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{{f5samples
 
{{f5samples
 +
|DRA_sample_Accession=CAGE@SAMD00004983
 +
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004983
 +
|accession_numbers=CAGE;DRX008254;DRR009126;DRZ000551;DRZ001936;DRZ011901;DRZ013286
 +
|accession_numbers_RNASeq=sRNA-Seq;DRX036992;DRR041358;DRZ007000
 
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0010317,UBERON:0002067,UBERON:0002416
 
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0010317,UBERON:0002067,UBERON:0002416
 
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620,CL:0002551
 
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620,CL:0002551
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|created_by=
 
|created_by=
 
|creation_date=
 
|creation_date=
|datafreeze_phase=1
+
|data_phase=2
 +
|datafreeze_phase=2
 
|def=
 
|def=
 
|expression_enrichment_score=chr6:34204921..34204939,+!p3@HMGA1!1.83!1859.85!HMGA1;;chr1:170632285..170632309,+!p1@PRRX1!1.62!45.89!PRRX1;;chr2:239756671..239756732,+!p1@TWIST2!1.55!107.70!TWIST2;;chr1:170633348..170633399,+!p2@PRRX1!1.50!40.89!PRRX1;;chr2:239756739..239756755,+!p2@TWIST2!1.47!48.07!TWIST2;;chr12:66218836..66218888,+!p1@HMGA2!1.46!247.86!HMGA2;;chr3:12330560..12330579,+!p1@PPARG!1.45!30.90!PPARG;;chr2:19558373..19558392,-!p1@OSR1!1.37!60.87!OSR1;;chr6:134210243..134210257,+!p1@TCF21!1.35!21.23!TCF21;;chr12:66218255..66218304,+!p3@HMGA2!1.32!52.44!HMGA2;;chr15:57511609..57511651,+!p2@TCF12!1.30!31.22!TCF12;;chr12:66218923..66218934,+!p14@HMGA2!1.30!18.73!HMGA2;;chr19:46801639..46801699,+!p1@HIF3A!1.30!18.73!HIF3A;;chr12:66218598..66218645,+!p2@HMGA2!1.29!84.60!HMGA2;;chr8:25902876..25902936,-!p1@EBF2!1.27!17.48!EBF2;;chr12:66218904..66218913,+!p11@HMGA2!1.24!16.23!HMGA2;;chr1:170633262..170633285,+!p3@PRRX1!1.23!18.42!PRRX1;;chr15:42749722..42749739,-!p2@ZFP106!1.20!26.53!ZFP106;;chr11:47279504..47279563,+!p1@NR1H3!1.19!33.09!NR1H3;;chr11:65687362..65687436,+!p3@DRAP1!1.17!62.12!DRAP1;;chr3:12329397..12329433,+!p2@PPARG!1.15!29.66!PPARG;;chr17:59477233..59477263,+!p1@TBX2!1.14!39.64!TBX2;;chr1:170632250..170632277,+!p7@PRRX1!1.14!12.80!PRRX1;;chr1:170632959..170632987,+!p4@PRRX1!1.12!13.42!PRRX1;;chr5:2751762..2751784,-!p1@IRX2!1.11!11.86!IRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.10!15.30!PRRX2;;chr2:102091566..102091581,-!p1@RFX8!1.08!10.93!RFX8;;chr8:128748308..128748324,+!p2@MYC!1.07!301.23!MYC;;chr11:65686802..65686818,+!p6@DRAP1!1.07!18.73!DRAP1;;chr11:65686732..65686756,+!p2@DRAP1!1.06!44.95!DRAP1;;chr3:141105705..141105770,+!p4@ZBTB38!1.05!12.49!ZBTB38;;chr1:170632723..170632739,+!p8@PRRX1!1.03!9.68!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!1.00!9.05!PRRX1;;chr8:49833948..49833973,-!p2@SNAI2!0.99!56.50!SNAI2;;chr2:223163706..223163730,-!p1@PAX3!0.99!8.74!PAX3;;chr3:138665937..138665968,-!p1@FOXL2!0.96!8.12!FOXL2;;chr6:85474299..85474324,-!p1@TBX18!0.95!14.36!TBX18;;chr12:66218443..66218461,+!p8@HMGA2!0.94!9.99!HMGA2;;chr12:85673977..85674015,+!p1@ALX1!0.94!7.80!ALX1;;chr11:65667884..65667895,-!p2@FOSL1!0.93!29.97!FOSL1;;chr7:19157248..19157268,-!p1@TWIST1!0.93!21.54!TWIST1;;chr4:26322267..26322334,+!p3@RBPJ!0.92!18.11!RBPJ;;chr5:133450365..133450444,+!p1@TCF7!0.88!31.53!TCF7;;chr1:170632477..170632506,+!p6@PRRX1!0.88!6.56!PRRX1;;chr12:66358080..66358094,+!p15@HMGA2!0.88!6.56!HMGA2;;chr3:157823517..157823562,-!p1@SHOX2!0.87!6.87!SHOX2;;chr15:57511589..57511608,+!p4@TCF12!0.86!6.24!TCF12;;chr3:12329358..12329393,+!p3@PPARG!0.85!15.61!PPARG;;chr20:55204351..55204377,+!p1@TFAP2C!0.85!7.80!TFAP2C;;chr6:34204973..34204990,+!p4@HMGA1!0.84!83.66!HMGA1;;chr12:66357214..66357233,+!p13@HMGA2!0.84!5.93!HMGA2;;chr12:53614115..53614154,-!p1@RARG!0.83!33.09!RARG;;chr11:46299199..46299233,+!p1@CREB3L1!0.82!30.90!CREB3L1;;chr2:200323414..200323455,-!p1@SATB2!0.81!12.17!SATB2;;chr12:66218212..66218244,+!p5@HMGA2!0.81!8.12!HMGA2;;chr11:65687222..65687240,+!p7@DRAP1!0.81!7.18!DRAP1;;chr1:170632137..170632172,+!p10@PRRX1!0.80!5.31!PRRX1;;chr2:119604456..119604501,-!p2@EN1!0.80!5.31!EN1;;chr16:86600426..86600441,+!p1@FOXC2!0.79!13.42!FOXC2;;chr7:19157043..19157088,-!p2@TWIST1!0.78!13.42!TWIST1;;chr15:96874145..96874166,+!p7@NR2F2!0.78!10.30!NR2F2;;chr2:102091144..102091183,-!p2@RFX8!0.78!4.99!RFX8;;chr2:175199675..175199688,+!p1@SP9!0.78!4.99!SP9;;chr12:115122318..115122331,-!p2@TBX3!0.78!4.99!TBX3;;chr7:14029283..14029311,-!p1@ETV1!0.77!28.72!ETV1;;chr6:34205372..34205412,+!p5@HMGA1!0.77!26.85!HMGA1;;chr20:42543441..42543497,+!p1@TOX2!0.77!23.72!TOX2;;chr12:66218183..66218209,+!p4@HMGA2!0.76!9.68!HMGA2;;chr1:158985493..158985535,+!p4@IFI16!0.76!7.49!IFI16;;chr17:59477275..59477286,+!p3@TBX2!0.76!6.56!TBX2;;chr6:34204672..34204692,+!p1@HMGA1!0.75!578.43!HMGA1;;chr19:13134772..13134822,+!p2@NFIX!0.75!7.18!NFIX;;chr12:66218573..66218596,+!p7@HMGA2!0.75!7.18!HMGA2;;chr11:47279248..47279264,+!p3@NR1H3!0.75!5.31!NR1H3;;chr2:176994408..176994492,+!p1@HOXD8!0.75!4.68!HOXD8;;chr17:59477403..59477414,+!p4@TBX2!0.75!4.68!TBX2;;chr17:59477197..59477212,+!p2@TBX2!0.74!8.12!TBX2;;chr2:200322654..200322707,-!p2@SATB2!0.74!6.87!SATB2;;chr8:49833978..49833996,-!p1@SNAI2!0.73!100.52!SNAI2;;chr17:7492684..7492778,-!p2@SOX15!0.73!9.99!SOX15;;chr12:66218469..66218477,+!p16@HMGA2!0.73!4.37!HMGA2;;chrY:21906594..21906622,-!p1@KDM5D!0.73!4.37!KDM5D;;chr5:174151553..174151610,+!p1@MSX2!0.70!7.18!MSX2;;chr12:66218378..66218401,+!p6@HMGA2!0.70!6.56!HMGA2;;chr5:158526459..158526481,-!p2@EBF1!0.70!5.62!EBF1;;chr12:85674018..85674039,+!p3@ALX1!0.70!4.06!ALX1;;chr1:170632683..170632696,+!p12@PRRX1!0.70!4.06!PRRX1;;chr1:170633100..170633112,+!p19@PRRX1!0.70!4.06!PRRX1;;chr5:158526917..158526932,-!p1@EBF1!0.69!10.61!EBF1;;chr17:1959369..1959388,+!p2@HIC1!0.68!10.93!HIC1;;chr14:24837368..24837401,+!p1@NFATC4!0.68!9.68!NFATC4;;chr11:65687243..65687276,+!p8@DRAP1!0.68!5.31!DRAP1;;chr10:131762504..131762555,-!p1@EBF3!0.68!3.75!EBF3;;chr11:65688877..65688891,+!p13@DRAP1!0.68!3.75!DRAP1;;chr1:170632439..170632465,+!p11@PRRX1!0.68!3.75!PRRX1;;chr1:170632762..170632786,+!p13@PRRX1!0.68!3.75!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.68!3.75!PRRX1;;chr9:16705069..16705086,-!p3@BNC2!0.68!3.75!BNC2;;chr9:132427883..132427951,+!p2@PRRX2!0.68!3.75!PRRX2;;chr11:65667846..65667868,-!p1@FOSL1!0.67!112.38!FOSL1;;chr12:115121962..115121987,-!p1@TBX3!0.67!35.59!TBX3;;chr5:321810..321877,+!p1@AHRR!0.67!13.11!AHRR;;chr17:41622765..41622821,-!p2@ETV4!0.67!5.93!ETV4;;chr8:128750654..128750793,+!p3@MYC!0.66!16.54!MYC;;chr11:46299539..46299620,+!p2@CREB3L1!0.66!6.56!CREB3L1;;chr8:128747661..128747703,+!p6@MYC!0.65!4.99!MYC;;chr16:86612320..86612394,+!p1@FOXL1!0.65!3.43!FOXL1;;chr3:138665969..138665993,-!p2@FOXL2!0.65!3.43!FOXL2;;chr20:42543506..42543549,+!p2@TOX2!0.63!8.74!TOX2;;chr5:43067636..43067674,+!p6@ZNF131!0.63!4.68!ZNF131;;chr8:128747757..128747800,+!p7@MYC!0.63!4.68!MYC;;chr8:93074803..93074845,-!p1@RUNX1T1!0.62!3.12!RUNX1T1;;chr1:170632115..170632136,+!p9@PRRX1!0.62!3.12!PRRX1;;chr11:46299443..46299459,+!p4@CREB3L1!0.62!3.12!CREB3L1;;chr12:66218420..66218439,+!p12@HMGA2!0.62!3.12!HMGA2;;chrY:2803415..2803468,+!p1@ZFY!0.62!3.12!ZFY;;chr2:177016272..177016286,+!p2@HOXD4!0.62!3.12!HOXD4;;chr2:191906489..191906517,-!p6@STAT4!0.62!3.12!STAT4;;chr2:19558327..19558334,-!p2@OSR1!0.62!3.12!OSR1;;chr16:86600870..86600921,+!p2@FOXC2!0.62!3.12!FOXC2;;chr4:26322373..26322393,+!p4@RBPJ!0.60!4.68!RBPJ;;chr6:1389789..1389821,+!p1@FOXF2!0.60!4.37!FOXF2;;chr17:41622925..41622976,-!p3@ETV4!0.59!4.68!ETV4;;chr14:21566731..21566836,-!p1@ZNF219!0.58!36.83!ZNF219;;chr21:30671690..30671762,+!p2@BACH1!0.58!11.24!BACH1;;chr2:242576431..242576458,-!p3@THAP4!0.58!7.80!THAP4;;chr15:96869255..96869291,+!p6@NR2F2!0.58!5.62!NR2F2;;chr15:96869114..96869160,+!p11@NR2F2!0.58!4.06!NR2F2;;chr2:102091478..102091490,-!p3@RFX8!0.58!2.81!RFX8;;chr2:177016336..177016350,+!p1@HOXD4!0.58!2.81!HOXD4;;chr12:115122303..115122314,-!p6@TBX3!0.58!2.81!TBX3;;chr19:9609272..9609297,-!p1@ZNF560!0.58!2.81!ZNF560;;chr1:119530493..119530572,-!p1@TBX15!0.58!2.81!TBX15;;chr1:170632028..170632043,+!p20@PRRX1!0.58!2.81!PRRX1;;chr5:2751785..2751808,-!p2@IRX2!0.58!2.81!IRX2;;chr11:65687158..65687216,+!p4@DRAP1!0.57!18.73!DRAP1;;chr7:100076723..100076737,-!p3@TSC22D4!0.56!4.68!TSC22D4;;chr20:39946361..39946379,-!p2@ZHX3!0.55!9.05!ZHX3;;chr15:96874244..96874259,+!p5@NR2F2!0.55!7.18!NR2F2;;chr8:128750555..128750609,+!p5@MYC!0.55!5.93!MYC;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.55!2.81!GLIS1;;chr12:96588143..96588185,+!p1@ELK3!0.54!38.08!ELK3;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!0.54!2.50!POU3F3;;chr2:175199697..175199706,+!p2@SP9!0.54!2.50!SP9;;chr3:21792631..21792665,-!p3@ZNF385D!0.54!2.50!ZNF385D;;chr4:26322673..26322684,+!p11@RBPJ!0.54!2.50!RBPJ;;chr7:44143925..44143970,+!p1@AEBP1!0.53!68.68!AEBP1;;chr1:158979792..158979814,+!p2@IFI16!0.53!29.34!IFI16;;chr5:72744594..72744609,-!p1@FOXD1!0.53!13.42!FOXD1;;chr20:48807456..48807475,+!p3@CEBPB!0.53!5.31!CEBPB;;chr12:10875351..10875422,-!p4@CSDA!0.53!5.31!CSDA;;chr7:113726357..113726443,+!p1@FOXP2!0.53!4.68!FOXP2;;chr3:141121847..141121868,+!p5@ZBTB38!0.53!4.06!ZBTB38;;chr15:96874216..96874236,+!p13@NR2F2!0.52!4.06!NR2F2;;chr20:48807648..48807671,+!p9@CEBPB!0.52!3.75!CEBPB;;chr10:31607702..31607755,+!p3@ZEB1!0.52!2.81!ZEB1;;chr12:96588219..96588263,+!p2@ELK3!0.51!20.91!ELK3;;chr17:61919985..61920012,-!p3@SMARCD2!0.51!6.56!SMARCD2;;chr2:113993052..113993097,-!p2@PAX8!0.51!5.93!PAX8;;chr7:4721870..4721878,+!p2@FOXK1!0.51!3.75!FOXK1;;chr3:178789522..178789564,-!p2@ZMAT3!0.50!20.60!ZMAT3;;chr6:85473156..85473210,-!p2@TBX18!0.50!2.81!TBX18;;chr8:93074848..93074871,-!p3@RUNX1T1!0.50!2.19!RUNX1T1;;chr3:12329464..12329472,+!p6@PPARG!0.50!2.19!PPARG;;chr12:53613935..53613947,-!p8@RARG!0.50!2.19!RARG;;chr1:170632310..170632321,+!p15@PRRX1!0.50!2.19!PRRX1;;chr1:170632907..170632916,+!p22@PRRX1!0.50!2.19!PRRX1;;chr1:170633194..170633205,+!p18@PRRX1!0.50!2.19!PRRX1;;chr1:170633225..170633230,+!p25@PRRX1!0.50!2.19!PRRX1;;chr20:48807351..48807384,+!p1@CEBPB!0.49!289.37!CEBPB;;chr3:37217736..37217753,-!p2@LRRFIP2!0.49!11.24!LRRFIP2;;chr19:42636586..42636607,-!p1@POU2F2!0.49!7.18!POU2F2;;chr10:77161133..77161176,-!p3@ZNF503!0.48!5.31!ZNF503;;chr7:44143978..44143989,+!p2@AEBP1!0.48!4.37!AEBP1;;chr9:16870710..16870763,-!p1@BNC2!0.48!4.06!BNC2;;chr17:41623009..41623053,-!p4@ETV4!0.48!3.75!ETV4;;chr10:31288398..31288455,-!p2@ZNF438!0.48!2.50!ZNF438;;chr5:72743793..72743855,-!p4@FOXD1!0.48!2.50!FOXD1;;chr5:72744445..72744466,-!p2@FOXD1!0.47!3.75!FOXD1;;chr15:96876966..96877017,+!p12@NR2F2!0.47!3.12!NR2F2;;chr1:158985469..158985489,+!p7@IFI16!0.47!2.50!IFI16;;chr11:120107344..120107351,+!p1@POU2F3!0.47!2.50!POU2F3;;chr14:61116183..61116208,-!p1@SIX1!0.46!9.36!SIX1;;chr12:26277956..26277980,-!p1@BHLHE41!0.46!8.74!BHLHE41;;chr20:6748325..6748352,+!p1@BMP2!0.46!3.12!BMP2;;chr9:16870659..16870675,-!p2@BNC2!0.46!2.50!BNC2;;chr15:67418119..67418162,+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|expression_enrichment_score=chr6:34204921..34204939,+!p3@HMGA1!1.83!1859.85!HMGA1;;chr1:170632285..170632309,+!p1@PRRX1!1.62!45.89!PRRX1;;chr2:239756671..239756732,+!p1@TWIST2!1.55!107.70!TWIST2;;chr1:170633348..170633399,+!p2@PRRX1!1.50!40.89!PRRX1;;chr2:239756739..239756755,+!p2@TWIST2!1.47!48.07!TWIST2;;chr12:66218836..66218888,+!p1@HMGA2!1.46!247.86!HMGA2;;chr3:12330560..12330579,+!p1@PPARG!1.45!30.90!PPARG;;chr2:19558373..19558392,-!p1@OSR1!1.37!60.87!OSR1;;chr6:134210243..134210257,+!p1@TCF21!1.35!21.23!TCF21;;chr12:66218255..66218304,+!p3@HMGA2!1.32!52.44!HMGA2;;chr15:57511609..57511651,+!p2@TCF12!1.30!31.22!TCF12;;chr12:66218923..66218934,+!p14@HMGA2!1.30!18.73!HMGA2;;chr19:46801639..46801699,+!p1@HIF3A!1.30!18.73!HIF3A;;chr12:66218598..66218645,+!p2@HMGA2!1.29!84.60!HMGA2;;chr8:25902876..25902936,-!p1@EBF2!1.27!17.48!EBF2;;chr12:66218904..66218913,+!p11@HMGA2!1.24!16.23!HMGA2;;chr1:170633262..170633285,+!p3@PRRX1!1.23!18.42!PRRX1;;chr15:42749722..42749739,-!p2@ZFP106!1.20!26.53!ZFP106;;chr11:47279504..47279563,+!p1@NR1H3!1.19!33.09!NR1H3;;chr11:65687362..65687436,+!p3@DRAP1!1.17!62.12!DRAP1;;chr3:12329397..12329433,+!p2@PPARG!1.15!29.66!PPARG;;chr17:59477233..59477263,+!p1@TBX2!1.14!39.64!TBX2;;chr1:170632250..170632277,+!p7@PRRX1!1.14!12.80!PRRX1;;chr1:170632959..170632987,+!p4@PRRX1!1.12!13.42!PRRX1;;chr5:2751762..2751784,-!p1@IRX2!1.11!11.86!IRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.10!15.30!PRRX2;;chr2:102091566..102091581,-!p1@RFX8!1.08!10.93!RFX8;;chr8:128748308..128748324,+!p2@MYC!1.07!301.23!MYC;;chr11:65686802..65686818,+!p6@DRAP1!1.07!18.73!DRAP1;;chr11:65686732..65686756,+!p2@DRAP1!1.06!44.95!DRAP1;;chr3:141105705..141105770,+!p4@ZBTB38!1.05!12.49!ZBTB38;;chr1:170632723..170632739,+!p8@PRRX1!1.03!9.68!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!1.00!9.05!PRRX1;;chr8:49833948..49833973,-!p2@SNAI2!0.99!56.50!SNAI2;;chr2:223163706..223163730,-!p1@PAX3!0.99!8.74!PAX3;;chr3:138665937..138665968,-!p1@FOXL2!0.96!8.12!FOXL2;;chr6:85474299..85474324,-!p1@TBX18!0.95!14.36!TBX18;;chr12:66218443..66218461,+!p8@HMGA2!0.94!9.99!HMGA2;;chr12:85673977..85674015,+!p1@ALX1!0.94!7.80!ALX1;;chr11:65667884..65667895,-!p2@FOSL1!0.93!29.97!FOSL1;;chr7:19157248..19157268,-!p1@TWIST1!0.93!21.54!TWIST1;;chr4:26322267..26322334,+!p3@RBPJ!0.92!18.11!RBPJ;;chr5:133450365..133450444,+!p1@TCF7!0.88!31.53!TCF7;;chr1:170632477..170632506,+!p6@PRRX1!0.88!6.56!PRRX1;;chr12:66358080..66358094,+!p15@HMGA2!0.88!6.56!HMGA2;;chr3:157823517..157823562,-!p1@SHOX2!0.87!6.87!SHOX2;;chr15:57511589..57511608,+!p4@TCF12!0.86!6.24!TCF12;;chr3:12329358..12329393,+!p3@PPARG!0.85!15.61!PPARG;;chr20:55204351..55204377,+!p1@TFAP2C!0.85!7.80!TFAP2C;;chr6:34204973..34204990,+!p4@HMGA1!0.84!83.66!HMGA1;;chr12:66357214..66357233,+!p13@HMGA2!0.84!5.93!HMGA2;;chr12:53614115..53614154,-!p1@RARG!0.83!33.09!RARG;;chr11:46299199..46299233,+!p1@CREB3L1!0.82!30.90!CREB3L1;;chr2:200323414..200323455,-!p1@SATB2!0.81!12.17!SATB2;;chr12:66218212..66218244,+!p5@HMGA2!0.81!8.12!HMGA2;;chr11:65687222..65687240,+!p7@DRAP1!0.81!7.18!DRAP1;;chr1:170632137..170632172,+!p10@PRRX1!0.80!5.31!PRRX1;;chr2:119604456..119604501,-!p2@EN1!0.80!5.31!EN1;;chr16:86600426..86600441,+!p1@FOXC2!0.79!13.42!FOXC2;;chr7:19157043..19157088,-!p2@TWIST1!0.78!13.42!TWIST1;;chr15:96874145..96874166,+!p7@NR2F2!0.78!10.30!NR2F2;;chr2:102091144..102091183,-!p2@RFX8!0.78!4.99!RFX8;;chr2:175199675..175199688,+!p1@SP9!0.78!4.99!SP9;;chr12:115122318..115122331,-!p2@TBX3!0.78!4.99!TBX3;;chr7:14029283..14029311,-!p1@ETV1!0.77!28.72!ETV1;;chr6:34205372..34205412,+!p5@HMGA1!0.77!26.85!HMGA1;;chr20:42543441..42543497,+!p1@TOX2!0.77!23.72!TOX2;;chr12:66218183..66218209,+!p4@HMGA2!0.76!9.68!HMGA2;;chr1:158985493..158985535,+!p4@IFI16!0.76!7.49!IFI16;;chr17:59477275..59477286,+!p3@TBX2!0.76!6.56!TBX2;;chr6:34204672..34204692,+!p1@HMGA1!0.75!578.43!HMGA1;;chr19:13134772..13134822,+!p2@NFIX!0.75!7.18!NFIX;;chr12:66218573..66218596,+!p7@HMGA2!0.75!7.18!HMGA2;;chr11:47279248..47279264,+!p3@NR1H3!0.75!5.31!NR1H3;;chr2:176994408..176994492,+!p1@HOXD8!0.75!4.68!HOXD8;;chr17:59477403..59477414,+!p4@TBX2!0.75!4.68!TBX2;;chr17:59477197..59477212,+!p2@TBX2!0.74!8.12!TBX2;;chr2:200322654..200322707,-!p2@SATB2!0.74!6.87!SATB2;;chr8:49833978..49833996,-!p1@SNAI2!0.73!100.52!SNAI2;;chr17:7492684..7492778,-!p2@SOX15!0.73!9.99!SOX15;;chr12:66218469..66218477,+!p16@HMGA2!0.73!4.37!HMGA2;;chrY:21906594..21906622,-!p1@KDM5D!0.73!4.37!KDM5D;;chr5:174151553..174151610,+!p1@MSX2!0.70!7.18!MSX2;;chr12:66218378..66218401,+!p6@HMGA2!0.70!6.56!HMGA2;;chr5:158526459..158526481,-!p2@EBF1!0.70!5.62!EBF1;;chr12:85674018..85674039,+!p3@ALX1!0.70!4.06!ALX1;;chr1:170632683..170632696,+!p12@PRRX1!0.70!4.06!PRRX1;;chr1:170633100..170633112,+!p19@PRRX1!0.70!4.06!PRRX1;;chr5:158526917..158526932,-!p1@EBF1!0.69!10.61!EBF1;;chr17:1959369..1959388,+!p2@HIC1!0.68!10.93!HIC1;;chr14:24837368..24837401,+!p1@NFATC4!0.68!9.68!NFATC4;;chr11:65687243..65687276,+!p8@DRAP1!0.68!5.31!DRAP1;;chr10:131762504..131762555,-!p1@EBF3!0.68!3.75!EBF3;;chr11:65688877..65688891,+!p13@DRAP1!0.68!3.75!DRAP1;;chr1:170632439..170632465,+!p11@PRRX1!0.68!3.75!PRRX1;;chr1:170632762..170632786,+!p13@PRRX1!0.68!3.75!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.68!3.75!PRRX1;;chr9:16705069..16705086,-!p3@BNC2!0.68!3.75!BNC2;;chr9:132427883..132427951,+!p2@PRRX2!0.68!3.75!PRRX2;;chr11:65667846..65667868,-!p1@FOSL1!0.67!112.38!FOSL1;;chr12:115121962..115121987,-!p1@TBX3!0.67!35.59!TBX3;;chr5:321810..321877,+!p1@AHRR!0.67!13.11!AHRR;;chr17:41622765..41622821,-!p2@ETV4!0.67!5.93!ETV4;;chr8:128750654..128750793,+!p3@MYC!0.66!16.54!MYC;;chr11:46299539..46299620,+!p2@CREB3L1!0.66!6.56!CREB3L1;;chr8:128747661..128747703,+!p6@MYC!0.65!4.99!MYC;;chr16:86612320..86612394,+!p1@FOXL1!0.65!3.43!FOXL1;;chr3:138665969..138665993,-!p2@FOXL2!0.65!3.43!FOXL2;;chr20:42543506..42543549,+!p2@TOX2!0.63!8.74!TOX2;;chr5:43067636..43067674,+!p6@ZNF131!0.63!4.68!ZNF131;;chr8:128747757..128747800,+!p7@MYC!0.63!4.68!MYC;;chr8:93074803..93074845,-!p1@RUNX1T1!0.62!3.12!RUNX1T1;;chr1:170632115..170632136,+!p9@PRRX1!0.62!3.12!PRRX1;;chr11:46299443..46299459,+!p4@CREB3L1!0.62!3.12!CREB3L1;;chr12:66218420..66218439,+!p12@HMGA2!0.62!3.12!HMGA2;;chrY:2803415..2803468,+!p1@ZFY!0.62!3.12!ZFY;;chr2:177016272..177016286,+!p2@HOXD4!0.62!3.12!HOXD4;;chr2:191906489..191906517,-!p6@STAT4!0.62!3.12!STAT4;;chr2:19558327..19558334,-!p2@OSR1!0.62!3.12!OSR1;;chr16:86600870..86600921,+!p2@FOXC2!0.62!3.12!FOXC2;;chr4:26322373..26322393,+!p4@RBPJ!0.60!4.68!RBPJ;;chr6:1389789..1389821,+!p1@FOXF2!0.60!4.37!FOXF2;;chr17:41622925..41622976,-!p3@ETV4!0.59!4.68!ETV4;;chr14:21566731..21566836,-!p1@ZNF219!0.58!36.83!ZNF219;;chr21:30671690..30671762,+!p2@BACH1!0.58!11.24!BACH1;;chr2:242576431..242576458,-!p3@THAP4!0.58!7.80!THAP4;;chr15:96869255..96869291,+!p6@NR2F2!0.58!5.62!NR2F2;;chr15:96869114..96869160,+!p11@NR2F2!0.58!4.06!NR2F2;;chr2:102091478..102091490,-!p3@RFX8!0.58!2.81!RFX8;;chr2:177016336..177016350,+!p1@HOXD4!0.58!2.81!HOXD4;;chr12:115122303..115122314,-!p6@TBX3!0.58!2.81!TBX3;;chr19:9609272..9609297,-!p1@ZNF560!0.58!2.81!ZNF560;;chr1:119530493..119530572,-!p1@TBX15!0.58!2.81!TBX15;;chr1:170632028..170632043,+!p20@PRRX1!0.58!2.81!PRRX1;;chr5:2751785..2751808,-!p2@IRX2!0.58!2.81!IRX2;;chr11:65687158..65687216,+!p4@DRAP1!0.57!18.73!DRAP1;;chr7:100076723..100076737,-!p3@TSC22D4!0.56!4.68!TSC22D4;;chr20:39946361..39946379,-!p2@ZHX3!0.55!9.05!ZHX3;;chr15:96874244..96874259,+!p5@NR2F2!0.55!7.18!NR2F2;;chr8:128750555..128750609,+!p5@MYC!0.55!5.93!MYC;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.55!2.81!GLIS1;;chr12:96588143..96588185,+!p1@ELK3!0.54!38.08!ELK3;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!0.54!2.50!POU3F3;;chr2:175199697..175199706,+!p2@SP9!0.54!2.50!SP9;;chr3:21792631..21792665,-!p3@ZNF385D!0.54!2.50!ZNF385D;;chr4:26322673..26322684,+!p11@RBPJ!0.54!2.50!RBPJ;;chr7:44143925..44143970,+!p1@AEBP1!0.53!68.68!AEBP1;;chr1:158979792..158979814,+!p2@IFI16!0.53!29.34!IFI16;;chr5:72744594..72744609,-!p1@FOXD1!0.53!13.42!FOXD1;;chr20:48807456..48807475,+!p3@CEBPB!0.53!5.31!CEBPB;;chr12:10875351..10875422,-!p4@CSDA!0.53!5.31!CSDA;;chr7:113726357..113726443,+!p1@FOXP2!0.53!4.68!FOXP2;;chr3:141121847..141121868,+!p5@ZBTB38!0.53!4.06!ZBTB38;;chr15:96874216..96874236,+!p13@NR2F2!0.52!4.06!NR2F2;;chr20:48807648..48807671,+!p9@CEBPB!0.52!3.75!CEBPB;;chr10:31607702..31607755,+!p3@ZEB1!0.52!2.81!ZEB1;;chr12:96588219..96588263,+!p2@ELK3!0.51!20.91!ELK3;;chr17:61919985..61920012,-!p3@SMARCD2!0.51!6.56!SMARCD2;;chr2:113993052..113993097,-!p2@PAX8!0.51!5.93!PAX8;;chr7:4721870..4721878,+!p2@FOXK1!0.51!3.75!FOXK1;;chr3:178789522..178789564,-!p2@ZMAT3!0.50!20.60!ZMAT3;;chr6:85473156..85473210,-!p2@TBX18!0.50!2.81!TBX18;;chr8:93074848..93074871,-!p3@RUNX1T1!0.50!2.19!RUNX1T1;;chr3:12329464..12329472,+!p6@PPARG!0.50!2.19!PPARG;;chr12:53613935..53613947,-!p8@RARG!0.50!2.19!RARG;;chr1:170632310..170632321,+!p15@PRRX1!0.50!2.19!PRRX1;;chr1:170632907..170632916,+!p22@PRRX1!0.50!2.19!PRRX1;;chr1:170633194..170633205,+!p18@PRRX1!0.50!2.19!PRRX1;;chr1:170633225..170633230,+!p25@PRRX1!0.50!2.19!PRRX1;;chr20:48807351..48807384,+!p1@CEBPB!0.49!289.37!CEBPB;;chr3:37217736..37217753,-!p2@LRRFIP2!0.49!11.24!LRRFIP2;;chr19:42636586..42636607,-!p1@POU2F2!0.49!7.18!POU2F2;;chr10:77161133..77161176,-!p3@ZNF503!0.48!5.31!ZNF503;;chr7:44143978..44143989,+!p2@AEBP1!0.48!4.37!AEBP1;;chr9:16870710..16870763,-!p1@BNC2!0.48!4.06!BNC2;;chr17:41623009..41623053,-!p4@ETV4!0.48!3.75!ETV4;;chr10:31288398..31288455,-!p2@ZNF438!0.48!2.50!ZNF438;;chr5:72743793..72743855,-!p4@FOXD1!0.48!2.50!FOXD1;;chr5:72744445..72744466,-!p2@FOXD1!0.47!3.75!FOXD1;;chr15:96876966..96877017,+!p12@NR2F2!0.47!3.12!NR2F2;;chr1:158985469..158985489,+!p7@IFI16!0.47!2.50!IFI16;;chr11:120107344..120107351,+!p1@POU2F3!0.47!2.50!POU2F3;;chr14:61116183..61116208,-!p1@SIX1!0.46!9.36!SIX1;;chr12:26277956..26277980,-!p1@BHLHE41!0.46!8.74!BHLHE41;;chr20:6748325..6748352,+!p1@BMP2!0.46!3.12!BMP2;;chr9:16870659..16870675,-!p2@BNC2!0.46!2.50!BNC2;;chr15:67418119..67418162,+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 +
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002551;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002620;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002067;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416
 
|ffid_belonging_in_development=CL:0000134
 
|ffid_belonging_in_development=CL:0000134
 
|fonse_cell_line=
 
|fonse_cell_line=
Line 38: Line 44:
 
|fonse_treatment_closure=
 
|fonse_treatment_closure=
 
|has_quality=
 
|has_quality=
 +
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor1.CNhs12499.11269-116G9.hg19.nobarcode.bam
 +
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor1.CNhs12499.11269-116G9.hg19.ctss.bed.gz
 +
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor1.CNhs12499.11269-116G9.hg19.nobarcode.rdna.fa.gz
 +
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor1.CNhs12499.11269-116G9.hg38.nobarcode.bam
 +
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor1.CNhs12499.11269-116G9.hg38.nobarcode.ctss.bed.gz
 
|id=FF:11269-116G9
 
|id=FF:11269-116G9
 
|is_a=EFO:0002091;;FF:0000062
 
|is_a=EFO:0002091;;FF:0000062
 
|is_obsolete=
 
|is_obsolete=
 +
|library_id=CNhs12499
 +
|library_id_phase_based=2:CNhs12499
 +
|microRNAs=
 +
|microRNAs_nn=
 +
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11269
 +
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.ACAGTG.11269
 +
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11269
 +
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.ACAGTG.11269
 
|name=Fibroblast - Dermal, donor1
 
|name=Fibroblast - Dermal, donor1
 
|namespace=FANTOM5
 
|namespace=FANTOM5
Line 46: Line 65:
 
|profile_cagescan=,,,
 
|profile_cagescan=,,,
 
|profile_hcage=CNhs12499,LSID916,release011,COMPLETED
 
|profile_hcage=CNhs12499,LSID916,release011,COMPLETED
|profile_rnaseq=,,,
+
|profile_rnaseq=
 
|profile_srnaseq=SRhi10002,,,
 
|profile_srnaseq=SRhi10002,,,
 +
|refex=http://refex.dbcls.jp/genelist.php?lang
 
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|sample_cell_line=
Line 84: Line 106:
 
|top_motifs=HES1:2.11083212596;RXR{A,B,G}:1.61269873736;ZNF238:1.32416122089;ALX4:1.13753819276;GZF1:1.04961176281;NKX2-2,8:1.04883911393;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.972370136283;bHLH_family:0.957561190054;UFEwm:0.892978799115;TFAP4:0.864813873253;NKX2-1,4:0.793520812912;ESR1:0.779080871877;EN1,2:0.725746678829;HOX{A4,D4}:0.723022038402;ONECUT1,2:0.701213457475;ESRRA:0.681624116801;FOXQ1:0.658839901472;ZNF423:0.644470867989;PAX1,9:0.580391818702;TAL1_TCF{3,4,12}:0.57501667806;STAT5{A,B}:0.568562035384;LHX3,4:0.566489617145;HOX{A5,B5}:0.562834272913;TFCP2:0.527818462418;NR3C1:0.493829865003;KLF4:0.460815773327;GATA4:0.437548696546;TP53:0.425881000942;XBP1:0.390314879212;HOX{A6,A7,B6,B7}:0.381263946001;POU3F1..4:0.366549509143;SPZ1:0.356386685738;PAX8:0.352241557415;MTF1:0.348455348816;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.326511133271;YY1:0.318738579977;AR:0.312280468253;GFI1B:0.3063684942;ZIC1..3:0.28038629613;FOXL1:0.275826106238;TEAD1:0.275089702161;BACH2:0.270561989167;AHR_ARNT_ARNT2:0.263668658643;IKZF1:0.261005700479;HIF1A:0.255060320541;ZBTB6:0.215774009374;GTF2I:0.214704357946;TLX1..3_NFIC{dimer}:0.205821329944;FOS_FOS{B,L1}_JUN{B,D}:0.205338988495;NFE2L1:0.204301769221;NFIX:0.163120732213;HNF4A_NR2F1,2:0.156815086914;EBF1:0.142768630756;NFATC1..3:0.142492829578;ARID5B:0.126800461924;TFAP2{A,C}:0.12227261655;TBX4,5:0.120987302786;TOPORS:0.099106916076;TEF:0.0958922090387;NFE2L2:0.0807937904123;NHLH1,2:0.0796802605863;SRF:0.0641129726121;GTF2A1,2:0.0583649260243;HLF:0.0501337375423;ZNF143:0.0228778932563;GCM1,2:0.0190112845782;FOSL2:0.000436455006812;CEBPA,B_DDIT3:0.000226327048326;ATF6:-0.000158015049217;LEF1_TCF7_TCF7L1,2:-0.00359952869003;MYFfamily:-0.0160519802647;MYBL2:-0.0166670699942;HNF1A:-0.0192249000668;HSF1,2:-0.0238782083604;TFDP1:-0.0291393272186;EGR1..3:-0.0328519978732;GLI1..3:-0.0364176783424;NANOG{mouse}:-0.0447359581004;ELK1,4_GABP{A,B1}:-0.0569932980294;ADNP_IRX_SIX_ZHX:-0.0624653864024;NKX3-2:-0.062571957888;FOXD3:-0.0646720605007;PAX5:-0.0735683597203;PRDM1:-0.0748478428191;SOX17:-0.0750176645413;PPARG:-0.0790887983725;REST:-0.0852656584808;NRF1:-0.0896913743003;POU2F1..3:-0.149102836974;PDX1:-0.149483587861;HAND1,2:-0.15278443315;RFX1:-0.154948145766;AIRE:-0.162787863865;PRRX1,2:-0.163404836578;NR5A1,2:-0.165482741865;TFAP2B:-0.175878839651;TBP:-0.18177151054;NKX6-1,2:-0.19167805922;NFE2:-0.204799558663;EVI1:-0.211676258509;MTE{core}:-0.217446962373;HIC1:-0.230800975603;HMX1:-0.235996688417;MEF2{A,B,C,D}:-0.236939468028;CRX:-0.238424203154;SREBF1,2:-0.241800542236;CREB1:-0.247573502739;PATZ1:-0.248302714995;PAX3,7:-0.25107818412;ZFP161:-0.267525124756;MZF1:-0.269311832891;MYB:-0.289278547601;NANOG:-0.29382699485;PBX1:-0.296837314307;MED-1{core}:-0.308039031741;NFIL3:-0.308468530617;RREB1:-0.324186198853;NFKB1_REL_RELA:-0.347490580808;NR6A1:-0.3479172227;TGIF1:-0.357422310243;NR1H4:-0.364661759435;SPIB:-0.391985797332;ELF1,2,4:-0.394259984891;MAZ:-0.395286529341;RUNX1..3:-0.401611425114;SPI1:-0.401729657303;STAT2,4,6:-0.404333944848;PAX6:-0.407847198601;NKX3-1:-0.408503874899;ZBTB16:-0.40896695589;ZNF148:-0.413919536974;MAFB:-0.417652244006;PAX4:-0.425620145626;DMAP1_NCOR{1,2}_SMARC:-0.434257642542;CDX1,2,4:-0.445625683115;ALX1:-0.461466393771;GFI1:-0.463642134141;FOXM1:-0.468182466787;ETS1,2:-0.475636447003;HOXA9_MEIS1:-0.480073992062;XCPE1{core}:-0.492219339433;FOX{I1,J2}:-0.498267446251;RFX2..5_RFXANK_RFXAP:-0.499099162677;HBP1_HMGB_SSRP1_UBTF:-0.518984656641;GATA6:-0.526691739463;MYOD1:-0.526949058336;FOXO1,3,4:-0.535294490009;T:-0.539793980987;NKX2-3_NKX2-5:-0.541453033525;E2F1..5:-0.568431464949;FOX{D1,D2}:-0.571754169537;SP1:-0.575243714465;ATF2:-0.580215809019;OCT4_SOX2{dimer}:-0.580286291519;ATF5_CREB3:-0.599390144914;DBP:-0.606910518487;JUN:-0.6179569364;IRF1,2:-0.627828885429;RBPJ:-0.634887369872;TLX2:-0.639016092382;CDC5L:-0.657996410046;SMAD1..7,9:-0.667262452871;LMO2:-0.675407737826;ZEB1:-0.694478991673;PAX2:-0.718309035855;POU1F1:-0.752607709459;CUX2:-0.755133816312;FOXP3:-0.773686403357;VSX1,2:-0.775679776725;NFY{A,B,C}:-0.787341923238;STAT1,3:-0.799991411775;RORA:-0.813635584899;BREu{core}:-0.816962051167;FOXA2:-0.835992730523;SNAI1..3:-0.85019574476;IRF7:-0.885219717791;SOX5:-0.896149243481;ZNF384:-0.926158110831;POU6F1:-0.936108859276;BPTF:-0.942893330069;ATF4:-0.953710736175;SOX2:-1.07690831016;FOXP1:-1.08375560946;SOX{8,9,10}:-1.12125742714;RXRA_VDR{dimer}:-1.15944077142;HMGA1,2:-1.23889920443;IKZF2:-1.26084919126;FOX{F1,F2,J1}:-1.26442920234;POU5F1:-1.28687389507;FOXN1:-1.3403045937;PITX1..3:-1.41995085405;EP300:-1.47196617723
 
|top_motifs=HES1:2.11083212596;RXR{A,B,G}:1.61269873736;ZNF238:1.32416122089;ALX4:1.13753819276;GZF1:1.04961176281;NKX2-2,8:1.04883911393;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.972370136283;bHLH_family:0.957561190054;UFEwm:0.892978799115;TFAP4:0.864813873253;NKX2-1,4:0.793520812912;ESR1:0.779080871877;EN1,2:0.725746678829;HOX{A4,D4}:0.723022038402;ONECUT1,2:0.701213457475;ESRRA:0.681624116801;FOXQ1:0.658839901472;ZNF423:0.644470867989;PAX1,9:0.580391818702;TAL1_TCF{3,4,12}:0.57501667806;STAT5{A,B}:0.568562035384;LHX3,4:0.566489617145;HOX{A5,B5}:0.562834272913;TFCP2:0.527818462418;NR3C1:0.493829865003;KLF4:0.460815773327;GATA4:0.437548696546;TP53:0.425881000942;XBP1:0.390314879212;HOX{A6,A7,B6,B7}:0.381263946001;POU3F1..4:0.366549509143;SPZ1:0.356386685738;PAX8:0.352241557415;MTF1:0.348455348816;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.326511133271;YY1:0.318738579977;AR:0.312280468253;GFI1B:0.3063684942;ZIC1..3:0.28038629613;FOXL1:0.275826106238;TEAD1:0.275089702161;BACH2:0.270561989167;AHR_ARNT_ARNT2:0.263668658643;IKZF1:0.261005700479;HIF1A:0.255060320541;ZBTB6:0.215774009374;GTF2I:0.214704357946;TLX1..3_NFIC{dimer}:0.205821329944;FOS_FOS{B,L1}_JUN{B,D}:0.205338988495;NFE2L1:0.204301769221;NFIX:0.163120732213;HNF4A_NR2F1,2:0.156815086914;EBF1:0.142768630756;NFATC1..3:0.142492829578;ARID5B:0.126800461924;TFAP2{A,C}:0.12227261655;TBX4,5:0.120987302786;TOPORS:0.099106916076;TEF:0.0958922090387;NFE2L2:0.0807937904123;NHLH1,2:0.0796802605863;SRF:0.0641129726121;GTF2A1,2:0.0583649260243;HLF:0.0501337375423;ZNF143:0.0228778932563;GCM1,2:0.0190112845782;FOSL2:0.000436455006812;CEBPA,B_DDIT3:0.000226327048326;ATF6:-0.000158015049217;LEF1_TCF7_TCF7L1,2:-0.00359952869003;MYFfamily:-0.0160519802647;MYBL2:-0.0166670699942;HNF1A:-0.0192249000668;HSF1,2:-0.0238782083604;TFDP1:-0.0291393272186;EGR1..3:-0.0328519978732;GLI1..3:-0.0364176783424;NANOG{mouse}:-0.0447359581004;ELK1,4_GABP{A,B1}:-0.0569932980294;ADNP_IRX_SIX_ZHX:-0.0624653864024;NKX3-2:-0.062571957888;FOXD3:-0.0646720605007;PAX5:-0.0735683597203;PRDM1:-0.0748478428191;SOX17:-0.0750176645413;PPARG:-0.0790887983725;REST:-0.0852656584808;NRF1:-0.0896913743003;POU2F1..3:-0.149102836974;PDX1:-0.149483587861;HAND1,2:-0.15278443315;RFX1:-0.154948145766;AIRE:-0.162787863865;PRRX1,2:-0.163404836578;NR5A1,2:-0.165482741865;TFAP2B:-0.175878839651;TBP:-0.18177151054;NKX6-1,2:-0.19167805922;NFE2:-0.204799558663;EVI1:-0.211676258509;MTE{core}:-0.217446962373;HIC1:-0.230800975603;HMX1:-0.235996688417;MEF2{A,B,C,D}:-0.236939468028;CRX:-0.238424203154;SREBF1,2:-0.241800542236;CREB1:-0.247573502739;PATZ1:-0.248302714995;PAX3,7:-0.25107818412;ZFP161:-0.267525124756;MZF1:-0.269311832891;MYB:-0.289278547601;NANOG:-0.29382699485;PBX1:-0.296837314307;MED-1{core}:-0.308039031741;NFIL3:-0.308468530617;RREB1:-0.324186198853;NFKB1_REL_RELA:-0.347490580808;NR6A1:-0.3479172227;TGIF1:-0.357422310243;NR1H4:-0.364661759435;SPIB:-0.391985797332;ELF1,2,4:-0.394259984891;MAZ:-0.395286529341;RUNX1..3:-0.401611425114;SPI1:-0.401729657303;STAT2,4,6:-0.404333944848;PAX6:-0.407847198601;NKX3-1:-0.408503874899;ZBTB16:-0.40896695589;ZNF148:-0.413919536974;MAFB:-0.417652244006;PAX4:-0.425620145626;DMAP1_NCOR{1,2}_SMARC:-0.434257642542;CDX1,2,4:-0.445625683115;ALX1:-0.461466393771;GFI1:-0.463642134141;FOXM1:-0.468182466787;ETS1,2:-0.475636447003;HOXA9_MEIS1:-0.480073992062;XCPE1{core}:-0.492219339433;FOX{I1,J2}:-0.498267446251;RFX2..5_RFXANK_RFXAP:-0.499099162677;HBP1_HMGB_SSRP1_UBTF:-0.518984656641;GATA6:-0.526691739463;MYOD1:-0.526949058336;FOXO1,3,4:-0.535294490009;T:-0.539793980987;NKX2-3_NKX2-5:-0.541453033525;E2F1..5:-0.568431464949;FOX{D1,D2}:-0.571754169537;SP1:-0.575243714465;ATF2:-0.580215809019;OCT4_SOX2{dimer}:-0.580286291519;ATF5_CREB3:-0.599390144914;DBP:-0.606910518487;JUN:-0.6179569364;IRF1,2:-0.627828885429;RBPJ:-0.634887369872;TLX2:-0.639016092382;CDC5L:-0.657996410046;SMAD1..7,9:-0.667262452871;LMO2:-0.675407737826;ZEB1:-0.694478991673;PAX2:-0.718309035855;POU1F1:-0.752607709459;CUX2:-0.755133816312;FOXP3:-0.773686403357;VSX1,2:-0.775679776725;NFY{A,B,C}:-0.787341923238;STAT1,3:-0.799991411775;RORA:-0.813635584899;BREu{core}:-0.816962051167;FOXA2:-0.835992730523;SNAI1..3:-0.85019574476;IRF7:-0.885219717791;SOX5:-0.896149243481;ZNF384:-0.926158110831;POU6F1:-0.936108859276;BPTF:-0.942893330069;ATF4:-0.953710736175;SOX2:-1.07690831016;FOXP1:-1.08375560946;SOX{8,9,10}:-1.12125742714;RXRA_VDR{dimer}:-1.15944077142;HMGA1,2:-1.23889920443;IKZF2:-1.26084919126;FOX{F1,F2,J1}:-1.26442920234;POU5F1:-1.28687389507;FOXN1:-1.3403045937;PITX1..3:-1.41995085405;EP300:-1.47196617723
 
|xref=
 
|xref=
 +
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11269-116G9;search_select_hide=table117:FF:11269-116G9
 
}}
 
}}

Latest revision as of 07:29, 3 June 2020

Name:Fibroblast - Dermal, donor1
Species:Human (Homo sapiens)
Library ID:CNhs12499
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stage71 years old adult
sexmale
age71
cell typefibroblast
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1378
catalog numberCA106-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004983
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12499 CAGE DRX008254 DRR009126
Accession ID Hg19

Library idBAMCTSS
CNhs12499 DRZ000551 DRZ001936
Accession ID Hg38

Library idBAMCTSS
CNhs12499 DRZ011901 DRZ013286
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004983
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10002.ACAGTG sRNA-Seq DRX036992 DRR041358
Accession ID Hg19

Library idBAMCTSS
SRhi10002.ACAGTG DRZ007000


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0654
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma--0.0954
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural--0.011
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19--0.226
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle--0.0964
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.608
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed--0.0965
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte--0.065
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus--0.194
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.114
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8--0.0385
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0309
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small--0.127
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0799
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature--0.0333
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.37
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.581
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.118
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.836
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs12499

Jaspar motif P-value
MA0002.2 0.794
MA0003.1 0.199
MA0004.1 0.117
MA0006.1 0.965
MA0007.1 0.028
MA0009.1 0.289
MA0014.1 0.998
MA0017.1 0.407
MA0018.2 5.54934e-7
MA0019.1 0.748
MA0024.1 1.16689e-4
MA0025.1 0.00332
MA0027.1 0.864
MA0028.1 0.59
MA0029.1 0.308
MA0030.1 0.0679
MA0031.1 0.22
MA0035.2 0.188
MA0038.1 3.71776e-4
MA0039.2 0.23
MA0040.1 0.854
MA0041.1 0.559
MA0042.1 0.722
MA0043.1 1.16004e-7
MA0046.1 0.602
MA0047.2 0.219
MA0048.1 0.352
MA0050.1 9.94855e-6
MA0051.1 0.0088
MA0052.1 0.931
MA0055.1 0.4
MA0057.1 0.179
MA0058.1 0.131
MA0059.1 0.0108
MA0060.1 6.40247e-7
MA0061.1 0.535
MA0062.2 0.00315
MA0065.2 0.0861
MA0066.1 0.0286
MA0067.1 0.0177
MA0068.1 0.16
MA0069.1 0.374
MA0070.1 0.937
MA0071.1 0.282
MA0072.1 0.949
MA0073.1 0.768
MA0074.1 0.202
MA0076.1 0.138
MA0077.1 0.525
MA0078.1 0.613
MA0079.2 0.971
MA0080.2 3.64887e-5
MA0081.1 0.132
MA0083.1 0.434
MA0084.1 0.704
MA0087.1 0.636
MA0088.1 0.00295
MA0090.1 0.0765
MA0091.1 0.112
MA0092.1 0.597
MA0093.1 0.177
MA0099.2 2.04336e-4
MA0100.1 0.949
MA0101.1 0.0178
MA0102.2 0.0827
MA0103.1 0.0956
MA0104.2 0.0225
MA0105.1 0.138
MA0106.1 0.0133
MA0107.1 0.00517
MA0108.2 0.625
MA0111.1 0.926
MA0112.2 0.00318
MA0113.1 0.0918
MA0114.1 0.206
MA0115.1 0.878
MA0116.1 0.121
MA0117.1 0.164
MA0119.1 0.0759
MA0122.1 0.675
MA0124.1 0.351
MA0125.1 0.169
MA0131.1 0.0652
MA0135.1 0.384
MA0136.1 9.36107e-5
MA0137.2 0.124
MA0138.2 0.612
MA0139.1 0.618
MA0140.1 0.295
MA0141.1 0.00915
MA0142.1 0.336
MA0143.1 0.36
MA0144.1 0.984
MA0145.1 0.529
MA0146.1 0.215
MA0147.1 0.0109
MA0148.1 0.288
MA0149.1 0.178
MA0150.1 0.974
MA0152.1 0.312
MA0153.1 0.86
MA0154.1 0.376
MA0155.1 0.629
MA0156.1 2.2634e-4
MA0157.1 0.703
MA0159.1 0.223
MA0160.1 0.389
MA0162.1 0.115
MA0163.1 6.66194e-4
MA0164.1 0.598
MA0258.1 0.202
MA0259.1 0.178



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs12499

Novel motif P-value
1 0.224
10 0.162
100 0.607
101 0.782
102 0.732
103 0.0788
104 0.573
105 0.394
106 0.458
107 0.61
108 0.0945
109 0.0362
11 0.0664
110 0.0627
111 0.0696
112 0.392
113 0.0248
114 0.083
115 0.428
116 0.0394
117 0.245
118 0.218
119 0.946
12 0.663
120 0.0172
121 0.808
122 0.301
123 0.0142
124 0.559
125 0.515
126 0.544
127 0.413
128 0.286
129 0.748
13 0.616
130 0.696
131 0.911
132 0.436
133 0.387
134 0.154
135 0.762
136 0.651
137 0.183
138 0.81
139 0.827
14 0.235
140 0.771
141 0.704
142 0.937
143 0.063
144 0.386
145 0.297
146 0.495
147 0.0594
148 0.48
149 0.0539
15 0.444
150 0.347
151 0.587
152 0.102
153 0.386
154 0.52
155 0.0632
156 0.327
157 0.986
158 0.0683
159 0.286
16 0.0629
160 0.0666
161 0.614
162 0.579
163 0.883
164 0.112
165 0.821
166 0.641
167 0.853
168 0.13
169 0.0149
17 0.215
18 0.0566
19 0.0258
2 0.488
20 0.855
21 0.0709
22 0.074
23 0.586
24 0.373
25 0.693
26 0.059
27 0.116
28 0.146
29 0.0604
3 0.342
30 0.677
31 0.514
32 0.00862
33 0.426
34 0.872
35 0.459
36 0.324
37 0.0357
38 0.818
39 0.244
4 0.108
40 0.623
41 0.709
42 0.907
43 0.153
44 0.118
45 0.853
46 0.0749
47 0.365
48 0.234
49 0.308
5 0.847
50 0.313
51 0.172
52 0.883
53 0.252
54 0.251
55 0.079
56 0.804
57 0.297
58 0.768
59 0.156
6 0.888
60 0.969
61 0.76
62 0.685
63 0.0898
64 0.649
65 0.251
66 0.711
67 0.705
68 0.473
69 0.222
7 0.547
70 0.0461
71 0.115
72 0.826
73 0.0247
74 0.323
75 0.135
76 0.63
77 0.0711
78 0.78
79 0.114
8 0.00768
80 0.265
81 0.589
82 0.467
83 0.884
84 0.134
85 0.0785
86 0.72
87 0.0234
88 0.732
89 0.0635
9 0.252
90 0.993
91 0.985
92 0.0799
93 0.87
94 0.209
95 0.0672
96 0.874
97 0.85
98 0.398
99 0.011



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs12499


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)
0002551 (fibroblast of dermis)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0010317 (germ layer / neural crest derived structure)
0002067 (dermis)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000062 (human dermal fibroblast sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

CL:0000134 (mesenchymal cell)