290.0734
30.09
300.831
310.838
322.47849e-5
330.0847
340.451
350.764
360.0361
370.0553
380.44
390.191
40.583
400.15
410.722
420.236
430.168
440.587
450.979
460.0328
470.0915
480.0924
490.287
50.288
500.263
510.314
520.83
530.894
540.814
550.717
560.716
570.203
580.967
590.204
60.623
600.604
610.457
620.455
630.188
640.493
650.269
660.197
670.386
680.927
690.523
70.352
700.887
710.0195
720.499
730.0711
740.0531
750.119
760.684
770.0959
780.521
790.347
80.00284
800.735
810.381
820.968
830.04
840.992
850.795
860.869
870.0379
880.783
890.0368
90.247
900.105
910.59
920.281
930.619
940.0693
950.0819
960.244
970.274
980.513
990.0177



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10844


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002570 (mesenchymal stem cell of adipose)

UBERON: Anatomy
0001013 (adipose tissue)
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000096 (human mesenchymal stem cell of adipose sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:11217-116B2&oldid=4576274"