FF:11315-117D1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005349 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005349 | ||
|accession_numbers=CAGE;DRX008476;DRR009348;DRZ000773;DRZ002158;DRZ012123;DRZ013508 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037146;DRR041512;DRZ007154 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0005284,UBERON:0002049,UBERON:0006876,UBERON:0010317,UBERON:0007798,UBERON:0001017,UBERON:0001016,UBERON:0004535,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002590 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000170 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr15:42749722..42749739,-!p2@ZFP106!1.61!69.60!ZFP106;;chr6:85474299..85474324,-!p1@TBX18!1.45!48.41!TBX18;;chr6:134210243..134210257,+!p1@TCF21!1.44!26.58!TCF21;;chr12:81110684..81110700,+!p1@MYF5!1.36!22.15!MYF5;;chr16:86600426..86600441,+!p1@FOXC2!1.28!43.66!FOXC2;;chr12:66218598..66218645,+!p2@HMGA2!1.27!80.04!HMGA2;;chr3:147127177..147127194,+!p2@ZIC1!1.25!16.77!ZIC1;;chr3:147127142..147127168,+!p1@ZIC1!1.24!16.45!ZIC1;;chr14:61116183..61116208,-!p1@SIX1!1.23!60.11!SIX1;;chr1:40105299..40105326,-!p1@HEYL!1.22!15.50!HEYL;;chr5:158526917..158526932,-!p1@EBF1!1.21!37.33!EBF1;;chr11:125034640..125034655,+!p1@PKNOX2!1.15!12.97!PKNOX2;;chr14:62162258..62162269,+!p2@HIF1A!1.11!114.85!HIF1A;;chr14:62162285..62162296,+!p3@HIF1A!1.10!61.06!HIF1A;;chr3:147139053..147139112,+!p5@ZIC1!1.06!10.44!ZIC1;;chr3:147111231..147111281,+!p3@ZIC1!1.05!10.12!ZIC1;;chr22:19748231..19748317,+!p1@TBX1!1.03!9.81!TBX1;;chr12:66218255..66218304,+!p3@HMGA2!1.02!25.94!HMGA2;;chr5:158526459..158526481,-!p2@EBF1!1.01!12.34!EBF1;;chr15:80843484..80843499,+!p5@ARNT2!1.01!9.18!ARNT2;;chr11:46299539..46299620,+!p2@CREB3L1!0.99!15.19!CREB3L1;;chr11:61520075..61520136,+!p1@C11orf9!0.98!18.35!C11orf9;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.97!8.86!GLIS1;;chr3:25469724..25469773,+!p1@RARB!0.96!12.02!RARB;;chr2:19558373..19558392,-!p1@OSR1!0.94!21.83!OSR1;;chr11:46299199..46299233,+!p1@CREB3L1!0.93!40.50!CREB3L1;;chr15:96869255..96869291,+!p6@NR2F2!0.92!13.60!NR2F2;;chr8:77593474..77593612,+!p1@ZFHX4!0.91!31.32!ZFHX4;;chr15:96874145..96874166,+!p7@NR2F2!0.90!13.60!NR2F2;;chr5:92918919..92918942,+!p1@NR2F1!0.89!31.64!NR2F1;;chr14:61116168..61116180,-!p2@SIX1!0.89!7.91!SIX1;;chr1:170633348..170633399,+!p2@PRRX1!0.84!8.23!PRRX1;;chr14:62162224..62162254,+!p1@HIF1A!0.83!895.35!HIF1A;;chr1:170632959..170632987,+!p4@PRRX1!0.83!6.33!PRRX1;;chr12:85673977..85674015,+!p1@ALX1!0.83!5.69!ALX1;;chr8:93074803..93074845,-!p1@RUNX1T1!0.83!5.69!RUNX1T1;;chr1:151032860..151032918,+!p1@MLLT11!0.82!72.45!MLLT11;;chr7:137686763..137686784,-!p5@CREB3L2!0.82!10.12!CREB3L2;;chr4:81118647..81118666,+!p1@PRDM8!0.82!7.59!PRDM8;;chr12:66218836..66218888,+!p1@HMGA2!0.81!55.37!HMGA2;;chr2:185463247..185463263,+!p1@ZNF804A!0.81!10.12!ZNF804A;;chr9:16870710..16870763,-!p1@BNC2!0.81!9.81!BNC2;;chr12:66218212..66218244,+!p5@HMGA2!0.80!7.91!HMGA2;;chr2:45236540..45236577,-!p1@SIX2!0.80!5.38!SIX2;;chr3:141087393..141087426,+!p3@ZBTB38!0.78!21.51!ZBTB38;;chr1:170632285..170632309,+!p1@PRRX1!0.78!5.69!PRRX1;;chr1:170632250..170632277,+!p7@PRRX1!0.78!5.06!PRRX1;;chr20:30433396..30433414,-!p1@FOXS1!0.78!5.06!FOXS1;;chr7:17338266..17338282,+!p1@AHR!0.77!57.58!AHR;;chr7:113726357..113726443,+!p1@FOXP2!0.77!8.86!FOXP2;;chr2:145277882..145277967,-!p3@ZEB2!0.77!8.86!ZEB2;;chr18:19749541..19749557,+!p1@GATA6!0.76!16.14!GATA6;;chr17:59477233..59477263,+!p1@TBX2!0.76!15.82!TBX2;;chr8:25902876..25902936,-!p1@EBF2!0.76!4.75!EBF2;;chr12:66218183..66218209,+!p4@HMGA2!0.74!9.18!HMGA2;;chr10:131762504..131762555,-!p1@EBF3!0.73!4.43!EBF3;;chr1:170633058..170633084,+!p5@PRRX1!0.73!4.43!PRRX1;;chr15:96869114..96869160,+!p11@NR2F2!0.72!6.01!NR2F2;;chr12:66218443..66218461,+!p8@HMGA2!0.72!5.69!HMGA2;;chr5:72744594..72744609,-!p1@FOXD1!0.71!20.88!FOXD1;;chr12:80085061..80085119,-!p6@PAWR!0.71!6.96!PAWR;;chr15:83953397..83953425,-!p1@BNC1!0.70!4.75!BNC1;;chr7:44143925..44143970,+!p1@AEBP1!0.69!100.61!AEBP1;;chr15:96873984..96873999,+!p3@NR2F2!0.69!32.90!NR2F2;;chr15:57511609..57511651,+!p2@TCF12!0.69!6.96!TCF12;;chr15:96874012..96874042,+!p2@NR2F2!0.68!38.91!NR2F2;;chr1:151032922..151032951,+!p2@MLLT11!0.68!6.64!MLLT11;;chr2:114036488..114036504,-!p1@PAX8!0.68!3.80!PAX8;;chr11:125034605..125034636,+!p2@PKNOX2!0.68!3.80!PKNOX2;;chr12:66218923..66218934,+!p14@HMGA2!0.68!3.80!HMGA2;;chr5:158524625..158524669,-!p6@EBF1!0.68!3.80!EBF1;;chr8:77593448..77593471,+!p2@ZFHX4!0.68!3.80!ZFHX4;;chr12:66218378..66218401,+!p6@HMGA2!0.67!6.01!HMGA2;;chr15:96869222..96869251,+!p18@NR2F2!0.67!4.43!NR2F2;;chr21:30671690..30671762,+!p2@BACH1!0.66!13.60!BACH1;;chr2:145277640..145277771,-!p1@ZEB2!0.65!54.73!ZEB2;;chr2:166326200..166326216,+!p1@CSRNP3!0.65!5.38!CSRNP3;;chr9:16870659..16870675,-!p2@BNC2!0.65!4.43!BNC2;;chr12:85674018..85674039,+!p3@ALX1!0.65!3.48!ALX1;;chr3:147127489..147127503,+!p11@ZIC1!0.65!3.48!ZIC1;;chr8:49833948..49833973,-!p2@SNAI2!0.64!24.99!SNAI2;;chr7:19157248..19157268,-!p1@TWIST1!0.64!10.44!TWIST1;;chr15:96874244..96874259,+!p5@NR2F2!0.64!9.18!NR2F2;;chr10:63809013..63809041,+!p3@ARID5B!0.63!21.20!ARID5B;;chr1:170633262..170633285,+!p3@PRRX1!0.63!3.80!PRRX1;;chr15:96873921..96873946,+!p1@NR2F2!0.62!106.62!NR2F2;;chr7:150946015..150946070,-!p3@SMARCD3!0.62!7.59!SMARCD3;;chr17:59477275..59477286,+!p3@TBX2!0.62!4.43!TBX2;;chr15:96869206..96869220,+!p21@NR2F2!0.62!3.16!NR2F2;;chr8:93074848..93074871,-!p3@RUNX1T1!0.62!3.16!RUNX1T1;;chr2:5832508..5832524,+!p1@SOX11!0.62!3.16!SOX11;;chr5:321810..321877,+!p1@AHRR!0.61!11.39!AHRR;;chr15:96869292..96869320,+!p15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| |expression_enrichment_score=chr15:42749722..42749739,-!p2@ZFP106!1.61!69.60!ZFP106;;chr6:85474299..85474324,-!p1@TBX18!1.45!48.41!TBX18;;chr6:134210243..134210257,+!p1@TCF21!1.44!26.58!TCF21;;chr12:81110684..81110700,+!p1@MYF5!1.36!22.15!MYF5;;chr16:86600426..86600441,+!p1@FOXC2!1.28!43.66!FOXC2;;chr12:66218598..66218645,+!p2@HMGA2!1.27!80.04!HMGA2;;chr3:147127177..147127194,+!p2@ZIC1!1.25!16.77!ZIC1;;chr3:147127142..147127168,+!p1@ZIC1!1.24!16.45!ZIC1;;chr14:61116183..61116208,-!p1@SIX1!1.23!60.11!SIX1;;chr1:40105299..40105326,-!p1@HEYL!1.22!15.50!HEYL;;chr5:158526917..158526932,-!p1@EBF1!1.21!37.33!EBF1;;chr11:125034640..125034655,+!p1@PKNOX2!1.15!12.97!PKNOX2;;chr14:62162258..62162269,+!p2@HIF1A!1.11!114.85!HIF1A;;chr14:62162285..62162296,+!p3@HIF1A!1.10!61.06!HIF1A;;chr3:147139053..147139112,+!p5@ZIC1!1.06!10.44!ZIC1;;chr3:147111231..147111281,+!p3@ZIC1!1.05!10.12!ZIC1;;chr22:19748231..19748317,+!p1@TBX1!1.03!9.81!TBX1;;chr12:66218255..66218304,+!p3@HMGA2!1.02!25.94!HMGA2;;chr5:158526459..158526481,-!p2@EBF1!1.01!12.34!EBF1;;chr15:80843484..80843499,+!p5@ARNT2!1.01!9.18!ARNT2;;chr11:46299539..46299620,+!p2@CREB3L1!0.99!15.19!CREB3L1;;chr11:61520075..61520136,+!p1@C11orf9!0.98!18.35!C11orf9;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.97!8.86!GLIS1;;chr3:25469724..25469773,+!p1@RARB!0.96!12.02!RARB;;chr2:19558373..19558392,-!p1@OSR1!0.94!21.83!OSR1;;chr11:46299199..46299233,+!p1@CREB3L1!0.93!40.50!CREB3L1;;chr15:96869255..96869291,+!p6@NR2F2!0.92!13.60!NR2F2;;chr8:77593474..77593612,+!p1@ZFHX4!0.91!31.32!ZFHX4;;chr15:96874145..96874166,+!p7@NR2F2!0.90!13.60!NR2F2;;chr5:92918919..92918942,+!p1@NR2F1!0.89!31.64!NR2F1;;chr14:61116168..61116180,-!p2@SIX1!0.89!7.91!SIX1;;chr1:170633348..170633399,+!p2@PRRX1!0.84!8.23!PRRX1;;chr14:62162224..62162254,+!p1@HIF1A!0.83!895.35!HIF1A;;chr1:170632959..170632987,+!p4@PRRX1!0.83!6.33!PRRX1;;chr12:85673977..85674015,+!p1@ALX1!0.83!5.69!ALX1;;chr8:93074803..93074845,-!p1@RUNX1T1!0.83!5.69!RUNX1T1;;chr1:151032860..151032918,+!p1@MLLT11!0.82!72.45!MLLT11;;chr7:137686763..137686784,-!p5@CREB3L2!0.82!10.12!CREB3L2;;chr4:81118647..81118666,+!p1@PRDM8!0.82!7.59!PRDM8;;chr12:66218836..66218888,+!p1@HMGA2!0.81!55.37!HMGA2;;chr2:185463247..185463263,+!p1@ZNF804A!0.81!10.12!ZNF804A;;chr9:16870710..16870763,-!p1@BNC2!0.81!9.81!BNC2;;chr12:66218212..66218244,+!p5@HMGA2!0.80!7.91!HMGA2;;chr2:45236540..45236577,-!p1@SIX2!0.80!5.38!SIX2;;chr3:141087393..141087426,+!p3@ZBTB38!0.78!21.51!ZBTB38;;chr1:170632285..170632309,+!p1@PRRX1!0.78!5.69!PRRX1;;chr1:170632250..170632277,+!p7@PRRX1!0.78!5.06!PRRX1;;chr20:30433396..30433414,-!p1@FOXS1!0.78!5.06!FOXS1;;chr7:17338266..17338282,+!p1@AHR!0.77!57.58!AHR;;chr7:113726357..113726443,+!p1@FOXP2!0.77!8.86!FOXP2;;chr2:145277882..145277967,-!p3@ZEB2!0.77!8.86!ZEB2;;chr18:19749541..19749557,+!p1@GATA6!0.76!16.14!GATA6;;chr17:59477233..59477263,+!p1@TBX2!0.76!15.82!TBX2;;chr8:25902876..25902936,-!p1@EBF2!0.76!4.75!EBF2;;chr12:66218183..66218209,+!p4@HMGA2!0.74!9.18!HMGA2;;chr10:131762504..131762555,-!p1@EBF3!0.73!4.43!EBF3;;chr1:170633058..170633084,+!p5@PRRX1!0.73!4.43!PRRX1;;chr15:96869114..96869160,+!p11@NR2F2!0.72!6.01!NR2F2;;chr12:66218443..66218461,+!p8@HMGA2!0.72!5.69!HMGA2;;chr5:72744594..72744609,-!p1@FOXD1!0.71!20.88!FOXD1;;chr12:80085061..80085119,-!p6@PAWR!0.71!6.96!PAWR;;chr15:83953397..83953425,-!p1@BNC1!0.70!4.75!BNC1;;chr7:44143925..44143970,+!p1@AEBP1!0.69!100.61!AEBP1;;chr15:96873984..96873999,+!p3@NR2F2!0.69!32.90!NR2F2;;chr15:57511609..57511651,+!p2@TCF12!0.69!6.96!TCF12;;chr15:96874012..96874042,+!p2@NR2F2!0.68!38.91!NR2F2;;chr1:151032922..151032951,+!p2@MLLT11!0.68!6.64!MLLT11;;chr2:114036488..114036504,-!p1@PAX8!0.68!3.80!PAX8;;chr11:125034605..125034636,+!p2@PKNOX2!0.68!3.80!PKNOX2;;chr12:66218923..66218934,+!p14@HMGA2!0.68!3.80!HMGA2;;chr5:158524625..158524669,-!p6@EBF1!0.68!3.80!EBF1;;chr8:77593448..77593471,+!p2@ZFHX4!0.68!3.80!ZFHX4;;chr12:66218378..66218401,+!p6@HMGA2!0.67!6.01!HMGA2;;chr15:96869222..96869251,+!p18@NR2F2!0.67!4.43!NR2F2;;chr21:30671690..30671762,+!p2@BACH1!0.66!13.60!BACH1;;chr2:145277640..145277771,-!p1@ZEB2!0.65!54.73!ZEB2;;chr2:166326200..166326216,+!p1@CSRNP3!0.65!5.38!CSRNP3;;chr9:16870659..16870675,-!p2@BNC2!0.65!4.43!BNC2;;chr12:85674018..85674039,+!p3@ALX1!0.65!3.48!ALX1;;chr3:147127489..147127503,+!p11@ZIC1!0.65!3.48!ZIC1;;chr8:49833948..49833973,-!p2@SNAI2!0.64!24.99!SNAI2;;chr7:19157248..19157268,-!p1@TWIST1!0.64!10.44!TWIST1;;chr15:96874244..96874259,+!p5@NR2F2!0.64!9.18!NR2F2;;chr10:63809013..63809041,+!p3@ARID5B!0.63!21.20!ARID5B;;chr1:170633262..170633285,+!p3@PRRX1!0.63!3.80!PRRX1;;chr15:96873921..96873946,+!p1@NR2F2!0.62!106.62!NR2F2;;chr7:150946015..150946070,-!p3@SMARCD3!0.62!7.59!SMARCD3;;chr17:59477275..59477286,+!p3@TBX2!0.62!4.43!TBX2;;chr15:96869206..96869220,+!p21@NR2F2!0.62!3.16!NR2F2;;chr8:93074848..93074871,-!p3@RUNX1T1!0.62!3.16!RUNX1T1;;chr2:5832508..5832524,+!p1@SOX11!0.62!3.16!SOX11;;chr5:321810..321877,+!p1@AHRR!0.61!11.39!AHRR;;chr15:96869292..96869320,+!p15@NR2F2!0.61!4.75!NR2F2;;chr7:44143997..44144008,+!p3@AEBP1!0.61!4.11!AEBP1;;chr8:49833978..49833996,-!p1@SNAI2!0.60!73.72!SNAI2;;chr7:17338324..17338341,+!p3@AHR!0.60!11.71!AHR;;chr15:96874216..96874236,+!p13@NR2F2!0.60!5.06!NR2F2;;chr19:53496768..53496799,-!p1@ZNF702P!0.60!5.06!ZNF702P;;chr12:66218573..66218596,+!p7@HMGA2!0.60!4.75!HMGA2;;chr19:45260775..45260838,+!p5@BCL3!0.60!4.11!BCL3;;chr2:71127699..71127744,+!p1@VAX2!0.59!6.64!VAX2;;chr15:96876966..96877017,+!p12@NR2F2!0.59!4.43!NR2F2;;chr5:92919375..92919438,+!p6@NR2F1!0.59!3.16!NR2F1;;chr8:11561684..11561751,+!p1@GATA4!0.59!2.85!GATA4;;chr8:30890810..30890880,-!p1@PURG!0.59!2.85!PURG;;chr15:67418177..67418204,+!p9@SMAD3!0.59!2.85!SMAD3;;chr16:31076332..31076388,-!p3@ZNF668!0.59!2.85!ZNF668;;chr11:125034586..125034604,+!p3@PKNOX2!0.59!2.85!PKNOX2;;chr22:19746969..19746987,+!p2@TBX1!0.59!2.85!TBX1;;chr3:71294304..71294332,-!p35@FOXP1!0.59!2.85!FOXP1;;chr1:203055129..203055147,-!p1@MYOG!0.59!2.85!MYOG;;chr7:44143978..44143989,+!p2@AEBP1!0.58!5.69!AEBP1;;chr11:46299186..46299195,+!p3@CREB3L1!0.57!3.16!CREB3L1;;chr5:88178983..88179012,-!p1@MEF2C!0.56!24.99!MEF2C;;chr7:26191809..26191890,+!p1@NFE2L3!0.56!15.82!NFE2L3;;chr6:43140095..43140145,+!p5@SRF!0.56!3.48!SRF;;chr2:231084820..231084836,-!p5@SP110!0.56!3.16!SP110;;chr3:141087339..141087387,+!p2@ZBTB38!0.55!32.59!ZBTB38;;chr12:57504975..57505019,-!p2@STAT6!0.55!12.66!STAT6;;chr1:211433275..211433335,+!p2@RCOR3!0.55!9.49!RCOR3;;chr15:96874063..96874074,+!p10@NR2F2!0.55!5.38!NR2F2;;chr8:106330696..106330719,+!p2@ZFPM2!0.55!3.48!ZFPM2;;chr14:37131058..37131139,+!p1@PAX9!0.55!2.53!PAX9;;chr16:86600870..86600921,+!p2@FOXC2!0.55!2.53!FOXC2;;chr2:214014959..214015006,-!p4@IKZF2!0.55!2.53!IKZF2;;chr3:141150883..141150961,+!p6@ZBTB38!0.55!2.53!ZBTB38;;chr3:147111198..147111225,+!p4@ZIC1!0.55!2.53!ZIC1;;chr4:174451370..174451387,-!p1@HAND2!0.55!2.53!HAND2;;chr2:46524537..46524553,+!p1@EPAS1!0.54!316.06!EPAS1;;chr1:158985493..158985535,+!p4@IFI16!0.54!4.11!IFI16;;chr14:62193465..62193490,+!p7@HIF1A!0.54!3.80!HIF1A;;chr11:12696071..12696086,+!p3@TEAD1!0.54!3.48!TEAD1;;chr6:85473156..85473210,-!p2@TBX18!0.54!3.16!TBX18;;chr19:44952635..44952668,-!p1@ZNF229!0.53!14.87!ZNF229;;chr3:150126759..150126784,+!p2@TSC22D2!0.53!13.60!TSC22D2;;chr3:114343768..114343822,-!p1@ZBTB20!0.53!12.97!ZBTB20;;chr3:178789522..178789564,-!p2@ZMAT3!0.52!21.51!ZMAT3;;chr10:70320074..70320106,+!p1@TET1!0.52!5.38!TET1;;chr6:45390077..45390105,+!p9@RUNX2!0.52!3.16!RUNX2;;chr15:96874927..96874938,+!p8@NR2F2!0.51!5.69!NR2F2;;chr15:96881221..96881240,+!p19@NR2F2!0.51!3.16!NR2F2;;chr5:92918956..92918969,+!p4@NR2F1!0.51!2.53!NR2F1;;chr7:35293685..35293718,-!p1@TBX20!0.51!2.21!TBX20;;chr2:85981107..85981120,+!p3@ATOH8!0.51!2.21!ATOH8;;chr9:16871214..16871260,-!p11@BNC2!0.51!2.21!BNC2;;chr17:46682321..46682362,-!p1@HOXB6!0.51!2.21!HOXB6;;chr10:119303078..119303169,+!p2@EMX2!0.51!2.21!EMX2;;chr3:71179699..71179744,-!p2@FOXP1!0.50!20.88!FOXP1;;chr8:57123815..57123867,-!p1@PLAG1!0.50!11.07!PLAG1;;chr5:92918894..92918912,+!p2@NR2F1!0.50!8.86!NR2F1;;chr14:62203595..62203676,+!p4@HIF1A!0.50!4.75!HIF1A;;chr9:2158443..2158481,+!p2@SMARCA2!0.49!7.28!SMARCA2;;chr10:63809106..63809127,+!p1@ARID5B!0.48!36.70!ARID5B;;chr3:141121847..141121868,+!p5@ZBTB38!0.48!3.48!ZBTB38;;chr12:66218152..66218174,+!p10@HMGA2!0.48!2.21!HMGA2;;chr7:17338239..17338262,+!p2@AHR!0.47!19.30!AHR;;chr1:164528340..164528379,+!p4@PBX1!0.47!6.01!PBX1;;chr1:151032833..151032850,+!p3@MLLT11!0.47!5.38!MLLT11;;chr3:141105705..141105770,+!p4@ZBTB38!0.47!2.53!ZBTB38;;chr7:137686791..137686821,-!p1@CREB3L2!0.46!76.25!CREB3L2;;chrX:128657457..128657475,-!p1@SMARCA1!0.46!29.74!SMARCA1;;chr5:178322893..178322931,+!p1@ZFP2!0.46!3.16!ZFP2;;chr17:46655704..46655718,-!p2@HOXB4!0.46!3.16!HOXB4;;chr15:80843472..80843480,+!p22@ARNT2!0.46!1.90!ARNT2;;chr15:96869165..96869183,+!p20@NR2F2!0.46!1.90!NR2F2;;chr19:2867325..2867348,+!p1@ZNF556!0.46!1.90!ZNF556;;chr3:147127329..147127341,+!p7@ZIC1!0.46!1.90!ZIC1;;chr3:25470156..25470227,+!p2@RARB!0.46!1.90!RARB;;chr19:46801639..46801699,+!p1@HIF3A!0.46!1.90!HIF3A;;chr19:9609272..9609297,-!p1@ZNF560!0.46!1.90!ZNF560;;chr12:66218420..66218439,+!p12@HMGA2!0.46!1.90!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!0.46!1.90!HMGA2;;chr7:150945865..150945896,-!p4@SMARCD3!0.46!1.90!SMARCD3;;chr9:16728327..16728338,-!p5@BNC2!0.46!1.90!BNC2;;chr3:114343826..114343869,-!p4@ZBTB20!0.45!4.43!ZBTB20;;chrX:83757450..83757485,-!p1@HDX!0.44!10.12!HDX;;chr6:45390025..45390076,+!p2@RUNX2!0.44!5.38!RUNX2;;chr15:96873861..96873872,+!p9@NR2F2!0.44!4.43!NR2F2;;chr18:19749517..19749531,+!p3@GATA6!0.44!3.80!GATA6;;chr5:178368186..178368238,+!p1@ZNF454!0.44!3.80!ZNF454;;chr2:214015111..214015179,-!p1@IKZF2!0.44!3.80!IKZF2;;chr16:54320158..54320200,-!p5@IRX3!0.44!2.85!IRX3;;chrX:66763815..66763854,+!p2@AR!0.44!2.53!AR;;chr12:56753869..56753930,-!p1@STAT2!0.43!108.52!STAT2;;chr14:73360799..73360817,-!p1@DPF3!0.43!7.91!DPF3;;chr2:239756671..239756732,+!p1@TWIST2!0.43!7.28!TWIST2;;chr8:106330656..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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002590;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006876;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798 | |||
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor2.CNhs11900.11315-117D1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor2.CNhs11900.11315-117D1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor2.CNhs11900.11315-117D1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor2.CNhs11900.11315-117D1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor2.CNhs11900.11315-117D1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11315-117D1 | |id=FF:11315-117D1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000170 | ||
|is_obsolete= | |||
|library_id=CNhs11900 | |||
|library_id_phase_based=2:CNhs11900 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11315 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10009.GAGTGG.11315 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11315 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10009.GAGTGG.11315 | |||
|name=Smooth Muscle Cells - Brain Vascular, donor2 | |name=Smooth Muscle Cells - Brain Vascular, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11900,LSID834,release010,COMPLETED | |profile_hcage=CNhs11900,LSID834,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10009,,, | |profile_srnaseq=SRhi10009,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.059690542781635,0,0,0,0,-0.160318030086386,0,-0.0644400859089737,-0.116251994653037,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0.11938108556327,0,0.21292204628454,0,0.24535782069183,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.11938108556327,0,0,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11938108556327,0,0.0332400957740588,0,0,0,0,0,0,0,-0.118731014537543,0.0544626069313486,0,0.21292204628454,0,0.21292204628454,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169286415704756,0,0,0,0.0568237680217131,0.217653409535408,0,0,-2.73698573780429e-05,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0.21292204628454,0.11938108556327,0,0.11938108556327,0,0,0,0.21292204628454,0,0,0.300723195993295,0,-0.118918759390333,-0.0241340569602017,0,0,0.184717327285145,0,0.289842649570622,0,0,0.11938108556327,0,0,0,0,0.161722782618057,0,0.239430097981307,0,0,0,0,0.0838795490801184,0.201662271398011,0,0.056811850204098,-0.0683442610773682,0,0,0,0,0.0849267900273511,0,-0.120879483793741,-0.0827201683234173,0.116900088741447,0.0740582768325283,-0.055712496781182,0,0,0,0.101406150933372,0.0856312608794896,0,0,0.0231414730334372,0.092601417078771,0,0,0.156857489727225,0,0.419436645613553,0.223605010926237,0,-0.058391206761712,0,0,0,0,0,0,0,0,0.11938108556327,0,0,0.179780805641036,-0.207607511115699,-0.0304099808375785,0,0,0,-0.0777453886771227,0,-0.0138323107379372,0.133848346339851,-0.0654854885651419,-0.0884429711634925,-0.119480010165123,0,0.204744775286505,0.0831990927993111,-0.136781681598419,-0.118731014537543,0.142440800199484,-0.0706006339865772,0,0.00979460930959564,-0.0776025680130511,-0.068983778691571,-0.148586428194942,-0.0193992341873149,0.214075058016594,-0.063103619416347,0,0,0.11938108556327,0.242390772230973,0,-0.0293895314838004,0.218555346624187,-0.103725380972332,-0.054040938310183,-0.168930992313996,-0.109568789457318,-0.329147754794851,-0.0395325284566706,-0.338055367333325,0,0.485721996816504,0.00278703786022894,0,0,0.087649487069052,0.0598808105742523,-0.260658713817003,0,-0.128810002449305,-0.0683442610773682,0.059690542781635,0.139673327990471,-0.0704599290387138,0,0,0.0407120299481248,0,0,0,0,0.11938108556327,-0.134022035816149,-0.127553209339002,-0.232855561555545,0,-0.053376111332179,0.0583957185117261,-0.131134514428682,0,-0.296042602119266,0.0650137141537257,0.0570933070003833,-0.151804079640314,0,-0.0486456491631012,0.168299203114453,-0.0456096107757326,-0.0104558717005727,-0.0584468268118252,-0.223337431479313,-0.0274513953880973,-0.241855196263838,0.128918753707156,0,0.124795213809253,0.00638907533987509,0.162721757523283,-0.679498131621524,-0.0722669891498489,0.00187503767451651,0,0.0858893825821339,0,-0.0714785856733641,0,0.0698865004489475,0.0447352623346611,-0.439289374580686,-0.0528457181174198,0,-0.0398745076103795,-0.168641676954437,0,-0.103333450857013,0.0987843817893543,0,0.204800376027036,-0.0167667101503541,-0.211650427864589,0.145055296143913,-0.0101592470582696,0.144070020429152,0,0.11938108556327,-0.00831612399583199,-0.235476037764389,0,0.389775252317137,0.19551225626828,0.155126253003862,0.0969509728496063,0,0,-0.432778291708184,0,0,0.0453667857355839,0,0.061145932403595,0.158612592204409,0,-0.108622809454255,0,0,0.0353942803193646,0,0.361309580523247,0,0,0.0341634562242841,0.0746018549477354,0,0,0,0,0,0,0,0,0,0,0,-0.0094133544313566,0.193068741062412,0,-0.0242729130137034,0,0,0,0.11938108556327,0,-0.110803081130275,0,0.979650538767156,0.60437423802321,-0.00479391135638773,0.08990463060812,0.059690542781635,0,0,0,0.0741192470171475,-0.203236562094724,0.11938108556327,-0.0124816209343616,0,0,0,0,0.0332400957740588,0,0,0,0,0.0616506285096061,0.0773963960646752,0,0,0,-0.27695440160179,0,0,0.411938933691165,0.0366092860156338,0.0511110668698631,0,0,0,0,-0.248419175333174,0.273585579814834,0,-0.0240886357923914,0.346689037548643,0.110506350441422,0,0,-0.261347131789888,0,0,0.10930046702422,0,0,-0.0209247759461169,0,0,0,0,0,0,-0.00139246611521532,0,0,0,0,0,0,0,0,0,0,0.11938108556327,0.164126752813531,-0.0922240566585104,0.156385206146075,0,0,0,0,0,0,-0.0241060230789031,-0.197636267862996,0,0,0,0,0,0,0,0,-0.116258480301566,0,0,0,0,0,-0.0969923612426051,0,0,0,0.11938108556327,-0.351885074869344,0,0,-0.0644400859089737,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.162975657864492,0,0.11938108556327,0,0,0,0,0,-0.27483329820609,0,0.11938108556327,0,0,-0.113884373708977,0,0,0,-0.104796384789156,0,-0.160318030086386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144921324785311,0,0,0,0.827684907143818,0,0.214637557232306,-0.0537091073911222,0,0,0.217837656500222,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.059690542781635,-0.0348580438050884,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.0920328098005262,0,0,0,0,0,0,0.230071517205243,0.284428266941968,0.0449402919217744,0,0,0,0.052075450659815,0.11938108556327,0,0,0,0.0526036981443688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0256791795062185,0.11938108556327,0,0,0,0,0,0,0.21292204628454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0393626172946318,0,0,0,-0.0937051440937735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11938108556327,0,0,0,0,0,0,0,0,0,0,0,0.214060393869142,0,0,0,0,0,0,0,0,0.21292204628454,0,0,0,0,-0.0482220752390542,0,0.128545414054513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.21292204628454,-0.550504042515712,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0.411938933691165,0,0,0,0,0,0,0,0,0,0,0,0.059690542781635,0,0,-0.253610608288505,0,0,0.31520991952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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=SC1105 | |rna_catalog_number=SC1105 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=117D1 | |rna_tube_id=117D1 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10009.GAGTGG | |||
|sample_age=fetal | |sample_age=fetal | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;9.85366683597247e-224!GO:0005737;cytoplasm;6.89860343923915e-203!GO:0043226;organelle;2.90752493828698e-175!GO:0043229;intracellular organelle;4.85480509567198e-175!GO:0043231;intracellular membrane-bound organelle;2.24710816667537e-170!GO:0043227;membrane-bound organelle;5.48733230025733e-170!GO:0044444;cytoplasmic part;1.45617457281398e-151!GO:0044422;organelle part;4.14345194179338e-140!GO:0044446;intracellular organelle part;1.11865575387702e-138!GO:0032991;macromolecular complex;8.43848316761825e-93!GO:0030529;ribonucleoprotein complex;1.58487509050316e-76!GO:0044238;primary metabolic process;3.00680993122389e-75!GO:0005515;protein binding;6.10144534601546e-75!GO:0044237;cellular metabolic process;9.34226325413912e-75!GO:0043170;macromolecule metabolic process;5.60379905063178e-65!GO:0005739;mitochondrion;9.47582854950588e-65!GO:0043233;organelle lumen;2.60056021925086e-64!GO:0031974;membrane-enclosed lumen;2.60056021925086e-64!GO:0044428;nuclear part;1.63246758283495e-60!GO:0003723;RNA binding;3.48799959093072e-60!GO:0031090;organelle membrane;1.48586420704202e-57!GO:0005634;nucleus;4.75335673046945e-54!GO:0019538;protein metabolic process;6.8422004972874e-50!GO:0016043;cellular component organization and biogenesis;2.16715859479793e-49!GO:0015031;protein transport;3.24211304739408e-49!GO:0033036;macromolecule localization;2.29679029671972e-48!GO:0043234;protein complex;5.26832888677325e-48!GO:0005840;ribosome;1.10076618622007e-47!GO:0045184;establishment of protein localization;1.7580538684573e-45!GO:0044260;cellular macromolecule metabolic process;2.52070106480823e-45!GO:0008104;protein localization;3.22516358659754e-45!GO:0044267;cellular protein metabolic process;3.05293090316296e-44!GO:0009058;biosynthetic process;1.09437731943145e-43!GO:0006412;translation;1.09437731943145e-43!GO:0044429;mitochondrial part;1.32348606043802e-43!GO:0003735;structural constituent of ribosome;1.11835323459096e-41!GO:0031967;organelle envelope;2.53996530253486e-41!GO:0031975;envelope;6.41518005563421e-41!GO:0006396;RNA processing;4.20821163115031e-40!GO:0046907;intracellular transport;6.17470536439606e-40!GO:0005829;cytosol;6.54842230985413e-38!GO:0009059;macromolecule biosynthetic process;3.52279267744474e-37!GO:0044249;cellular biosynthetic process;2.16062270223873e-36!GO:0033279;ribosomal subunit;6.92396251009245e-36!GO:0031981;nuclear lumen;2.31396227620911e-35!GO:0006886;intracellular protein transport;1.59396864791332e-32!GO:0016071;mRNA metabolic process;2.26194076230565e-32!GO:0043228;non-membrane-bound organelle;2.28264353118393e-32!GO:0043232;intracellular non-membrane-bound organelle;2.28264353118393e-32!GO:0008380;RNA splicing;6.56254806349913e-31!GO:0043283;biopolymer metabolic process;7.58027926206565e-31!GO:0006996;organelle organization and biogenesis;1.21498404251251e-30!GO:0005740;mitochondrial envelope;1.131656045845e-28!GO:0065003;macromolecular complex assembly;1.61587286123668e-28!GO:0006397;mRNA processing;1.79590651894764e-28!GO:0031966;mitochondrial membrane;3.03873221635246e-27!GO:0019866;organelle inner membrane;4.45086804993548e-27!GO:0051649;establishment of cellular localization;1.9509857043845e-26!GO:0051641;cellular localization;2.95272907461123e-26!GO:0012505;endomembrane system;4.20277275620043e-26!GO:0022607;cellular component assembly;8.84796657614832e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.06230723858635e-25!GO:0010467;gene expression;1.51889089574542e-25!GO:0005743;mitochondrial inner membrane;2.23181405708086e-25!GO:0005783;endoplasmic reticulum;1.22949889650781e-24!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.83153752502711e-24!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.4620916933611e-24!GO:0006119;oxidative phosphorylation;8.61483074239358e-23!GO:0006259;DNA metabolic process;1.17994772305805e-21!GO:0006457;protein folding;1.62433910757431e-21!GO:0005681;spliceosome;1.76376198926389e-21!GO:0016462;pyrophosphatase activity;1.76376198926389e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.26365365801832e-21!GO:0000166;nucleotide binding;2.26870225788663e-21!GO:0005794;Golgi apparatus;2.32890744059326e-21!GO:0044445;cytosolic part;2.55209237328311e-21!GO:0005654;nucleoplasm;2.57664941228793e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;3.75240717388499e-21!GO:0007049;cell cycle;4.79116303855473e-21!GO:0017111;nucleoside-triphosphatase activity;1.5324969033429e-20!GO:0048770;pigment granule;1.90988941190127e-20!GO:0042470;melanosome;1.90988941190127e-20!GO:0044455;mitochondrial membrane part;8.07583548254673e-20!GO:0044432;endoplasmic reticulum part;1.77175944611399e-19!GO:0015934;large ribosomal subunit;5.44506176840845e-19!GO:0031980;mitochondrial lumen;2.85069497757406e-18!GO:0005759;mitochondrial matrix;2.85069497757406e-18!GO:0015935;small ribosomal subunit;6.85438281284531e-18!GO:0016874;ligase activity;9.96363663033937e-18!GO:0005746;mitochondrial respiratory chain;3.50672874667353e-17!GO:0006512;ubiquitin cycle;6.3151648395083e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;7.44743388938081e-17!GO:0044451;nucleoplasm part;1.07255797733982e-16!GO:0019941;modification-dependent protein catabolic process;1.69365121237081e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.69365121237081e-16!GO:0044257;cellular protein catabolic process;2.05226573291024e-16!GO:0006511;ubiquitin-dependent protein catabolic process;3.27490715261442e-16!GO:0022618;protein-RNA complex assembly;4.35102294177854e-16!GO:0051186;cofactor metabolic process;4.4387287385111e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.62877152534724e-16!GO:0048193;Golgi vesicle transport;4.63707484521502e-16!GO:0000502;proteasome complex (sensu Eukaryota);4.98524348377437e-16!GO:0044265;cellular macromolecule catabolic process;5.62696066173789e-16!GO:0016192;vesicle-mediated transport;8.51717688561118e-16!GO:0032553;ribonucleotide binding;9.84046158289257e-16!GO:0032555;purine ribonucleotide binding;9.84046158289257e-16!GO:0043285;biopolymer catabolic process;2.46942280322544e-15!GO:0017076;purine nucleotide binding;2.76994936909539e-15!GO:0006605;protein targeting;3.06597014273378e-15!GO:0022402;cell cycle process;4.11080453382193e-15!GO:0050136;NADH dehydrogenase (quinone) activity;6.12770728826293e-15!GO:0003954;NADH dehydrogenase activity;6.12770728826293e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.12770728826293e-15!GO:0030163;protein catabolic process;8.7973820087073e-15!GO:0005730;nucleolus;1.08714379944178e-14!GO:0000278;mitotic cell cycle;1.13610605939857e-14!GO:0005761;mitochondrial ribosome;1.75525704053e-14!GO:0000313;organellar ribosome;1.75525704053e-14!GO:0051082;unfolded protein binding;2.00525510266927e-14!GO:0009057;macromolecule catabolic process;2.47660992685121e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.65305258738908e-14!GO:0044248;cellular catabolic process;7.07023975130711e-14!GO:0008134;transcription factor binding;1.1494209523942e-13!GO:0005789;endoplasmic reticulum membrane;1.60886645259979e-13!GO:0006974;response to DNA damage stimulus;1.60886645259979e-13!GO:0043412;biopolymer modification;2.24301355997739e-13!GO:0008135;translation factor activity, nucleic acid binding;2.34469477240142e-13!GO:0005635;nuclear envelope;2.35339179587885e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.24103811188043e-13!GO:0042775;organelle ATP synthesis coupled electron transport;3.24103811188043e-13!GO:0042773;ATP synthesis coupled electron transport;3.24103811188043e-13!GO:0030964;NADH dehydrogenase complex (quinone);3.36524777466267e-13!GO:0045271;respiratory chain complex I;3.36524777466267e-13!GO:0005747;mitochondrial respiratory chain complex I;3.36524777466267e-13!GO:0005524;ATP binding;4.28686967124038e-13!GO:0006732;coenzyme metabolic process;6.59565296483816e-13!GO:0031965;nuclear membrane;8.11839029838236e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;8.71197154646574e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.03132732010369e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;9.67862809366096e-13!GO:0032559;adenyl ribonucleotide binding;1.05862315430857e-12!GO:0003676;nucleic acid binding;2.25354610897193e-12!GO:0030554;adenyl nucleotide binding;3.99100697411187e-12!GO:0006464;protein modification process;5.58170139346183e-12!GO:0005793;ER-Golgi intermediate compartment;5.69028342958557e-12!GO:0009259;ribonucleotide metabolic process;2.5170789195721e-11!GO:0044453;nuclear membrane part;4.46532632530908e-11!GO:0009055;electron carrier activity;5.11273728730619e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;5.59623026125021e-11!GO:0000375;RNA splicing, via transesterification reactions;5.59623026125021e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.59623026125021e-11!GO:0006281;DNA repair;6.93515057734604e-11!GO:0006163;purine nucleotide metabolic process;6.93515057734604e-11!GO:0051301;cell division;8.95295914798667e-11!GO:0003743;translation initiation factor activity;1.02004906690046e-10!GO:0008639;small protein conjugating enzyme activity;1.06083109609918e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.16415434509257e-10!GO:0000087;M phase of mitotic cell cycle;1.52873587209186e-10!GO:0009150;purine ribonucleotide metabolic process;1.56510986012978e-10!GO:0004842;ubiquitin-protein ligase activity;1.57041310500544e-10!GO:0016887;ATPase activity;1.61821030574373e-10!GO:0042623;ATPase activity, coupled;1.72399889076347e-10!GO:0006413;translational initiation;1.74718568181643e-10!GO:0019787;small conjugating protein ligase activity;1.78064013085295e-10!GO:0012501;programmed cell death;1.82518056722284e-10!GO:0022403;cell cycle phase;1.96899654235284e-10!GO:0007067;mitosis;2.38085898617561e-10!GO:0006915;apoptosis;3.76659166358033e-10!GO:0006446;regulation of translational initiation;4.97487285229053e-10!GO:0008565;protein transporter activity;5.24298450857181e-10!GO:0006164;purine nucleotide biosynthetic process;5.38728945480564e-10!GO:0009719;response to endogenous stimulus;5.65008632006691e-10!GO:0016604;nuclear body;6.24303243313267e-10!GO:0006913;nucleocytoplasmic transport;6.41749728224679e-10!GO:0043687;post-translational protein modification;7.1233952736646e-10!GO:0009260;ribonucleotide biosynthetic process;7.91549590388991e-10!GO:0005694;chromosome;1.05963574604004e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.20099280567839e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.21453514771451e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.21453514771451e-09!GO:0051169;nuclear transport;1.51686314509505e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.65097839972465e-09!GO:0009141;nucleoside triphosphate metabolic process;2.11184770404355e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.15063032205285e-09!GO:0009144;purine nucleoside triphosphate metabolic process;2.15063032205285e-09!GO:0042254;ribosome biogenesis and assembly;2.40856828623193e-09!GO:0009060;aerobic respiration;2.47576590817276e-09!GO:0044431;Golgi apparatus part;2.54067325289124e-09!GO:0006888;ER to Golgi vesicle-mediated transport;3.51879621177593e-09!GO:0016881;acid-amino acid ligase activity;4.23799539447196e-09!GO:0006461;protein complex assembly;4.41404642070144e-09!GO:0008219;cell death;4.87546159749027e-09!GO:0016265;death;4.87546159749027e-09!GO:0005768;endosome;4.91435480099689e-09!GO:0045333;cellular respiration;5.13283677961064e-09!GO:0015986;ATP synthesis coupled proton transport;7.18286466475308e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.18286466475308e-09!GO:0051726;regulation of cell cycle;7.65182693170088e-09!GO:0044427;chromosomal part;8.25935881120559e-09!GO:0051276;chromosome organization and biogenesis;8.6172046125923e-09!GO:0004386;helicase activity;8.95309351086932e-09!GO:0000074;regulation of progression through cell cycle;9.00449568527875e-09!GO:0009142;nucleoside triphosphate biosynthetic process;9.03846407736548e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.03846407736548e-09!GO:0005643;nuclear pore;9.7324105238707e-09!GO:0003712;transcription cofactor activity;1.05105513884024e-08!GO:0030120;vesicle coat;1.24514504226817e-08!GO:0030662;coated vesicle membrane;1.24514504226817e-08!GO:0005788;endoplasmic reticulum lumen;1.62516589026572e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.62516589026572e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.62516589026572e-08!GO:0019829;cation-transporting ATPase activity;1.63314618931387e-08!GO:0003924;GTPase activity;1.64426382484683e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.79872534158851e-08!GO:0015078;hydrogen ion transmembrane transporter activity;2.08509029822149e-08!GO:0046034;ATP metabolic process;2.12498960086019e-08!GO:0006260;DNA replication;2.59654829491714e-08!GO:0009056;catabolic process;2.87341293916845e-08!GO:0017038;protein import;2.87959304873068e-08!GO:0051188;cofactor biosynthetic process;4.5791237004881e-08!GO:0065002;intracellular protein transport across a membrane;4.74185300834531e-08!GO:0006399;tRNA metabolic process;5.3601156535837e-08!GO:0016607;nuclear speck;6.94676207829067e-08!GO:0016070;RNA metabolic process;6.984534540556e-08!GO:0000279;M phase;7.82442268742906e-08!GO:0016469;proton-transporting two-sector ATPase complex;8.1276395534347e-08!GO:0006099;tricarboxylic acid cycle;1.05153941882036e-07!GO:0046356;acetyl-CoA catabolic process;1.05153941882036e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;1.14993423766605e-07!GO:0048475;coated membrane;1.32518187527389e-07!GO:0030117;membrane coat;1.32518187527389e-07!GO:0008026;ATP-dependent helicase activity;1.44757155174035e-07!GO:0015630;microtubule cytoskeleton;1.47926691432019e-07!GO:0006754;ATP biosynthetic process;1.49177925584063e-07!GO:0006753;nucleoside phosphate metabolic process;1.49177925584063e-07!GO:0046930;pore complex;1.71362538991607e-07!GO:0051246;regulation of protein metabolic process;2.11377672198578e-07!GO:0016740;transferase activity;2.73374606031277e-07!GO:0016023;cytoplasmic membrane-bound vesicle;2.86166108215942e-07!GO:0006323;DNA packaging;3.02227289144157e-07!GO:0031988;membrane-bound vesicle;3.04125328346675e-07!GO:0009117;nucleotide metabolic process;4.05419112764715e-07!GO:0000139;Golgi membrane;4.26780500824646e-07!GO:0008654;phospholipid biosynthetic process;4.50636483077989e-07!GO:0006084;acetyl-CoA metabolic process;4.51261038509117e-07!GO:0016853;isomerase activity;4.51803976814968e-07!GO:0009109;coenzyme catabolic process;4.64937051645933e-07!GO:0051187;cofactor catabolic process;4.86169017937732e-07!GO:0016491;oxidoreductase activity;5.45155671042535e-07!GO:0048523;negative regulation of cellular process;5.46151123908598e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.53974043078651e-07!GO:0004812;aminoacyl-tRNA ligase activity;5.53974043078651e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.53974043078651e-07!GO:0007005;mitochondrion organization and biogenesis;5.78297209612041e-07!GO:0043038;amino acid activation;6.37747792889078e-07!GO:0006418;tRNA aminoacylation for protein translation;6.37747792889078e-07!GO:0043039;tRNA aminoacylation;6.37747792889078e-07!GO:0043566;structure-specific DNA binding;6.48567818939739e-07!GO:0006403;RNA localization;7.36446714323526e-07!GO:0050657;nucleic acid transport;7.72140856932024e-07!GO:0051236;establishment of RNA localization;7.72140856932024e-07!GO:0050658;RNA transport;7.72140856932024e-07!GO:0031252;leading edge;8.67359627581131e-07!GO:0005839;proteasome core complex (sensu Eukaryota);9.13381045421642e-07!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.01417977669694e-06!GO:0065004;protein-DNA complex assembly;1.02603255009096e-06!GO:0044440;endosomal part;1.06590170591885e-06!GO:0010008;endosome membrane;1.06590170591885e-06!GO:0043067;regulation of programmed cell death;1.19320924173929e-06!GO:0005773;vacuole;1.21379187616302e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.27487077842017e-06!GO:0042981;regulation of apoptosis;1.32401688064518e-06!GO:0009108;coenzyme biosynthetic process;1.40597804443336e-06!GO:0016787;hydrolase activity;1.44610459958746e-06!GO:0031982;vesicle;1.51334138327148e-06!GO:0016859;cis-trans isomerase activity;1.56376368499386e-06!GO:0031410;cytoplasmic vesicle;1.58220930443262e-06!GO:0005798;Golgi-associated vesicle;1.89069479384775e-06!GO:0032446;protein modification by small protein conjugation;1.95169566734018e-06!GO:0005770;late endosome;2.39803300895353e-06!GO:0016567;protein ubiquitination;2.41385527496597e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.42433657753589e-06!GO:0030532;small nuclear ribonucleoprotein complex;2.50765126996974e-06!GO:0015980;energy derivation by oxidation of organic compounds;3.25786885287597e-06!GO:0007010;cytoskeleton organization and biogenesis;3.54841186753148e-06!GO:0045259;proton-transporting ATP synthase complex;4.01933382992328e-06!GO:0006613;cotranslational protein targeting to membrane;4.2705809095225e-06!GO:0000151;ubiquitin ligase complex;4.49597001160213e-06!GO:0006752;group transfer coenzyme metabolic process;4.60059820003501e-06!GO:0004298;threonine endopeptidase activity;4.98138703023664e-06!GO:0051170;nuclear import;5.06814765985991e-06!GO:0003697;single-stranded DNA binding;5.30198017284461e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.55855015929489e-06!GO:0006364;rRNA processing;5.69654566744232e-06!GO:0006333;chromatin assembly or disassembly;7.55247675230585e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.77716319687723e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;7.91689841703601e-06!GO:0000785;chromatin;9.37568898193296e-06!GO:0006606;protein import into nucleus;9.47552947440115e-06!GO:0016072;rRNA metabolic process;9.74747387246635e-06!GO:0048519;negative regulation of biological process;9.79220218047618e-06!GO:0006091;generation of precursor metabolites and energy;1.0803181413155e-05!GO:0005762;mitochondrial large ribosomal subunit;1.23858807308178e-05!GO:0000315;organellar large ribosomal subunit;1.23858807308178e-05!GO:0045786;negative regulation of progression through cell cycle;1.32532680513882e-05!GO:0006793;phosphorus metabolic process;1.32532680513882e-05!GO:0006796;phosphate metabolic process;1.32532680513882e-05!GO:0016310;phosphorylation;1.36800352929592e-05!GO:0000323;lytic vacuole;1.39769955287466e-05!GO:0005764;lysosome;1.39769955287466e-05!GO:0005525;GTP binding;1.4459866585329e-05!GO:0030133;transport vesicle;1.60513687754749e-05!GO:0016779;nucleotidyltransferase activity;1.63181544436357e-05!GO:0008610;lipid biosynthetic process;1.67116147320306e-05!GO:0043623;cellular protein complex assembly;1.70973614881306e-05!GO:0043069;negative regulation of programmed cell death;1.76905579921291e-05!GO:0005791;rough endoplasmic reticulum;2.12328181360906e-05!GO:0016126;sterol biosynthetic process;2.14369402732172e-05!GO:0030036;actin cytoskeleton organization and biogenesis;2.16196126050181e-05!GO:0005813;centrosome;2.37158788693695e-05!GO:0051028;mRNA transport;2.47157134729381e-05!GO:0006366;transcription from RNA polymerase II promoter;2.50300356268002e-05!GO:0005769;early endosome;2.73028339998534e-05!GO:0051329;interphase of mitotic cell cycle;2.81633073484046e-05!GO:0030867;rough endoplasmic reticulum membrane;3.05577224913852e-05!GO:0019899;enzyme binding;3.10243247854234e-05!GO:0043066;negative regulation of apoptosis;3.23796697454793e-05!GO:0000245;spliceosome assembly;3.69661133562025e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.26973867247693e-05!GO:0008092;cytoskeletal protein binding;4.27855089636159e-05!GO:0051789;response to protein stimulus;4.88699288440558e-05!GO:0006986;response to unfolded protein;4.88699288440558e-05!GO:0005819;spindle;5.02177066253725e-05!GO:0008361;regulation of cell size;5.20822299968129e-05!GO:0051325;interphase;5.26844928818218e-05!GO:0046474;glycerophospholipid biosynthetic process;5.5994596362482e-05!GO:0051427;hormone receptor binding;6.41347360362681e-05!GO:0005815;microtubule organizing center;6.43411199281306e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;6.80656514723966e-05!GO:0032561;guanyl ribonucleotide binding;7.38662580525276e-05!GO:0019001;guanyl nucleotide binding;7.38662580525276e-05!GO:0030029;actin filament-based process;7.53220124562997e-05!GO:0006916;anti-apoptosis;7.96201639442023e-05!GO:0003724;RNA helicase activity;7.96201639442023e-05!GO:0016049;cell growth;8.10228970403228e-05!GO:0043021;ribonucleoprotein binding;8.70352846304988e-05!GO:0006334;nucleosome assembly;9.06075522459368e-05!GO:0016568;chromatin modification;9.30418347790192e-05!GO:0003713;transcription coactivator activity;9.77383418392754e-05!GO:0005667;transcription factor complex;9.82584652998847e-05!GO:0005905;coated pit;0.000100252429757927!GO:0050794;regulation of cellular process;0.00011010886385493!GO:0046467;membrane lipid biosynthetic process;0.000113622220920104!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000115509660667572!GO:0019867;outer membrane;0.000115509660667572!GO:0031968;organelle outer membrane;0.000115509660667572!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000122072933610672!GO:0001558;regulation of cell growth;0.000123204664342749!GO:0035257;nuclear hormone receptor binding;0.000126913574850958!GO:0045454;cell redox homeostasis;0.000132149511282971!GO:0033116;ER-Golgi intermediate compartment membrane;0.000150270315256879!GO:0006695;cholesterol biosynthetic process;0.000157631905016465!GO:0006612;protein targeting to membrane;0.000174947810967747!GO:0044262;cellular carbohydrate metabolic process;0.000187965923094454!GO:0000314;organellar small ribosomal subunit;0.000206892210897284!GO:0005763;mitochondrial small ribosomal subunit;0.000206892210897284!GO:0005048;signal sequence binding;0.000211792077792648!GO:0030663;COPI coated vesicle membrane;0.000245174621966291!GO:0030126;COPI vesicle coat;0.000245174621966291!GO:0003714;transcription corepressor activity;0.000280930356161033!GO:0009165;nucleotide biosynthetic process;0.000288096032963597!GO:0031497;chromatin assembly;0.000301830354936049!GO:0005885;Arp2/3 protein complex;0.000303862327375185!GO:0008250;oligosaccharyl transferase complex;0.000309434843110305!GO:0007051;spindle organization and biogenesis;0.000309792633300871!GO:0016044;membrane organization and biogenesis;0.000314624525594051!GO:0004576;oligosaccharyl transferase activity;0.000356037265454536!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000399032407849447!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000411714207205556!GO:0046489;phosphoinositide biosynthetic process;0.000428376402963255!GO:0016563;transcription activator activity;0.000439498578535069!GO:0006891;intra-Golgi vesicle-mediated transport;0.00056357401208458!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000569099985596183!GO:0015399;primary active transmembrane transporter activity;0.000569099985596183!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000587137908435293!GO:0030137;COPI-coated vesicle;0.0006203197808902!GO:0005741;mitochondrial outer membrane;0.00062036033847952!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000631788947740656!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000672490002794336!GO:0003899;DNA-directed RNA polymerase activity;0.000691283269388092!GO:0048522;positive regulation of cellular process;0.000703167015487178!GO:0051920;peroxiredoxin activity;0.000739468223963592!GO:0048471;perinuclear region of cytoplasm;0.000811470985527126!GO:0000059;protein import into nucleus, docking;0.000823109714990082!GO:0018196;peptidyl-asparagine modification;0.000828925388762974!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000828925388762974!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000834739680550376!GO:0050789;regulation of biological process;0.000901065323072541!GO:0031072;heat shock protein binding;0.000901983751892428!GO:0016363;nuclear matrix;0.00105688486434142!GO:0000075;cell cycle checkpoint;0.00108546681582489!GO:0000775;chromosome, pericentric region;0.00108710939469898!GO:0030027;lamellipodium;0.00112015242722197!GO:0015992;proton transport;0.00113374970412348!GO:0007243;protein kinase cascade;0.00119385503125443!GO:0045045;secretory pathway;0.00129759217674231!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00130520451661739!GO:0006818;hydrogen transport;0.00130520451661739!GO:0006261;DNA-dependent DNA replication;0.00137890901010975!GO:0030658;transport vesicle membrane;0.00137890901010975!GO:0042802;identical protein binding;0.00138119739545393!GO:0031324;negative regulation of cellular metabolic process;0.00143129383204351!GO:0001726;ruffle;0.00143313075398513!GO:0016564;transcription repressor activity;0.00144687893740029!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00148425895136915!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00148425895136915!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00148425895136915!GO:0003690;double-stranded DNA binding;0.00154012020320631!GO:0008186;RNA-dependent ATPase activity;0.00154012020320631!GO:0048500;signal recognition particle;0.00158884682786039!GO:0016197;endosome transport;0.00161264077567998!GO:0051252;regulation of RNA metabolic process;0.00170961287820061!GO:0030132;clathrin coat of coated pit;0.00180204309596755!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00181777094110155!GO:0043681;protein import into mitochondrion;0.00193329356977542!GO:0000776;kinetochore;0.0021908813387542!GO:0022890;inorganic cation transmembrane transporter activity;0.00229999045020864!GO:0051168;nuclear export;0.00235323740982957!GO:0065009;regulation of a molecular function;0.00256174272580832!GO:0035258;steroid hormone receptor binding;0.00258268905790323!GO:0019843;rRNA binding;0.00263025100279383!GO:0030659;cytoplasmic vesicle membrane;0.00280985233296062!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0029419729933709!GO:0030134;ER to Golgi transport vesicle;0.00295034209041588!GO:0008094;DNA-dependent ATPase activity;0.00318011035434545!GO:0000082;G1/S transition of mitotic cell cycle;0.00318011035434545!GO:0006839;mitochondrial transport;0.00318011035434545!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00318011035434545!GO:0045047;protein targeting to ER;0.00318011035434545!GO:0006650;glycerophospholipid metabolic process;0.00318011035434545!GO:0006626;protein targeting to mitochondrion;0.00340727302982847!GO:0048487;beta-tubulin binding;0.00368074455659252!GO:0030176;integral to endoplasmic reticulum membrane;0.00380541973739398!GO:0030127;COPII vesicle coat;0.00397076593746375!GO:0012507;ER to Golgi transport vesicle membrane;0.00397076593746375!GO:0008047;enzyme activator activity;0.00399069976898867!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00399069976898867!GO:0016408;C-acyltransferase activity;0.00399691559379583!GO:0040008;regulation of growth;0.00402062505444086!GO:0004004;ATP-dependent RNA helicase activity;0.00402799405143182!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0041729807529435!GO:0009892;negative regulation of metabolic process;0.00419223481065851!GO:0030660;Golgi-associated vesicle membrane;0.00434794939027334!GO:0044433;cytoplasmic vesicle part;0.00471102154741777!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00471102154741777!GO:0005874;microtubule;0.00471102154741777!GO:0043492;ATPase activity, coupled to movement of substances;0.00471102154741777!GO:0030521;androgen receptor signaling pathway;0.00481887225744474!GO:0043284;biopolymer biosynthetic process;0.00483339878092842!GO:0030118;clathrin coat;0.00483339878092842!GO:0003678;DNA helicase activity;0.00488237649868176!GO:0003729;mRNA binding;0.00503106723446662!GO:0007264;small GTPase mediated signal transduction;0.00504675903197132!GO:0007006;mitochondrial membrane organization and biogenesis;0.00520244636789111!GO:0031901;early endosome membrane;0.00526166802604919!GO:0004177;aminopeptidase activity;0.00532221673765047!GO:0008139;nuclear localization sequence binding;0.00558519320356148!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00558519320356148!GO:0015002;heme-copper terminal oxidase activity;0.00558519320356148!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00558519320356148!GO:0004129;cytochrome-c oxidase activity;0.00558519320356148!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00560383992997314!GO:0007050;cell cycle arrest;0.00568940375613155!GO:0006643;membrane lipid metabolic process;0.00571794581241859!GO:0030384;phosphoinositide metabolic process;0.00593776361227294!GO:0007052;mitotic spindle organization and biogenesis;0.00597458389094806!GO:0006414;translational elongation;0.00624814865753841!GO:0006383;transcription from RNA polymerase III promoter;0.00637306381214389!GO:0006302;double-strand break repair;0.00643936533692865!GO:0008180;signalosome;0.00643936533692865!GO:0008312;7S RNA binding;0.00645434706346396!GO:0015631;tubulin binding;0.00651238985551524!GO:0006595;polyamine metabolic process;0.00656001344711394!GO:0003684;damaged DNA binding;0.00656001344711394!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00667197472133635!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00667197472133635!GO:0051287;NAD binding;0.00667949944479768!GO:0005869;dynactin complex;0.00672627268516088!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00716230199614616!GO:0043488;regulation of mRNA stability;0.00747287087484563!GO:0043487;regulation of RNA stability;0.00747287087484563!GO:0017166;vinculin binding;0.0074829091025049!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00809520683334354!GO:0019752;carboxylic acid metabolic process;0.00848830783204031!GO:0006082;organic acid metabolic process;0.00861478454422283!GO:0051128;regulation of cellular component organization and biogenesis;0.00871703855167678!GO:0030880;RNA polymerase complex;0.00895209122469754!GO:0003779;actin binding;0.00898245933007812!GO:0006950;response to stress;0.00906585006020647!GO:0051539;4 iron, 4 sulfur cluster binding;0.00910084453744904!GO:0016125;sterol metabolic process;0.00910084453744904!GO:0012506;vesicle membrane;0.00929854403135289!GO:0007040;lysosome organization and biogenesis;0.00929854403135289!GO:0006892;post-Golgi vesicle-mediated transport;0.0093920201997438!GO:0031124;mRNA 3'-end processing;0.00942011023517721!GO:0031902;late endosome membrane;0.00944485350197354!GO:0009967;positive regulation of signal transduction;0.0100694031324541!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0101710329268605!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0104100069399743!GO:0051087;chaperone binding;0.0104630270607864!GO:0046483;heterocycle metabolic process;0.0104892015559294!GO:0006506;GPI anchor biosynthetic process;0.0105031576013146!GO:0001952;regulation of cell-matrix adhesion;0.0106216409970919!GO:0006979;response to oxidative stress;0.0106311009293243!GO:0016860;intramolecular oxidoreductase activity;0.0106850015874024!GO:0003682;chromatin binding;0.0109124666836402!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0109276384728865!GO:0006352;transcription initiation;0.0110875890781076!GO:0005862;muscle thin filament tropomyosin;0.0112372284706383!GO:0005096;GTPase activator activity;0.0112711825773999!GO:0005684;U2-dependent spliceosome;0.0113225644388224!GO:0043022;ribosome binding;0.0113591851007027!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.011674864917781!GO:0007093;mitotic cell cycle checkpoint;0.0117475180198974!GO:0007033;vacuole organization and biogenesis;0.0118850929954139!GO:0006505;GPI anchor metabolic process;0.0120359329586445!GO:0005657;replication fork;0.0121755534840829!GO:0044452;nucleolar part;0.0122186914949225!GO:0000339;RNA cap binding;0.0122250899088902!GO:0006672;ceramide metabolic process;0.0122951905507464!GO:0005637;nuclear inner membrane;0.0123700685704495!GO:0007034;vacuolar transport;0.0123938820183404!GO:0009112;nucleobase metabolic process;0.0124006863688992!GO:0050681;androgen receptor binding;0.0124303533432174!GO:0032940;secretion by cell;0.0124807931621444!GO:0006289;nucleotide-excision repair;0.0124807931621444!GO:0006497;protein amino acid lipidation;0.0129706590289775!GO:0044255;cellular lipid metabolic process;0.0129706590289775!GO:0045792;negative regulation of cell size;0.0129706590289775!GO:0051540;metal cluster binding;0.013152459307745!GO:0051536;iron-sulfur cluster binding;0.013152459307745!GO:0008033;tRNA processing;0.0133603438607847!GO:0030125;clathrin vesicle coat;0.0134597006933752!GO:0030665;clathrin coated vesicle membrane;0.0134597006933752!GO:0042158;lipoprotein biosynthetic process;0.0136288340830585!GO:0005832;chaperonin-containing T-complex;0.0143118645326725!GO:0006310;DNA recombination;0.0143422153008063!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0145795918200799!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0148837188180658!GO:0000209;protein polyubiquitination;0.0152551908948157!GO:0046519;sphingoid metabolic process;0.0155839855872721!GO:0007030;Golgi organization and biogenesis;0.015631966287687!GO:0005938;cell cortex;0.0157182194520361!GO:0033673;negative regulation of kinase activity;0.0162491919724838!GO:0006469;negative regulation of protein kinase activity;0.0162491919724838!GO:0030119;AP-type membrane coat adaptor complex;0.0163238506689998!GO:0008632;apoptotic program;0.0163238506689998!GO:0043065;positive regulation of apoptosis;0.0163238506689998!GO:0006611;protein export from nucleus;0.0163238506689998!GO:0033559;unsaturated fatty acid metabolic process;0.0163238506689998!GO:0006636;unsaturated fatty acid biosynthetic process;0.0163238506689998!GO:0004674;protein serine/threonine kinase activity;0.016645822959716!GO:0031589;cell-substrate adhesion;0.0167070246606043!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0167070246606043!GO:0000428;DNA-directed RNA polymerase complex;0.0167070246606043!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0168097738532618!GO:0022406;membrane docking;0.0169745618231737!GO:0048278;vesicle docking;0.0169745618231737!GO:0030308;negative regulation of cell growth;0.0169894337068619!GO:0016584;nucleosome positioning;0.0170812485055342!GO:0030145;manganese ion binding;0.0171081051803402!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0172054870350577!GO:0005774;vacuolar membrane;0.0176251446111008!GO:0051052;regulation of DNA metabolic process;0.0176940147228293!GO:0000786;nucleosome;0.0176940147228293!GO:0007160;cell-matrix adhesion;0.0176940147228293!GO:0006509;membrane protein ectodomain proteolysis;0.0178301574363777!GO:0033619;membrane protein proteolysis;0.0178301574363777!GO:0050790;regulation of catalytic activity;0.0181706180221!GO:0008022;protein C-terminus binding;0.0190967419898181!GO:0016272;prefoldin complex;0.0193373632911289!GO:0043068;positive regulation of programmed cell death;0.0193373632911289!GO:0006740;NADPH regeneration;0.0194382414240659!GO:0006098;pentose-phosphate shunt;0.0194382414240659!GO:0050811;GABA receptor binding;0.019482037877455!GO:0006402;mRNA catabolic process;0.0195656110712027!GO:0050662;coenzyme binding;0.0199326572476872!GO:0003711;transcription elongation regulator activity;0.0202074257380559!GO:0005100;Rho GTPase activator activity;0.0207189884366636!GO:0051348;negative regulation of transferase activity;0.0209664403143802!GO:0009116;nucleoside metabolic process;0.0210356815184526!GO:0000049;tRNA binding;0.021789333905622!GO:0005581;collagen;0.0218357678367677!GO:0031529;ruffle organization and biogenesis;0.0221283059040732!GO:0007088;regulation of mitosis;0.0224058641888204!GO:0031625;ubiquitin protein ligase binding;0.0229414805850132!GO:0006644;phospholipid metabolic process;0.0233411006831854!GO:0005099;Ras GTPase activator activity;0.0233887358534288!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0234443687592269!GO:0006904;vesicle docking during exocytosis;0.0248047103903303!GO:0006897;endocytosis;0.0248268502446357!GO:0010324;membrane invagination;0.0248268502446357!GO:0003746;translation elongation factor activity;0.0256147885482732!GO:0016251;general RNA polymerase II transcription factor activity;0.025743537792387!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0258726031722113!GO:0005975;carbohydrate metabolic process;0.0263546701050038!GO:0048518;positive regulation of biological process;0.0264302258671394!GO:0030131;clathrin adaptor complex;0.0264897696856853!GO:0030518;steroid hormone receptor signaling pathway;0.0266658142599353!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0268579870426267!GO:0007021;tubulin folding;0.0269881198555232!GO:0006144;purine base metabolic process;0.0276390157229031!GO:0019798;procollagen-proline dioxygenase activity;0.0284704370238408!GO:0007265;Ras protein signal transduction;0.0286692254052241!GO:0006607;NLS-bearing substrate import into nucleus;0.0289589640012755!GO:0006007;glucose catabolic process;0.0297212809768005!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0302364583090104!GO:0031543;peptidyl-proline dioxygenase activity;0.0303675634659821!GO:0006984;ER-nuclear signaling pathway;0.0305421199133612!GO:0032906;transforming growth factor-beta2 production;0.0306502943380924!GO:0032909;regulation of transforming growth factor-beta2 production;0.0306502943380924!GO:0003923;GPI-anchor transamidase activity;0.0315905068140436!GO:0016255;attachment of GPI anchor to protein;0.0315905068140436!GO:0042765;GPI-anchor transamidase complex;0.0315905068140436!GO:0035035;histone acetyltransferase binding;0.0318679242912744!GO:0007041;lysosomal transport;0.0321050044350745!GO:0006220;pyrimidine nucleotide metabolic process;0.0321966111399943!GO:0006518;peptide metabolic process;0.0322087235075413!GO:0031123;RNA 3'-end processing;0.0322506019725769!GO:0048144;fibroblast proliferation;0.0324406979225855!GO:0048145;regulation of fibroblast proliferation;0.0324406979225855!GO:0003756;protein disulfide isomerase activity;0.0324406979225855!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0324406979225855!GO:0030496;midbody;0.0324763396657945!GO:0008154;actin polymerization and/or depolymerization;0.0329909101748654!GO:0004003;ATP-dependent DNA helicase activity;0.0330930733308605!GO:0050750;low-density lipoprotein receptor binding;0.0341245642189398!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0342425239582323!GO:0033043;regulation of organelle organization and biogenesis;0.0342425239582323!GO:0048468;cell development;0.0347951963206336!GO:0006378;mRNA polyadenylation;0.0348186446635635!GO:0005784;translocon complex;0.0352894526173241!GO:0006778;porphyrin metabolic process;0.0357612930250182!GO:0033013;tetrapyrrole metabolic process;0.0357612930250182!GO:0005856;cytoskeleton;0.0359094774048553!GO:0008234;cysteine-type peptidase activity;0.0359125034063387!GO:0008147;structural constituent of bone;0.0363741612075941!GO:0007059;chromosome segregation;0.0364479545321186!GO:0008538;proteasome activator activity;0.0367680140250064!GO:0030508;thiol-disulfide exchange intermediate activity;0.0367680140250064!GO:0032984;macromolecular complex disassembly;0.0367787532502674!GO:0045334;clathrin-coated endocytic vesicle;0.0371181002951959!GO:0048146;positive regulation of fibroblast proliferation;0.0374732775481924!GO:0044437;vacuolar part;0.0381721052704096!GO:0043130;ubiquitin binding;0.0383640367468893!GO:0032182;small conjugating protein binding;0.0383640367468893!GO:0019206;nucleoside kinase activity;0.0384550462647224!GO:0005586;collagen type III;0.0391974939088061!GO:0006118;electron transport;0.0395062186626581!GO:0016481;negative regulation of transcription;0.0399624427576543!GO:0051098;regulation of binding;0.0400875584218275!GO:0005801;cis-Golgi network;0.0404495336996174!GO:0006661;phosphatidylinositol biosynthetic process;0.0410613031301549!GO:0044420;extracellular matrix part;0.0419788626549714!GO:0008097;5S rRNA binding;0.0419788626549714!GO:0031418;L-ascorbic acid binding;0.0419899346213489!GO:0008286;insulin receptor signaling pathway;0.0419988327156551!GO:0006417;regulation of translation;0.042605336119856!GO:0030911;TPR domain binding;0.0437335665942761!GO:0007017;microtubule-based process;0.0437839653791161!GO:0043034;costamere;0.0437839653791161!GO:0051336;regulation of hydrolase activity;0.0437839653791161!GO:0009225;nucleotide-sugar metabolic process;0.0452565604047711!GO:0043624;cellular protein complex disassembly;0.0457481028253986!GO:0016790;thiolester hydrolase activity;0.0459900470791451!GO:0031970;organelle envelope lumen;0.0460025515324289!GO:0005583;fibrillar collagen;0.0475893822716174!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0477646460854351!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0481774278309695!GO:0005876;spindle microtubule;0.0482216302396825!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0486121140690915!GO:0031371;ubiquitin conjugating enzyme complex;0.0486121140690915!GO:0005665;DNA-directed RNA polymerase II, core complex;0.048862928420946!GO:0008637;apoptotic mitochondrial changes;0.0494612822648242 | |||
|sample_id=11315 | |sample_id=11315 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=brain | |sample_tissue=brain | ||
|top_motifs=SRF:1.64616260801;NR3C1:1.57367511155;TAL1_TCF{3,4,12}:1.50736373324;HMGA1,2:1.4831589916;MYBL2:1.25676135161;ADNP_IRX_SIX_ZHX:1.21291405238;TEAD1:1.19226113344;AIRE:1.09851602589;NKX2-3_NKX2-5:1.00685141824;POU1F1:1.00471557097;TFAP4:1.00271117125;ALX4:1.00116186304;POU3F1..4:0.987507804935;HSF1,2:0.975523551859;ZNF384:0.954000557805;GFI1B:0.901931368625;EVI1:0.8682485752;GLI1..3:0.821942289249;HOX{A5,B5}:0.8066977564;IKZF1:0.794934115052;GZF1:0.785465994573;NFATC1..3:0.764434071597;SOX17:0.743254403738;GFI1:0.725725354954;ATF6:0.704124042173;LHX3,4:0.690282034534;SREBF1,2:0.678320367404;EBF1:0.650194878511;EN1,2:0.64173831225;PAX5:0.64040092758;TFCP2:0.579429572678;HOXA9_MEIS1:0.544262259054;PDX1:0.540568579615;TEF:0.537949286387;GTF2A1,2:0.526425107093;bHLH_family:0.518549985348;NKX2-1,4:0.510619274808;FOXL1:0.481766020666;MAZ:0.474589566787;ZIC1..3:0.455448695526;NFE2L1:0.438649328757;TLX1..3_NFIC{dimer}:0.433381300806;DBP:0.421510956273;POU5F1:0.419693613051;NKX2-2,8:0.410678877117;ARID5B:0.3839258045;NFY{A,B,C}:0.375500848484;ESRRA:0.35263111966;NHLH1,2:0.352619061943;AHR_ARNT_ARNT2:0.34803943669;FOXD3:0.346840994917;MZF1:0.340284501055;RXR{A,B,G}:0.331059211354;LEF1_TCF7_TCF7L1,2:0.323802701197;SP1:0.321934446189;NKX6-1,2:0.319594596325;STAT1,3:0.314439879769;ZNF143:0.314341118622;GTF2I:0.300509730469;NKX3-1:0.299090169373;HES1:0.272068048363;STAT5{A,B}:0.2668733279;NKX3-2:0.25645832571;GATA4:0.249577398111;NRF1:0.24902936025;TGIF1:0.235665735745;UFEwm:0.233590591676;MTE{core}:0.228229382758;CDC5L:0.224137668119;FOXA2:0.207109788295;SOX2:0.204320626546;TFDP1:0.201350403979;HNF1A:0.17789992932;NFE2L2:0.151604382317;E2F1..5:0.146519314413;KLF4:0.141773182069;ZBTB6:0.135885360512;HBP1_HMGB_SSRP1_UBTF:0.133291281685;MEF2{A,B,C,D}:0.133122373396;TBP:0.131246790243;HOX{A4,D4}:0.128217518315;TBX4,5:0.124411246793;MAFB:0.119291896421;TP53:0.114572077366;PAX3,7:0.0985738227399;HIC1:0.0921541880083;TFAP2{A,C}:0.0898055352045;IRF7:0.0866219248887;ELK1,4_GABP{A,B1}:0.0830241751038;NR6A1:0.0819448108975;FOSL2:0.0560974210356;ZNF238:0.0433912036727;PATZ1:0.0415986774784;HMX1:0.0399439482522;PRDM1:0.0345191682485;HNF4A_NR2F1,2:0.0262493403857;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0256463611553;PAX8:0.0255373026732;ZFP161:0.0247909660841;ONECUT1,2:0.0174378858407;LMO2:0.00707829455479;PAX1,9:0.00546042899398;NFIX:0.00434125606079;MYB:-0.000470762004214;PAX6:-0.00854110855443;HLF:-0.0117672080065;IRF1,2:-0.0194234569984;PAX2:-0.0289613522857;BACH2:-0.0350603582822;ZNF423:-0.0366892667145;RUNX1..3:-0.046512603673;YY1:-0.0534132979149;FOXP1:-0.0635097698057;ZNF148:-0.0642912127941;ELF1,2,4:-0.0701078429188;XCPE1{core}:-0.0806003322273;XBP1:-0.0817583364477;JUN:-0.0848109417625;PRRX1,2:-0.0882406872335;ZBTB16:-0.106245989278;FOXM1:-0.10718634002;RFX1:-0.110132822785;ATF2:-0.119642218763;IKZF2:-0.129628951287;MYFfamily:-0.139813066062;FOS_FOS{B,L1}_JUN{B,D}:-0.143035491675;NANOG{mouse}:-0.155428306367;TFAP2B:-0.162455267082;CDX1,2,4:-0.16778541466;T:-0.18774187074;NFE2:-0.213673597716;CRX:-0.218048216335;GATA6:-0.229362405739;FOX{I1,J2}:-0.245302937362;SOX5:-0.251956435926;NANOG:-0.252545569628;GCM1,2:-0.255232416463;RBPJ:-0.260388996276;PPARG:-0.262440887934;SMAD1..7,9:-0.264892983293;STAT2,4,6:-0.274523875095;EGR1..3:-0.291855733567;SOX{8,9,10}:-0.292967088144;DMAP1_NCOR{1,2}_SMARC:-0.297195454835;MTF1:-0.305649404011;MED-1{core}:-0.313706650944;ALX1:-0.318484794877;RREB1:-0.327215710922;FOXP3:-0.328886472983;NR1H4:-0.335183152112;ETS1,2:-0.336146248603;HIF1A:-0.339728048865;REST:-0.342791621126;BPTF:-0.348017251924;AR:-0.355030124661;CREB1:-0.355932552582;TLX2:-0.369911449393;FOX{D1,D2}:-0.40680986213;NFKB1_REL_RELA:-0.422413203754;HAND1,2:-0.423306218523;OCT4_SOX2{dimer}:-0.428269466053;HOX{A6,A7,B6,B7}:-0.428882381078;PBX1:-0.43379033485;ESR1:-0.439593452273;FOXN1:-0.460826791043;CEBPA,B_DDIT3:-0.482130789846;SPZ1:-0.483049566737;PAX4:-0.487120172232;RXRA_VDR{dimer}:-0.494842875577;SNAI1..3:-0.503794888382;MYOD1:-0.510406661104;NR5A1,2:-0.516856074868;ATF5_CREB3:-0.525055321728;FOX{F1,F2,J1}:-0.539716822784;SPIB:-0.540258210343;EP300:-0.552317083903;SPI1:-0.553982728614;RORA:-0.555007688786;BREu{core}:-0.556860124094;RFX2..5_RFXANK_RFXAP:-0.562270413441;CUX2:-0.566536452775;POU2F1..3:-0.641396597372;ATF4:-0.650878372679;FOXO1,3,4:-0.680383724375;NFIL3:-0.68916263905;VSX1,2:-0.745195906519;TOPORS:-0.824338057453;PITX1..3:-0.855943502059;ZEB1:-0.874917037203;FOXQ1:-0.954416788883;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.977625254196;POU6F1:-1.27606216313 | |top_motifs=SRF:1.64616260801;NR3C1:1.57367511155;TAL1_TCF{3,4,12}:1.50736373324;HMGA1,2:1.4831589916;MYBL2:1.25676135161;ADNP_IRX_SIX_ZHX:1.21291405238;TEAD1:1.19226113344;AIRE:1.09851602589;NKX2-3_NKX2-5:1.00685141824;POU1F1:1.00471557097;TFAP4:1.00271117125;ALX4:1.00116186304;POU3F1..4:0.987507804935;HSF1,2:0.975523551859;ZNF384:0.954000557805;GFI1B:0.901931368625;EVI1:0.8682485752;GLI1..3:0.821942289249;HOX{A5,B5}:0.8066977564;IKZF1:0.794934115052;GZF1:0.785465994573;NFATC1..3:0.764434071597;SOX17:0.743254403738;GFI1:0.725725354954;ATF6:0.704124042173;LHX3,4:0.690282034534;SREBF1,2:0.678320367404;EBF1:0.650194878511;EN1,2:0.64173831225;PAX5:0.64040092758;TFCP2:0.579429572678;HOXA9_MEIS1:0.544262259054;PDX1:0.540568579615;TEF:0.537949286387;GTF2A1,2:0.526425107093;bHLH_family:0.518549985348;NKX2-1,4:0.510619274808;FOXL1:0.481766020666;MAZ:0.474589566787;ZIC1..3:0.455448695526;NFE2L1:0.438649328757;TLX1..3_NFIC{dimer}:0.433381300806;DBP:0.421510956273;POU5F1:0.419693613051;NKX2-2,8:0.410678877117;ARID5B:0.3839258045;NFY{A,B,C}:0.375500848484;ESRRA:0.35263111966;NHLH1,2:0.352619061943;AHR_ARNT_ARNT2:0.34803943669;FOXD3:0.346840994917;MZF1:0.340284501055;RXR{A,B,G}:0.331059211354;LEF1_TCF7_TCF7L1,2:0.323802701197;SP1:0.321934446189;NKX6-1,2:0.319594596325;STAT1,3:0.314439879769;ZNF143:0.314341118622;GTF2I:0.300509730469;NKX3-1:0.299090169373;HES1:0.272068048363;STAT5{A,B}:0.2668733279;NKX3-2:0.25645832571;GATA4:0.249577398111;NRF1:0.24902936025;TGIF1:0.235665735745;UFEwm:0.233590591676;MTE{core}:0.228229382758;CDC5L:0.224137668119;FOXA2:0.207109788295;SOX2:0.204320626546;TFDP1:0.201350403979;HNF1A:0.17789992932;NFE2L2:0.151604382317;E2F1..5:0.146519314413;KLF4:0.141773182069;ZBTB6:0.135885360512;HBP1_HMGB_SSRP1_UBTF:0.133291281685;MEF2{A,B,C,D}:0.133122373396;TBP:0.131246790243;HOX{A4,D4}:0.128217518315;TBX4,5:0.124411246793;MAFB:0.119291896421;TP53:0.114572077366;PAX3,7:0.0985738227399;HIC1:0.0921541880083;TFAP2{A,C}:0.0898055352045;IRF7:0.0866219248887;ELK1,4_GABP{A,B1}:0.0830241751038;NR6A1:0.0819448108975;FOSL2:0.0560974210356;ZNF238:0.0433912036727;PATZ1:0.0415986774784;HMX1:0.0399439482522;PRDM1:0.0345191682485;HNF4A_NR2F1,2:0.0262493403857;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0256463611553;PAX8:0.0255373026732;ZFP161:0.0247909660841;ONECUT1,2:0.0174378858407;LMO2:0.00707829455479;PAX1,9:0.00546042899398;NFIX:0.00434125606079;MYB:-0.000470762004214;PAX6:-0.00854110855443;HLF:-0.0117672080065;IRF1,2:-0.0194234569984;PAX2:-0.0289613522857;BACH2:-0.0350603582822;ZNF423:-0.0366892667145;RUNX1..3:-0.046512603673;YY1:-0.0534132979149;FOXP1:-0.0635097698057;ZNF148:-0.0642912127941;ELF1,2,4:-0.0701078429188;XCPE1{core}:-0.0806003322273;XBP1:-0.0817583364477;JUN:-0.0848109417625;PRRX1,2:-0.0882406872335;ZBTB16:-0.106245989278;FOXM1:-0.10718634002;RFX1:-0.110132822785;ATF2:-0.119642218763;IKZF2:-0.129628951287;MYFfamily:-0.139813066062;FOS_FOS{B,L1}_JUN{B,D}:-0.143035491675;NANOG{mouse}:-0.155428306367;TFAP2B:-0.162455267082;CDX1,2,4:-0.16778541466;T:-0.18774187074;NFE2:-0.213673597716;CRX:-0.218048216335;GATA6:-0.229362405739;FOX{I1,J2}:-0.245302937362;SOX5:-0.251956435926;NANOG:-0.252545569628;GCM1,2:-0.255232416463;RBPJ:-0.260388996276;PPARG:-0.262440887934;SMAD1..7,9:-0.264892983293;STAT2,4,6:-0.274523875095;EGR1..3:-0.291855733567;SOX{8,9,10}:-0.292967088144;DMAP1_NCOR{1,2}_SMARC:-0.297195454835;MTF1:-0.305649404011;MED-1{core}:-0.313706650944;ALX1:-0.318484794877;RREB1:-0.327215710922;FOXP3:-0.328886472983;NR1H4:-0.335183152112;ETS1,2:-0.336146248603;HIF1A:-0.339728048865;REST:-0.342791621126;BPTF:-0.348017251924;AR:-0.355030124661;CREB1:-0.355932552582;TLX2:-0.369911449393;FOX{D1,D2}:-0.40680986213;NFKB1_REL_RELA:-0.422413203754;HAND1,2:-0.423306218523;OCT4_SOX2{dimer}:-0.428269466053;HOX{A6,A7,B6,B7}:-0.428882381078;PBX1:-0.43379033485;ESR1:-0.439593452273;FOXN1:-0.460826791043;CEBPA,B_DDIT3:-0.482130789846;SPZ1:-0.483049566737;PAX4:-0.487120172232;RXRA_VDR{dimer}:-0.494842875577;SNAI1..3:-0.503794888382;MYOD1:-0.510406661104;NR5A1,2:-0.516856074868;ATF5_CREB3:-0.525055321728;FOX{F1,F2,J1}:-0.539716822784;SPIB:-0.540258210343;EP300:-0.552317083903;SPI1:-0.553982728614;RORA:-0.555007688786;BREu{core}:-0.556860124094;RFX2..5_RFXANK_RFXAP:-0.562270413441;CUX2:-0.566536452775;POU2F1..3:-0.641396597372;ATF4:-0.650878372679;FOXO1,3,4:-0.680383724375;NFIL3:-0.68916263905;VSX1,2:-0.745195906519;TOPORS:-0.824338057453;PITX1..3:-0.855943502059;ZEB1:-0.874917037203;FOXQ1:-0.954416788883;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.977625254196;POU6F1:-1.27606216313 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11315-117D1;search_select_hide=table117:FF:11315-117D1 | |||
}} | }} | ||
Latest revision as of 16:32, 3 June 2020
| Name: | Smooth Muscle Cells - Brain Vascular, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11900 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11900
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11900
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.069 |
| 10 | 10 | 0.216 |
| 100 | 100 | 0.748 |
| 101 | 101 | 0.874 |
| 102 | 102 | 0.0375 |
| 103 | 103 | 0.475 |
| 104 | 104 | 0.909 |
| 105 | 105 | 0.469 |
| 106 | 106 | 0.0245 |
| 107 | 107 | 0.291 |
| 108 | 108 | 0.0642 |
| 109 | 109 | 0.299 |
| 11 | 11 | 0.441 |
| 110 | 110 | 0.698 |
| 111 | 111 | 0.031 |
| 112 | 112 | 0.167 |
| 113 | 113 | 0.513 |
| 114 | 114 | 0.321 |
| 115 | 115 | 0.322 |
| 116 | 116 | 0.476 |
| 117 | 117 | 0.384 |
| 118 | 118 | 0.294 |
| 119 | 119 | 0.789 |
| 12 | 12 | 0.0539 |
| 120 | 120 | 0.778 |
| 121 | 121 | 0.543 |
| 122 | 122 | 0.108 |
| 123 | 123 | 2.80521e-4 |
| 124 | 124 | 0.901 |
| 125 | 125 | 0.421 |
| 126 | 126 | 0.502 |
| 127 | 127 | 0.0856 |
| 128 | 128 | 0.373 |
| 129 | 129 | 0.878 |
| 13 | 13 | 0.304 |
| 130 | 130 | 0.095 |
| 131 | 131 | 0.151 |
| 132 | 132 | 0.752 |
| 133 | 133 | 0.042 |
| 134 | 134 | 0.28 |
| 135 | 135 | 0.506 |
| 136 | 136 | 0.63 |
| 137 | 137 | 0.0361 |
| 138 | 138 | 0.111 |
| 139 | 139 | 0.0821 |
| 14 | 14 | 0.375 |
| 140 | 140 | 0.0739 |
| 141 | 141 | 0.0249 |
| 142 | 142 | 0.969 |
| 143 | 143 | 0.134 |
| 144 | 144 | 0.964 |
| 145 | 145 | 0.619 |
| 146 | 146 | 0.145 |
| 147 | 147 | 0.196 |
| 148 | 148 | 0.13 |
| 149 | 149 | 0.377 |
| 15 | 15 | 0.474 |
| 150 | 150 | 0.375 |
| 151 | 151 | 0.398 |
| 152 | 152 | 0.432 |
| 153 | 153 | 0.494 |
| 154 | 154 | 0.393 |
| 155 | 155 | 5.49405e-4 |
| 156 | 156 | 0.319 |
| 157 | 157 | 0.0304 |
| 158 | 158 | 0.011 |
| 159 | 159 | 0.292 |
| 16 | 16 | 0.784 |
| 160 | 160 | 0.481 |
| 161 | 161 | 0.619 |
| 162 | 162 | 0.393 |
| 163 | 163 | 0.497 |
| 164 | 164 | 0.288 |
| 165 | 165 | 0.433 |
| 166 | 166 | 0.079 |
| 167 | 167 | 0.636 |
| 168 | 168 | 0.388 |
| 169 | 169 | 0.483 |
| 17 | 17 | 0.532 |
| 18 | 18 | 0.397 |
| 19 | 19 | 0.678 |
| 2 | 2 | 0.538 |
| 20 | 20 | 0.28 |
| 21 | 21 | 0.186 |
| 22 | 22 | 0.713 |
| 23 | 23 | 0.922 |
| 24 | 24 | 0.344 |
| 25 | 25 | 0.605 |
| 26 | 26 | 0.593 |
| 27 | 27 | 0.605 |
| 28 | 28 | 0.48 |
| 29 | 29 | 0.771 |
| 3 | 3 | 0.646 |
| 30 | 30 | 0.21 |
| 31 | 31 | 0.82 |
| 32 | 32 | 7.50093e-5 |
| 33 | 33 | 0.418 |
| 34 | 34 | 0.911 |
| 35 | 35 | 0.0328 |
| 36 | 36 | 0.374 |
| 37 | 37 | 0.468 |
| 38 | 38 | 0.344 |
| 39 | 39 | 0.607 |
| 4 | 4 | 0.15 |
| 40 | 40 | 0.386 |
| 41 | 41 | 0.0633 |
| 42 | 42 | 0.468 |
| 43 | 43 | 0.246 |
| 44 | 44 | 0.386 |
| 45 | 45 | 0.866 |
| 46 | 46 | 0.299 |
| 47 | 47 | 0.374 |
| 48 | 48 | 0.449 |
| 49 | 49 | 0.0864 |
| 5 | 5 | 0.784 |
| 50 | 50 | 0.677 |
| 51 | 51 | 0.433 |
| 52 | 52 | 0.718 |
| 53 | 53 | 0.224 |
| 54 | 54 | 0.966 |
| 55 | 55 | 0.373 |
| 56 | 56 | 0.563 |
| 57 | 57 | 0.974 |
| 58 | 58 | 0.0298 |
| 59 | 59 | 0.376 |
| 6 | 6 | 0.833 |
| 60 | 60 | 0.0616 |
| 61 | 61 | 0.475 |
| 62 | 62 | 0.052 |
| 63 | 63 | 0.184 |
| 64 | 64 | 0.324 |
| 65 | 65 | 0.415 |
| 66 | 66 | 0.186 |
| 67 | 67 | 0.778 |
| 68 | 68 | 0.377 |
| 69 | 69 | 0.891 |
| 7 | 7 | 0.527 |
| 70 | 70 | 0.0106 |
| 71 | 71 | 0.355 |
| 72 | 72 | 0.63 |
| 73 | 73 | 0.963 |
| 74 | 74 | 0.895 |
| 75 | 75 | 0.0434 |
| 76 | 76 | 0.35 |
| 77 | 77 | 0.387 |
| 78 | 78 | 0.51 |
| 79 | 79 | 0.663 |
| 8 | 8 | 0.847 |
| 80 | 80 | 0.655 |
| 81 | 81 | 0.612 |
| 82 | 82 | 0.0188 |
| 83 | 83 | 0.591 |
| 84 | 84 | 0.438 |
| 85 | 85 | 0.147 |
| 86 | 86 | 0.65 |
| 87 | 87 | 0.758 |
| 88 | 88 | 0.663 |
| 89 | 89 | 0.617 |
| 9 | 9 | 0.713 |
| 90 | 90 | 0.761 |
| 91 | 91 | 0.82 |
| 92 | 92 | 0.684 |
| 93 | 93 | 0.587 |
| 94 | 94 | 0.301 |
| 95 | 95 | 0.16 |
| 96 | 96 | 0.37 |
| 97 | 97 | 0.161 |
| 98 | 98 | 0.00735 |
| 99 | 99 | 0.00146 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11900
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000170 human smooth muscle cell of the brain vasculature sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002590 (smooth muscle cell of the brain vasculature)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0005284 (brain vasculature)
0002049 (vasculature)
0006876 (vasculature of organ)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001017 (central nervous system)
0001016 (nervous system)
0004535 (cardiovascular system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000170 (human smooth muscle cell of the brain vasculature sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
