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Difference between revisions of "FF:11251-116E9"

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{{f5samples
 
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0000064,UBERON:0004121,UBERON:0000062,UBERON:0000475,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0004923,UBERON:0005423,UBERON:0001444,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0003102,UBERON:0000925,UBERON:0003729,UBERON:0006598,UBERON:0002532,UBERON:0001555,UBERON:0000153,UBERON:0007811,UBERON:0000924,UBERON:0000165,UBERON:0007026,UBERON:0000930,UBERON:0006601,UBERON:0006595
+
|DRA_sample_Accession=CAGE@SAMD00004992
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000035,CL:0000548,CL:0000034,CL:0000012,CL:0002321,CL:0000063,CL:0000066,CL:0002371,CL:0000076,CL:0000221,CL:0000325,CL:0000220,CL:0000240,CL:0000311,CL:0000079,CL:0000004,CL:0000237,CL:0000036,CL:0000255,CL:0002076,CL:0002336,CL:0002251,CL:0002261,CL:0002170,CL:0000357,CL:0000223,CL:0000114
+
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004992
 +
|accession_numbers=CAGE;DRX008315;DRR009187;DRZ000612;DRZ001997;DRZ011962;DRZ013347
 +
|accession_numbers_RNASeq=sRNA-Seq;DRX037036;DRR041402;DRZ007044
 +
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000033,UBERON:0001007,UBERON:0000344,UBERON:0004121,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004923,UBERON:0001444,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003729,UBERON:0010317,UBERON:0001555,UBERON:0000153,UBERON:0007811,UBERON:0000165
 +
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0000325,CL:0000240,CL:0000311,CL:0000079,CL:0000237,CL:0000255,CL:0002076,CL:0002336,CL:0002251,CL:0002261,CL:0002170
 
|ancestors_in_disease_facet=
 
|ancestors_in_disease_facet=
 +
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000083
 
|comment=
 
|comment=
 
|created_by=
 
|created_by=
 
|creation_date=
 
|creation_date=
 +
|data_phase=2
 +
|datafreeze_phase=2
 
|def=
 
|def=
 
|expression_enrichment_score=chr1:209979467..209979494,-!p1@IRF6!2.22!182.77!IRF6;;chr17:7493405..7493419,-!p1@SOX15!2.21!159.53!SOX15;;chr3:189507432..189507459,+!p1@TP63!2.16!144.16!TP63;;chr12:66218255..66218304,+!p3@HMGA2!1.92!212.12!HMGA2;;chr11:34642612..34642646,+!p1@EHF!1.89!76.20!EHF;;chr15:83953397..83953425,-!p1@BNC1!1.81!72.77!BNC1;;chr1:209979411..209979433,-!p2@IRF6!1.78!59.72!IRF6;;chr3:111314186..111314204,-!p1@ZBED2!1.70!48.70!ZBED2;;chr5:134369905..134369972,-!p1@PITX1!1.68!70.92!PITX1;;chr5:134369879..134369898,-!p2@PITX1!1.64!42.96!PITX1;;chr12:54785074..54785122,-!p2@ZNF385A!1.60!58.05!ZNF385A;;chr6:10415276..10415341,-!p2@TFAP2A!1.58!44.44!TFAP2A;;chr12:66218598..66218645,+!p2@HMGA2!1.56!157.59!HMGA2;;chr17:7492684..7492778,-!p2@SOX15!1.55!70.74!SOX15;;chr12:66218212..66218244,+!p5@HMGA2!1.54!48.52!HMGA2;;chr1:6479968..6479986,-!p1@HES2!1.54!33.98!HES2;;chr12:66218183..66218209,+!p4@HMGA2!1.51!59.44!HMGA2;;chr6:10412600..10412637,-!p1@TFAP2A!1.49!49.63!TFAP2A;;chr12:54785054..54785072,-!p4@ZNF385A!1.40!27.41!ZNF385A;;chr13:73633131..73633149,+!p1@KLF5!1.36!227.12!KLF5;;chr8:10588010..10588030,-!p1@SOX7!1.35!21.20!SOX7;;chr15:101069113..101069169,-!p1@CERS3!1.31!19.63!CERS3;;chr9:100615499..100615519,+!p1@FOXE1!1.31!19.26!FOXE1;;chr8:102504651..102504683,+!p1@GRHL2!1.29!18.52!GRHL2;;chr9:96717629..96717644,-!p1@BARX1!1.26!17.22!BARX1;;chr6:10415484..10415508,-!p3@TFAP2A!1.24!16.57!TFAP2A;;chr12:66218836..66218888,+!p1@HMGA2!1.23!147.22!HMGA2;;chr22:19748231..19748317,+!p1@TBX1!1.23!16.02!TBX1;;chr1:158979792..158979814,+!p2@IFI16!1.20!141.29!IFI16;;chr6:10419768..10419819,-!p6@TFAP2A!1.20!14.91!TFAP2A;;chr12:66218378..66218401,+!p6@HMGA2!1.15!20.28!HMGA2;;chr19:45908292..45908374,-!p1@PPP1R13L!1.14!111.94!PPP1R13L;;chr8:128747661..128747703,+!p6@MYC!1.12!16.67!MYC;;chr8:128748308..128748324,+!p2@MYC!1.11!325.45!MYC;;chr3:111314230..111314241,-!p2@ZBED2!1.10!11.57!ZBED2;;chr14:37131058..37131139,+!p1@PAX9!1.09!11.39!PAX9;;chr5:2751762..2751784,-!p1@IRX2!1.09!11.20!IRX2;;chr17:80797886..80797906,-!p1@ZNF750!1.08!11.02!ZNF750;;chr12:66218443..66218461,+!p8@HMGA2!1.07!13.80!HMGA2;;chr12:66357214..66357233,+!p13@HMGA2!1.06!10.56!HMGA2;;chr12:66218573..66218596,+!p7@HMGA2!1.04!14.91!HMGA2;;chr3:189507460..189507471,+!p3@TP63!1.02!9.54!TP63;;chr1:24645832..24645853,+!p1@GRHL3!1.02!9.35!GRHL3;;chr8:49833948..49833973,-!p2@SNAI2!1.00!58.79!SNAI2;;chr2:60780607..60780624,-!p2@BCL11A!1.00!27.96!BCL11A;;chr12:66218420..66218439,+!p12@HMGA2!1.00!8.89!HMGA2;;chr12:66218003..66218018,+!p9@HMGA2!0.99!10.74!HMGA2;;chr2:46524897..46524911,+!p2@EPAS1!0.98!24.35!EPAS1;;chr4:188916918..188916942,+!p1@ZFP42!0.98!8.52!ZFP42;;chr12:66218469..66218477,+!p16@HMGA2!0.98!8.52!HMGA2;;chr8:49833978..49833996,-!p1@SNAI2!0.97!175.55!SNAI2;;chr6:126240380..126240430,+!p2@NCOA7!0.97!22.04!NCOA7;;chr6:10412576..10412599,-!p5@TFAP2A!0.97!8.33!TFAP2A;;chr11:129245526..129245553,+!p1@BARX2!0.97!8.33!BARX2;;chr1:209979449..209979460,-!p3@IRF6!0.97!8.24!IRF6;;chr16:79634624..79634642,-!p1@MAF!0.93!30.28!MAF;;chr4:299227..299272,-!p1@ZNF732!0.92!7.31!ZNF732;;chr2:63277948..63277974,+!p1@OTX1!0.91!7.22!OTX1;;chr6:106546808..106546833,+!p3@PRDM1!0.90!8.89!PRDM1;;chr9:2158443..2158481,+!p2@SMARCA2!0.87!18.89!SMARCA2;;chr4:111544219..111544240,-!p1@PITX2!0.87!6.39!PITX2;;chr11:47236584..47236679,+!p1@DDB2!0.86!72.22!DDB2;;chr2:178128149..178128198,-!p2@NFE2L2!0.86!35.37!NFE2L2;;chr19:42636586..42636607,-!p1@POU2F2!0.86!18.24!POU2F2;;chr17:41623009..41623053,-!p4@ETV4!0.86!10.37!ETV4;;chr12:66218152..66218174,+!p10@HMGA2!0.86!6.76!HMGA2;;chr11:65667884..65667895,-!p2@FOSL1!0.85!25.09!FOSL1;;chr1:24645921..24645973,+!p2@GRHL3!0.85!6.02!GRHL3;;chr15:83953373..83953386,-!p2@BNC1!0.85!6.02!BNC1;;chr2:208030647..208030689,-!p1@KLF7!0.84!52.59!KLF7;;chr2:60778035..60778060,-!p4@BCL11A!0.83!7.04!BCL11A;;chr17:8027418..8027432,-!p1@HES7!0.83!5.83!HES7;;chr21:38071430..38071456,+!p1@SIM2!0.83!5.83!SIM2;;chr6:29648890..29648944,-!p1@ZFP57!0.82!5.65!ZFP57;;chr14:29235961..29236008,+!p1@FOXG1!0.81!5.46!FOXG1;;chr20:55204351..55204377,+!p1@TFAP2C!0.80!6.94!TFAP2C;;chr8:128747709..128747723,+!p20@MYC!0.80!5.37!MYC;;chr5:2751785..2751808,-!p2@IRX2!0.80!5.28!IRX2;;chr11:34642656..34642667,+!p2@EHF!0.80!5.28!EHF;;chr2:5832508..5832524,+!p1@SOX11!0.79!5.18!SOX11;;chr6:126240356..126240379,+!p7@NCOA7!0.78!6.30!NCOA7;;chr15:67458836..67458859,+!p22@SMAD3!0.78!5.00!SMAD3;;chr2:85360499..85360598,+!p1@TCF7L1!0.77!29.63!TCF7L1;;chr19:2867325..2867348,+!p1@ZNF556!0.77!4.91!ZNF556;;chr20:22565370..22565388,-!p2@FOXA2!0.76!4.81!FOXA2;;chr3:189507523..189507535,+!p5@TP63!0.76!4.81!TP63;;chr12:66358080..66358094,+!p15@HMGA2!0.75!4.63!HMGA2;;chr6:34204672..34204692,+!p1@HMGA1!0.74!570.62!HMGA1;;chr13:41593425..41593480,-!p1@ELF1!0.74!31.48!ELF1;;chr6:34524093..34524135,-!p1@SPDEF!0.74!4.54!SPDEF;;chr1:158979872..158979898,+!p3@IFI16!0.73!14.91!IFI16;;chr3:181429704..181429722,+!p1@SOX2!0.73!4.35!SOX2;;chr1:24646263..24646277,+!p4@GRHL3!0.71!4.17!GRHL3;;chr17:41623692..41623715,-!p1@ETV4!0.70!19.35!ETV4;;chr2:122042770..122042785,-!p1@TFCP2L1!0.70!3.98!TFCP2L1;;chr4:57522598..57522664,-!p3@HOPX!0.70!3.98!HOPX;;chr21:40177845..40177863,+!p1@ETS2!0.69!266.93!ETS2;;chr17:41623259..41623278,-!p7@ETV4!0.69!4.63!ETV4;;chr11:65554528..65554546,+!p1@OVOL1!0.69!3.89!OVOL1;;chr12:27485762..27485776,+!p3@ARNTL2!0.68!11.30!ARNTL2;;chr1:158979851..158979865,+!p5@IFI16!0.68!9.17!IFI16;;chr1:40367530..40367597,-!p1@MYCL1!0.68!7.31!MYCL1;;chr2:46524878..46524891,+!p3@EPAS1!0.68!7.22!EPAS1;;chr16:79633894..79633954,-!p3@MAF!0.67!7.68!MAF;;chr1:37940170..37940190,+!p1@ZC3H12A!0.66!51.66!ZC3H12A;;chr2:60780753..60780800,-!p1@BCL11A!0.66!20.37!BCL11A;;chr17:38465413..38465438,+!p5@RARA!0.66!6.02!RARA;;chr6:10412392..10412409,-!p4@TFAP2A!0.66!4.17!TFAP2A;;chr2:169312600..169312606,+!p2@CERS6!0.65!5.83!CERS6;;chr8:28243785..28243799,-!p6@ZNF395!0.65!4.35!ZNF395;;chr5:3595977..3595999,+!p1@IRX1!0.65!3.52!IRX1;;chr15:67458861..67458879,+!p17@SMAD3!0.65!3.52!SMAD3;;chr20:18038521..18038571,-!p1@OVOL2!0.65!3.52!OVOL2;;chr17:17726907..17726958,-!p2@SREBF1!0.64!24.35!SREBF1;;chr4:57522166..57522260,-!p2@HOPX!0.64!3.98!HOPX;;chr4:57547454..57547469,-!p1@HOPX!0.64!3.33!HOPX;;chr14:21566731..21566836,-!p1@ZNF219!0.63!41.66!ZNF219;;chr5:137804484..137804498,+!p2@EGR1!0.63!15.00!EGR1;;chr5:3595934..3595957,+!p2@IRX1!0.63!3.24!IRX1;;chr6:10419824..10419840,-!p9@TFAP2A!0.63!3.24!TFAP2A;;chr8:128747729..128747748,+!p14@MYC!0.63!3.24!MYC;;chr4:57522674..57522699,-!p5@HOPX!0.63!3.24!HOPX;;chr9:22447422..22447483,+!p1@DMRTA1!0.63!3.24!DMRTA1;;chr20:22565185..22565223,-!p3@FOXA2!0.63!3.24!FOXA2;;chr19:20188776..20188826,+!p1@ZNF90!0.62!9.72!ZNF90;;chr13:73636252..73636307,+!p2@KLF5!0.62!3.80!KLF5;;chr6:106546786..106546802,+!p6@PRDM1!0.62!3.15!PRDM1;;chr15:83953782..83953786,-!p5@BNC1!0.62!3.15!BNC1;;chr17:41622925..41622976,-!p3@ETV4!0.61!5.00!ETV4;;chr20:22564895..22564910,-!p1@FOXA2!0.61!3.06!FOXA2;;chr14:69259772..69259790,-!p1@ZFP36L1!0.59!365.17!ZFP36L1;;chr20:45142154..45142227,-!p1@ZNF334!0.59!6.48!ZNF334;;chr16:79634595..79634620,-!p2@MAF!0.59!5.83!MAF;;chr5:178368186..178368238,+!p1@ZNF454!0.59!5.74!ZNF454;;chr8:28243813..28243839,-!p4@ZNF395!0.59!5.74!ZNF395;;chr8:102504979..102505010,+!p2@GRHL2!0.59!2.87!GRHL2;;chr1:209979375..209979386,-!p4@IRF6!0.59!2.87!IRF6;;chr15:83953694..83953708,-!p4@BNC1!0.59!2.87!BNC1;;chr11:128392273..128392308,-!p2@ETS1!0.58!14.35!ETS1;;chr6:1312325..1312340,+!p1@FOXQ1!0.58!5.00!FOXQ1;;chr9:96717678..96717689,-!p2@BARX1!0.58!2.78!BARX1;;chr8:28243934..28243993,-!p3@ZNF395!0.57!8.70!ZNF395;;chr17:38465441..38465481,+!p6@RARA!0.57!3.52!RARA;;chr17:48072574..48072597,-!p1@DLX3!0.57!2.69!DLX3;;chr14:29236269..29236285,+!p3@FOXG1!0.57!2.69!FOXG1;;chr8:103667935..103667960,-!p1@KLF10!0.56!148.14!KLF10;;chr19:58341656..58341694,+!p5@ZNF587!0.56!3.33!ZNF587;;chr14:90085820..90085840,-!p6@FOXN3!0.56!2.59!FOXN3;;chr4:111544254..111544270,-!p3@PITX2!0.56!2.59!PITX2;;chr8:10588174..10588200,-!p3@SOX7!0.56!2.59!SOX7;;chr5:137801160..137801176,+!p1@EGR1!0.54!317.49!EGR1;;chr12:96588219..96588263,+!p2@ELK3!0.54!22.31!ELK3;;chr19:53758058..53758088,-!p2@ZNF677!0.54!9.81!ZNF677;;chr12:53625966..53626012,-!p2@RARG!0.54!7.68!RARG;;chr3:32023232..32023273,+!p1@ZNF860!0.54!3.80!ZNF860;;chr18:53089493..53089517,-!p15@TCF4!0.54!2.50!TCF4;;chr8:102504690..102504704,+!p3@GRHL2!0.54!2.50!GRHL2;;chr19:20278012..20278034,+!p1@ZNF486!0.53!25.28!ZNF486;;chr4:206390..206444,+!p1@ZNF876P!0.53!4.81!ZNF876P;;chr2:166326200..166326216,+!p1@CSRNP3!0.53!3.89!CSRNP3;;chr1:37945588..37945604,+!p3@ZC3H12A!0.53!2.41!ZC3H12A;;chr5:3595961..3595975,+!p3@IRX1!0.53!2.41!IRX1;;chr6:34524025..34524045,-!p3@SPDEF!0.53!2.41!SPDEF;;chr8:128747757..128747800,+!p7@MYC!0.52!3.43!MYC;;chr8:128748470..128748487,+!p1@MYC!0.51!324.80!MYC;;chr2:43453734..43453751,-!p1@ZFP36L2!0.51!316.00!ZFP36L2;;chr11:65667846..65667868,-!p1@FOSL1!0.51!78.24!FOSL1;;chr18:3449720..3449749,+!p2@TGIF1!0.51!5.65!TGIF1;;chr20:50721803..50721857,-!p2@ZFP64!0.51!3.98!ZFP64;;chrX:56258811..56258838,+!p2@KLF8!0.51!3.24!KLF8;;chr12:66218904..66218913,+!p11@HMGA2!0.51!2.22!HMGA2;;chr21:38071403..38071428,+!p2@SIM2!0.51!2.22!SIM2;;chr4:111558135..111558198,-!p2@PITX2!0.51!2.22!PITX2;;chr10:70320074..70320106,+!p1@TET1!0.50!5.18!TET1;;chr2:10091815..10091864,+!p1@GRHL1!0.50!3.15!GRHL1;;chr6:106546834..106546850,+!p4@PRDM1!0.50!2.13!PRDM1;;chr12:66218413..66218418,+!p17@HMGA2!0.50!2.13!HMGA2;;chr1:10856694..10856715,-!p3@CASZ1!0.50!2.13!CASZ1;;chr1:154975229..154975247,+!p6@ZBTB7B!0.50!2.13!ZBTB7B;;chr19:9731872..9731915,-!p1@ZNF561!0.49!36.48!ZNF561;;chr1:151032782..151032801,+!p4@MLLT11!0.49!4.91!MLLT11;;chr17:41622765..41622821,-!p2@ETV4!0.49!3.61!ETV4;;chr8:28243661..28243709,-!p1@ZNF395!0.48!15.37!ZNF395;;chr21:40177892..40177903,+!p2@ETS2!0.48!10.37!ETS2;;chr19:22817119..22817145,+!p1@ZNF492!0.48!3.89!ZNF492;;chr15:101069186..101069200,-!p4@CERS3!0.48!2.04!CERS3;;chr17:7492504..7492520,-!p3@SOX15!0.48!2.04!SOX15;;chr18:3447536..3447542,+!p23@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|expression_enrichment_score=chr1:209979467..209979494,-!p1@IRF6!2.22!182.77!IRF6;;chr17:7493405..7493419,-!p1@SOX15!2.21!159.53!SOX15;;chr3:189507432..189507459,+!p1@TP63!2.16!144.16!TP63;;chr12:66218255..66218304,+!p3@HMGA2!1.92!212.12!HMGA2;;chr11:34642612..34642646,+!p1@EHF!1.89!76.20!EHF;;chr15:83953397..83953425,-!p1@BNC1!1.81!72.77!BNC1;;chr1:209979411..209979433,-!p2@IRF6!1.78!59.72!IRF6;;chr3:111314186..111314204,-!p1@ZBED2!1.70!48.70!ZBED2;;chr5:134369905..134369972,-!p1@PITX1!1.68!70.92!PITX1;;chr5:134369879..134369898,-!p2@PITX1!1.64!42.96!PITX1;;chr12:54785074..54785122,-!p2@ZNF385A!1.60!58.05!ZNF385A;;chr6:10415276..10415341,-!p2@TFAP2A!1.58!44.44!TFAP2A;;chr12:66218598..66218645,+!p2@HMGA2!1.56!157.59!HMGA2;;chr17:7492684..7492778,-!p2@SOX15!1.55!70.74!SOX15;;chr12:66218212..66218244,+!p5@HMGA2!1.54!48.52!HMGA2;;chr1:6479968..6479986,-!p1@HES2!1.54!33.98!HES2;;chr12:66218183..66218209,+!p4@HMGA2!1.51!59.44!HMGA2;;chr6:10412600..10412637,-!p1@TFAP2A!1.49!49.63!TFAP2A;;chr12:54785054..54785072,-!p4@ZNF385A!1.40!27.41!ZNF385A;;chr13:73633131..73633149,+!p1@KLF5!1.36!227.12!KLF5;;chr8:10588010..10588030,-!p1@SOX7!1.35!21.20!SOX7;;chr15:101069113..101069169,-!p1@CERS3!1.31!19.63!CERS3;;chr9:100615499..100615519,+!p1@FOXE1!1.31!19.26!FOXE1;;chr8:102504651..102504683,+!p1@GRHL2!1.29!18.52!GRHL2;;chr9:96717629..96717644,-!p1@BARX1!1.26!17.22!BARX1;;chr6:10415484..10415508,-!p3@TFAP2A!1.24!16.57!TFAP2A;;chr12:66218836..66218888,+!p1@HMGA2!1.23!147.22!HMGA2;;chr22:19748231..19748317,+!p1@TBX1!1.23!16.02!TBX1;;chr1:158979792..158979814,+!p2@IFI16!1.20!141.29!IFI16;;chr6:10419768..10419819,-!p6@TFAP2A!1.20!14.91!TFAP2A;;chr12:66218378..66218401,+!p6@HMGA2!1.15!20.28!HMGA2;;chr19:45908292..45908374,-!p1@PPP1R13L!1.14!111.94!PPP1R13L;;chr8:128747661..128747703,+!p6@MYC!1.12!16.67!MYC;;chr8:128748308..128748324,+!p2@MYC!1.11!325.45!MYC;;chr3:111314230..111314241,-!p2@ZBED2!1.10!11.57!ZBED2;;chr14:37131058..37131139,+!p1@PAX9!1.09!11.39!PAX9;;chr5:2751762..2751784,-!p1@IRX2!1.09!11.20!IRX2;;chr17:80797886..80797906,-!p1@ZNF750!1.08!11.02!ZNF750;;chr12:66218443..66218461,+!p8@HMGA2!1.07!13.80!HMGA2;;chr12:66357214..66357233,+!p13@HMGA2!1.06!10.56!HMGA2;;chr12:66218573..66218596,+!p7@HMGA2!1.04!14.91!HMGA2;;chr3:189507460..189507471,+!p3@TP63!1.02!9.54!TP63;;chr1:24645832..24645853,+!p1@GRHL3!1.02!9.35!GRHL3;;chr8:49833948..49833973,-!p2@SNAI2!1.00!58.79!SNAI2;;chr2:60780607..60780624,-!p2@BCL11A!1.00!27.96!BCL11A;;chr12:66218420..66218439,+!p12@HMGA2!1.00!8.89!HMGA2;;chr12:66218003..66218018,+!p9@HMGA2!0.99!10.74!HMGA2;;chr2:46524897..46524911,+!p2@EPAS1!0.98!24.35!EPAS1;;chr4:188916918..188916942,+!p1@ZFP42!0.98!8.52!ZFP42;;chr12:66218469..66218477,+!p16@HMGA2!0.98!8.52!HMGA2;;chr8:49833978..49833996,-!p1@SNAI2!0.97!175.55!SNAI2;;chr6:126240380..126240430,+!p2@NCOA7!0.97!22.04!NCOA7;;chr6:10412576..10412599,-!p5@TFAP2A!0.97!8.33!TFAP2A;;chr11:129245526..129245553,+!p1@BARX2!0.97!8.33!BARX2;;chr1:209979449..209979460,-!p3@IRF6!0.97!8.24!IRF6;;chr16:79634624..79634642,-!p1@MAF!0.93!30.28!MAF;;chr4:299227..299272,-!p1@ZNF732!0.92!7.31!ZNF732;;chr2:63277948..63277974,+!p1@OTX1!0.91!7.22!OTX1;;chr6:106546808..106546833,+!p3@PRDM1!0.90!8.89!PRDM1;;chr9:2158443..2158481,+!p2@SMARCA2!0.87!18.89!SMARCA2;;chr4:111544219..111544240,-!p1@PITX2!0.87!6.39!PITX2;;chr11:47236584..47236679,+!p1@DDB2!0.86!72.22!DDB2;;chr2:178128149..178128198,-!p2@NFE2L2!0.86!35.37!NFE2L2;;chr19:42636586..42636607,-!p1@POU2F2!0.86!18.24!POU2F2;;chr17:41623009..41623053,-!p4@ETV4!0.86!10.37!ETV4;;chr12:66218152..66218174,+!p10@HMGA2!0.86!6.76!HMGA2;;chr11:65667884..65667895,-!p2@FOSL1!0.85!25.09!FOSL1;;chr1:24645921..24645973,+!p2@GRHL3!0.85!6.02!GRHL3;;chr15:83953373..83953386,-!p2@BNC1!0.85!6.02!BNC1;;chr2:208030647..208030689,-!p1@KLF7!0.84!52.59!KLF7;;chr2:60778035..60778060,-!p4@BCL11A!0.83!7.04!BCL11A;;chr17:8027418..8027432,-!p1@HES7!0.83!5.83!HES7;;chr21:38071430..38071456,+!p1@SIM2!0.83!5.83!SIM2;;chr6:29648890..29648944,-!p1@ZFP57!0.82!5.65!ZFP57;;chr14:29235961..29236008,+!p1@FOXG1!0.81!5.46!FOXG1;;chr20:55204351..55204377,+!p1@TFAP2C!0.80!6.94!TFAP2C;;chr8:128747709..128747723,+!p20@MYC!0.80!5.37!MYC;;chr5:2751785..2751808,-!p2@IRX2!0.80!5.28!IRX2;;chr11:34642656..34642667,+!p2@EHF!0.80!5.28!EHF;;chr2:5832508..5832524,+!p1@SOX11!0.79!5.18!SOX11;;chr6:126240356..126240379,+!p7@NCOA7!0.78!6.30!NCOA7;;chr15:67458836..67458859,+!p22@SMAD3!0.78!5.00!SMAD3;;chr2:85360499..85360598,+!p1@TCF7L1!0.77!29.63!TCF7L1;;chr19:2867325..2867348,+!p1@ZNF556!0.77!4.91!ZNF556;;chr20:22565370..22565388,-!p2@FOXA2!0.76!4.81!FOXA2;;chr3:189507523..189507535,+!p5@TP63!0.76!4.81!TP63;;chr12:66358080..66358094,+!p15@HMGA2!0.75!4.63!HMGA2;;chr6:34204672..34204692,+!p1@HMGA1!0.74!570.62!HMGA1;;chr13:41593425..41593480,-!p1@ELF1!0.74!31.48!ELF1;;chr6:34524093..34524135,-!p1@SPDEF!0.74!4.54!SPDEF;;chr1:158979872..158979898,+!p3@IFI16!0.73!14.91!IFI16;;chr3:181429704..181429722,+!p1@SOX2!0.73!4.35!SOX2;;chr1:24646263..24646277,+!p4@GRHL3!0.71!4.17!GRHL3;;chr17:4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.74!PAWR;;chr14:105927191..105927216,+!p6@MTA1!0.15!0.74!MTA1;;chr19:48774586..48774670,+!p1@ZNF114!0.15!0.74!ZNF114;;chr19:57078830..57078848,+!p4@ZNF470!0.15!0.74!ZNF470;;chr1:164528687..164528711,+!p6@PBX1!0.15!0.65!PBX1;;chr7:99679311..99679322,-!p3@ZNF3!0.15!0.65!ZNF3;;chr8:145515263..145515299,+!p1@HSF1!0.14!89.63!HSF1;;chr1:93811438..93811548,+!p1@DR1!0.14!66.39!DR1;;chr7:99613212..99613236,+!p1@ZKSCAN1!0.14!42.96!ZKSCAN1;;chr5:34929677..34929789,+!p1@DNAJC21!0.14!35.74!DNAJC21;;chr2:231084659..231084721,-!p1@SP110!0.14!28.80!SP110;;chr19:20844368..20844407,-!p1@ZNF626!0.14!16.85!ZNF626;;chr19:42580274..42580375,+!p1@ZNF574!0.14!13.80!ZNF574;;chr22:42666624..42666673,-!p@chr22:42666624..42666673,-!0.14!13.15!TCF20;;chrX:24167828..24167890,+!p1@ZFX!0.14!12.96!ZFX;;chr4:95128999..95129056,+!p2@SMARCAD1!0.14!12.41!SMARCAD1;;chr2:61108695..61108753,+!p1@REL!0.14!7.78!REL;;chr19:52901094..52901134,+!p1@ZNF528!0.14!7.59!ZNF528;;chr6:43139041..43139094,+!p3@SRF!0.14!6.30!SRF;;chr17:7382856..7382889,-!p3@ZBTB4!0.14!4.17!ZBTB4;;chr19:58071201..58071238,-!p1@ZNF550!0.14!3.61!ZNF550;;chr16:67062996..67063016,+!p3@CBFB!0.14!2.96!CBFB;;chr1:164528340..164528379,+!p4@PBX1!0.14!2.22!PBX1;;chr22:42229210..42229229,+!p3@SREBF2!0.14!2.13!SREBF2;;chr2:37458749..37458766,-!p2@CEBPZ!0.14!1.85!CEBPZ;;chr10:77161133..77161176,-!p3@ZNF503!0.14!1.85!ZNF503;;chr19:37341160..37341194,-!p2@ZNF790!0.14!1.85!ZNF790;;chr19:52956798..52956843,+!p1@ZNF578!0.14!1.67!ZNF578;;chr14:64970427..64970457,+!p3@ZBTB1!0.14!1.67!ZBTB1;;chr11:7041554..7041602,-!p1@ZNF214!0.14!1.57!ZNF214;;chr10:97890262..97890298,+!p4@ZNF518A!0.14!1.39!ZNF518A;;chr18:77867121..77867138,+!p2@ADNP2!0.14!1.39!ADNP2;;chr6:15249128..15249177,+!p4@JARID2!0.14!1.39!JARID2;;chr2:28616316..28616327,+!p5@FOSL2!0.14!1.30!FOSL2;;chr2:231084639..231084654,-!p2@SP110!0.14!1.20!SP110;;chr15:77713299..77713316,+!p3@HMG20A!0.14!1.11!HMG20A;;chr19:56152471..56152482,+!p6@ZNF580!0.14!1.11!ZNF580;;chr14:105886349..105886360,+!p3@MTA1!0.14!0.93!MTA1;;chr12:80083722..80083766,-!p12@PAWR!0.14!0.83!PAWR;;chr13:46543346..46543367,-!p9@ZC3H13!0.14!0.74!ZC3H13;;chr20:52185283..52185294,-!p5@ZNF217!0.14!0.74!ZNF217;;chr22:41697484..41697496,+!p3@ZC3H7B!0.14!0.74!ZC3H7B;;chr3:141105705..141105770,+!p4@ZBTB38!0.14!0.65!ZBTB38;;chr2:101591314..101591333,+!p2@NPAS2!0.14!0.56!NPAS2;;chr12:3068957..3068978,+!p6@TEAD4!0.14!0.56!TEAD4;;chr10:3823938..3823954,-!p13@KLF6!0.14!0.37!KLF6;;chr10:70320041..70320065,+!p2@TET1!0.14!0.37!TET1;;chr11:128392258..128392264,-!p7@ETS1!0.14!0.37!ETS1;;chr11:34663913..34663945,+!p6@EHF!0.14!0.37!EHF;;chr11:62369084..62369093,-!p9@MTA2!0.14!0.37!MTA2;;chr12:10856697..10856712,-!p12@CSDA!0.14!0.37!CSDA;;chr12:10865922..10865934,-!p15@CSDA!0.14!0.37!CSDA;;chr12:10875481..10875504,-!p14@CSDA!0.14!0.37!CSDA;;chr12:124496534..124496544,+!p6@ZNF664!0.14!0.37!ZNF664;;chr12:80085120..80085156,-!p14@PAWR!0.14!0.37!PAWR;;chr14:21567009..21567025,-!p9@ZNF219!0.14!0.37!ZNF219;;chr14:21994525..21994547,-!p4@SALL2!0.14!0.37!SALL2;;chr14:35874077..35874091,-!p8@NFKBIA!0.14!0.37!NFKBIA;;chr22:24093130..24093141,-!p4@ZNF70!0.14!0.37!ZNF70;;chr2:10091783..10091811,+!p2@GRHL1!0.14!0.37!GRHL1;;chr2:180726058..180726098,-!p3@ZNF385B!0.14!0.37!ZNF385B;;chr2:28616301..28616302,+!p9@FOSL2!0.14!0.37!FOSL2;;chr2:60780730..60780742,-!p5@BCL11A!0.14!0.37!BCL11A;;chr3:141087562..141087594,+!p12@ZBTB38!0.14!0.37!ZBTB38;;chr3:178789220..178789255,-!p6@ZMAT3!0.14!0.37!ZMAT3;;chr4:95174454..95174465,+!p8@SMARCAD1!0.14!0.37!SMARCAD1;;chr5:134369643..134369675,-!p4@PITX1!0.14!0.37!PITX1;;chr6:106547079..106547114,+!p9@PRDM1!0.14!0.37!PRDM1;;chr6:15245752..15245767,+!p14@JARID2!0.14!0.37!JARID2;;chr6:15245824..15245846,+!p13@JARID2!0.14!0.37!JARID2;;
 +
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000312;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002251;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000344;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003729
 +
|ffid_belonging_in_development=CL:0000357,CL:0000223,CL:0000114,CL:0000221
 
|fonse_cell_line=
 
|fonse_cell_line=
 
|fonse_cell_line_closure=
 
|fonse_cell_line_closure=
Line 35: Line 44:
 
|fonse_treatment_closure=
 
|fonse_treatment_closure=
 
|has_quality=
 
|has_quality=
 +
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520oral%252c%2520donor1.CNhs10879.11251-116E9.hg19.nobarcode.bam
 +
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520oral%252c%2520donor1.CNhs10879.11251-116E9.hg19.ctss.bed.gz
 +
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520oral%252c%2520donor1.CNhs10879.11251-116E9.hg19.nobarcode.rdna.fa.gz
 +
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520oral%252c%2520donor1.CNhs10879.11251-116E9.hg38.nobarcode.bam
 +
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520oral%252c%2520donor1.CNhs10879.11251-116E9.hg38.nobarcode.ctss.bed.gz
 
|id=FF:11251-116E9
 
|id=FF:11251-116E9
|is_a=EFO:0002091;;FF:0000002;;FF:0000083;;FF:0000210
+
|is_a=EFO:0002091;;FF:0000083
 +
|is_obsolete=
 +
|library_id=CNhs10879
 +
|library_id_phase_based=2:CNhs10879
 +
|microRNAs=
 +
|microRNAs_nn=
 +
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11251
 +
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.GCCAAT.11251
 +
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11251
 +
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.GCCAAT.11251
 
|name=Keratinocyte - oral, donor1
 
|name=Keratinocyte - oral, donor1
 
|namespace=FANTOM5
 
|namespace=FANTOM5
Line 42: Line 65:
 
|profile_cagescan=,,,
 
|profile_cagescan=,,,
 
|profile_hcage=CNhs10879,LSID703,release008,COMPLETED
 
|profile_hcage=CNhs10879,LSID703,release008,COMPLETED
|profile_rnaseq=,,,
+
|profile_rnaseq=
 
|profile_srnaseq=SRhi10004,,,
 
|profile_srnaseq=SRhi10004,,,
 +
|refex=http://refex.dbcls.jp/genelist.php?lang
 +
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 +
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|rna_box=116
 
|rna_box=116
 
|rna_catalog_number=Sciencell(2615)
 
|rna_catalog_number=Sciencell(2615)
Line 54: Line 80:
 
|rna_rin=
 
|rna_rin=
 
|rna_sample_type=total RNA
 
|rna_sample_type=total RNA
|rna_tube_id=116E9
+
|rna_tube_id=1.16E+11
 
|rna_weight_ug=10
 
|rna_weight_ug=10
 +
|rnaseq_library_id=SRhi10004.GCCAAT
 
|sample_age=
 
|sample_age=
 +
|sample_category=primary cells
 
|sample_cell_catalog=N/A
 
|sample_cell_catalog=N/A
 
|sample_cell_line=
 
|sample_cell_line=
Line 77: Line 105:
 
|sample_tissue=gum
 
|sample_tissue=gum
 
|top_motifs=TP53:2.69456184943;ZEB1:1.72384883866;SNAI1..3:1.70737853239;PDX1:1.5869321367;VSX1,2:1.48393428583;TBX4,5:1.43410414629;NKX2-3_NKX2-5:1.21932619636;FOXM1:1.21110601555;ADNP_IRX_SIX_ZHX:1.13283959608;RBPJ:1.07956380335;NKX2-2,8:0.997365186281;ONECUT1,2:0.944340415567;ARID5B:0.909742065383;XCPE1{core}:0.85427814023;MYOD1:0.830413071074;POU1F1:0.822783834441;TEAD1:0.795846956382;SP1:0.780732550079;HAND1,2:0.685988839396;FOXQ1:0.672033361332;NKX3-2:0.654446036074;ZNF148:0.613559236759;STAT5{A,B}:0.609518121153;CDC5L:0.604192716679;TEF:0.596885637299;KLF4:0.580857704392;PPARG:0.563338244127;ZNF238:0.549217326225;ZNF423:0.525603586922;NKX2-1,4:0.497858532209;NFIL3:0.482345250399;FOS_FOS{B,L1}_JUN{B,D}:0.468763270474;PAX4:0.463749243301;FOXO1,3,4:0.461538851242;GCM1,2:0.431011575608;CEBPA,B_DDIT3:0.415601085539;CRX:0.398222875694;MAZ:0.390272827243;SMAD1..7,9:0.365264711849;ZIC1..3:0.36488756495;BACH2:0.349199399577;GLI1..3:0.343328413562;PAX1,9:0.338300431973;CDX1,2,4:0.305965890829;LMO2:0.301372212789;SOX17:0.290982529337;TBP:0.278115355674;UFEwm:0.268116430293;GTF2A1,2:0.263834052262;NANOG:0.261568852544;E2F1..5:0.244349497878;POU2F1..3:0.237723897538;MTF1:0.234255410747;SOX2:0.227793546701;HOX{A4,D4}:0.209320422983;bHLH_family:0.203776737857;FOSL2:0.198513224903;PAX6:0.194763138776;POU6F1:0.167267606205;ZNF143:0.138268343163;EBF1:0.135597185789;NKX6-1,2:0.13326924591;PAX5:0.104824137382;GFI1B:0.104127152996;T:0.101093071375;TFCP2:0.0950406166602;RREB1:0.0930723735669;NRF1:0.092904450405;TLX1..3_NFIC{dimer}:0.0769008773757;IRF7:0.0491358399689;NR6A1:0.0451165661037;ZNF384:0.036659635442;YY1:0.0246045751023;TFAP2{A,C}:0.0220371276209;FOXD3:0.0204118626557;HSF1,2:0.0186452947088;ELK1,4_GABP{A,B1}:0.0137188816974;TFDP1:0.0136048227947;RXR{A,B,G}:0.0074526559462;NR5A1,2:0.00586159951042;HMGA1,2:0.00264100365495;GFI1:-0.00110965107748;HLF:-0.0180678110516;TOPORS:-0.0241233106579;LHX3,4:-0.0276404062273;HNF4A_NR2F1,2:-0.0280494063183;NFY{A,B,C}:-0.0305060575448;GZF1:-0.0322238578756;FOX{I1,J2}:-0.0418549412794;EN1,2:-0.0468969619059;NR3C1:-0.0641519561068;REST:-0.0691313393253;MED-1{core}:-0.0722219170829;PAX8:-0.0734340624386;FOXN1:-0.0753658725926;NFIX:-0.0811633817264;MYB:-0.086800043358;AR:-0.0872869174696;IKZF1:-0.0889940517887;NKX3-1:-0.0983536244721;GTF2I:-0.099427146394;POU5F1:-0.109215772552;NFE2:-0.110460797853;HOX{A5,B5}:-0.136514523919;HNF1A:-0.138799519661;HMX1:-0.143417145714;STAT1,3:-0.153431412846;GATA4:-0.156461984721;HOXA9_MEIS1:-0.157173781892;ELF1,2,4:-0.16028702493;NFKB1_REL_RELA:-0.170702461901;OCT4_SOX2{dimer}:-0.177797314506;POU3F1..4:-0.181679788829;FOXL1:-0.191626321097;ZBTB6:-0.200589653137;ZFP161:-0.20468954294;LEF1_TCF7_TCF7L1,2:-0.218818152326;AIRE:-0.226252689306;MYBL2:-0.25075916011;EP300:-0.253944036284;RFX2..5_RFXANK_RFXAP:-0.2615076815;ALX1:-0.265530336427;AHR_ARNT_ARNT2:-0.265766258053;EGR1..3:-0.267506831768;MTE{core}:-0.296796036082;TFAP4:-0.303979002659;EVI1:-0.317633638817;PAX2:-0.318663118643;NHLH1,2:-0.323203736427;MYFfamily:-0.330377763676;NR1H4:-0.344315634993;FOXP3:-0.360843260114;ATF2:-0.374871747091;ETS1,2:-0.379208979229;SOX{8,9,10}:-0.385440552449;IKZF2:-0.388983041358;RFX1:-0.392740920239;SRF:-0.396301522617;MZF1:-0.406471145397;SPIB:-0.417557607999;HIF1A:-0.423115346653;HIC1:-0.425187573366;PBX1:-0.43388992128;SPI1:-0.447408829928;SPZ1:-0.448565270116;GATA6:-0.455559107084;RUNX1..3:-0.458236001028;CUX2:-0.461231582617;ALX4:-0.464946950098;BPTF:-0.466020726078;CREB1:-0.470637862526;FOX{F1,F2,J1}:-0.478926280102;FOX{D1,D2}:-0.497769723102;PITX1..3:-0.500481970794;SOX5:-0.527892235221;ESR1:-0.539803252168;PATZ1:-0.543938758191;JUN:-0.549813333762;PRDM1:-0.552376647687;IRF1,2:-0.556346752513;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.558113402302;HES1:-0.558158598201;NFE2L2:-0.565581455711;ATF5_CREB3:-0.571526596412;FOXP1:-0.573693855688;ZBTB16:-0.575535627304;ATF4:-0.583598695152;HBP1_HMGB_SSRP1_UBTF:-0.625366118987;NFATC1..3:-0.641324121541;HOX{A6,A7,B6,B7}:-0.648037724033;MEF2{A,B,C,D}:-0.654703739089;TLX2:-0.686099157081;RORA:-0.733388776201;FOXA2:-0.746882520089;STAT2,4,6:-0.756747424594;TFAP2B:-0.759434115124;DBP:-0.794416681646;PRRX1,2:-0.818034304473;TGIF1:-0.82398344642;ESRRA:-0.86890653817;BREu{core}:-0.89035524528;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.926247071292;NANOG{mouse}:-0.927340136508;MAFB:-1.0113652261;TAL1_TCF{3,4,12}:-1.01741415649;DMAP1_NCOR{1,2}_SMARC:-1.08248671461;PAX3,7:-1.12848069655;RXRA_VDR{dimer}:-1.1939288208;NFE2L1:-1.23520467857;SREBF1,2:-1.30088665277;XBP1:-1.3535159768;ATF6:-1.57970262549
 
|top_motifs=TP53:2.69456184943;ZEB1:1.72384883866;SNAI1..3:1.70737853239;PDX1:1.5869321367;VSX1,2:1.48393428583;TBX4,5:1.43410414629;NKX2-3_NKX2-5:1.21932619636;FOXM1:1.21110601555;ADNP_IRX_SIX_ZHX:1.13283959608;RBPJ:1.07956380335;NKX2-2,8:0.997365186281;ONECUT1,2:0.944340415567;ARID5B:0.909742065383;XCPE1{core}:0.85427814023;MYOD1:0.830413071074;POU1F1:0.822783834441;TEAD1:0.795846956382;SP1:0.780732550079;HAND1,2:0.685988839396;FOXQ1:0.672033361332;NKX3-2:0.654446036074;ZNF148:0.613559236759;STAT5{A,B}:0.609518121153;CDC5L:0.604192716679;TEF:0.596885637299;KLF4:0.580857704392;PPARG:0.563338244127;ZNF238:0.549217326225;ZNF423:0.525603586922;NKX2-1,4:0.497858532209;NFIL3:0.482345250399;FOS_FOS{B,L1}_JUN{B,D}:0.468763270474;PAX4:0.463749243301;FOXO1,3,4:0.461538851242;GCM1,2:0.431011575608;CEBPA,B_DDIT3:0.415601085539;CRX:0.398222875694;MAZ:0.390272827243;SMAD1..7,9:0.365264711849;ZIC1..3:0.36488756495;BACH2:0.349199399577;GLI1..3:0.343328413562;PAX1,9:0.338300431973;CDX1,2,4:0.305965890829;LMO2:0.301372212789;SOX17:0.290982529337;TBP:0.278115355674;UFEwm:0.268116430293;GTF2A1,2:0.263834052262;NANOG:0.261568852544;E2F1..5:0.244349497878;POU2F1..3:0.237723897538;MTF1:0.234255410747;SOX2:0.227793546701;HOX{A4,D4}:0.209320422983;bHLH_family:0.203776737857;FOSL2:0.198513224903;PAX6:0.194763138776;POU6F1:0.167267606205;ZNF143:0.138268343163;EBF1:0.135597185789;NKX6-1,2:0.13326924591;PAX5:0.104824137382;GFI1B:0.104127152996;T:0.101093071375;TFCP2:0.0950406166602;RREB1:0.0930723735669;NRF1:0.092904450405;TLX1..3_NFIC{dimer}:0.0769008773757;IRF7:0.0491358399689;NR6A1:0.0451165661037;ZNF384:0.036659635442;YY1:0.0246045751023;TFAP2{A,C}:0.0220371276209;FOXD3:0.0204118626557;HSF1,2:0.0186452947088;ELK1,4_GABP{A,B1}:0.0137188816974;TFDP1:0.0136048227947;RXR{A,B,G}:0.0074526559462;NR5A1,2:0.00586159951042;HMGA1,2:0.00264100365495;GFI1:-0.00110965107748;HLF:-0.0180678110516;TOPORS:-0.0241233106579;LHX3,4:-0.0276404062273;HNF4A_NR2F1,2:-0.0280494063183;NFY{A,B,C}:-0.0305060575448;GZF1:-0.0322238578756;FOX{I1,J2}:-0.0418549412794;EN1,2:-0.0468969619059;NR3C1:-0.0641519561068;REST:-0.0691313393253;MED-1{core}:-0.0722219170829;PAX8:-0.0734340624386;FOXN1:-0.0753658725926;NFIX:-0.0811633817264;MYB:-0.086800043358;AR:-0.0872869174696;IKZF1:-0.0889940517887;NKX3-1:-0.0983536244721;GTF2I:-0.099427146394;POU5F1:-0.109215772552;NFE2:-0.110460797853;HOX{A5,B5}:-0.136514523919;HNF1A:-0.138799519661;HMX1:-0.143417145714;STAT1,3:-0.153431412846;GATA4:-0.156461984721;HOXA9_MEIS1:-0.157173781892;ELF1,2,4:-0.16028702493;NFKB1_REL_RELA:-0.170702461901;OCT4_SOX2{dimer}:-0.177797314506;POU3F1..4:-0.181679788829;FOXL1:-0.191626321097;ZBTB6:-0.200589653137;ZFP161:-0.20468954294;LEF1_TCF7_TCF7L1,2:-0.218818152326;AIRE:-0.226252689306;MYBL2:-0.25075916011;EP300:-0.253944036284;RFX2..5_RFXANK_RFXAP:-0.2615076815;ALX1:-0.265530336427;AHR_ARNT_ARNT2:-0.265766258053;EGR1..3:-0.267506831768;MTE{core}:-0.296796036082;TFAP4:-0.303979002659;EVI1:-0.317633638817;PAX2:-0.318663118643;NHLH1,2:-0.323203736427;MYFfamily:-0.330377763676;NR1H4:-0.344315634993;FOXP3:-0.360843260114;ATF2:-0.374871747091;ETS1,2:-0.379208979229;SOX{8,9,10}:-0.385440552449;IKZF2:-0.388983041358;RFX1:-0.392740920239;SRF:-0.396301522617;MZF1:-0.406471145397;SPIB:-0.417557607999;HIF1A:-0.423115346653;HIC1:-0.425187573366;PBX1:-0.43388992128;SPI1:-0.447408829928;SPZ1:-0.448565270116;GATA6:-0.455559107084;RUNX1..3:-0.458236001028;CUX2:-0.461231582617;ALX4:-0.464946950098;BPTF:-0.466020726078;CREB1:-0.470637862526;FOX{F1,F2,J1}:-0.478926280102;FOX{D1,D2}:-0.497769723102;PITX1..3:-0.500481970794;SOX5:-0.527892235221;ESR1:-0.539803252168;PATZ1:-0.543938758191;JUN:-0.549813333762;PRDM1:-0.552376647687;IRF1,2:-0.556346752513;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.558113402302;HES1:-0.558158598201;NFE2L2:-0.565581455711;ATF5_CREB3:-0.571526596412;FOXP1:-0.573693855688;ZBTB16:-0.575535627304;ATF4:-0.583598695152;HBP1_HMGB_SSRP1_UBTF:-0.625366118987;NFATC1..3:-0.641324121541;HOX{A6,A7,B6,B7}:-0.648037724033;MEF2{A,B,C,D}:-0.654703739089;TLX2:-0.686099157081;RORA:-0.733388776201;FOXA2:-0.746882520089;STAT2,4,6:-0.756747424594;TFAP2B:-0.759434115124;DBP:-0.794416681646;PRRX1,2:-0.818034304473;TGIF1:-0.82398344642;ESRRA:-0.86890653817;BREu{core}:-0.89035524528;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.926247071292;NANOG{mouse}:-0.927340136508;MAFB:-1.0113652261;TAL1_TCF{3,4,12}:-1.01741415649;DMAP1_NCOR{1,2}_SMARC:-1.08248671461;PAX3,7:-1.12848069655;RXRA_VDR{dimer}:-1.1939288208;NFE2L1:-1.23520467857;SREBF1,2:-1.30088665277;XBP1:-1.3535159768;ATF6:-1.57970262549
 +
|xref=
 +
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11251-116E9;search_select_hide=table117:FF:11251-116E9
 
}}
 
}}

Latest revision as of 07:28, 3 June 2020

Name:Keratinocyte - oral, donor1
Species:Human (Homo sapiens)
Library ID:CNhs10879
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuegum
dev stageNA
sexunknown
ageNA
cell typekeratinocyte
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberlot:4853
catalog numberSciencell(2615)
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004992
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10879 CAGE DRX008315 DRR009187
Accession ID Hg19

Library idBAMCTSS
CNhs10879 DRZ000612 DRZ001997
Accession ID Hg38

Library idBAMCTSS
CNhs10879 DRZ011962 DRZ013347
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004992
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10004.GCCAAT sRNA-Seq DRX037036 DRR041402
Accession ID Hg19

Library idBAMCTSS
SRhi10004.GCCAAT DRZ007044


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis--0.115
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.187
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.263
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.106
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural--0.00492
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19--0.0536
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle--0.157
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0.0385
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed--0.197
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.823
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte--0.263
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal1.024
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.325
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus--0.0484
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0159
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8--0.0239
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.426
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0503
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.13
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.137
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs10879

Jaspar motif P-value
MA0002.2 0.0139
MA0003.1 0.899
MA0004.1 0.197
MA0006.1 0.15
MA0007.1 0.924
MA0009.1 0.271
MA0014.1 0.392
MA0017.1 0.751
MA0018.2 6.5816e-5
MA0019.1 0.915
MA0024.1 0.361
MA0025.1 0.331
MA0027.1 0.413
MA0028.1 0.405
MA0029.1 0.399
MA0030.1 0.169
MA0031.1 0.345
MA0035.2 0.584
MA0038.1 0.583
MA0039.2 0.0022
MA0040.1 0.0467
MA0041.1 0.619
MA0042.1 0.483
MA0043.1 0.0468
MA0046.1 0.752
MA0047.2 0.657
MA0048.1 0.842
MA0050.1 4.25605e-7
MA0051.1 0.00178
MA0052.1 0.029
MA0055.1 0.0213
MA0057.1 0.265
MA0058.1 0.0218
MA0059.1 0.938
MA0060.1 0.727
MA0061.1 0.603
MA0062.2 0.0949
MA0065.2 0.221
MA0066.1 0.271
MA0067.1 0.00491
MA0068.1 0.00731
MA0069.1 0.161
MA0070.1 0.887
MA0071.1 0.101
MA0072.1 0.114
MA0073.1 0.716
MA0074.1 0.663
MA0076.1 0.488
MA0077.1 0.659
MA0078.1 0.859
MA0079.2 0.319
MA0080.2 5.64225e-6
MA0081.1 0.0281
MA0083.1 0.0802
MA0084.1 0.351
MA0087.1 0.797
MA0088.1 0.296
MA0090.1 0.00148
MA0091.1 0.1
MA0092.1 0.43
MA0093.1 0.125
MA0099.2 3.58414e-4
MA0100.1 0.943
MA0101.1 0.13
MA0102.2 0.445
MA0103.1 3.66438e-7
MA0104.2 0.68
MA0105.1 0.629
MA0106.1 4.35335e-13
MA0107.1 0.091
MA0108.2 0.0817
MA0111.1 0.435
MA0112.2 0.725
MA0113.1 0.683
MA0114.1 0.224
MA0115.1 0.47
MA0116.1 0.423
MA0117.1 0.274
MA0119.1 0.295
MA0122.1 0.857
MA0124.1 0.693
MA0125.1 0.0299
MA0131.1 0.388
MA0135.1 0.284
MA0136.1 0.00455
MA0137.2 0.179
MA0138.2 0.153
MA0139.1 0.702
MA0140.1 0.263
MA0141.1 0.236
MA0142.1 0.22
MA0143.1 0.243
MA0144.1 0.834
MA0145.1 0.0492
MA0146.1 0.186
MA0147.1 0.493
MA0148.1 0.18
MA0149.1 0.26
MA0150.1 0.0783
MA0152.1 0.988
MA0153.1 0.984
MA0154.1 0.448
MA0155.1 0.738
MA0156.1 0.0148
MA0157.1 0.165
MA0159.1 0.663
MA0160.1 0.0877
MA0162.1 0.355
MA0163.1 0.796
MA0164.1 0.992
MA0258.1 0.222
MA0259.1 0.866



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs10879

Novel motif P-value
1 0.837
10 0.58
100 0.938
101 0.445
102 0.197
103 0.115
104 0.905
105 0.0495
106 0.959
107 0.0384
108 0.735
109 0.00478
11 0.487
110 0.18
111 0.358
112 0.874
113 0.815
114 0.717
115 0.603
116 0.419
117 0.329
118 0.528
119 0.981
12 0.792
120 0.00202
121 0.819
122 0.397
123 0.162
124 0.207
125 0.675
126 0.339
127 0.602
128 0.982
129 0.0573
13 0.0247
130 0.341
131 0.443
132 0.0926
133 5.39545e-4
134 0.0751
135 0.789
136 0.0121
137 0.144
138 0.941
139 0.0503
14 0.919
140 0.49
141 0.45
142 0.226
143 0.325
144 0.407
145 0.252
146 0.0288
147 0.369
148 0.0798
149 0.673
15 0.199
150 0.532
151 0.578
152 0.212
153 0.382
154 0.515
155 0.942
156 0.957
157 0.987
158 0.133
159 0.361
16 0.111
160 0.0506
161 0.231
162 0.14
163 0.806
164 0.883
165 0.911
166 0.446
167 0.16
168 0.461
169 0.194
17 0.221
18 0.916
19 0.605
2 0.0829
20 0.936
21 0.937
22 0.479
23 0.7
24 0.00153
25 0.949
26 0.745
27 0.62
28 0.608
29 0.339
3 0.539
30 0.0454
31 0.997
32 0.105
33 0.0914
34 0.728
35 0.125
36 0.45
37 0.832
38 0.418
39 0.255
4 0.84
40 0.159
41 0.115
42 0.489
43 0.948
44 0.405
45 0.0444
46 0.788
47 0.398
48 0.173
49 0.22
5 0.467
50 0.351
51 0.675
52 0.544
53 0.435
54 0.979
55 0.653
56 0.481
57 0.438
58 0.825
59 0.556
6 0.122
60 0.809
61 0.934
62 0.724
63 0.335
64 0.626
65 0.738
66 0.423
67 0.316
68 0.129
69 0.743
7 0.51
70 0.2
71 0.904
72 0.527
73 0.153
74 0.0293
75 0.242
76 0.782
77 0.0414
78 0.0335
79 0.248
8 0.512
80 0.106
81 0.322
82 0.786
83 0.276
84 0.637
85 0.747
86 0.259
87 0.21
88 0.572
89 0.267
9 0.753
90 0.925
91 0.989
92 0.707
93 0.882
94 0.831
95 0.146
96 0.328
97 0.867
98 0.75
99 0.0382



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs10879


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000325 (stuff accumulating cell)
0000240 (stratified squamous epithelial cell)
0000311 (keratin accumulating cell)
0000079 (stratified epithelial cell)
0000237 (keratinizing barrier epithelial cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002336 (buccal mucosa cell)
0002251 (epithelial cell of alimentary canal)
0002261 (endothelial cell of viscerocranial mucosa)
0002170 (keratinized cell of the oral mucosa)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000033 (head)
0001007 (digestive system)
0000344 (mucosa)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004923 (organ component layer)
0001444 (subdivision of head)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003729 (mouth mucosa)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000083 (human oral mucosa keratinocyte sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

CL:0000357 (stratified epithelial stem cell)
CL:0000223 (endodermal cell)
CL:0000114 (surface ectodermal cell)
CL:0000221 (ectodermal cell)