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{{f5samples
{{f5samples
|id=FF:11223-116B8
|DRA_sample_Accession=CAGE@SAMD00004778
|name=Fibroblast - Periodontal Ligament, donor4 (PL29)
|accession_numbers=CAGE;DRX008277;DRR009149;DRZ000574;DRZ001959;DRZ011924;DRZ013309
|sample_id=11223
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0004121,UBERON:0004119,UBERON:0010314,UBERON:0011216,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000075,UBERON:0010317,UBERON:0001555,UBERON:0001758,UBERON:0000153,UBERON:0007811,UBERON:0002204,UBERON:0001434,UBERON:0000165,UBERON:0003672,UBERON:0011137,UBERON:0010323,UBERON:0003129
|rna_tube_id=116B8
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002556
|rna_box=116
|rna_position=B8
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=N/A
|rna_lot_number=
|rna_catalog_number=N/A
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=18 years old adult
|sample_tissue=periodontal ligament
|sample_donor(cell lot)=
|sample_sex=female
|sample_age=18
|sample_ethnicity=A
|rna_rin=6
|rna_od260/230=1.52
|rna_od260/280=2.04
|sample_cell_type=fibroblast
|sample_cell_line=
|sample_collaboration=Mitsuhiro Ohshima (Nihon University School of Dentistry)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=22.65912
|rna_concentration=1.02996
|sample_note=Originally library704 tailing failed, these samples are now being remade in Automation6
|profile_hcage=CNhs12493,LSID916,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371,CL:0002556
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000479,UBERON:0001062,UBERON:0001758,UBERON:0002384,UBERON:0003672
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000067
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr1:170633348..170633399,+!p2@PRRX1!1.87!98.77!PRRX1;;chr9:132427883..132427951,+!p2@PRRX2!1.80!62.77!PRRX2;;chr6:1389789..1389821,+!p1@FOXF2!1.76!77.26!FOXF2;;chr9:132427972..132428056,+!p1@PRRX2!1.75!71.11!PRRX2;;chr7:19157248..19157268,-!p1@TWIST1!1.74!142.67!TWIST1;;chr16:86544113..86544145,+!p1@FOXF1!1.73!64.97!FOXF1;;chr10:28034739..28034756,-!p1@MKX!1.70!49.17!MKX;;chr1:170632285..170632309,+!p1@PRRX1!1.68!53.12!PRRX1;;chr14:61116183..61116208,-!p1@SIX1!1.59!138.28!SIX1;;chr15:57511609..57511651,+!p2@TCF12!1.59!61.90!TCF12;;chr2:200322654..200322707,-!p2@SATB2!1.54!48.73!SATB2;;chr11:46299199..46299233,+!p1@CREB3L1!1.51!157.59!CREB3L1;;chr1:170633262..170633285,+!p3@PRRX1!1.46!32.05!PRRX1;;chr4:4861385..4861398,+!p1@MSX1!1.42!72.43!MSX1;;chr11:46299539..46299620,+!p2@CREB3L1!1.41!41.26!CREB3L1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.41!24.58!ZBED1;;chr6:45296048..45296082,+!p1@RUNX2!1.39!27.22!RUNX2;;chr7:96654133..96654150,-!p1@DLX5!1.38!23.27!DLX5;;chr9:96717629..96717644,-!p1@BARX1!1.38!22.83!BARX1;;chr2:19558373..19558392,-!p1@OSR1!1.37!60.58!OSR1;;chr14:37131058..37131139,+!p1@PAX9!1.37!22.39!PAX9;;chr2:200323414..200323455,-!p1@SATB2!1.33!43.02!SATB2;;chr6:1389824..1389840,+!p3@FOXF2!1.28!18.00!FOXF2;;chr5:72744594..72744609,-!p1@FOXD1!1.26!78.14!FOXD1;;chr17:59477233..59477263,+!p1@TBX2!1.17!42.14!TBX2;;chr2:45236540..45236577,-!p1@SIX2!1.15!13.17!SIX2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.11!12.73!GLIS1;;chr11:65686732..65686756,+!p2@DRAP1!1.09!48.29!DRAP1;;chr1:170633058..170633084,+!p5@PRRX1!1.09!11.41!PRRX1;;chr20:55204351..55204377,+!p1@TFAP2C!1.05!13.17!TFAP2C;;chr2:172949484..172949522,+!p1@DLX1!1.05!10.10!DLX1;;chr11:65686802..65686818,+!p6@DRAP1!1.04!17.56!DRAP1;;chr14:61116168..61116180,-!p2@SIX1!1.02!10.97!SIX1;;chr1:170632959..170632987,+!p4@PRRX1!1.02!10.54!PRRX1;;chr6:1312325..1312340,+!p1@FOXQ1!1.00!14.93!FOXQ1;;chr1:170632137..170632172,+!p10@PRRX1!0.99!8.78!PRRX1;;chr5:321810..321877,+!p1@AHRR!0.98!27.66!AHRR;;chr8:93074803..93074845,-!p1@RUNX1T1!0.97!8.34!RUNX1T1;;chr7:44143925..44143970,+!p1@AEBP1!0.95!182.18!AEBP1;;chr2:172950227..172950249,+!p2@DLX1!0.95!7.90!DLX1;;chr7:19157043..19157088,-!p2@TWIST1!0.94!19.75!TWIST1;;chr2:172967242..172967265,-!p2@DLX2!0.93!7.46!DLX2;;chr14:24837368..24837401,+!p1@NFATC4!0.92!17.56!NFATC4;;chr12:53614115..53614154,-!p1@RARG!0.89!37.75!RARG;;chr11:65687362..65687436,+!p3@DRAP1!0.88!31.61!DRAP1;;chr2:239756671..239756732,+!p1@TWIST2!0.88!21.95!TWIST2;;chr1:170632250..170632277,+!p7@PRRX1!0.88!6.58!PRRX1;;chr1:75600067..75600094,+!p2@LHX8!0.88!6.58!LHX8;;chr11:65687222..65687240,+!p7@DRAP1!0.87!8.34!DRAP1;;chr8:49833978..49833996,-!p1@SNAI2!0.85!134.33!SNAI2;;chr16:54320617..54320643,-!p3@IRX3!0.85!7.90!IRX3;;chr11:46299443..46299459,+!p4@CREB3L1!0.85!6.15!CREB3L1;;chr1:170632723..170632739,+!p8@PRRX1!0.85!6.15!PRRX1;;chr8:49833948..49833973,-!p2@SNAI2!0.84!39.95!SNAI2;;chr16:86600426..86600441,+!p1@FOXC2!0.83!14.93!FOXC2;;chr2:239756739..239756755,+!p2@TWIST2!0.83!10.10!TWIST2;;chr19:31840130..31840160,-!p2@TSHZ3!0.83!9.22!TSHZ3;;chr8:23564065..23564087,-!p1@NKX2-6!0.83!5.71!NKX2-6;;chr1:25291475..25291511,-!p2@RUNX3!0.83!5.71!RUNX3;;chr11:65687158..65687216,+!p4@DRAP1!0.80!32.48!DRAP1;;chr5:72744445..72744466,-!p2@FOXD1!0.80!9.22!FOXD1;;chr15:83953397..83953425,-!p1@BNC1!0.80!6.15!BNC1;;chr2:200322229..200322251,-!p3@SATB2!0.80!5.27!SATB2;;chr1:170632477..170632506,+!p6@PRRX1!0.80!5.27!PRRX1;;chr9:96717678..96717689,-!p2@BARX1!0.80!5.27!BARX1;;chr4:81118647..81118666,+!p1@PRDM8!0.79!7.02!PRDM8;;chr2:172967621..172967637,-!p1@DLX2!0.78!14.49!DLX2;;chr12:80085061..80085119,-!p6@PAWR!0.78!8.34!PAWR;;chr16:54320646..54320672,-!p2@IRX3!0.78!7.90!IRX3;;chr10:63809106..63809127,+!p1@ARID5B!0.77!72.87!ARID5B;;chr14:37132241..37132304,+!p3@PAX9!0.77!4.83!PAX9;;chr5:139492456..139492489,+!p7@PURA!0.77!4.83!PURA;;chr22:19748231..19748317,+!p1@TBX1!0.77!4.83!TBX1;;chr2:200322259..200322280,-!p5@SATB2!0.77!4.83!SATB2;;chr1:170632115..170632136,+!p9@PRRX1!0.77!4.83!PRRX1;;chr1:170632310..170632321,+!p15@PRRX1!0.77!4.83!PRRX1;;chr1:75602043..75602093,+!p1@LHX8!0.77!4.83!LHX8;;chr12:66218255..66218304,+!p3@HMGA2!0.76!13.61!HMGA2;;chr5:72743793..72743855,-!p4@FOXD1!0.76!5.71!FOXD1;;chr12:66218598..66218645,+!p2@HMGA2!0.75!23.70!HMGA2;;chr13:74708029..74708077,-!p2@KLF12!0.74!14.05!KLF12;;chr6:45390025..45390076,+!p2@RUNX2!0.73!11.41!RUNX2;;chrX:66763856..66763896,+!p1@AR!0.73!6.58!AR;;chr6:45390077..45390105,+!p9@RUNX2!0.73!5.71!RUNX2;;chr6:1389989..1390019,+!p2@FOXF2!0.73!4.39!FOXF2;;chr7:96654026..96654061,-!p2@DLX5!0.73!4.39!DLX5;;chr8:60031934..60031986,-!p6@TOX!0.73!4.39!TOX;;chr8:93074848..93074871,-!p3@RUNX1T1!0.73!4.39!RUNX1T1;;chr15:57511589..57511608,+!p4@TCF12!0.73!4.39!TCF12;;chr1:170632439..170632465,+!p11@PRRX1!0.73!4.39!PRRX1;;chr12:80085120..80085156,-!p14@PAWR!0.73!4.39!PAWR;;chr14:37126765..37126799,+!p2@PAX9!0.73!4.39!PAX9;;chr3:150126759..150126784,+!p2@TSC22D2!0.72!21.51!TSC22D2;;chr8:106330656..106330684,+!p1@ZFPM2!0.71!11.85!ZFPM2;;chrX:66763815..66763854,+!p2@AR!0.71!5.71!AR;;chr17:59477275..59477286,+!p3@TBX2!0.71!5.71!TBX2;;chr5:72744562..72744573,-!p3@FOXD1!0.71!5.27!FOXD1;;chr17:59477197..59477212,+!p2@TBX2!0.70!7.46!TBX2;;chr5:174151553..174151610,+!p1@MSX2!0.70!7.02!MSX2;;chr6:34204921..34204939,+!p3@HMGA1!0.69!135.21!HMGA1;;chr12:115121962..115121987,-!p1@TBX3!0.69!36.87!TBX3;;chr17:17726907..17726958,-!p2@SREBF1!0.69!27.22!SREBF1;;chr15:42749722..42749739,-!p2@ZFP106!0.69!7.46!ZFP106;;chr16:86612320..86612394,+!p1@FOXL1!0.69!3.95!FOXL1;;chr10:28032421..28032494,-!p2@MKX!0.69!3.95!MKX;;chr11:46316699..46316719,+!p10@CREB3L1!0.69!3.95!CREB3L1;;chr13:45150455..45150472,-!p8@TSC22D1!0.69!3.95!TSC22D1;;chr2:102091144..102091183,-!p2@RFX8!0.69!3.95!RFX8;;chr2:172967276..172967296,-!p3@DLX2!0.69!3.95!DLX2;;chr6:1389871..1389876,+!p4@FOXF2!0.69!3.95!FOXF2;;chr1:44513995..44514031,+!p1@KLF17!0.69!3.95!KLF17;;chr10:63809013..63809041,+!p3@ARID5B!0.68!23.70!ARID5B;;chr5:133450365..133450444,+!p1@TCF7!0.68!19.75!TCF7;;chr16:54320158..54320200,-!p5@IRX3!0.68!5.71!IRX3;;chr5:176738887..176738934,-!p1@MXD3!0.67!28.53!MXD3;;chr14:73360799..73360817,-!p1@DPF3!0.67!14.49!DPF3;;chr11:65687243..65687276,+!p8@DRAP1!0.67!5.27!DRAP1;;chr2:121493492..121493537,+!p2@GLI2!0.65!6.15!GLI2;;chr16:54320101..54320125,-!p4@IRX3!0.65!5.27!IRX3;;chr11:12696071..12696086,+!p3@TEAD1!0.65!4.83!TEAD1;;chr10:131762504..131762555,-!p1@EBF3!0.65!3.51!EBF3;;chr2:172967323..172967336,-!p4@DLX2!0.65!3.51!DLX2;;chr1:170632683..170632696,+!p12@PRRX1!0.65!3.51!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.65!3.51!PRRX1;;chr17:45928443..45928473,-!p2@SP6!0.65!3.51!SP6;;chr7:28220198..28220269,-!p2@JAZF1!0.64!35.56!JAZF1;;chr12:53625966..53626012,-!p2@RARG!0.64!10.10!RARG;;chr8:72756063..72756125,-!p1@MSC!0.64!7.46!MSC;;chr8:60031762..60031803,-!p3@TOX!0.64!5.27!TOX;;chr3:114343768..114343822,-!p1@ZBTB20!0.63!16.68!ZBTB20;;chr7:44143978..44143989,+!p2@AEBP1!0.63!6.58!AEBP1;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.62!37.75!GLIS2;;chr13:45151259..45151326,-!p2@TSC22D1!0.61!21.51!TSC22D1;;chr18:22932080..22932170,-!p1@ZNF521!0.61!15.36!ZNF521;;chr3:37217736..37217753,-!p2@LRRFIP2!0.61!14.93!LRRFIP2;;chr16:31076332..31076388,-!p3@ZNF668!0.61!3.07!ZNF668;;chr10:28034772..28034783,-!p4@MKX!0.61!3.07!MKX;;chr11:65686952..65686975,+!p5@DRAP1!0.60!19.75!DRAP1;;chr8:72756637..72756664,-!p3@MSC!0.60!3.51!MSC;;chr2:145275162..145275202,-!p2@ZEB2!0.59!20.63!ZEB2;;chr19:13134457..13134462,+!p5@NFIX!0.59!5.71!NFIX;;chr10:63809090..63809097,+!p7@ARID5B!0.59!4.39!ARID5B;;chr12:2986206..2986258,-!p2@FOXM1!0.58!20.63!FOXM1;;chr17:7492684..7492778,-!p2@SOX15!0.57!6.58!SOX15;;chr6:45390002..45390023,+!p6@RUNX2!0.57!5.27!RUNX2;;chr8:60031682..60031710,-!p2@TOX!0.57!4.83!TOX;;chr9:16870659..16870675,-!p2@BNC2!0.57!3.51!BNC2;;chr14:62162258..62162269,+!p2@HIF1A!0.56!31.17!HIF1A;;chr3:52001426..52001447,-!p3@PCBP4!0.56!8.78!PCBP4;;chr16:54320675..54320715,-!p1@IRX3!0.56!6.58!IRX3;;chr2:185463247..185463263,+!p1@ZNF804A!0.56!5.27!ZNF804A;;chr19:47922750..47922795,-!p1@MEIS3!0.56!4.83!MEIS3;;chr1:47903709..47903764,+!p1@BC169308!0.56!3.07!FOXD2;;chr19:47523058..47523114,+!p1@NPAS1!0.56!2.63!NPAS1;;chr19:47910182..47910187,-!p3@MEIS3!0.56!2.63!MEIS3;;chr20:55205791..55205817,+!p3@TFAP2C!0.56!2.63!TFAP2C;;chr20:55205825..55205847,+!p2@TFAP2C!0.56!2.63!TFAP2C;;chr15:80843484..80843499,+!p5@ARNT2!0.56!2.63!ARNT2;;chr11:46333934..46333963,+!p5@CREB3L1!0.56!2.63!CREB3L1;;chr12:115122318..115122331,-!p2@TBX3!0.56!2.63!TBX3;;chr2:172967353..172967365,-!p5@DLX2!0.56!2.63!DLX2;;chr2:46524537..46524553,+!p1@EPAS1!0.55!318.70!EPAS1;;chr14:75894714..75894733,+!p1@JDP2!0.55!92.19!JDP2;;chr3:71179699..71179744,-!p2@FOXP1!0.55!23.70!FOXP1;;chr16:54964740..54964789,+!p1@IRX5!0.54!3.95!IRX5;;chr11:65686776..65686787,+!p9@DRAP1!0.54!3.07!DRAP1;;chr13:74708372..74708409,-!p4@KLF12!0.53!6.58!KLF12;;chr8:67525443..67525459,-!p2@MYBL1!0.53!3.95!MYBL1;;chr15:67357924..67357952,+!p2@SMAD3!0.52!19.75!SMAD3;;chr3:141121847..141121868,+!p5@ZBTB38!0.52!3.95!ZBTB38;;chr13:74708475..74708499,-!p5@KLF12!0.51!6.15!KLF12;;chr5:139487608..139487663,+!p3@PURA!0.51!5.71!PURA;;chr1:25256756..25256774,-!p1@RUNX3!0.51!4.83!RUNX3;;chr9:16870710..16870763,-!p1@BNC2!0.51!4.39!BNC2;;chr7:44143997..44144008,+!p3@AEBP1!0.51!3.07!AEBP1;;chr11:46299186..46299195,+!p3@CREB3L1!0.51!2.63!CREB3L1;;chr11:12695944..12695989,+!p1@TEAD1!0.50!101.84!TEAD1;;chr11:65667884..65667895,-!p2@FOSL1!0.50!10.54!FOSL1;;chr13:45151403..45151433,-!p5@TSC22D1!0.50!5.71!TSC22D1;;chr12:66218212..66218244,+!p5@HMGA2!0.50!3.51!HMGA2;;chr12:80085255..80085284,-!p9@PAWR!0.50!3.51!PAWR;;chr19:45260775..45260838,+!p5@BCL3!0.50!3.07!BCL3;;chr10:31607702..31607755,+!p3@ZEB1!0.50!2.63!ZEB1;;chr10:28035133..28035148,-!p3@MKX!0.50!2.19!MKX;;chr16:54319010..54319041,-!p8@IRX3!0.50!2.19!IRX3;;chr16:86600458..86600461,+!p3@FOXC2!0.50!2.19!FOXC2;;chr2:172949532..172949541,+!p6@DLX1!0.50!2.19!DLX1;;chr1:170633194..1706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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002556;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000075;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010323;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0011137
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 41:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|comment=
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|creation_date=
|def=
|has_quality=
|has_quality=
|is_a=EFO:0002091;;FF:0000002;;FF:0000067;;FF:0000210
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor4%2520%2528PL29%2529.CNhs12493.11223-116B8.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor4%2520%2528PL29%2529.CNhs12493.11223-116B8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor4%2520%2528PL29%2529.CNhs12493.11223-116B8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor4%2520%2528PL29%2529.CNhs12493.11223-116B8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor4%2520%2528PL29%2529.CNhs12493.11223-116B8.hg38.nobarcode.ctss.bed.gz
|id=FF:11223-116B8
|is_a=EFO:0002091;;FF:0000067
|is_obsolete=
|library_id=CNhs12493
|library_id_phase_based=2:CNhs12493
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11223
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11223
|name=Fibroblast - Periodontal Ligament, donor4 (PL29)
|namespace=FANTOM5
|namespace=FANTOM5
|part_of=
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|profile_hcage=CNhs12493,LSID916,release011,COMPLETED
|profile_rnaseq=
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|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=116
|rna_catalog_number=N/A
|rna_concentration=1.02996
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=1.52
|rna_od260/280=2.04
|rna_position=B8
|rna_rin=6
|rna_sample_type=total RNA
|rna_tube_id=116B8
|rna_weight_ug=22.65912
|sample_age=18
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=fibroblast
|sample_collaboration=Mitsuhiro Ohshima (Nihon University School of Dentistry)
|sample_company=N/A
|sample_description=
|sample_dev_stage=18 years old adult
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=A
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.83165858191868e-230!GO:0005737;cytoplasm;7.56813167378128e-185!GO:0043226;organelle;3.29244492738643e-182!GO:0043229;intracellular organelle;6.75562374654467e-182!GO:0043231;intracellular membrane-bound organelle;9.8830523276757e-179!GO:0043227;membrane-bound organelle;2.13733762911077e-178!GO:0044422;organelle part;1.22012804749062e-138!GO:0044446;intracellular organelle part;2.76822887139053e-137!GO:0044444;cytoplasmic part;7.57200528433437e-127!GO:0032991;macromolecular complex;1.04919418113415e-97!GO:0044237;cellular metabolic process;2.06135221957806e-81!GO:0044238;primary metabolic process;4.35902131629007e-81!GO:0005515;protein binding;7.57771073100085e-80!GO:0030529;ribonucleoprotein complex;4.99760142064632e-77!GO:0043170;macromolecule metabolic process;3.66419530459313e-76!GO:0005634;nucleus;1.47532746868752e-69!GO:0043233;organelle lumen;5.08507770028389e-66!GO:0031974;membrane-enclosed lumen;5.08507770028389e-66!GO:0044428;nuclear part;7.51215704156281e-66!GO:0003723;RNA binding;7.80415421612992e-63!GO:0005739;mitochondrion;1.91847649833004e-60!GO:0016043;cellular component organization and biogenesis;3.27729221892682e-53!GO:0043234;protein complex;2.65580678810752e-51!GO:0019538;protein metabolic process;3.42940423160261e-48!GO:0031090;organelle membrane;5.72132885112595e-47!GO:0005840;ribosome;1.29749550600064e-45!GO:0044260;cellular macromolecule metabolic process;1.29806538923094e-43!GO:0044267;cellular protein metabolic process;9.96565794276234e-43!GO:0006412;translation;1.58746574131798e-42!GO:0043283;biopolymer metabolic process;8.2492109259386e-42!GO:0033036;macromolecule localization;8.61208047725154e-42!GO:0015031;protein transport;1.02621327408384e-41!GO:0006396;RNA processing;1.19610472973709e-40!GO:0044429;mitochondrial part;2.65470762314037e-40!GO:0003735;structural constituent of ribosome;2.6699974401639e-40!GO:0031981;nuclear lumen;2.41937685683908e-39!GO:0008104;protein localization;8.83912414593136e-39!GO:0045184;establishment of protein localization;1.8853544417042e-38!GO:0031967;organelle envelope;2.52886046177435e-36!GO:0031975;envelope;4.32433152699697e-36!GO:0009058;biosynthetic process;5.14020835576353e-36!GO:0006996;organelle organization and biogenesis;1.57827960939248e-35!GO:0016071;mRNA metabolic process;1.01887352387681e-34!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.02098078889216e-34!GO:0005829;cytosol;1.06704965939634e-34!GO:0010467;gene expression;1.08936090323995e-34!GO:0043228;non-membrane-bound organelle;1.23124388365995e-34!GO:0043232;intracellular non-membrane-bound organelle;1.23124388365995e-34!GO:0033279;ribosomal subunit;1.65475344208394e-34!GO:0009059;macromolecule biosynthetic process;2.75730749924988e-34!GO:0046907;intracellular transport;6.29173303576385e-34!GO:0044249;cellular biosynthetic process;5.91014453303798e-33!GO:0008380;RNA splicing;5.1579810584625e-32!GO:0006397;mRNA processing;6.42083771643335e-30!GO:0065003;macromolecular complex assembly;2.46551679333017e-29!GO:0006886;intracellular protein transport;2.46343782505954e-27!GO:0022607;cellular component assembly;1.87120985102415e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.86707213315141e-26!GO:0005740;mitochondrial envelope;4.85391940415758e-26!GO:0006259;DNA metabolic process;7.22516196954892e-26!GO:0007049;cell cycle;1.07917779001835e-25!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.92994156705936e-25!GO:0005654;nucleoplasm;4.65068285321641e-25!GO:0031966;mitochondrial membrane;2.14661922984361e-24!GO:0019866;organelle inner membrane;4.90989041290112e-24!GO:0005681;spliceosome;7.365033628258e-23!GO:0051641;cellular localization;9.40912992510274e-23!GO:0051649;establishment of cellular localization;1.36793813863482e-22!GO:0000166;nucleotide binding;1.43482452712059e-22!GO:0005743;mitochondrial inner membrane;2.68762258439428e-22!GO:0044451;nucleoplasm part;5.28619684591552e-21!GO:0006119;oxidative phosphorylation;1.45933442998415e-20!GO:0016462;pyrophosphatase activity;2.21220725204928e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.45774828423689e-20!GO:0012505;endomembrane system;3.62933478662095e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;3.69772116439434e-20!GO:0022402;cell cycle process;3.92273612807062e-20!GO:0044445;cytosolic part;8.52691297434072e-20!GO:0017111;nucleoside-triphosphatase activity;1.15231847438058e-19!GO:0000278;mitotic cell cycle;2.93129179060361e-19!GO:0006457;protein folding;3.95662556867615e-19!GO:0005783;endoplasmic reticulum;3.96387049482075e-19!GO:0044455;mitochondrial membrane part;4.16678499195845e-19!GO:0015934;large ribosomal subunit;8.24621589567037e-19!GO:0003676;nucleic acid binding;9.26349404844093e-19!GO:0048770;pigment granule;1.7066607124076e-18!GO:0042470;melanosome;1.7066607124076e-18!GO:0031980;mitochondrial lumen;2.94569542673073e-17!GO:0005759;mitochondrial matrix;2.94569542673073e-17!GO:0005794;Golgi apparatus;3.65628150427514e-17!GO:0008134;transcription factor binding;5.01677122454671e-17!GO:0016874;ligase activity;7.04636983450572e-17!GO:0015935;small ribosomal subunit;9.85119022276756e-17!GO:0032553;ribonucleotide binding;1.07423051090577e-16!GO:0032555;purine ribonucleotide binding;1.07423051090577e-16!GO:0022618;protein-RNA complex assembly;2.39379614869107e-16!GO:0017076;purine nucleotide binding;2.48768125819827e-16!GO:0006512;ubiquitin cycle;3.13675240764405e-16!GO:0005746;mitochondrial respiratory chain;8.74568454081739e-16!GO:0044432;endoplasmic reticulum part;1.35340743558149e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.61363339172022e-15!GO:0005730;nucleolus;2.50729434069464e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;2.90657280017178e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.39216386438438e-15!GO:0019941;modification-dependent protein catabolic process;6.02430850707726e-15!GO:0043632;modification-dependent macromolecule catabolic process;6.02430850707726e-15!GO:0006511;ubiquitin-dependent protein catabolic process;7.34280312979412e-15!GO:0043285;biopolymer catabolic process;8.54435548195607e-15!GO:0051186;cofactor metabolic process;8.85116801767073e-15!GO:0016070;RNA metabolic process;9.43198841686275e-15!GO:0044257;cellular protein catabolic process;9.6587180728179e-15!GO:0044265;cellular macromolecule catabolic process;1.49118575516182e-14!GO:0005694;chromosome;1.95227375757698e-14!GO:0006605;protein targeting;1.98418099766823e-14!GO:0050136;NADH dehydrogenase (quinone) activity;3.73425252736303e-14!GO:0003954;NADH dehydrogenase activity;3.73425252736303e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.73425252736303e-14!GO:0022403;cell cycle phase;3.73628277810877e-14!GO:0051082;unfolded protein binding;4.58197147823201e-14!GO:0008135;translation factor activity, nucleic acid binding;5.35028344931056e-14!GO:0048193;Golgi vesicle transport;1.15002775833296e-13!GO:0000087;M phase of mitotic cell cycle;1.49353613299056e-13!GO:0005524;ATP binding;2.08329221253927e-13!GO:0007067;mitosis;2.66341465719368e-13!GO:0030163;protein catabolic process;2.71612284695855e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.99500636191801e-13!GO:0005761;mitochondrial ribosome;3.18242755954279e-13!GO:0000313;organellar ribosome;3.18242755954279e-13!GO:0043412;biopolymer modification;3.94234251655963e-13!GO:0051276;chromosome organization and biogenesis;4.17045691372378e-13!GO:0032559;adenyl ribonucleotide binding;4.25708801760674e-13!GO:0006974;response to DNA damage stimulus;4.70830315850563e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.3839915894444e-13!GO:0009057;macromolecule catabolic process;5.40170756673295e-13!GO:0044427;chromosomal part;7.55529376565858e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;1.08023310354213e-12!GO:0000375;RNA splicing, via transesterification reactions;1.08023310354213e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.08023310354213e-12!GO:0016192;vesicle-mediated transport;1.08487927787106e-12!GO:0051301;cell division;1.26587020354062e-12!GO:0030554;adenyl nucleotide binding;1.28073759953499e-12!GO:0044248;cellular catabolic process;1.77014598934289e-12!GO:0030964;NADH dehydrogenase complex (quinone);3.18620343852111e-12!GO:0045271;respiratory chain complex I;3.18620343852111e-12!GO:0005747;mitochondrial respiratory chain complex I;3.18620343852111e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.58219320687934e-12!GO:0042775;organelle ATP synthesis coupled electron transport;3.9560847130418e-12!GO:0042773;ATP synthesis coupled electron transport;3.9560847130418e-12!GO:0006464;protein modification process;7.94243238917538e-12!GO:0003712;transcription cofactor activity;8.4527581613076e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;9.94569558157977e-12!GO:0000074;regulation of progression through cell cycle;1.24766767039902e-11!GO:0012501;programmed cell death;1.24766767039902e-11!GO:0051726;regulation of cell cycle;1.25646727445144e-11!GO:0005793;ER-Golgi intermediate compartment;1.6037177439092e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;2.40757923622555e-11!GO:0006732;coenzyme metabolic process;2.67175538537809e-11!GO:0006915;apoptosis;3.68956116751068e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.31937476064382e-11!GO:0005635;nuclear envelope;4.99199286250259e-11!GO:0000279;M phase;8.31595814882152e-11!GO:0006323;DNA packaging;9.35521121762847e-11!GO:0003743;translation initiation factor activity;9.98703709566439e-11!GO:0042254;ribosome biogenesis and assembly;1.26403828074229e-10!GO:0005789;endoplasmic reticulum membrane;1.40648088605265e-10!GO:0008219;cell death;1.44042853355322e-10!GO:0016265;death;1.44042853355322e-10!GO:0048523;negative regulation of cellular process;1.50151431454202e-10!GO:0016604;nuclear body;1.65272020857675e-10!GO:0006913;nucleocytoplasmic transport;1.66167519303895e-10!GO:0043687;post-translational protein modification;2.31404630460156e-10!GO:0051169;nuclear transport;3.4704253129947e-10!GO:0008639;small protein conjugating enzyme activity;3.53964738312541e-10!GO:0006281;DNA repair;3.67933397872533e-10!GO:0006413;translational initiation;4.13562573827793e-10!GO:0031965;nuclear membrane;4.13562573827793e-10!GO:0015630;microtubule cytoskeleton;4.13562573827793e-10!GO:0044453;nuclear membrane part;4.25010346367295e-10!GO:0004842;ubiquitin-protein ligase activity;8.34570055006032e-10!GO:0042623;ATPase activity, coupled;8.68156260274385e-10!GO:0016887;ATPase activity;9.56631599103361e-10!GO:0019787;small conjugating protein ligase activity;1.03003397031622e-09!GO:0009055;electron carrier activity;1.0403098821204e-09!GO:0006260;DNA replication;1.04309681280548e-09!GO:0006446;regulation of translational initiation;1.08145464964251e-09!GO:0009719;response to endogenous stimulus;1.31581698639067e-09!GO:0009259;ribonucleotide metabolic process;2.12206012606896e-09!GO:0065004;protein-DNA complex assembly;2.14111561561837e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.30913231197635e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.9694294337725e-09!GO:0006333;chromatin assembly or disassembly;3.16535641942975e-09!GO:0008565;protein transporter activity;3.52074259039952e-09!GO:0006366;transcription from RNA polymerase II promoter;3.54786291307798e-09!GO:0006163;purine nucleotide metabolic process;4.41746021860617e-09!GO:0009150;purine ribonucleotide metabolic process;6.70314807751948e-09!GO:0050794;regulation of cellular process;6.74386871827281e-09!GO:0000785;chromatin;7.98694470992504e-09!GO:0048519;negative regulation of biological process;1.04879467458159e-08!GO:0009141;nucleoside triphosphate metabolic process;1.102114559607e-08!GO:0003924;GTPase activity;1.24812307632974e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.24825234577194e-08!GO:0016881;acid-amino acid ligase activity;1.71778035688431e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.89395354665265e-08!GO:0006164;purine nucleotide biosynthetic process;1.89818987547404e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.08040592355691e-08!GO:0009144;purine nucleoside triphosphate metabolic process;2.08040592355691e-08!GO:0017038;protein import;2.12871997785775e-08!GO:0009260;ribonucleotide biosynthetic process;2.14877702808184e-08!GO:0016607;nuclear speck;2.72710518495633e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.73478394593805e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.85347509477166e-08!GO:0004812;aminoacyl-tRNA ligase activity;2.85347509477166e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.85347509477166e-08!GO:0006888;ER to Golgi vesicle-mediated transport;3.74102540993139e-08!GO:0009060;aerobic respiration;5.24367810197079e-08!GO:0030120;vesicle coat;5.32790239800492e-08!GO:0030662;coated vesicle membrane;5.32790239800492e-08!GO:0043038;amino acid activation;5.80618864451246e-08!GO:0006418;tRNA aminoacylation for protein translation;5.80618864451246e-08!GO:0043039;tRNA aminoacylation;5.80618864451246e-08!GO:0005643;nuclear pore;6.59385790528836e-08!GO:0015986;ATP synthesis coupled proton transport;7.42103499990958e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.42103499990958e-08!GO:0004386;helicase activity;7.970980975136e-08!GO:0006334;nucleosome assembly;8.7249004500172e-08!GO:0044431;Golgi apparatus part;8.87042932717185e-08!GO:0006399;tRNA metabolic process;9.38021335771557e-08!GO:0009142;nucleoside triphosphate biosynthetic process;9.41172711310903e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.41172711310903e-08!GO:0031324;negative regulation of cellular metabolic process;9.76158004211715e-08!GO:0005768;endosome;1.29788702905893e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.31394110206543e-07!GO:0046034;ATP metabolic process;1.36204003753179e-07!GO:0045333;cellular respiration;1.48756126735627e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.57382425338222e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.57382425338222e-07!GO:0006461;protein complex assembly;1.75488941701698e-07!GO:0019829;cation-transporting ATPase activity;1.82781138490397e-07!GO:0048475;coated membrane;1.84618756725495e-07!GO:0030117;membrane coat;1.84618756725495e-07!GO:0031497;chromatin assembly;1.93498155259532e-07!GO:0065002;intracellular protein transport across a membrane;2.09091400109793e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.15448273528695e-07!GO:0005788;endoplasmic reticulum lumen;2.52206595892211e-07!GO:0009056;catabolic process;2.97006937895487e-07!GO:0051188;cofactor biosynthetic process;3.60614221596502e-07!GO:0030532;small nuclear ribonucleoprotein complex;3.78484807746041e-07!GO:0008026;ATP-dependent helicase activity;4.16363103945272e-07!GO:0046930;pore complex;4.8738909295915e-07!GO:0045786;negative regulation of progression through cell cycle;5.06865789830523e-07!GO:0003697;single-stranded DNA binding;5.21164229702664e-07!GO:0051246;regulation of protein metabolic process;5.42862365861811e-07!GO:0043067;regulation of programmed cell death;6.35859229184302e-07!GO:0051187;cofactor catabolic process;6.45434276861189e-07!GO:0043566;structure-specific DNA binding;7.26249411934758e-07!GO:0042981;regulation of apoptosis;7.38958054172961e-07!GO:0016469;proton-transporting two-sector ATPase complex;7.46622098709209e-07!GO:0006099;tricarboxylic acid cycle;7.48662538749395e-07!GO:0046356;acetyl-CoA catabolic process;7.48662538749395e-07!GO:0006754;ATP biosynthetic process;9.4137608765019e-07!GO:0006753;nucleoside phosphate metabolic process;9.4137608765019e-07!GO:0006364;rRNA processing;1.01575371061194e-06!GO:0005667;transcription factor complex;1.25871040314135e-06!GO:0005813;centrosome;1.26472259710393e-06!GO:0006793;phosphorus metabolic process;1.42662288894386e-06!GO:0006796;phosphate metabolic process;1.42662288894386e-06!GO:0031252;leading edge;1.42662288894386e-06!GO:0016049;cell growth;1.42662288894386e-06!GO:0005819;spindle;1.44247336482094e-06!GO:0008361;regulation of cell size;1.4491598358996e-06!GO:0009109;coenzyme catabolic process;1.64952409128049e-06!GO:0051329;interphase of mitotic cell cycle;1.70239482280156e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.70239482280156e-06!GO:0006084;acetyl-CoA metabolic process;1.91357354011498e-06!GO:0009892;negative regulation of metabolic process;2.00197340142101e-06!GO:0007005;mitochondrion organization and biogenesis;2.00321908899253e-06!GO:0000151;ubiquitin ligase complex;2.00378321211108e-06!GO:0016072;rRNA metabolic process;2.18448564513779e-06!GO:0016564;transcription repressor activity;2.28637678958185e-06!GO:0000245;spliceosome assembly;2.30658864634966e-06!GO:0032446;protein modification by small protein conjugation;2.40752814238858e-06!GO:0003714;transcription corepressor activity;2.4854333240415e-06!GO:0007010;cytoskeleton organization and biogenesis;2.76290647831549e-06!GO:0006403;RNA localization;2.80368863174603e-06!GO:0005815;microtubule organizing center;2.82480724257304e-06!GO:0009117;nucleotide metabolic process;2.89086721751998e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.14572352117334e-06!GO:0050657;nucleic acid transport;3.41089594349611e-06!GO:0051236;establishment of RNA localization;3.41089594349611e-06!GO:0050658;RNA transport;3.41089594349611e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.7840826716009e-06!GO:0016568;chromatin modification;4.11270948511308e-06!GO:0016491;oxidoreductase activity;4.15955683019507e-06!GO:0005525;GTP binding;4.31086181994681e-06!GO:0051170;nuclear import;4.41323434941548e-06!GO:0016567;protein ubiquitination;4.42328946711989e-06!GO:0006606;protein import into nucleus;4.68290724850311e-06!GO:0050789;regulation of biological process;4.82632242315918e-06!GO:0045259;proton-transporting ATP synthase complex;4.97095017686331e-06!GO:0016023;cytoplasmic membrane-bound vesicle;4.98674319260867e-06!GO:0016310;phosphorylation;5.44235631249507e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.4871820785065e-06!GO:0031988;membrane-bound vesicle;5.58623922830936e-06!GO:0000139;Golgi membrane;6.29231833418435e-06!GO:0051325;interphase;6.59703670178376e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;7.4401360885461e-06!GO:0016481;negative regulation of transcription;7.85508879206178e-06!GO:0006752;group transfer coenzyme metabolic process;8.52044725824858e-06!GO:0005798;Golgi-associated vesicle;8.7477216174846e-06!GO:0016740;transferase activity;1.14344904329687e-05!GO:0001558;regulation of cell growth;1.14593965352996e-05!GO:0004298;threonine endopeptidase activity;1.14696743651953e-05!GO:0006916;anti-apoptosis;1.16761918764725e-05!GO:0016787;hydrolase activity;1.19771529807958e-05!GO:0006613;cotranslational protein targeting to membrane;1.1988310504689e-05!GO:0009108;coenzyme biosynthetic process;1.26964098000523e-05!GO:0003713;transcription coactivator activity;1.36773553444093e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.39814461768846e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.45600521284456e-05!GO:0043069;negative regulation of programmed cell death;1.56474361428838e-05!GO:0007051;spindle organization and biogenesis;1.61043399684151e-05!GO:0031982;vesicle;1.6915013370513e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.78173750367996e-05!GO:0031410;cytoplasmic vesicle;1.83039093816022e-05!GO:0005762;mitochondrial large ribosomal subunit;1.84592904682717e-05!GO:0000315;organellar large ribosomal subunit;1.84592904682717e-05!GO:0048522;positive regulation of cellular process;2.16197101187592e-05!GO:0032561;guanyl ribonucleotide binding;2.60799028976735e-05!GO:0019001;guanyl nucleotide binding;2.60799028976735e-05!GO:0051789;response to protein stimulus;2.7650603246732e-05!GO:0006986;response to unfolded protein;2.7650603246732e-05!GO:0043066;negative regulation of apoptosis;3.06773401028495e-05!GO:0045454;cell redox homeostasis;3.09101557792157e-05!GO:0008092;cytoskeletal protein binding;3.99166604585524e-05!GO:0005773;vacuole;4.12058571216768e-05!GO:0030867;rough endoplasmic reticulum membrane;4.1404895210254e-05!GO:0015980;energy derivation by oxidation of organic compounds;5.35866239605138e-05!GO:0044440;endosomal part;5.70424301800712e-05!GO:0010008;endosome membrane;5.70424301800712e-05!GO:0005770;late endosome;6.1633385367371e-05!GO:0016563;transcription activator activity;6.18876499179175e-05!GO:0051028;mRNA transport;7.43666532719759e-05!GO:0016779;nucleotidyltransferase activity;7.54282686454673e-05!GO:0030133;transport vesicle;7.54282686454673e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;7.72715312820772e-05!GO:0003724;RNA helicase activity;7.76983627415511e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;8.37659098300845e-05!GO:0016853;isomerase activity;9.02673571120838e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;9.78467973789495e-05!GO:0043021;ribonucleoprotein binding;0.000102579970478953!GO:0000075;cell cycle checkpoint;0.000110083449018448!GO:0051427;hormone receptor binding;0.000114189962391504!GO:0006091;generation of precursor metabolites and energy;0.000120277262462667!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000133210294439349!GO:0000775;chromosome, pericentric region;0.000135716765046002!GO:0016859;cis-trans isomerase activity;0.000135996624768495!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000138656380379146!GO:0030029;actin filament-based process;0.000147079161481076!GO:0043623;cellular protein complex assembly;0.000150530365221484!GO:0019899;enzyme binding;0.000159572613193887!GO:0008654;phospholipid biosynthetic process;0.000160397983264071!GO:0005905;coated pit;0.000180078871995195!GO:0006612;protein targeting to membrane;0.000201843363113608!GO:0000323;lytic vacuole;0.000208914696188048!GO:0005764;lysosome;0.000208914696188048!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000222160284701178!GO:0035257;nuclear hormone receptor binding;0.00023494730092061!GO:0005048;signal sequence binding;0.000239793236203439!GO:0006261;DNA-dependent DNA replication;0.000243914479489615!GO:0005885;Arp2/3 protein complex;0.000251747198635537!GO:0005874;microtubule;0.000270370159686764!GO:0031968;organelle outer membrane;0.000305465728097539!GO:0005769;early endosome;0.000317534917961193!GO:0019867;outer membrane;0.000352693843527437!GO:0051252;regulation of RNA metabolic process;0.000354610583067982!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000374548149291442!GO:0008250;oligosaccharyl transferase complex;0.000399742466252456!GO:0005791;rough endoplasmic reticulum;0.000441413325313288!GO:0030663;COPI coated vesicle membrane;0.00047338521784182!GO:0030126;COPI vesicle coat;0.00047338521784182!GO:0033116;ER-Golgi intermediate compartment membrane;0.000482163885447192!GO:0007050;cell cycle arrest;0.000515452432787513!GO:0019222;regulation of metabolic process;0.000522751440273008!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000595401475170132!GO:0000082;G1/S transition of mitotic cell cycle;0.000595940254649812!GO:0000786;nucleosome;0.00062911017571823!GO:0000314;organellar small ribosomal subunit;0.000646343314273448!GO:0005763;mitochondrial small ribosomal subunit;0.000646343314273448!GO:0003899;DNA-directed RNA polymerase activity;0.00070450986093543!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000709335952184878!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000748379250768885!GO:0051168;nuclear export;0.000752736818800474!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000820363791537073!GO:0004576;oligosaccharyl transferase activity;0.000849587461710618!GO:0030137;COPI-coated vesicle;0.000895477733902376!GO:0000059;protein import into nucleus, docking;0.000984442293908361!GO:0007243;protein kinase cascade;0.00102602161911732!GO:0005741;mitochondrial outer membrane;0.00102859114585859!GO:0018196;peptidyl-asparagine modification;0.00103450710764286!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00103450710764286!GO:0040008;regulation of growth;0.00107561660665853!GO:0045892;negative regulation of transcription, DNA-dependent;0.00108727116118146!GO:0031072;heat shock protein binding;0.00111448577967871!GO:0048471;perinuclear region of cytoplasm;0.00112457187849385!GO:0051920;peroxiredoxin activity;0.00127340498409327!GO:0030027;lamellipodium;0.00132932862368818!GO:0003682;chromatin binding;0.00135464163279968!GO:0003690;double-stranded DNA binding;0.00143300180016558!GO:0006839;mitochondrial transport;0.00156281700260293!GO:0043284;biopolymer biosynthetic process;0.00159491260538194!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0016273453740417!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00175919679206599!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00175919679206599!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00175919679206599!GO:0048518;positive regulation of biological process;0.00179728781852311!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00180526241587992!GO:0015399;primary active transmembrane transporter activity;0.00180526241587992!GO:0003729;mRNA binding;0.00186840268172578!GO:0008186;RNA-dependent ATPase activity;0.00187228706422649!GO:0015631;tubulin binding;0.00187228706422649!GO:0030132;clathrin coat of coated pit;0.00187616942210531!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00190448004985006!GO:0043488;regulation of mRNA stability;0.00198446207046527!GO:0043487;regulation of RNA stability;0.00198446207046527!GO:0000776;kinetochore;0.00199365783097017!GO:0009165;nucleotide biosynthetic process;0.00207527525389811!GO:0016126;sterol biosynthetic process;0.00213003533073757!GO:0019843;rRNA binding;0.00219026172128282!GO:0007052;mitotic spindle organization and biogenesis;0.00230281438813717!GO:0030658;transport vesicle membrane;0.00260726026602322!GO:0042802;identical protein binding;0.0026462341069023!GO:0016363;nuclear matrix;0.00269776989843052!GO:0016044;membrane organization and biogenesis;0.00277471250946823!GO:0043681;protein import into mitochondrion;0.00287003211078716!GO:0048468;cell development;0.00288792422461267!GO:0048500;signal recognition particle;0.00294315029973993!GO:0005657;replication fork;0.00310208422393124!GO:0030134;ER to Golgi transport vesicle;0.00320428834376756!GO:0015992;proton transport;0.00320428834376756!GO:0006891;intra-Golgi vesicle-mediated transport;0.00326549857057592!GO:0065009;regulation of a molecular function;0.00333194853688937!GO:0044262;cellular carbohydrate metabolic process;0.00334033598677461!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00339138333012256!GO:0046483;heterocycle metabolic process;0.00362503495462363!GO:0030118;clathrin coat;0.00369051729388329!GO:0006402;mRNA catabolic process;0.0037211236833895!GO:0017166;vinculin binding;0.00380825229153028!GO:0008094;DNA-dependent ATPase activity;0.00380825229153028!GO:0007088;regulation of mitosis;0.00380825229153028!GO:0006818;hydrogen transport;0.00390217937291721!GO:0007264;small GTPase mediated signal transduction;0.003908047682667!GO:0030127;COPII vesicle coat;0.00391406545465212!GO:0012507;ER to Golgi transport vesicle membrane;0.00391406545465212!GO:0007093;mitotic cell cycle checkpoint;0.00393944455976287!GO:0008047;enzyme activator activity;0.00399118678842425!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00408939239299295!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00409452108497666!GO:0006383;transcription from RNA polymerase III promoter;0.00416027035913564!GO:0065007;biological regulation;0.00418061869695713!GO:0000910;cytokinesis;0.00431952997967229!GO:0006414;translational elongation;0.00435311438998971!GO:0046474;glycerophospholipid biosynthetic process;0.00437871009534841!GO:0006626;protein targeting to mitochondrion;0.00459415157307797!GO:0004004;ATP-dependent RNA helicase activity;0.00471216752279069!GO:0030521;androgen receptor signaling pathway;0.00546679672395083!GO:0008139;nuclear localization sequence binding;0.00560317481014212!GO:0030880;RNA polymerase complex;0.0058154551638378!GO:0006302;double-strand break repair;0.00593811281381598!GO:0003779;actin binding;0.0060349865265564!GO:0008180;signalosome;0.00612428046582669!GO:0030145;manganese ion binding;0.00620011235363717!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00644963491736524!GO:0051128;regulation of cellular component organization and biogenesis;0.00650740230158079!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00669490023983155!GO:0045047;protein targeting to ER;0.00669490023983155!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0067179755104347!GO:0022890;inorganic cation transmembrane transporter activity;0.00680235206415583!GO:0006352;transcription initiation;0.0069283679665657!GO:0003684;damaged DNA binding;0.0069283679665657!GO:0001726;ruffle;0.00703023722305992!GO:0030660;Golgi-associated vesicle membrane;0.00713633082458998!GO:0045941;positive regulation of transcription;0.00720103185420565!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00720103185420565!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00720103185420565!GO:0003746;translation elongation factor activity;0.00720103185420565!GO:0006595;polyamine metabolic process;0.00733020491845361!GO:0051052;regulation of DNA metabolic process;0.00767804916974977!GO:0030659;cytoplasmic vesicle membrane;0.00777848309427635!GO:0048487;beta-tubulin binding;0.00779885484752398!GO:0045893;positive regulation of transcription, DNA-dependent;0.00782887425355208!GO:0006401;RNA catabolic process;0.00793899795464184!GO:0030176;integral to endoplasmic reticulum membrane;0.00794638627762825!GO:0051087;chaperone binding;0.0079474158144423!GO:0005869;dynactin complex;0.00804622398563768!GO:0004674;protein serine/threonine kinase activity;0.00807297032761766!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00816347928795761!GO:0043492;ATPase activity, coupled to movement of substances;0.00819438359001578!GO:0005684;U2-dependent spliceosome;0.00819438359001578!GO:0035258;steroid hormone receptor binding;0.00833084549556424!GO:0019752;carboxylic acid metabolic process;0.00833912814574454!GO:0016197;endosome transport;0.00863411129411781!GO:0007017;microtubule-based process;0.008653651930898!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.008653651930898!GO:0015002;heme-copper terminal oxidase activity;0.008653651930898!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.008653651930898!GO:0004129;cytochrome-c oxidase activity;0.008653651930898!GO:0009967;positive regulation of signal transduction;0.00867224124676137!GO:0008312;7S RNA binding;0.00883713821275753!GO:0045045;secretory pathway;0.00883713821275753!GO:0051287;NAD binding;0.00894384032693677!GO:0031124;mRNA 3'-end processing;0.00895905950741331!GO:0006082;organic acid metabolic process;0.00927856330374225!GO:0008287;protein serine/threonine phosphatase complex;0.00928705958488317!GO:0005862;muscle thin filament tropomyosin;0.00952440697541912!GO:0003678;DNA helicase activity;0.00952440697541912!GO:0007006;mitochondrial membrane organization and biogenesis;0.00952514392783855!GO:0008632;apoptotic program;0.00963065307737266!GO:0006695;cholesterol biosynthetic process;0.00969911092444335!GO:0006310;DNA recombination;0.0102818984911545!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0103450266404269!GO:0046467;membrane lipid biosynthetic process;0.0103837294913196!GO:0004177;aminopeptidase activity;0.0106791020968859!GO:0003711;transcription elongation regulator activity;0.0106984804857235!GO:0006979;response to oxidative stress;0.0110396366033239!GO:0005096;GTPase activator activity;0.0113837117583452!GO:0031529;ruffle organization and biogenesis;0.0116989853641593!GO:0005637;nuclear inner membrane;0.0117322802068937!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0119848610782166!GO:0000428;DNA-directed RNA polymerase complex;0.0119848610782166!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0123180673394351!GO:0032508;DNA duplex unwinding;0.0123810752676278!GO:0032392;DNA geometric change;0.0123810752676278!GO:0043065;positive regulation of apoptosis;0.0124250994982114!GO:0045936;negative regulation of phosphate metabolic process;0.0131904435930091!GO:0043068;positive regulation of programmed cell death;0.0133824082137114!GO:0044433;cytoplasmic vesicle part;0.0134002131340992!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0134209398172333!GO:0043624;cellular protein complex disassembly;0.0136368664380892!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0137351431678286!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0138543706719061!GO:0000049;tRNA binding;0.0140961865038424!GO:0032984;macromolecular complex disassembly;0.0141032826089473!GO:0007346;regulation of progression through mitotic cell cycle;0.0141234502527469!GO:0030032;lamellipodium biogenesis;0.0146294648003188!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0147198051138662!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0148095394072086!GO:0006650;glycerophospholipid metabolic process;0.0148247731378584!GO:0008610;lipid biosynthetic process;0.0151147028167233!GO:0006268;DNA unwinding during replication;0.0157667982173294!GO:0044452;nucleolar part;0.0160385354048159!GO:0006778;porphyrin metabolic process;0.0160925605316084!GO:0033013;tetrapyrrole metabolic process;0.0160925605316084!GO:0006611;protein export from nucleus;0.0161504262188987!GO:0006509;membrane protein ectodomain proteolysis;0.0166210627228916!GO:0033619;membrane protein proteolysis;0.0166210627228916!GO:0016584;nucleosome positioning;0.0166210627228916!GO:0046489;phosphoinositide biosynthetic process;0.0166797928739558!GO:0005876;spindle microtubule;0.0168470050516393!GO:0008154;actin polymerization and/or depolymerization;0.0168473030346758!GO:0050681;androgen receptor binding;0.0172203183126582!GO:0043022;ribosome binding;0.017248322122902!GO:0008286;insulin receptor signaling pathway;0.017248322122902!GO:0030119;AP-type membrane coat adaptor complex;0.018076283791972!GO:0019206;nucleoside kinase activity;0.0185458597204577!GO:0031625;ubiquitin protein ligase binding;0.0185458597204577!GO:0006607;NLS-bearing substrate import into nucleus;0.0185458597204577!GO:0031323;regulation of cellular metabolic process;0.0189286879506393!GO:0000339;RNA cap binding;0.0191237817977087!GO:0004722;protein serine/threonine phosphatase activity;0.019297756496264!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0196148010453513!GO:0005832;chaperonin-containing T-complex;0.0197358842663939!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0199069932201659!GO:0008022;protein C-terminus binding;0.0200220891306169!GO:0006220;pyrimidine nucleotide metabolic process;0.0202190630307316!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0202466394157056!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0202466394157056!GO:0016408;C-acyltransferase activity;0.0206940750246678!GO:0006740;NADPH regeneration;0.0213288619682608!GO:0006098;pentose-phosphate shunt;0.0213288619682608!GO:0000922;spindle pole;0.0216033384235722!GO:0008168;methyltransferase activity;0.0219445747919605!GO:0000287;magnesium ion binding;0.0219445747919605!GO:0031901;early endosome membrane;0.0220844992870086!GO:0016741;transferase activity, transferring one-carbon groups;0.0232976875675675!GO:0022408;negative regulation of cell-cell adhesion;0.0235725569273989!GO:0006354;RNA elongation;0.0242750116374698!GO:0007021;tubulin folding;0.0244029802194742!GO:0030518;steroid hormone receptor signaling pathway;0.0245103996044913!GO:0030125;clathrin vesicle coat;0.0245834610451995!GO:0030665;clathrin coated vesicle membrane;0.0245834610451995!GO:0030833;regulation of actin filament polymerization;0.0248461405801045!GO:0043241;protein complex disassembly;0.0248495638910069!GO:0035035;histone acetyltransferase binding;0.0250979076376396!GO:0019798;procollagen-proline dioxygenase activity;0.0250979076376396!GO:0006520;amino acid metabolic process;0.0251980867489442!GO:0016272;prefoldin complex;0.0255000149412105!GO:0006338;chromatin remodeling;0.0255077954561454!GO:0030041;actin filament polymerization;0.0255579232267665!GO:0012506;vesicle membrane;0.0255579232267665!GO:0042326;negative regulation of phosphorylation;0.0262796628917303!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0265212428454652!GO:0001952;regulation of cell-matrix adhesion;0.0266155304498145!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0267054365309863!GO:0033043;regulation of organelle organization and biogenesis;0.0267054365309863!GO:0045792;negative regulation of cell size;0.0270806518617258!GO:0000792;heterochromatin;0.0276299297634816!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0278749134995818!GO:0008601;protein phosphatase type 2A regulator activity;0.0279414212250081!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0288940711915854!GO:0046426;negative regulation of JAK-STAT cascade;0.0298451778758138!GO:0030131;clathrin adaptor complex;0.0300332268429431!GO:0005669;transcription factor TFIID complex;0.0301756982350754!GO:0018193;peptidyl-amino acid modification;0.0301756982350754!GO:0007059;chromosome segregation;0.0302428173728842!GO:0033559;unsaturated fatty acid metabolic process;0.0302428173728842!GO:0006636;unsaturated fatty acid biosynthetic process;0.0302428173728842!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0303685652902539!GO:0051101;regulation of DNA binding;0.0305356399973343!GO:0006892;post-Golgi vesicle-mediated transport;0.0305356399973343!GO:0031543;peptidyl-proline dioxygenase activity;0.0305356399973343!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0306289258029343!GO:0046519;sphingoid metabolic process;0.0311381070329243!GO:0030308;negative regulation of cell growth;0.0312159221673475!GO:0030508;thiol-disulfide exchange intermediate activity;0.0313077716514127!GO:0007034;vacuolar transport;0.0314832700404326!GO:0007040;lysosome organization and biogenesis;0.0317324190931827!GO:0050662;coenzyme binding;0.0318271716071189!GO:0005581;collagen;0.0320595331943641!GO:0016251;general RNA polymerase II transcription factor activity;0.0322634271868991!GO:0031902;late endosome membrane;0.0324302565871026!GO:0001953;negative regulation of cell-matrix adhesion;0.0326488599878219!GO:0006497;protein amino acid lipidation;0.0327202608901953!GO:0031371;ubiquitin conjugating enzyme complex;0.0327568583623055!GO:0004527;exonuclease activity;0.0328056588049909!GO:0008629;induction of apoptosis by intracellular signals;0.032870628048396!GO:0007030;Golgi organization and biogenesis;0.033006571669728!GO:0006984;ER-nuclear signaling pathway;0.0331455265873224!GO:0033673;negative regulation of kinase activity;0.0338442866276458!GO:0006469;negative regulation of protein kinase activity;0.0338442866276458!GO:0042168;heme metabolic process;0.0338792207554064!GO:0005938;cell cortex;0.0338792207554064!GO:0005801;cis-Golgi network;0.0339329757252893!GO:0043433;negative regulation of transcription factor activity;0.0342246238558317!GO:0000159;protein phosphatase type 2A complex;0.0343316092561638!GO:0033239;negative regulation of amine metabolic process;0.0343316092561638!GO:0045763;negative regulation of amino acid metabolic process;0.0343316092561638!GO:0001933;negative regulation of protein amino acid phosphorylation;0.0343316092561638!GO:0032906;transforming growth factor-beta2 production;0.0345505289239572!GO:0032909;regulation of transforming growth factor-beta2 production;0.0345505289239572!GO:0000209;protein polyubiquitination;0.0348057260679003!GO:0050790;regulation of catalytic activity;0.0349010515711965!GO:0031123;RNA 3'-end processing;0.0353560568616711!GO:0042585;germinal vesicle;0.0356340853716419!GO:0006376;mRNA splice site selection;0.0357502307180083!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0357502307180083!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0359508469608166!GO:0006289;nucleotide-excision repair;0.0361265416777693!GO:0006672;ceramide metabolic process;0.0362665152158579!GO:0051098;regulation of binding;0.0381843140556582!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0383855064792905!GO:0005784;translocon complex;0.0388054264699652!GO:0030911;TPR domain binding;0.0392432077473263!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0400752427556701!GO:0000118;histone deacetylase complex;0.0404666527353117!GO:0007033;vacuole organization and biogenesis;0.0409631777219172!GO:0007569;cell aging;0.0409631777219172!GO:0005583;fibrillar collagen;0.0410556886875909!GO:0035267;NuA4 histone acetyltransferase complex;0.0415935680256406!GO:0006897;endocytosis;0.041730783838601!GO:0010324;membrane invagination;0.041730783838601!GO:0003756;protein disulfide isomerase activity;0.04322346648076!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.04322346648076!GO:0006275;regulation of DNA replication;0.0437145573640749!GO:0048144;fibroblast proliferation;0.0440829666590478!GO:0048145;regulation of fibroblast proliferation;0.0440829666590478!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0441601609077595!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0446875949012605!GO:0006779;porphyrin biosynthetic process;0.0449399028162803!GO:0033014;tetrapyrrole biosynthetic process;0.0449399028162803!GO:0007160;cell-matrix adhesion;0.0449987373644604!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0449987373644604!GO:0031418;L-ascorbic acid binding;0.0449987373644604!GO:0008538;proteasome activator activity;0.045097273287362!GO:0031589;cell-substrate adhesion;0.0452763700218598!GO:0006350;transcription;0.0457502104014334!GO:0004003;ATP-dependent DNA helicase activity;0.0457962585885831!GO:0005520;insulin-like growth factor binding;0.0462307050607037!GO:0051348;negative regulation of transferase activity;0.046908123705831!GO:0006405;RNA export from nucleus;0.0471141441847807!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0471141441847807!GO:0048146;positive regulation of fibroblast proliferation;0.0472712174261879!GO:0043550;regulation of lipid kinase activity;0.0472712174261879!GO:0006790;sulfur metabolic process;0.0481542779309319!GO:0006739;NADP metabolic process;0.0485595262192696!GO:0043189;H4/H2A histone acetyltransferase complex;0.0488122026351069!GO:0042770;DNA damage response, signal transduction;0.0498727519145842
|sample_id=11223
|sample_note=Originally library704 tailing failed, these samples are now being remade in Automation6
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=periodontal ligament
|top_motifs=PDX1:1.533313029;TAL1_TCF{3,4,12}:1.38356625144;PPARG:1.31470001318;NR3C1:1.18310624447;TFAP4:1.17585445476;ZNF238:1.12973292315;GFI1:1.09724675028;TFDP1:1.06949365967;GZF1:1.00086660726;MYBL2:0.973176801433;TFCP2:0.972194719703;NKX3-1:0.953016560088;ZIC1..3:0.948891272274;PAX1,9:0.917776764578;EBF1:0.907973333242;TEAD1:0.90695878266;PAX8:0.875166507646;GLI1..3:0.826628163716;RXR{A,B,G}:0.818502214549;ESR1:0.804928869515;MAZ:0.777822333297;ALX4:0.741848472703;SOX17:0.737207105506;HMGA1,2:0.732633734192;SRF:0.730020295435;CDC5L:0.693435057697;NFATC1..3:0.6913249981;HES1:0.686215891702;TLX1..3_NFIC{dimer}:0.663848717184;NANOG{mouse}:0.649437484418;GTF2A1,2:0.635313370871;TP53:0.629166970465;GATA4:0.619950116257;HAND1,2:0.61965402632;TBX4,5:0.618315531371;MZF1:0.596005698432;GTF2I:0.589411037947;NKX2-3_NKX2-5:0.560094069903;MTE{core}:0.548159790956;FOXL1:0.530007397089;KLF4:0.524342226678;NKX2-2,8:0.517385357656;LHX3,4:0.509841765161;HOX{A5,B5}:0.508416876957;MYB:0.496478772752;GCM1,2:0.491021431603;SPZ1:0.488300688725;PATZ1:0.468050227733;UFEwm:0.466896221914;EVI1:0.46389480074;MAFB:0.454624034161;NFE2L2:0.434978329754;PRDM1:0.427702307835;ADNP_IRX_SIX_ZHX:0.420632083563;TFAP2B:0.409622343853;GFI1B:0.407113636369;XBP1:0.406054654895;NFIX:0.390512090007;FOXA2:0.387228965654;HBP1_HMGB_SSRP1_UBTF:0.384100289697;XCPE1{core}:0.378326321592;ZNF423:0.367120017865;MTF1:0.366712080872;TFAP2{A,C}:0.362533133446;NKX6-1,2:0.357111872643;SMAD1..7,9:0.34467663419;POU3F1..4:0.339589429278;EGR1..3:0.334371301157;EN1,2:0.316824707752;POU5F1:0.308480262326;HIC1:0.287458291364;POU1F1:0.271701619931;ZBTB6:0.268419814816;NKX3-2:0.254815159138;E2F1..5:0.239326912239;SOX5:0.229257908355;ZNF148:0.210990713273;LEF1_TCF7_TCF7L1,2:0.210614627612;BACH2:0.202952257696;ARID5B:0.188613396812;RREB1:0.186967167634;ZFP161:0.17874289668;NFE2L1:0.177007385336;T:0.175737592408;TOPORS:0.172007629849;AHR_ARNT_ARNT2:0.165177101621;HMX1:0.153220093686;SP1:0.148449569124;JUN:0.14621738637;NHLH1,2:0.138784427334;PAX4:0.0954184066512;PAX3,7:0.0901917850792;IRF1,2:0.0810654804638;FOS_FOS{B,L1}_JUN{B,D}:0.0632424088709;MEF2{A,B,C,D}:0.0631349596664;NR1H4:0.0570050646324;HLF:0.0551035360814;PRRX1,2:0.0332526047311;MED-1{core}:0.0309848001668;PAX5:0.0118745748314;NFY{A,B,C}:0.00940242546729;MYFfamily:0.00702788727009;FOXO1,3,4:0.00682865547053;POU6F1:-0.00073601216059;FOSL2:-0.0137543354676;RXRA_VDR{dimer}:-0.0156129029771;RUNX1..3:-0.0285714693213;NFE2:-0.0444697290066;ATF6:-0.0493830682647;HNF1A:-0.0750183998347;HOX{A4,D4}:-0.0779160718314;TBP:-0.101117692283;CREB1:-0.10865302686;YY1:-0.120940668656;NFIL3:-0.122344059436;DMAP1_NCOR{1,2}_SMARC:-0.137021458727;CEBPA,B_DDIT3:-0.138907851376;NR5A1,2:-0.140239213641;DBP:-0.148557781376;FOXD3:-0.151628332447;IKZF1:-0.154648081102;ONECUT1,2:-0.161629486649;NRF1:-0.175176685143;AIRE:-0.183039875062;STAT2,4,6:-0.194138428608;ZNF143:-0.211222178959;TGIF1:-0.232722241933;HOX{A6,A7,B6,B7}:-0.257540505719;NR6A1:-0.267808146277;ELK1,4_GABP{A,B1}:-0.279537990273;STAT5{A,B}:-0.282250825576;RFX1:-0.306411231195;SOX{8,9,10}:-0.308296214806;ZNF384:-0.311509588571;CRX:-0.316181741667;POU2F1..3:-0.320201766314;FOX{F1,F2,J1}:-0.345898926959;SPIB:-0.349329714625;HNF4A_NR2F1,2:-0.352853237807;AR:-0.358238750178;SOX2:-0.362695415337;CUX2:-0.366812970917;HSF1,2:-0.368950796056;BREu{core}:-0.36960842474;NKX2-1,4:-0.371120447643;SREBF1,2:-0.378955454157;GATA6:-0.406628136449;NFKB1_REL_RELA:-0.407055404715;IRF7:-0.415054030864;bHLH_family:-0.417639011963;ELF1,2,4:-0.419550012174;OCT4_SOX2{dimer}:-0.420989851368;REST:-0.423022650304;PITX1..3:-0.436281682941;FOXM1:-0.456100029315;ETS1,2:-0.457866728739;EP300:-0.476866033354;FOX{I1,J2}:-0.488656257879;NANOG:-0.501419050041;RBPJ:-0.517739719163;SPI1:-0.525648596065;VSX1,2:-0.531900998368;ATF5_CREB3:-0.544451140301;RORA:-0.551833612772;RFX2..5_RFXANK_RFXAP:-0.576370241978;FOX{D1,D2}:-0.576510528373;ESRRA:-0.577332439336;ALX1:-0.587115817403;PAX6:-0.606631671066;PBX1:-0.619535456302;IKZF2:-0.641218308761;FOXN1:-0.647734655253;FOXP1:-0.651134588808;PAX2:-0.726444524397;BPTF:-0.765919661361;FOXQ1:-0.806520029535;LMO2:-0.81682660555;STAT1,3:-0.823327120951;ATF4:-0.833613859373;SNAI1..3:-0.859249797235;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.870292502479;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.954073312245;HOXA9_MEIS1:-0.96761014699;ZEB1:-0.999540650662;ATF2:-1.01917339298;MYOD1:-1.05707992217;ZBTB16:-1.07122229716;TLX2:-1.0957319341;HIF1A:-1.10291775536;CDX1,2,4:-1.13509549984;TEF:-1.23827556732;FOXP3:-1.38407570635
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11223-116B8;search_select_hide=table117:FF:11223-116B8
}}
}}

Latest revision as of 16:25, 3 June 2020

Name:Fibroblast - Periodontal Ligament, donor4 (PL29)
Species:Human (Homo sapiens)
Library ID:CNhs12493
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueperiodontal ligament
dev stage18 years old adult
sexfemale
age18
cell typefibroblast
cell lineNA
companyN/A
collaborationMitsuhiro Ohshima (Nihon University School of Dentistry)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004778
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12493 CAGE DRX008277 DRR009149
Accession ID Hg19

Library idBAMCTSS
CNhs12493 DRZ000574 DRZ001959
Accession ID Hg38

Library idBAMCTSS
CNhs12493 DRZ011924 DRZ013309
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.124
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.227
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.44
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.158
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.111
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.294
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.274
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0361
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0427
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.191
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.207
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.158
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.158
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.158
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.158
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.51
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.365
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12493

Jaspar motifP-value
MA0002.20.967
MA0003.10.968
MA0004.10.0331
MA0006.10.0547
MA0007.10.431
MA0009.10.195
MA0014.10.64
MA0017.10.173
MA0018.22.67893e-4
MA0019.10.794
MA0024.10.508
MA0025.10.0649
MA0027.10.584
MA0028.10.0033
MA0029.10.107
MA0030.10.255
MA0031.10.0703
MA0035.20.0888
MA0038.10.0925
MA0039.20.0245
MA0040.10.082
MA0041.10.156
MA0042.10.19
MA0043.11.58002e-5
MA0046.10.604
MA0047.20.338
MA0048.10.206
MA0050.10.234
MA0051.10.856
MA0052.10.137
MA0055.10.805
MA0057.10.281
MA0058.10.00688
MA0059.10.0185
MA0060.10.174
MA0061.10.0454
MA0062.29.91866e-7
MA0065.20.0417
MA0066.10.971
MA0067.10.0252
MA0068.10.571
MA0069.10.27
MA0070.10.202
MA0071.10.733
MA0072.10.683
MA0073.10.708
MA0074.10.898
MA0076.10.0059
MA0077.10.91
MA0078.10.908
MA0079.20.939
MA0080.25.73563e-10
MA0081.10.0154
MA0083.12.07433e-4
MA0084.10.0233
MA0087.10.332
MA0088.10.464
MA0090.19.25736e-6
MA0091.10.2
MA0092.10.617
MA0093.10.0638
MA0099.20.179
MA0100.10.641
MA0101.10.00428
MA0102.20.00646
MA0103.13.2739e-5
MA0104.28.46522e-5
MA0105.10.0737
MA0106.10.34
MA0107.10.00775
MA0108.20.346
MA0111.10.545
MA0112.20.789
MA0113.10.256
MA0114.10.0611
MA0115.10.239
MA0116.10.121
MA0117.10.679
MA0119.10.986
MA0122.10.132
MA0124.10.608
MA0125.10.951
MA0131.10.235
MA0135.10.0487
MA0136.12.64754e-11
MA0137.20.112
MA0138.20.417
MA0139.10.364
MA0140.10.768
MA0141.10.712
MA0142.10.906
MA0143.10.42
MA0144.10.241
MA0145.10.501
MA0146.10.853
MA0147.11.95343e-4
MA0148.10.513
MA0149.10.458
MA0150.10.151
MA0152.10.0391
MA0153.10.583
MA0154.10.146
MA0155.10.76
MA0156.15.48295e-8
MA0157.10.0519
MA0159.10.00255
MA0160.10.484
MA0162.10.184
MA0163.10.0693
MA0164.10.359
MA0258.10.777
MA0259.10.0436



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12493

Novel motifP-value
10.241
100.196
1000.153
1010.298
1020.0212
1030.878
1040.546
1050.702
1060.872
1070.079
1080.633
1090.603
110.706
1100.495
1110.297
1120.745
1130.472
1140.333
1150.559
1160.457
1170.0291
1180.0686
1190.518
120.322
1200.479
1210.764
1220.067
1230.0101
1240.713
1250.942
1260.157
1270.834
1280.193
1290.567
130.0348
1300.134
1310.963
1320.576
1330.612
1340.0389
1350.912
1360.86
1370.593
1380.463
1390.00324
140.221
1400.907
1410.0159
1420.658
1430.639
1440.981
1450.781
1460.631
1470.246
1480.402
1490.488
150.239
1500.461
1510.57
1520.0593
1530.995
1540.663
1556.96266e-4
1560.906
1570.0605
1580.00783
1590.463
160.662
1600.853
1610.359
1620.12
1630.64
1640.0232
1650.176
1660.0454
1670.375
1680.406
1690.594
170.916
180.365
190.248
20.236
200.154
210.839
220.608
230.304
240.557
250.328
260.624
270.733
280.188
290.0353
30.335
300.147
310.974
323.1588e-7
330.94
340.966
350.197
360.048
370.633
380.218
390.924
40.85
400.164
410.766
420.476
430.443
440.222
450.844
460.973
470.191
480.45
490.255
50.899
500.772
510.985
520.615
530.462
540.948
550.608
560.897
570.915
580.229
590.402
60.689
600.575
610.58
620.58
630.9
640.166
650.901
660.222
670.298
680.214
690.864
70.141
700.35
710.307
720.199
730.614
740.41
750.167
760.0968
770.321
780.0726
790.016
80.959
800.998
810.638
820.529
830.277
840.689
850.42
860.558
870.446
880.532
890.15
90.333
900.513
910.695
920.498
930.813
940.738
950.753
960.53
970.428
980.037
990.00183



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12493


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002556 (fibroblast of periodontium)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000075 (subdivision of skeletal system)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001758 (periodontium)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0000165 (mouth)
0003672 (dentition)
0011137 (axial skeletal system)
0010323 (cranial skeletal system)
0003129 (skull)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000067 (human fibroblast of periodontium sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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