FF:11245-116E3: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005860 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005860 | ||
|HumanCAGEScanFiles=NCig10042;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor1.NCig10042.11245-116E3.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor1.NCig10042.11245-116E3.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor1.NCig10042.11245-116E3.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor1.NCig10042.11245-116E3.hg19.GCTATA.pairs.bed.gz | |||
|accession_numbers=CAGE;DRX008240;DRR009112;DRZ000537;DRZ001922;DRZ011887;DRZ013272 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037185;DRR041551;DRZ007193 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0002384,UBERON:0000479,UBERON:0000055,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0004923,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0004797,UBERON:0010317,UBERON:0007798,UBERON:0000415,UBERON:0007240,UBERON:0005742,UBERON:0005734,UBERON:0004664,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0004572,UBERON:0004537,UBERON:0001009,UBERON:0004663 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:1000306,CL:0002547 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000058 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 45: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor1.CNhs10874.11245-116E3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor1.CNhs10874.11245-116E3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor1.CNhs10874.11245-116E3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor1.CNhs10874.11245-116E3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor1.CNhs10874.11245-116E3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11245-116E3 | |id=FF:11245-116E3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000058 | ||
|is_obsolete= | |||
|library_id=CNhs10874 | |||
|library_id_phase_based=2:CNhs10874 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11245 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10012.TGACCA.11245 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11245 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10012.TGACCA.11245 | |||
|name=Fibroblast - Aortic Adventitial, donor1 | |name=Fibroblast - Aortic Adventitial, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 66: | ||
|profile_cagescan=NCig10042,,, | |profile_cagescan=NCig10042,,, | ||
|profile_hcage=CNhs10874,LSID703,release008,COMPLETED | |profile_hcage=CNhs10874,LSID703,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10012,,, | |profile_srnaseq=SRhi10012,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
| Line 54: | Line 81: | ||
|rna_rin=10 | |rna_rin=10 | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.16E+05 | ||
|rna_weight_ug=36.014 | |rna_weight_ug=36.014 | ||
|rnaseq_library_id=SRhi10012.TGACCA | |||
|sample_age=68 | |sample_age=68 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=CC-7014 | |sample_cell_catalog=CC-7014 | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 98: | ||
|sample_ethnicity=A | |sample_ethnicity=A | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;9.5389076388424e-234!GO:0005737;cytoplasm;3.01171346908493e-191!GO:0043226;organelle;1.36064273706588e-183!GO:0043229;intracellular organelle;2.5078360705315e-183!GO:0043231;intracellular membrane-bound organelle;4.32960166404899e-180!GO:0043227;membrane-bound organelle;1.03226998309792e-179!GO:0044422;organelle part;2.96261330226905e-139!GO:0044446;intracellular organelle part;6.87900478140923e-138!GO:0044444;cytoplasmic part;6.24224578942198e-135!GO:0032991;macromolecular complex;1.157870054037e-100!GO:0044238;primary metabolic process;5.14553956990426e-85!GO:0030529;ribonucleoprotein complex;3.64411905575064e-84!GO:0044237;cellular metabolic process;2.05872540374264e-83!GO:0005515;protein binding;1.65459463200541e-82!GO:0043170;macromolecule metabolic process;3.34851614809942e-78!GO:0043233;organelle lumen;4.0789357754388e-70!GO:0031974;membrane-enclosed lumen;4.0789357754388e-70!GO:0005634;nucleus;1.26787427578479e-67!GO:0044428;nuclear part;4.81577472506575e-67!GO:0003723;RNA binding;8.61725878033721e-65!GO:0005739;mitochondrion;4.30147234199648e-63!GO:0019538;protein metabolic process;6.51735472866841e-53!GO:0016043;cellular component organization and biogenesis;3.94441330745327e-52!GO:0005840;ribosome;1.52631365296332e-51!GO:0043234;protein complex;2.64995504165265e-51!GO:0006412;translation;5.39742274733749e-51!GO:0031090;organelle membrane;8.19475130804105e-49!GO:0044260;cellular macromolecule metabolic process;8.33489972955798e-47!GO:0044267;cellular protein metabolic process;3.09900026276764e-46!GO:0006396;RNA processing;6.54614671547779e-46!GO:0003735;structural constituent of ribosome;9.16421752602154e-46!GO:0033036;macromolecule localization;3.44765724382907e-44!GO:0015031;protein transport;3.61260460414549e-44!GO:0044429;mitochondrial part;8.14165739659695e-43!GO:0009058;biosynthetic process;1.15876900179486e-41!GO:0045184;establishment of protein localization;4.40542662376604e-41!GO:0008104;protein localization;6.08948562863224e-41!GO:0031981;nuclear lumen;8.2405735654073e-41!GO:0043283;biopolymer metabolic process;2.1600665131186e-40!GO:0044249;cellular biosynthetic process;8.84674168296318e-40!GO:0005829;cytosol;1.93832288437323e-39!GO:0009059;macromolecule biosynthetic process;5.56113460487399e-39!GO:0033279;ribosomal subunit;7.30610875589507e-39!GO:0031967;organelle envelope;1.15968140853802e-37!GO:0031975;envelope;2.18502065512106e-37!GO:0016071;mRNA metabolic process;8.04547275713176e-36!GO:0010467;gene expression;8.59021971421404e-36!GO:0046907;intracellular transport;8.95219441749e-36!GO:0008380;RNA splicing;4.39159153189506e-34!GO:0043228;non-membrane-bound organelle;4.89473628323342e-34!GO:0043232;intracellular non-membrane-bound organelle;4.89473628323342e-34!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.26383913609102e-33!GO:0006996;organelle organization and biogenesis;1.67723228477236e-33!GO:0065003;macromolecular complex assembly;2.07425324421666e-32!GO:0006397;mRNA processing;1.98935676375035e-31!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.12893143275787e-30!GO:0006886;intracellular protein transport;2.82763260344495e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.38141988083775e-29!GO:0022607;cellular component assembly;1.78631995106923e-28!GO:0005740;mitochondrial envelope;1.76351943047558e-27!GO:0031966;mitochondrial membrane;7.05798919150078e-26!GO:0006259;DNA metabolic process;1.12598404858101e-25!GO:0019866;organelle inner membrane;3.55478876662707e-25!GO:0005654;nucleoplasm;1.27237823213223e-24!GO:0005681;spliceosome;2.1471687131328e-24!GO:0005743;mitochondrial inner membrane;1.88649547242777e-23!GO:0007049;cell cycle;2.94826591008089e-23!GO:0051641;cellular localization;3.42264279015174e-23!GO:0051649;establishment of cellular localization;5.10082886828242e-23!GO:0044445;cytosolic part;8.47083721516417e-23!GO:0006457;protein folding;1.20901493387633e-22!GO:0006119;oxidative phosphorylation;4.49608942076222e-22!GO:0000166;nucleotide binding;1.19868083581907e-21!GO:0016462;pyrophosphatase activity;2.67159329005087e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.34765704393561e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;5.86354489610471e-21!GO:0017111;nucleoside-triphosphatase activity;1.08413314319196e-20!GO:0005783;endoplasmic reticulum;1.16773460616558e-20!GO:0015934;large ribosomal subunit;1.53010671068979e-20!GO:0044455;mitochondrial membrane part;3.1980658978331e-20!GO:0012505;endomembrane system;7.87786255212787e-20!GO:0044451;nucleoplasm part;1.5590495885553e-19!GO:0015935;small ribosomal subunit;2.81107227076869e-19!GO:0048770;pigment granule;1.47564643213255e-18!GO:0042470;melanosome;1.47564643213255e-18!GO:0031980;mitochondrial lumen;3.52812122331022e-18!GO:0005759;mitochondrial matrix;3.52812122331022e-18!GO:0003676;nucleic acid binding;6.29367591558845e-18!GO:0022618;protein-RNA complex assembly;8.9636020105357e-18!GO:0022402;cell cycle process;9.59172975777014e-18!GO:0000278;mitotic cell cycle;1.5437710582936e-17!GO:0005730;nucleolus;3.92746121014593e-17!GO:0016874;ligase activity;5.60017190375905e-17!GO:0006512;ubiquitin cycle;6.3933614012771e-17!GO:0044432;endoplasmic reticulum part;9.60993764411217e-17!GO:0008134;transcription factor binding;1.79611298379586e-16!GO:0005794;Golgi apparatus;2.00385757545473e-16!GO:0000502;proteasome complex (sensu Eukaryota);3.28867589187906e-16!GO:0005746;mitochondrial respiratory chain;3.37328687199671e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;9.77389446754722e-16!GO:0032553;ribonucleotide binding;1.13571382516441e-15!GO:0032555;purine ribonucleotide binding;1.13571382516441e-15!GO:0008135;translation factor activity, nucleic acid binding;1.65030594544157e-15!GO:0017076;purine nucleotide binding;1.92508022143862e-15!GO:0043285;biopolymer catabolic process;2.1969505180582e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;3.02797486460099e-15!GO:0006605;protein targeting;3.2792896975691e-15!GO:0044265;cellular macromolecule catabolic process;4.11683901858166e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.43993298475973e-15!GO:0019941;modification-dependent protein catabolic process;5.54722006994684e-15!GO:0043632;modification-dependent macromolecule catabolic process;5.54722006994684e-15!GO:0048193;Golgi vesicle transport;5.54722006994684e-15!GO:0006511;ubiquitin-dependent protein catabolic process;7.83122631867529e-15!GO:0044257;cellular protein catabolic process;8.32894054746217e-15!GO:0006974;response to DNA damage stimulus;1.06270933092625e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.23565650473711e-14!GO:0003954;NADH dehydrogenase activity;1.23565650473711e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.23565650473711e-14!GO:0005761;mitochondrial ribosome;1.58008866446595e-14!GO:0000313;organellar ribosome;1.58008866446595e-14!GO:0051186;cofactor metabolic process;1.68084033197333e-14!GO:0051082;unfolded protein binding;2.16538580808051e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.97644017414801e-14!GO:0030163;protein catabolic process;3.22606655283351e-14!GO:0009057;macromolecule catabolic process;3.57622768258983e-14!GO:0016192;vesicle-mediated transport;6.05971300197153e-14!GO:0016070;RNA metabolic process;2.73277099986591e-13!GO:0005694;chromosome;2.78858036674716e-13!GO:0000087;M phase of mitotic cell cycle;3.19096652683451e-13!GO:0007067;mitosis;4.50185405431175e-13!GO:0043412;biopolymer modification;4.63205580708232e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.33718275492468e-13!GO:0042254;ribosome biogenesis and assembly;5.70081336812254e-13!GO:0042775;organelle ATP synthesis coupled electron transport;6.39570201269828e-13!GO:0042773;ATP synthesis coupled electron transport;6.39570201269828e-13!GO:0030964;NADH dehydrogenase complex (quinone);8.04919112816897e-13!GO:0045271;respiratory chain complex I;8.04919112816897e-13!GO:0005747;mitochondrial respiratory chain complex I;8.04919112816897e-13!GO:0044248;cellular catabolic process;1.10571874178221e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;1.28148152090048e-12!GO:0000375;RNA splicing, via transesterification reactions;1.28148152090048e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.28148152090048e-12!GO:0005524;ATP binding;1.30366297094473e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.10313137045499e-12!GO:0032559;adenyl ribonucleotide binding;2.38794312044015e-12!GO:0022403;cell cycle phase;3.09739346646995e-12!GO:0030554;adenyl nucleotide binding;5.53790670230222e-12!GO:0044427;chromosomal part;5.99525007128153e-12!GO:0003743;translation initiation factor activity;6.20606541224482e-12!GO:0051301;cell division;8.45026815271525e-12!GO:0005793;ER-Golgi intermediate compartment;1.05254424595435e-11!GO:0006464;protein modification process;1.09437747792848e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.36368006782804e-11!GO:0006281;DNA repair;1.67988704134769e-11!GO:0006413;translational initiation;1.76811516307906e-11!GO:0006732;coenzyme metabolic process;2.30907931244151e-11!GO:0048523;negative regulation of cellular process;2.48123033849254e-11!GO:0009055;electron carrier activity;2.91488067930061e-11!GO:0005789;endoplasmic reticulum membrane;4.34514524767334e-11!GO:0051276;chromosome organization and biogenesis;4.49205240247092e-11!GO:0003712;transcription cofactor activity;5.0994117257324e-11!GO:0005635;nuclear envelope;5.24973433923334e-11!GO:0012501;programmed cell death;6.61713158692061e-11!GO:0031965;nuclear membrane;1.10480278330369e-10!GO:0006915;apoptosis;1.22701710544159e-10!GO:0009719;response to endogenous stimulus;1.50604416128679e-10!GO:0044453;nuclear membrane part;1.79322276411114e-10!GO:0051726;regulation of cell cycle;1.98152975830649e-10!GO:0009259;ribonucleotide metabolic process;2.00163795027086e-10!GO:0006446;regulation of translational initiation;2.38371320337796e-10!GO:0000074;regulation of progression through cell cycle;2.58209956383748e-10!GO:0008639;small protein conjugating enzyme activity;2.97794873852088e-10!GO:0016887;ATPase activity;3.13262613111642e-10!GO:0006260;DNA replication;3.81777743664413e-10!GO:0043687;post-translational protein modification;4.59254433528424e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.95396134522689e-10!GO:0004842;ubiquitin-protein ligase activity;6.52614676104924e-10!GO:0006163;purine nucleotide metabolic process;7.07349009580943e-10!GO:0019787;small conjugating protein ligase activity;7.62412509227393e-10!GO:0006913;nucleocytoplasmic transport;8.09079194545547e-10!GO:0016604;nuclear body;9.56957105322887e-10!GO:0000279;M phase;1.09784395259594e-09!GO:0042623;ATPase activity, coupled;1.18801330620492e-09!GO:0008219;cell death;1.19150153076821e-09!GO:0016265;death;1.19150153076821e-09!GO:0048519;negative regulation of biological process;1.33100033908657e-09!GO:0009150;purine ribonucleotide metabolic process;1.58602302674134e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;1.67448960384498e-09!GO:0051169;nuclear transport;1.7729363755778e-09!GO:0008565;protein transporter activity;2.48732697780691e-09!GO:0006461;protein complex assembly;2.88794756244293e-09!GO:0009260;ribonucleotide biosynthetic process;3.78486748727164e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.89110410486601e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.22510388983527e-09!GO:0006164;purine nucleotide biosynthetic process;4.23651918115988e-09!GO:0006399;tRNA metabolic process;4.47050360076416e-09!GO:0006323;DNA packaging;4.98368557099636e-09!GO:0003924;GTPase activity;5.00583582285947e-09!GO:0009199;ribonucleoside triphosphate metabolic process;5.93580154288067e-09!GO:0065004;protein-DNA complex assembly;6.55473140292724e-09!GO:0051246;regulation of protein metabolic process;7.62316471344667e-09!GO:0009141;nucleoside triphosphate metabolic process;9.42998297890127e-09!GO:0009152;purine ribonucleotide biosynthetic process;9.50504538264759e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.08938064666074e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.08938064666074e-08!GO:0006366;transcription from RNA polymerase II promoter;1.11531218394086e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.38960763106141e-08!GO:0009060;aerobic respiration;1.61021707961139e-08!GO:0005788;endoplasmic reticulum lumen;1.61797346343666e-08!GO:0015986;ATP synthesis coupled proton transport;1.61797346343666e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.61797346343666e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.73698678700953e-08!GO:0030120;vesicle coat;1.74302436369675e-08!GO:0030662;coated vesicle membrane;1.74302436369675e-08!GO:0016881;acid-amino acid ligase activity;1.76628584599046e-08!GO:0005643;nuclear pore;2.5065149817094e-08!GO:0006364;rRNA processing;2.55034367516657e-08!GO:0065002;intracellular protein transport across a membrane;3.51707820885068e-08!GO:0009142;nucleoside triphosphate biosynthetic process;3.51707820885068e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.51707820885068e-08!GO:0006333;chromatin assembly or disassembly;4.13292727076914e-08!GO:0016607;nuclear speck;4.72284195150393e-08!GO:0016072;rRNA metabolic process;4.88181890533914e-08!GO:0050794;regulation of cellular process;5.45739064075046e-08!GO:0045333;cellular respiration;6.3747933520265e-08!GO:0004386;helicase activity;6.45621549372406e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.53573081033595e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.53573081033595e-08!GO:0017038;protein import;7.04492607489293e-08!GO:0009056;catabolic process;7.34276170950809e-08!GO:0046034;ATP metabolic process;7.36679483846566e-08!GO:0005768;endosome;9.15033370478787e-08!GO:0015630;microtubule cytoskeleton;9.67556403290613e-08!GO:0048475;coated membrane;9.77853477409129e-08!GO:0030117;membrane coat;9.77853477409129e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.2426104081241e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.2426104081241e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.2426104081241e-07!GO:0019829;cation-transporting ATPase activity;1.34182645079964e-07!GO:0016491;oxidoreductase activity;1.52149897230102e-07!GO:0000785;chromatin;1.53969537026758e-07!GO:0043038;amino acid activation;1.77034881865022e-07!GO:0006418;tRNA aminoacylation for protein translation;1.77034881865022e-07!GO:0043039;tRNA aminoacylation;1.77034881865022e-07!GO:0006099;tricarboxylic acid cycle;2.40170970169446e-07!GO:0046356;acetyl-CoA catabolic process;2.40170970169446e-07!GO:0051187;cofactor catabolic process;2.51559655688576e-07!GO:0006334;nucleosome assembly;2.52378552614072e-07!GO:0030532;small nuclear ribonucleoprotein complex;2.58571974411469e-07!GO:0008026;ATP-dependent helicase activity;3.10603203396801e-07!GO:0051188;cofactor biosynthetic process;3.58174435353262e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.81121162048926e-07!GO:0043566;structure-specific DNA binding;3.81121162048926e-07!GO:0003697;single-stranded DNA binding;3.86085734233344e-07!GO:0032446;protein modification by small protein conjugation;3.90970359869618e-07!GO:0006754;ATP biosynthetic process;3.91060578735576e-07!GO:0006753;nucleoside phosphate metabolic process;3.91060578735576e-07!GO:0007005;mitochondrion organization and biogenesis;4.12008933561081e-07!GO:0009117;nucleotide metabolic process;4.1497904821832e-07!GO:0046930;pore complex;4.17757946448524e-07!GO:0050657;nucleic acid transport;4.29715051739486e-07!GO:0051236;establishment of RNA localization;4.29715051739486e-07!GO:0050658;RNA transport;4.29715051739486e-07!GO:0006403;RNA localization;4.42153957187837e-07!GO:0044431;Golgi apparatus part;4.45779145879907e-07!GO:0009109;coenzyme catabolic process;4.56016789772432e-07!GO:0016567;protein ubiquitination;4.87536659079686e-07!GO:0031324;negative regulation of cellular metabolic process;5.70138051023817e-07!GO:0043069;negative regulation of programmed cell death;6.95607562459378e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;7.52663253894136e-07!GO:0031497;chromatin assembly;9.54077116827887e-07!GO:0006084;acetyl-CoA metabolic process;1.00288177808935e-06!GO:0016853;isomerase activity;1.09048552502684e-06!GO:0043067;regulation of programmed cell death;1.12322218845123e-06!GO:0042981;regulation of apoptosis;1.20448547326062e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.25368227438762e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.32185322438043e-06!GO:0003714;transcription corepressor activity;1.33870437129318e-06!GO:0043066;negative regulation of apoptosis;1.49402867598834e-06!GO:0016859;cis-trans isomerase activity;1.60809648105879e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.1501196819751e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.21328173930881e-06!GO:0031988;membrane-bound vesicle;2.55378867576723e-06!GO:0015078;hydrogen ion transmembrane transporter activity;2.59104060988565e-06!GO:0016564;transcription repressor activity;3.29413887808845e-06!GO:0006916;anti-apoptosis;3.32220812866022e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.45068607067122e-06!GO:0000151;ubiquitin ligase complex;3.76086678412329e-06!GO:0005667;transcription factor complex;4.03003057042712e-06!GO:0045259;proton-transporting ATP synthase complex;4.03521705574491e-06!GO:0044440;endosomal part;4.10566178518449e-06!GO:0010008;endosome membrane;4.10566178518449e-06!GO:0005773;vacuole;4.11405197418872e-06!GO:0005798;Golgi-associated vesicle;4.3387134788184e-06!GO:0009892;negative regulation of metabolic process;4.43789865005735e-06!GO:0005525;GTP binding;4.81634839780588e-06!GO:0006613;cotranslational protein targeting to membrane;5.76108104502723e-06!GO:0000245;spliceosome assembly;5.78233344972405e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;5.90753937547646e-06!GO:0005819;spindle;5.98719637041713e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;6.22697091717707e-06!GO:0006752;group transfer coenzyme metabolic process;6.71616180950195e-06!GO:0045786;negative regulation of progression through cell cycle;6.75851944358281e-06!GO:0008361;regulation of cell size;8.49203346748653e-06!GO:0016740;transferase activity;9.06851239144426e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;9.25748878257667e-06!GO:0009108;coenzyme biosynthetic process;1.03882197440844e-05!GO:0051170;nuclear import;1.03882197440844e-05!GO:0016779;nucleotidyltransferase activity;1.04016027412904e-05!GO:0016049;cell growth;1.14364906866054e-05!GO:0031252;leading edge;1.19610284895388e-05!GO:0016787;hydrolase activity;1.27276381872168e-05!GO:0051028;mRNA transport;1.29449886575119e-05!GO:0005770;late endosome;1.3315958998717e-05!GO:0031982;vesicle;1.34432083566468e-05!GO:0005905;coated pit;1.3578522270712e-05!GO:0045454;cell redox homeostasis;1.38403777252315e-05!GO:0031410;cytoplasmic vesicle;1.42834276481696e-05!GO:0004298;threonine endopeptidase activity;1.44856538200185e-05!GO:0050789;regulation of biological process;1.46982169254199e-05!GO:0006793;phosphorus metabolic process;1.47720274306558e-05!GO:0006796;phosphate metabolic process;1.47720274306558e-05!GO:0016310;phosphorylation;1.59451952620736e-05!GO:0003724;RNA helicase activity;2.00769463850836e-05!GO:0006606;protein import into nucleus;2.01058992646732e-05!GO:0032561;guanyl ribonucleotide binding;2.11211839322827e-05!GO:0019001;guanyl nucleotide binding;2.11211839322827e-05!GO:0000323;lytic vacuole;2.41612474882717e-05!GO:0005764;lysosome;2.41612474882717e-05!GO:0001558;regulation of cell growth;2.43613358884914e-05!GO:0051329;interphase of mitotic cell cycle;2.45313124055612e-05!GO:0051789;response to protein stimulus;2.68804220442327e-05!GO:0006986;response to unfolded protein;2.68804220442327e-05!GO:0007010;cytoskeleton organization and biogenesis;2.83136024604669e-05!GO:0030867;rough endoplasmic reticulum membrane;2.87259621259856e-05!GO:0005762;mitochondrial large ribosomal subunit;2.94717251870882e-05!GO:0000315;organellar large ribosomal subunit;2.94717251870882e-05!GO:0043623;cellular protein complex assembly;3.06104196209517e-05!GO:0030036;actin cytoskeleton organization and biogenesis;3.36649984093707e-05!GO:0031968;organelle outer membrane;3.44320676022461e-05!GO:0005813;centrosome;3.62642244631722e-05!GO:0003713;transcription coactivator activity;3.99022661703853e-05!GO:0000139;Golgi membrane;4.06359463280077e-05!GO:0019867;outer membrane;4.07315642642809e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.18415801364664e-05!GO:0000775;chromosome, pericentric region;4.46567949674065e-05!GO:0008654;phospholipid biosynthetic process;4.77375269384148e-05!GO:0051325;interphase;5.38673652119452e-05!GO:0006091;generation of precursor metabolites and energy;5.41765289340236e-05!GO:0007051;spindle organization and biogenesis;5.52935422338268e-05!GO:0016563;transcription activator activity;5.66853636807834e-05!GO:0005769;early endosome;6.01458934720747e-05!GO:0016568;chromatin modification;6.29706806078887e-05!GO:0015980;energy derivation by oxidation of organic compounds;6.52093873713638e-05!GO:0005815;microtubule organizing center;7.22406954346981e-05!GO:0043021;ribonucleoprotein binding;7.88757732951403e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;9.13659738048888e-05!GO:0003899;DNA-directed RNA polymerase activity;0.000108521702413089!GO:0006612;protein targeting to membrane;0.000113772523430685!GO:0005048;signal sequence binding;0.000114817518616585!GO:0005741;mitochondrial outer membrane;0.000127079006211311!GO:0048522;positive regulation of cellular process;0.000149276815915569!GO:0033116;ER-Golgi intermediate compartment membrane;0.000152537307611413!GO:0000314;organellar small ribosomal subunit;0.000155881788893012!GO:0005763;mitochondrial small ribosomal subunit;0.000155881788893012!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000161912016622115!GO:0016481;negative regulation of transcription;0.000162289530590343!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000169987050688457!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000245502597901225!GO:0000075;cell cycle checkpoint;0.000259655062120782!GO:0008092;cytoskeletal protein binding;0.000287930560360777!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000289445980763!GO:0005885;Arp2/3 protein complex;0.00030285926553819!GO:0008186;RNA-dependent ATPase activity;0.000338777949535414!GO:0006261;DNA-dependent DNA replication;0.00037014604690678!GO:0009165;nucleotide biosynthetic process;0.000376111715376326!GO:0030029;actin filament-based process;0.000391397628845348!GO:0007050;cell cycle arrest;0.000395821332729575!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000435398746852084!GO:0051427;hormone receptor binding;0.00045016395411093!GO:0016363;nuclear matrix;0.00045016395411093!GO:0008250;oligosaccharyl transferase complex;0.000467003513605165!GO:0030663;COPI coated vesicle membrane;0.00048118712566145!GO:0030126;COPI vesicle coat;0.00048118712566145!GO:0030133;transport vesicle;0.000481964003971025!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000552455462510414!GO:0016044;membrane organization and biogenesis;0.000579950642531831!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000606020545801037!GO:0019899;enzyme binding;0.000615677100489186!GO:0004576;oligosaccharyl transferase activity;0.000679103956804419!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000681488247557953!GO:0006839;mitochondrial transport;0.000691283159776388!GO:0006626;protein targeting to mitochondrion;0.000731573726723443!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000744001731859476!GO:0005791;rough endoplasmic reticulum;0.000765588822328657!GO:0006414;translational elongation;0.00080216178456148!GO:0035257;nuclear hormone receptor binding;0.000862093195150758!GO:0040008;regulation of growth;0.00086458147511532!GO:0018196;peptidyl-asparagine modification;0.000866925499033294!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000866925499033294!GO:0000786;nucleosome;0.000868993771681388!GO:0003690;double-stranded DNA binding;0.000876280160418057!GO:0051252;regulation of RNA metabolic process;0.000881514073814229!GO:0051920;peroxiredoxin activity;0.000890217077760642!GO:0004004;ATP-dependent RNA helicase activity;0.000905400942635081!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00090817693283912!GO:0019843;rRNA binding;0.000963724183147289!GO:0043681;protein import into mitochondrion;0.000988686888710981!GO:0046474;glycerophospholipid biosynthetic process;0.000994683360557309!GO:0016197;endosome transport;0.00102700990827394!GO:0051168;nuclear export;0.00107745179592597!GO:0006891;intra-Golgi vesicle-mediated transport;0.00108437469426026!GO:0000776;kinetochore;0.00117375871758468!GO:0031072;heat shock protein binding;0.00128083256562842!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00134755367764032!GO:0030658;transport vesicle membrane;0.00135017096532931!GO:0030137;COPI-coated vesicle;0.00135017096532931!GO:0007243;protein kinase cascade;0.00140353359392933!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00147074932315134!GO:0015399;primary active transmembrane transporter activity;0.00147074932315134!GO:0043284;biopolymer biosynthetic process;0.0015145256628668!GO:0048500;signal recognition particle;0.00168972453509516!GO:0003729;mRNA binding;0.00173986650177455!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00181621943033536!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00181621943033536!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00181621943033536!GO:0005657;replication fork;0.00209564376765084!GO:0030132;clathrin coat of coated pit;0.00223768159362872!GO:0019222;regulation of metabolic process;0.00226184372112854!GO:0000082;G1/S transition of mitotic cell cycle;0.00227653570144325!GO:0004177;aminopeptidase activity;0.00232194036061608!GO:0065009;regulation of a molecular function;0.00235993099828732!GO:0046489;phosphoinositide biosynthetic process;0.00250367908696681!GO:0044262;cellular carbohydrate metabolic process;0.0026711488845998!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00267738999162262!GO:0044452;nucleolar part;0.00272327621624467!GO:0008180;signalosome;0.0027514938720927!GO:0000059;protein import into nucleus, docking;0.0028063624506819!GO:0005874;microtubule;0.00282685674711125!GO:0030176;integral to endoplasmic reticulum membrane;0.00306760643637683!GO:0030027;lamellipodium;0.00314697803390585!GO:0008047;enzyme activator activity;0.00315603426622305!GO:0015631;tubulin binding;0.00320800898884232!GO:0006950;response to stress;0.00324193633438646!GO:0030659;cytoplasmic vesicle membrane;0.00327294572513349!GO:0006383;transcription from RNA polymerase III promoter;0.00337932539892461!GO:0048487;beta-tubulin binding;0.00342858412788527!GO:0007006;mitochondrial membrane organization and biogenesis;0.00345697469686896!GO:0030118;clathrin coat;0.00346519394343466!GO:0007264;small GTPase mediated signal transduction;0.00354257220273772!GO:0007088;regulation of mitosis;0.00363198488209098!GO:0006302;double-strand break repair;0.00365013764010489!GO:0008094;DNA-dependent ATPase activity;0.0036644554568204!GO:0046483;heterocycle metabolic process;0.00379919986927526!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00382102386456151!GO:0045047;protein targeting to ER;0.00382102386456151!GO:0007052;mitotic spindle organization and biogenesis;0.00394852450644174!GO:0008033;tRNA processing;0.00399468596454875!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00411310782476176!GO:0008312;7S RNA binding;0.00414909204173798!GO:0016126;sterol biosynthetic process;0.00420691808899695!GO:0030134;ER to Golgi transport vesicle;0.00420980399115059!GO:0030660;Golgi-associated vesicle membrane;0.00433617919517272!GO:0003711;transcription elongation regulator activity;0.00435194304979944!GO:0003746;translation elongation factor activity;0.00459402177444153!GO:0006509;membrane protein ectodomain proteolysis;0.00460039950631898!GO:0033619;membrane protein proteolysis;0.00460039950631898!GO:0003684;damaged DNA binding;0.00468972944382563!GO:0031901;early endosome membrane;0.00468972944382563!GO:0007093;mitotic cell cycle checkpoint;0.00474506059723976!GO:0048471;perinuclear region of cytoplasm;0.00477781645410738!GO:0051128;regulation of cellular component organization and biogenesis;0.00485517353752825!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00486097324683477!GO:0051087;chaperone binding;0.00495486321842241!GO:0003682;chromatin binding;0.00496503490601721!GO:0065007;biological regulation;0.00518897782517314!GO:0043488;regulation of mRNA stability;0.00518897782517314!GO:0043487;regulation of RNA stability;0.00518897782517314!GO:0030880;RNA polymerase complex;0.00532236665076999!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00544999327153082!GO:0042802;identical protein binding;0.0054611680091542!GO:0000049;tRNA binding;0.00546374269481022!GO:0006402;mRNA catabolic process;0.00553988086278473!GO:0008632;apoptotic program;0.00558984352925004!GO:0033673;negative regulation of kinase activity;0.00570426101224493!GO:0006469;negative regulation of protein kinase activity;0.00570426101224493!GO:0008139;nuclear localization sequence binding;0.00600570971797527!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00608660144867279!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00635354730950445!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00635354730950445!GO:0017166;vinculin binding;0.00665286137629208!GO:0007040;lysosome organization and biogenesis;0.00676717761067715!GO:0005869;dynactin complex;0.00706537684325058!GO:0045045;secretory pathway;0.00713843748546582!GO:0030127;COPII vesicle coat;0.0071450283282608!GO:0012507;ER to Golgi transport vesicle membrane;0.0071450283282608!GO:0046467;membrane lipid biosynthetic process;0.0071450283282608!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00718474736078524!GO:0006417;regulation of translation;0.00722711282550606!GO:0044433;cytoplasmic vesicle part;0.00727585054846169!GO:0009967;positive regulation of signal transduction;0.00728899668262222!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00751274441734319!GO:0005684;U2-dependent spliceosome;0.00753799489605561!GO:0051052;regulation of DNA metabolic process;0.00801513644781346!GO:0051348;negative regulation of transferase activity;0.00801858274743879!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00804897531912489!GO:0030125;clathrin vesicle coat;0.00822855277212656!GO:0030665;clathrin coated vesicle membrane;0.00822855277212656!GO:0008022;protein C-terminus binding;0.00848449622920887!GO:0032984;macromolecular complex disassembly;0.00860875553378366!GO:0030521;androgen receptor signaling pathway;0.00867929966367816!GO:0048518;positive regulation of biological process;0.00869056513769028!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00902653049520617!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00904298204502613!GO:0015992;proton transport;0.0093900109104928!GO:0045941;positive regulation of transcription;0.0093900109104928!GO:0051287;NAD binding;0.00940133968238455!GO:0005862;muscle thin filament tropomyosin;0.00960013599892148!GO:0006595;polyamine metabolic process;0.00963517183506839!GO:0000339;RNA cap binding;0.00986900511756923!GO:0016272;prefoldin complex;0.0099881830629561!GO:0006818;hydrogen transport;0.0102051393535382!GO:0043022;ribosome binding;0.0103739429464111!GO:0006352;transcription initiation;0.0103739429464111!GO:0006892;post-Golgi vesicle-mediated transport;0.0104007175621487!GO:0006289;nucleotide-excision repair;0.0107394544141162!GO:0019752;carboxylic acid metabolic process;0.0108903761600498!GO:0043433;negative regulation of transcription factor activity;0.0108925972110098!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0110625990848163!GO:0000428;DNA-directed RNA polymerase complex;0.0110625990848163!GO:0043492;ATPase activity, coupled to movement of substances;0.0113582810091192!GO:0006082;organic acid metabolic process;0.0117906324638514!GO:0046519;sphingoid metabolic process;0.0119557472937457!GO:0005637;nuclear inner membrane;0.0121259495557703!GO:0045792;negative regulation of cell size;0.0121709161398334!GO:0006401;RNA catabolic process;0.0122164453219572!GO:0043624;cellular protein complex disassembly;0.0123262121784911!GO:0045893;positive regulation of transcription, DNA-dependent;0.0126937702969066!GO:0031124;mRNA 3'-end processing;0.0127695637951133!GO:0035258;steroid hormone receptor binding;0.0129137281597231!GO:0005832;chaperonin-containing T-complex;0.0129426266094576!GO:0045892;negative regulation of transcription, DNA-dependent;0.0133168477691429!GO:0008610;lipid biosynthetic process;0.0133168477691429!GO:0051540;metal cluster binding;0.0134582831840936!GO:0051536;iron-sulfur cluster binding;0.0134582831840936!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0135701621886774!GO:0007033;vacuole organization and biogenesis;0.0135729774400784!GO:0001726;ruffle;0.0137452943154328!GO:0009889;regulation of biosynthetic process;0.0138399862909404!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0139292963415426!GO:0008154;actin polymerization and/or depolymerization;0.0140052279033268!GO:0005096;GTPase activator activity;0.0140468177920939!GO:0003756;protein disulfide isomerase activity;0.0141313540255111!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0141313540255111!GO:0003678;DNA helicase activity;0.0141313540255111!GO:0030041;actin filament polymerization;0.014303857601145!GO:0043241;protein complex disassembly;0.014303857601145!GO:0001527;microfibril;0.0143059107576157!GO:0022408;negative regulation of cell-cell adhesion;0.0143278846188866!GO:0030119;AP-type membrane coat adaptor complex;0.0145846208854288!GO:0006497;protein amino acid lipidation;0.0145846208854288!GO:0030308;negative regulation of cell growth;0.0146020320793721!GO:0012506;vesicle membrane;0.0150107224250087!GO:0016408;C-acyltransferase activity;0.0154067310537599!GO:0050662;coenzyme binding;0.0158406195578856!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0158406195578856!GO:0006695;cholesterol biosynthetic process;0.0158888426575059!GO:0031326;regulation of cellular biosynthetic process;0.0170022232851905!GO:0016584;nucleosome positioning;0.0170563822514701!GO:0051539;4 iron, 4 sulfur cluster binding;0.0173738818256616!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0178225269796065!GO:0006650;glycerophospholipid metabolic process;0.0184388224767772!GO:0009116;nucleoside metabolic process;0.0184831626225373!GO:0006672;ceramide metabolic process;0.0186423907375984!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0192022444628638!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0192339186140769!GO:0007059;chromosome segregation;0.0192708629615095!GO:0031902;late endosome membrane;0.0193997674953076!GO:0006354;RNA elongation;0.0194618893816425!GO:0005669;transcription factor TFIID complex;0.0197143305200785!GO:0007034;vacuolar transport;0.019922890052201!GO:0000096;sulfur amino acid metabolic process;0.020229981812633!GO:0007160;cell-matrix adhesion;0.0203884455132783!GO:0000209;protein polyubiquitination;0.0206837938282184!GO:0016251;general RNA polymerase II transcription factor activity;0.0206837938282184!GO:0051101;regulation of DNA binding;0.0207392259678421!GO:0045936;negative regulation of phosphate metabolic process;0.0209069595630807!GO:0050811;GABA receptor binding;0.0219822760599662!GO:0007021;tubulin folding;0.0220906349225247!GO:0005774;vacuolar membrane;0.0221955329882556!GO:0031589;cell-substrate adhesion;0.0222566978678024!GO:0006520;amino acid metabolic process;0.0228690820070366!GO:0051098;regulation of binding;0.0229825234759476!GO:0006144;purine base metabolic process;0.0231107148952263!GO:0006740;NADPH regeneration;0.0231107148952263!GO:0006098;pentose-phosphate shunt;0.0231107148952263!GO:0009112;nucleobase metabolic process;0.0231696551442081!GO:0004674;protein serine/threonine kinase activity;0.0234368254327307!GO:0030384;phosphoinositide metabolic process;0.0234873765063229!GO:0006979;response to oxidative stress;0.0236655305157942!GO:0001953;negative regulation of cell-matrix adhesion;0.0239085183824711!GO:0030833;regulation of actin filament polymerization;0.0240345351994131!GO:0031529;ruffle organization and biogenesis;0.0240613991367219!GO:0032508;DNA duplex unwinding;0.024115858431411!GO:0032392;DNA geometric change;0.024115858431411!GO:0001952;regulation of cell-matrix adhesion;0.0242529137317763!GO:0006778;porphyrin metabolic process;0.0242794802992384!GO:0033013;tetrapyrrole metabolic process;0.0242794802992384!GO:0008168;methyltransferase activity;0.0243590456482128!GO:0008652;amino acid biosynthetic process;0.0245324174717616!GO:0005876;spindle microtubule;0.0247810171713225!GO:0030131;clathrin adaptor complex;0.0252084510963275!GO:0048468;cell development;0.0256809598014186!GO:0006897;endocytosis;0.0260628066357011!GO:0010324;membrane invagination;0.0260628066357011!GO:0030496;midbody;0.0262054883115134!GO:0008147;structural constituent of bone;0.0264852965486817!GO:0006984;ER-nuclear signaling pathway;0.0265126242180708!GO:0042770;DNA damage response, signal transduction;0.0273809986019753!GO:0031418;L-ascorbic acid binding;0.0273809986019753!GO:0006506;GPI anchor biosynthetic process;0.0274641579322929!GO:0006007;glucose catabolic process;0.0275482425963866!GO:0048144;fibroblast proliferation;0.0278409709440517!GO:0048145;regulation of fibroblast proliferation;0.0278409709440517!GO:0006405;RNA export from nucleus;0.0278409709440517!GO:0005801;cis-Golgi network;0.0279835099521242!GO:0006611;protein export from nucleus;0.028393993351084!GO:0031543;peptidyl-proline dioxygenase activity;0.0284081952420345!GO:0022890;inorganic cation transmembrane transporter activity;0.0285613665943932!GO:0031625;ubiquitin protein ligase binding;0.0288176821186158!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.029199808853752!GO:0033043;regulation of organelle organization and biogenesis;0.029199808853752!GO:0016741;transferase activity, transferring one-carbon groups;0.0304209017122963!GO:0006376;mRNA splice site selection;0.0308593093043143!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0308593093043143!GO:0022415;viral reproductive process;0.0309457263658396!GO:0006220;pyrimidine nucleotide metabolic process;0.0310668158909103!GO:0016860;intramolecular oxidoreductase activity;0.0310791495563796!GO:0006378;mRNA polyadenylation;0.0311283747706467!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0313519084498979!GO:0015002;heme-copper terminal oxidase activity;0.0313519084498979!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0313519084498979!GO:0004129;cytochrome-c oxidase activity;0.0313519084498979!GO:0022411;cellular component disassembly;0.0314151373820859!GO:0019206;nucleoside kinase activity;0.0322962337693505!GO:0050681;androgen receptor binding;0.0326990544663962!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0335500386952119!GO:0001872;zymosan binding;0.0336825394495928!GO:0001878;response to yeast;0.0336825394495928!GO:0008320;protein transmembrane transporter activity;0.0338880699220829!GO:0000792;heterochromatin;0.0339129093251991!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0341672793007462!GO:0031272;regulation of pseudopodium formation;0.0344262859751185!GO:0031269;pseudopodium formation;0.0344262859751185!GO:0031344;regulation of cell projection organization and biogenesis;0.0344262859751185!GO:0031268;pseudopodium organization and biogenesis;0.0344262859751185!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0344262859751185!GO:0031274;positive regulation of pseudopodium formation;0.0344262859751185!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0344615356314113!GO:0031123;RNA 3'-end processing;0.0345000464715272!GO:0035035;histone acetyltransferase binding;0.0345670131019997!GO:0032940;secretion by cell;0.0346071950177925!GO:0008629;induction of apoptosis by intracellular signals;0.0346071950177925!GO:0030508;thiol-disulfide exchange intermediate activity;0.034624223948506!GO:0008538;proteasome activator activity;0.0347328088848255!GO:0006268;DNA unwinding during replication;0.0349384249985972!GO:0031371;ubiquitin conjugating enzyme complex;0.0353330796824187!GO:0048146;positive regulation of fibroblast proliferation;0.0357295485370439!GO:0009303;rRNA transcription;0.0360155002169226!GO:0004287;prolyl oligopeptidase activity;0.0360155002169226!GO:0005784;translocon complex;0.0361573345767242!GO:0047485;protein N-terminus binding;0.0362891040925939!GO:0006505;GPI anchor metabolic process;0.0364465874291754!GO:0007017;microtubule-based process;0.0367759563181284!GO:0006275;regulation of DNA replication;0.0368862129804094!GO:0000922;spindle pole;0.0369664608646477!GO:0030032;lamellipodium biogenesis;0.0371053279684206!GO:0006310;DNA recombination;0.0372835301564683!GO:0042158;lipoprotein biosynthetic process;0.0373750484468254!GO:0030145;manganese ion binding;0.0374152645741925!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0375505051525154!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0384138912296231!GO:0032906;transforming growth factor-beta2 production;0.038531226991271!GO:0032909;regulation of transforming growth factor-beta2 production;0.038531226991271!GO:0030518;steroid hormone receptor signaling pathway;0.0386824401410369!GO:0000287;magnesium ion binding;0.0393628102113265!GO:0006284;base-excision repair;0.0393628102113265!GO:0051059;NF-kappaB binding;0.0408234253776119!GO:0003779;actin binding;0.0408234253776119!GO:0005092;GDP-dissociation inhibitor activity;0.0408234253776119!GO:0030503;regulation of cell redox homeostasis;0.0410806526216717!GO:0042168;heme metabolic process;0.0411749959721659!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0412804321873139!GO:0019798;procollagen-proline dioxygenase activity;0.0412804321873139!GO:0050790;regulation of catalytic activity;0.0413246826599477!GO:0008637;apoptotic mitochondrial changes;0.0416292122202487!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0417970985079034!GO:0000910;cytokinesis;0.0421799409643272!GO:0007030;Golgi organization and biogenesis;0.0425590089999696!GO:0042326;negative regulation of phosphorylation;0.0426576724112463!GO:0043065;positive regulation of apoptosis;0.0428504140856254!GO:0030433;ER-associated protein catabolic process;0.0441593546522274!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0441593546522274!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0442496879395571!GO:0044437;vacuolar part;0.045782783717423!GO:0006518;peptide metabolic process;0.0458542808348328!GO:0008234;cysteine-type peptidase activity;0.0458613181681425!GO:0008097;5S rRNA binding;0.0458613181681425!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0458613181681425!GO:0030911;TPR domain binding;0.0466830136652103!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0466830136652103!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0466830136652103!GO:0006118;electron transport;0.047177658981847!GO:0006607;NLS-bearing substrate import into nucleus;0.0476629141314632!GO:0005758;mitochondrial intermembrane space;0.0477997872415042!GO:0008287;protein serine/threonine phosphatase complex;0.0496320626203282!GO:0007162;negative regulation of cell adhesion;0.0497317361818495!GO:0004527;exonuclease activity;0.0497402174306573 | |||
|sample_id=11245 | |sample_id=11245 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 106: | ||
|sample_tissue=aorta | |sample_tissue=aorta | ||
|top_motifs=HSF1,2:1.66203140516;NKX2-2,8:1.58804072824;HMGA1,2:1.57038882225;UFEwm:1.54939401058;TAL1_TCF{3,4,12}:1.44117962098;EVI1:1.42548437243;HOX{A5,B5}:1.3920468884;GCM1,2:1.35160650942;XBP1:1.27394104746;IKZF1:1.2386982981;HES1:1.19902139096;AIRE:1.18990596077;MYBL2:1.15608244003;CDC5L:1.12520460662;TEAD1:1.10530547396;KLF4:1.08015702966;NR3C1:1.07333172715;HMX1:1.06500850581;ALX4:1.01432525532;GLI1..3:0.985903970864;EBF1:0.973615367932;NFE2L1:0.959311290704;LHX3,4:0.958918542168;TLX1..3_NFIC{dimer}:0.950943005967;ZIC1..3:0.945645508004;SRF:0.943652895476;GATA4:0.872559839417;NFIX:0.866670211374;GTF2A1,2:0.831786119311;TFAP4:0.790034486893;EN1,2:0.789936205289;MAFB:0.789435899892;ZNF384:0.722275822454;NKX3-2:0.703412701458;FOXL1:0.691652275101;NKX3-1:0.689717386457;RXR{A,B,G}:0.674522456459;TP53:0.656068895833;ADNP_IRX_SIX_ZHX:0.651977758173;NFATC1..3:0.631897456259;HBP1_HMGB_SSRP1_UBTF:0.624576658476;ESR1:0.59933475573;ZNF238:0.592311735875;ZBTB6:0.57557441496;POU3F1..4:0.567751696675;SMAD1..7,9:0.549425291155;HOX{A4,D4}:0.509070039979;PRDM1:0.500308531206;TBX4,5:0.486033722775;SOX17:0.468046103878;ATF6:0.444735540111;GTF2I:0.433458570349;GZF1:0.428543709096;HAND1,2:0.427074664326;MAZ:0.406522479463;ZNF423:0.391393637594;ARID5B:0.378455919254;SOX2:0.37772391631;ZNF148:0.365449345706;MYB:0.362792670366;TBP:0.35910091631;MTE{core}:0.342103145605;POU5F1:0.30218089012;HIF1A:0.295856451247;YY1:0.283598367786;E2F1..5:0.276850890148;SOX{8,9,10}:0.276521372383;XCPE1{core}:0.271596518718;FOXD3:0.268682152436;GFI1:0.266639159145;TEF:0.25131740791;NANOG{mouse}:0.249444359213;PPARG:0.236306797344;ELK1,4_GABP{A,B1}:0.23254227545;MZF1:0.224168134221;NFE2L2:0.202248699307;ONECUT1,2:0.195680710747;HLF:0.174966886389;POU1F1:0.170228040453;MEF2{A,B,C,D}:0.164415204569;GFI1B:0.138527848856;HIC1:0.135729805655;PAX8:0.12784267563;RXRA_VDR{dimer}:0.113070584792;ZNF143:0.0997345530017;TFAP2B:0.0877573238222;bHLH_family:0.0801102101011;FOXO1,3,4:0.0790313248475;FOSL2:0.0751052998179;HOXA9_MEIS1:0.0722450633054;TLX2:0.0706927356884;NR6A1:0.0693093076282;NRF1:0.0541554544941;TOPORS:0.0431649023343;PATZ1:0.0378840123277;STAT2,4,6:0.0191283292012;FOX{I1,J2}:0.0165937773767;BACH2:0.0164084967749;SPZ1:0.0103151819425;STAT5{A,B}:-0.007218116883;TFDP1:-0.00764193257664;CEBPA,B_DDIT3:-0.00844093208864;LEF1_TCF7_TCF7L1,2:-0.00845011777584;REST:-0.0113132789592;NFY{A,B,C}:-0.0170630970806;FOS_FOS{B,L1}_JUN{B,D}:-0.03108314284;DBP:-0.035528666426;PAX6:-0.0387063120858;PAX5:-0.0632188795311;NHLH1,2:-0.0781562939326;AR:-0.0798264492067;HNF1A:-0.081860998486;MYFfamily:-0.0907160420533;TFCP2:-0.102857552338;MTF1:-0.133584207081;NFIL3:-0.156162578236;TGIF1:-0.164771028954;IKZF2:-0.170048800979;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.171774786451;NKX2-1,4:-0.172419077471;RREB1:-0.200055637501;ELF1,2,4:-0.21196503895;PDX1:-0.230474409861;NFE2:-0.254491676147;ZFP161:-0.256550678277;IRF1,2:-0.268106647309;GATA6:-0.281325524474;STAT1,3:-0.282104085567;RFX1:-0.298765978943;FOXM1:-0.316237039413;VSX1,2:-0.31820336743;LMO2:-0.330801595333;MED-1{core}:-0.336802624744;DMAP1_NCOR{1,2}_SMARC:-0.346241471911;RUNX1..3:-0.35223028786;EGR1..3:-0.352352120473;HNF4A_NR2F1,2:-0.353983449043;NR5A1,2:-0.357346751563;TFAP2{A,C}:-0.377624160239;SPI1:-0.377804411288;SOX5:-0.392765462321;PAX3,7:-0.395867339902;JUN:-0.399238593699;AHR_ARNT_ARNT2:-0.406228071083;SP1:-0.420100107634;NFKB1_REL_RELA:-0.427483785941;IRF7:-0.430046839406;T:-0.437022987629;EP300:-0.437514558592;CREB1:-0.445570000644;PAX1,9:-0.476967956899;SPIB:-0.498342645278;FOXP3:-0.506286008463;SREBF1,2:-0.510051878418;ETS1,2:-0.513548179398;FOXA2:-0.517203716435;NKX6-1,2:-0.523175286882;FOX{D1,D2}:-0.525083817957;PRRX1,2:-0.540090778835;BREu{core}:-0.553591557353;BPTF:-0.565644865938;SNAI1..3:-0.567739790869;ATF2:-0.569803373254;PBX1:-0.570214596483;PAX4:-0.57782428841;CRX:-0.606981615904;PAX2:-0.631981305803;ATF5_CREB3:-0.640609956145;OCT4_SOX2{dimer}:-0.645731013579;HOX{A6,A7,B6,B7}:-0.650133065897;ESRRA:-0.656563740496;CDX1,2,4:-0.704058958929;ZBTB16:-0.711583076449;NANOG:-0.73603454417;FOXP1:-0.803204760255;ZEB1:-0.818968539764;RBPJ:-0.843520782818;PITX1..3:-0.861030052081;ATF4:-0.863126304835;NR1H4:-0.865189253046;POU2F1..3:-0.895261924804;FOXN1:-0.989071420051;ALX1:-0.990856573458;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.01324241291;RFX2..5_RFXANK_RFXAP:-1.03146763582;CUX2:-1.04879187847;POU6F1:-1.05630297732;NKX2-3_NKX2-5:-1.11084497829;MYOD1:-1.12081588629;FOX{F1,F2,J1}:-1.3494191269;FOXQ1:-1.35862952278;RORA:-1.40960348103 | |top_motifs=HSF1,2:1.66203140516;NKX2-2,8:1.58804072824;HMGA1,2:1.57038882225;UFEwm:1.54939401058;TAL1_TCF{3,4,12}:1.44117962098;EVI1:1.42548437243;HOX{A5,B5}:1.3920468884;GCM1,2:1.35160650942;XBP1:1.27394104746;IKZF1:1.2386982981;HES1:1.19902139096;AIRE:1.18990596077;MYBL2:1.15608244003;CDC5L:1.12520460662;TEAD1:1.10530547396;KLF4:1.08015702966;NR3C1:1.07333172715;HMX1:1.06500850581;ALX4:1.01432525532;GLI1..3:0.985903970864;EBF1:0.973615367932;NFE2L1:0.959311290704;LHX3,4:0.958918542168;TLX1..3_NFIC{dimer}:0.950943005967;ZIC1..3:0.945645508004;SRF:0.943652895476;GATA4:0.872559839417;NFIX:0.866670211374;GTF2A1,2:0.831786119311;TFAP4:0.790034486893;EN1,2:0.789936205289;MAFB:0.789435899892;ZNF384:0.722275822454;NKX3-2:0.703412701458;FOXL1:0.691652275101;NKX3-1:0.689717386457;RXR{A,B,G}:0.674522456459;TP53:0.656068895833;ADNP_IRX_SIX_ZHX:0.651977758173;NFATC1..3:0.631897456259;HBP1_HMGB_SSRP1_UBTF:0.624576658476;ESR1:0.59933475573;ZNF238:0.592311735875;ZBTB6:0.57557441496;POU3F1..4:0.567751696675;SMAD1..7,9:0.549425291155;HOX{A4,D4}:0.509070039979;PRDM1:0.500308531206;TBX4,5:0.486033722775;SOX17:0.468046103878;ATF6:0.444735540111;GTF2I:0.433458570349;GZF1:0.428543709096;HAND1,2:0.427074664326;MAZ:0.406522479463;ZNF423:0.391393637594;ARID5B:0.378455919254;SOX2:0.37772391631;ZNF148:0.365449345706;MYB:0.362792670366;TBP:0.35910091631;MTE{core}:0.342103145605;POU5F1:0.30218089012;HIF1A:0.295856451247;YY1:0.283598367786;E2F1..5:0.276850890148;SOX{8,9,10}:0.276521372383;XCPE1{core}:0.271596518718;FOXD3:0.268682152436;GFI1:0.266639159145;TEF:0.25131740791;NANOG{mouse}:0.249444359213;PPARG:0.236306797344;ELK1,4_GABP{A,B1}:0.23254227545;MZF1:0.224168134221;NFE2L2:0.202248699307;ONECUT1,2:0.195680710747;HLF:0.174966886389;POU1F1:0.170228040453;MEF2{A,B,C,D}:0.164415204569;GFI1B:0.138527848856;HIC1:0.135729805655;PAX8:0.12784267563;RXRA_VDR{dimer}:0.113070584792;ZNF143:0.0997345530017;TFAP2B:0.0877573238222;bHLH_family:0.0801102101011;FOXO1,3,4:0.0790313248475;FOSL2:0.0751052998179;HOXA9_MEIS1:0.0722450633054;TLX2:0.0706927356884;NR6A1:0.0693093076282;NRF1:0.0541554544941;TOPORS:0.0431649023343;PATZ1:0.0378840123277;STAT2,4,6:0.0191283292012;FOX{I1,J2}:0.0165937773767;BACH2:0.0164084967749;SPZ1:0.0103151819425;STAT5{A,B}:-0.007218116883;TFDP1:-0.00764193257664;CEBPA,B_DDIT3:-0.00844093208864;LEF1_TCF7_TCF7L1,2:-0.00845011777584;REST:-0.0113132789592;NFY{A,B,C}:-0.0170630970806;FOS_FOS{B,L1}_JUN{B,D}:-0.03108314284;DBP:-0.035528666426;PAX6:-0.0387063120858;PAX5:-0.0632188795311;NHLH1,2:-0.0781562939326;AR:-0.0798264492067;HNF1A:-0.081860998486;MYFfamily:-0.0907160420533;TFCP2:-0.102857552338;MTF1:-0.133584207081;NFIL3:-0.156162578236;TGIF1:-0.164771028954;IKZF2:-0.170048800979;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.171774786451;NKX2-1,4:-0.172419077471;RREB1:-0.200055637501;ELF1,2,4:-0.21196503895;PDX1:-0.230474409861;NFE2:-0.254491676147;ZFP161:-0.256550678277;IRF1,2:-0.268106647309;GATA6:-0.281325524474;STAT1,3:-0.282104085567;RFX1:-0.298765978943;FOXM1:-0.316237039413;VSX1,2:-0.31820336743;LMO2:-0.330801595333;MED-1{core}:-0.336802624744;DMAP1_NCOR{1,2}_SMARC:-0.346241471911;RUNX1..3:-0.35223028786;EGR1..3:-0.352352120473;HNF4A_NR2F1,2:-0.353983449043;NR5A1,2:-0.357346751563;TFAP2{A,C}:-0.377624160239;SPI1:-0.377804411288;SOX5:-0.392765462321;PAX3,7:-0.395867339902;JUN:-0.399238593699;AHR_ARNT_ARNT2:-0.406228071083;SP1:-0.420100107634;NFKB1_REL_RELA:-0.427483785941;IRF7:-0.430046839406;T:-0.437022987629;EP300:-0.437514558592;CREB1:-0.445570000644;PAX1,9:-0.476967956899;SPIB:-0.498342645278;FOXP3:-0.506286008463;SREBF1,2:-0.510051878418;ETS1,2:-0.513548179398;FOXA2:-0.517203716435;NKX6-1,2:-0.523175286882;FOX{D1,D2}:-0.525083817957;PRRX1,2:-0.540090778835;BREu{core}:-0.553591557353;BPTF:-0.565644865938;SNAI1..3:-0.567739790869;ATF2:-0.569803373254;PBX1:-0.570214596483;PAX4:-0.57782428841;CRX:-0.606981615904;PAX2:-0.631981305803;ATF5_CREB3:-0.640609956145;OCT4_SOX2{dimer}:-0.645731013579;HOX{A6,A7,B6,B7}:-0.650133065897;ESRRA:-0.656563740496;CDX1,2,4:-0.704058958929;ZBTB16:-0.711583076449;NANOG:-0.73603454417;FOXP1:-0.803204760255;ZEB1:-0.818968539764;RBPJ:-0.843520782818;PITX1..3:-0.861030052081;ATF4:-0.863126304835;NR1H4:-0.865189253046;POU2F1..3:-0.895261924804;FOXN1:-0.989071420051;ALX1:-0.990856573458;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.01324241291;RFX2..5_RFXANK_RFXAP:-1.03146763582;CUX2:-1.04879187847;POU6F1:-1.05630297732;NKX2-3_NKX2-5:-1.11084497829;MYOD1:-1.12081588629;FOX{F1,F2,J1}:-1.3494191269;FOXQ1:-1.35862952278;RORA:-1.40960348103 | ||
|xref= | |||
}} | }} | ||
Revision as of 15:15, 17 October 2017
| Name: | Fibroblast - Aortic Adventitial, donor1 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10874 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9 |
| CAGEd-oPOSSUM: | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10874
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10874
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.9 |
| 10 | 10 | 0.538 |
| 100 | 100 | 0.735 |
| 101 | 101 | 0.508 |
| 102 | 102 | 0.295 |
| 103 | 103 | 0.277 |
| 104 | 104 | 0.878 |
| 105 | 105 | 0.156 |
| 106 | 106 | 0.578 |
| 107 | 107 | 0.0835 |
| 108 | 108 | 0.813 |
| 109 | 109 | 0.286 |
| 11 | 11 | 0.735 |
| 110 | 110 | 0.729 |
| 111 | 111 | 0.457 |
| 112 | 112 | 0.949 |
| 113 | 113 | 0.00468 |
| 114 | 114 | 0.471 |
| 115 | 115 | 0.0756 |
| 116 | 116 | 0.104 |
| 117 | 117 | 0.981 |
| 118 | 118 | 0.322 |
| 119 | 119 | 0.554 |
| 12 | 12 | 0.182 |
| 120 | 120 | 0.184 |
| 121 | 121 | 0.923 |
| 122 | 122 | 0.101 |
| 123 | 123 | 2.27635e-4 |
| 124 | 124 | 0.0798 |
| 125 | 125 | 0.948 |
| 126 | 126 | 0.26 |
| 127 | 127 | 0.0952 |
| 128 | 128 | 0.809 |
| 129 | 129 | 0.692 |
| 13 | 13 | 0.892 |
| 130 | 130 | 0.622 |
| 131 | 131 | 0.342 |
| 132 | 132 | 0.764 |
| 133 | 133 | 0.501 |
| 134 | 134 | 0.647 |
| 135 | 135 | 0.867 |
| 136 | 136 | 0.221 |
| 137 | 137 | 0.243 |
| 138 | 138 | 0.0842 |
| 139 | 139 | 0.801 |
| 14 | 14 | 0.14 |
| 140 | 140 | 0.517 |
| 141 | 141 | 0.903 |
| 142 | 142 | 0.692 |
| 143 | 143 | 0.754 |
| 144 | 144 | 0.857 |
| 145 | 145 | 0.267 |
| 146 | 146 | 0.448 |
| 147 | 147 | 0.128 |
| 148 | 148 | 0.551 |
| 149 | 149 | 0.0121 |
| 15 | 15 | 0.52 |
| 150 | 150 | 0.0388 |
| 151 | 151 | 0.456 |
| 152 | 152 | 0.0828 |
| 153 | 153 | 0.681 |
| 154 | 154 | 0.935 |
| 155 | 155 | 0.00345 |
| 156 | 156 | 0.425 |
| 157 | 157 | 0.096 |
| 158 | 158 | 0.00212 |
| 159 | 159 | 0.167 |
| 16 | 16 | 0.0363 |
| 160 | 160 | 0.555 |
| 161 | 161 | 0.834 |
| 162 | 162 | 0.894 |
| 163 | 163 | 0.9 |
| 164 | 164 | 0.331 |
| 165 | 165 | 0.612 |
| 166 | 166 | 0.31 |
| 167 | 167 | 0.757 |
| 168 | 168 | 0.631 |
| 169 | 169 | 0.254 |
| 17 | 17 | 0.628 |
| 18 | 18 | 0.199 |
| 19 | 19 | 0.0165 |
| 2 | 2 | 0.599 |
| 20 | 20 | 0.657 |
| 21 | 21 | 0.0673 |
| 22 | 22 | 0.608 |
| 23 | 23 | 0.675 |
| 24 | 24 | 0.677 |
| 25 | 25 | 0.359 |
| 26 | 26 | 0.79 |
| 27 | 27 | 0.894 |
| 28 | 28 | 0.248 |
| 29 | 29 | 0.309 |
| 3 | 3 | 0.729 |
| 30 | 30 | 0.458 |
| 31 | 31 | 0.66 |
| 32 | 32 | 6.11409e-11 |
| 33 | 33 | 0.866 |
| 34 | 34 | 0.694 |
| 35 | 35 | 0.687 |
| 36 | 36 | 0.0779 |
| 37 | 37 | 0.251 |
| 38 | 38 | 0.328 |
| 39 | 39 | 0.266 |
| 4 | 4 | 0.444 |
| 40 | 40 | 0.297 |
| 41 | 41 | 0.783 |
| 42 | 42 | 0.728 |
| 43 | 43 | 0.66 |
| 44 | 44 | 0.106 |
| 45 | 45 | 0.474 |
| 46 | 46 | 0.537 |
| 47 | 47 | 0.788 |
| 48 | 48 | 0.832 |
| 49 | 49 | 0.125 |
| 5 | 5 | 0.897 |
| 50 | 50 | 0.946 |
| 51 | 51 | 0.732 |
| 52 | 52 | 0.832 |
| 53 | 53 | 0.0691 |
| 54 | 54 | 0.905 |
| 55 | 55 | 0.243 |
| 56 | 56 | 0.653 |
| 57 | 57 | 0.955 |
| 58 | 58 | 0.238 |
| 59 | 59 | 0.268 |
| 6 | 6 | 0.284 |
| 60 | 60 | 0.645 |
| 61 | 61 | 0.591 |
| 62 | 62 | 0.743 |
| 63 | 63 | 0.547 |
| 64 | 64 | 0.592 |
| 65 | 65 | 0.657 |
| 66 | 66 | 0.703 |
| 67 | 67 | 0.721 |
| 68 | 68 | 0.876 |
| 69 | 69 | 0.606 |
| 7 | 7 | 0.47 |
| 70 | 70 | 0.797 |
| 71 | 71 | 0.301 |
| 72 | 72 | 0.957 |
| 73 | 73 | 0.0184 |
| 74 | 74 | 0.0721 |
| 75 | 75 | 0.394 |
| 76 | 76 | 0.313 |
| 77 | 77 | 0.0559 |
| 78 | 78 | 0.344 |
| 79 | 79 | 0.00357 |
| 8 | 8 | 0.217 |
| 80 | 80 | 0.497 |
| 81 | 81 | 0.793 |
| 82 | 82 | 0.984 |
| 83 | 83 | 0.75 |
| 84 | 84 | 0.418 |
| 85 | 85 | 0.965 |
| 86 | 86 | 0.607 |
| 87 | 87 | 0.017 |
| 88 | 88 | 0.608 |
| 89 | 89 | 0.0765 |
| 9 | 9 | 0.933 |
| 90 | 90 | 0.646 |
| 91 | 91 | 0.673 |
| 92 | 92 | 0.502 |
| 93 | 93 | 0.487 |
| 94 | 94 | 0.85 |
| 95 | 95 | 0.319 |
| 96 | 96 | 0.433 |
| 97 | 97 | 0.572 |
| 98 | 98 | 0.104 |
| 99 | 99 | 0.0075 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10874
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000058 human fibroblast of the aortic adventitia sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
1000306 (fibroblast of tunica adventitia of artery)
0002547 (fibroblast of the aortic adventitia)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0002384 (connective tissue)
0000479 (tissue)
0000055 (vessel)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0004923 (organ component layer)
0000477 (anatomical cluster)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0004797 (blood vessel layer)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0000415 (artery wall)
0007240 (tunica adventitia of artery)
0005742 (adventitia)
0005734 (tunica adventitia of blood vessel)
0004664 (aorta tunica adventitia)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
0004663 (aorta wall)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000058 (human fibroblast of the aortic adventitia sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
