FF:11316-117D2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005749 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005749 | ||
|accession_numbers=CAGE;DRX008116;DRR008988;DRZ000413;DRZ001798;DRZ011763;DRZ013148 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037077;DRR041443;DRZ007085 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0000956,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000095,CL:0000243,CL:0000128,CL:0000126,CL:0000125,CL:0000255,CL:0000127,CL:0002605 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000194 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebral%2520cortex%252c%2520donor2.CNhs11960.11316-117D2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebral%2520cortex%252c%2520donor2.CNhs11960.11316-117D2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebral%2520cortex%252c%2520donor2.CNhs11960.11316-117D2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebral%2520cortex%252c%2520donor2.CNhs11960.11316-117D2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebral%2520cortex%252c%2520donor2.CNhs11960.11316-117D2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11316-117D2 | |id=FF:11316-117D2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000194 | ||
|is_obsolete= | |||
|library_id=CNhs11960 | |||
|library_id_phase_based=2:CNhs11960 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11316 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10006.CTTGTA.11316 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11316 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10006.CTTGTA.11316 | |||
|name=Astrocyte - cerebral cortex, donor2 | |name=Astrocyte - cerebral cortex, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11960,LSID836,release011,COMPLETED | |profile_hcage=CNhs11960,LSID836,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10006,,, | |profile_srnaseq=SRhi10006,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=SC1805 | |rna_catalog_number=SC1805 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=117D2 | |rna_tube_id=117D2 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10006.CTTGTA | |||
|sample_age=fetal | |sample_age=fetal | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.82509716159605e-281!GO:0043226;organelle;1.5087950533737e-230!GO:0043229;intracellular organelle;3.15659567357195e-230!GO:0043231;intracellular membrane-bound organelle;2.5092907956113e-222!GO:0043227;membrane-bound organelle;3.91937461877963e-222!GO:0005737;cytoplasm;3.39474813672872e-188!GO:0044422;organelle part;4.51684325770417e-163!GO:0044446;intracellular organelle part;1.30096024666668e-161!GO:0044444;cytoplasmic part;7.55824649498682e-120!GO:0032991;macromolecular complex;1.81670901582048e-114!GO:0005634;nucleus;2.13743110460565e-108!GO:0044237;cellular metabolic process;6.56733589566627e-96!GO:0044238;primary metabolic process;1.16008995933884e-95!GO:0030529;ribonucleoprotein complex;3.2627503815479e-92!GO:0043170;macromolecule metabolic process;2.01459717015676e-90!GO:0005515;protein binding;1.34709432678435e-86!GO:0044428;nuclear part;2.90187381265445e-82!GO:0043233;organelle lumen;3.25544027226366e-75!GO:0031974;membrane-enclosed lumen;3.25544027226366e-75!GO:0003723;RNA binding;5.53071041773516e-75!GO:0016043;cellular component organization and biogenesis;9.93653755877848e-69!GO:0005739;mitochondrion;6.58633524503952e-65!GO:0043234;protein complex;1.26265035741098e-59!GO:0043283;biopolymer metabolic process;2.64872101449241e-59!GO:0005840;ribosome;8.06005853747028e-55!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.1358549644355e-52!GO:0043228;non-membrane-bound organelle;3.31712001341717e-50!GO:0043232;intracellular non-membrane-bound organelle;3.31712001341717e-50!GO:0006396;RNA processing;4.29852121975152e-50!GO:0010467;gene expression;1.19734326493532e-49!GO:0031090;organelle membrane;2.6261133111324e-48!GO:0006996;organelle organization and biogenesis;4.32316031423574e-48!GO:0003735;structural constituent of ribosome;8.41721860692048e-48!GO:0006412;translation;1.2761808552326e-47!GO:0031981;nuclear lumen;3.9921585220494e-47!GO:0033036;macromolecule localization;2.58939685357661e-45!GO:0044429;mitochondrial part;1.08285793425419e-44!GO:0015031;protein transport;5.19438615793373e-44!GO:0006259;DNA metabolic process;7.42973005729536e-44!GO:0031967;organelle envelope;7.80322238941367e-44!GO:0031975;envelope;1.59182495486907e-43!GO:0019538;protein metabolic process;2.87972149875103e-43!GO:0016071;mRNA metabolic process;6.6445253768276e-42!GO:0008104;protein localization;3.6172721534193e-41!GO:0033279;ribosomal subunit;6.69970540857016e-41!GO:0046907;intracellular transport;1.37204539698944e-40!GO:0045184;establishment of protein localization;6.32599937928632e-40!GO:0008380;RNA splicing;1.17867188204071e-39!GO:0007049;cell cycle;3.94620656275817e-39!GO:0044260;cellular macromolecule metabolic process;1.82484094463124e-38!GO:0044267;cellular protein metabolic process;3.13370416975821e-38!GO:0009058;biosynthetic process;8.74717116274825e-38!GO:0044249;cellular biosynthetic process;1.42721350357948e-36!GO:0065003;macromolecular complex assembly;1.71497489014164e-36!GO:0006397;mRNA processing;4.06662885307017e-36!GO:0009059;macromolecule biosynthetic process;7.41068464105294e-36!GO:0005829;cytosol;2.61817883343971e-35!GO:0003676;nucleic acid binding;9.11559101702035e-34!GO:0022607;cellular component assembly;6.60956148937674e-33!GO:0000278;mitotic cell cycle;2.59792530378471e-31!GO:0006886;intracellular protein transport;3.58575344462143e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.49392406241854e-30!GO:0022402;cell cycle process;4.11228163907593e-30!GO:0005654;nucleoplasm;9.12764002451384e-30!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.2829483947021e-29!GO:0005740;mitochondrial envelope;5.17230504474083e-29!GO:0019866;organelle inner membrane;2.24353090607942e-28!GO:0000166;nucleotide binding;4.36410917040356e-28!GO:0005681;spliceosome;9.00056831316213e-28!GO:0005694;chromosome;1.51086094775926e-27!GO:0031966;mitochondrial membrane;2.82889812456191e-27!GO:0051649;establishment of cellular localization;7.44429910284817e-27!GO:0051641;cellular localization;1.35732964171153e-26!GO:0005743;mitochondrial inner membrane;6.30037722510554e-26!GO:0044427;chromosomal part;8.0145207749892e-26!GO:0022403;cell cycle phase;2.17825982569006e-25!GO:0000087;M phase of mitotic cell cycle;3.32666449520983e-25!GO:0007067;mitosis;7.33133181394713e-25!GO:0016070;RNA metabolic process;3.14045493917684e-24!GO:0044451;nucleoplasm part;5.26788728092073e-24!GO:0044445;cytosolic part;1.04786300306226e-23!GO:0051276;chromosome organization and biogenesis;1.30368076675347e-23!GO:0051301;cell division;2.17399545633632e-23!GO:0006974;response to DNA damage stimulus;2.24376567994037e-23!GO:0016462;pyrophosphatase activity;1.77007106115538e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.44833193949914e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;3.60426839013658e-22!GO:0017111;nucleoside-triphosphatase activity;6.23479055120562e-22!GO:0006119;oxidative phosphorylation;1.16009302561899e-21!GO:0000279;M phase;2.04867153578261e-21!GO:0015934;large ribosomal subunit;3.92127331564913e-21!GO:0015935;small ribosomal subunit;7.56799421896989e-21!GO:0012505;endomembrane system;7.1372781339658e-20!GO:0044455;mitochondrial membrane part;1.08994729622198e-19!GO:0006281;DNA repair;1.29528722360671e-19!GO:0031980;mitochondrial lumen;2.53195901758455e-19!GO:0005759;mitochondrial matrix;2.53195901758455e-19!GO:0016874;ligase activity;2.77637167113204e-19!GO:0032553;ribonucleotide binding;3.01214362739802e-19!GO:0032555;purine ribonucleotide binding;3.01214362739802e-19!GO:0017076;purine nucleotide binding;1.46105545532213e-18!GO:0006325;establishment and/or maintenance of chromatin architecture;3.1277218030843e-18!GO:0006260;DNA replication;3.40253840995616e-18!GO:0006512;ubiquitin cycle;3.54137252786703e-18!GO:0006457;protein folding;4.84326053639745e-18!GO:0022618;protein-RNA complex assembly;7.08427766206817e-18!GO:0006323;DNA packaging;1.93943611995431e-17!GO:0048770;pigment granule;5.31171991501143e-17!GO:0042470;melanosome;5.31171991501143e-17!GO:0005524;ATP binding;5.62322166004272e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.08476067282762e-16!GO:0005746;mitochondrial respiratory chain;1.16339595285135e-16!GO:0044265;cellular macromolecule catabolic process;1.3777968678404e-16!GO:0032559;adenyl ribonucleotide binding;1.46015002614472e-16!GO:0006605;protein targeting;1.69702262721897e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.85344388273175e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;2.3182936332064e-16!GO:0005730;nucleolus;2.64802644552622e-16!GO:0019941;modification-dependent protein catabolic process;3.57046749698122e-16!GO:0043632;modification-dependent macromolecule catabolic process;3.57046749698122e-16!GO:0006511;ubiquitin-dependent protein catabolic process;4.00932862456446e-16!GO:0009719;response to endogenous stimulus;5.22286061317212e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.05289465359248e-16!GO:0044257;cellular protein catabolic process;7.75780544676758e-16!GO:0030554;adenyl nucleotide binding;9.66527677101412e-16!GO:0050136;NADH dehydrogenase (quinone) activity;1.43741120235974e-15!GO:0003954;NADH dehydrogenase activity;1.43741120235974e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.43741120235974e-15!GO:0015630;microtubule cytoskeleton;1.74039305373157e-15!GO:0031965;nuclear membrane;1.74192836118747e-15!GO:0005635;nuclear envelope;1.74192836118747e-15!GO:0008134;transcription factor binding;3.40606966518815e-15!GO:0005794;Golgi apparatus;5.44309263705069e-15!GO:0005761;mitochondrial ribosome;6.87832332675684e-15!GO:0000313;organellar ribosome;6.87832332675684e-15!GO:0008135;translation factor activity, nucleic acid binding;6.97970627884197e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.91822009391835e-15!GO:0043285;biopolymer catabolic process;8.00114271807781e-15!GO:0044453;nuclear membrane part;8.97283504870291e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;3.39618497807375e-14!GO:0000375;RNA splicing, via transesterification reactions;3.39618497807375e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.39618497807375e-14!GO:0051186;cofactor metabolic process;3.91406106888272e-14!GO:0009057;macromolecule catabolic process;4.98137593124025e-14!GO:0051726;regulation of cell cycle;9.42091262772433e-14!GO:0043412;biopolymer modification;1.18057891193962e-13!GO:0000074;regulation of progression through cell cycle;1.24475863221e-13!GO:0030163;protein catabolic process;1.49748239608848e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.76821108616181e-13!GO:0045271;respiratory chain complex I;1.76821108616181e-13!GO:0005747;mitochondrial respiratory chain complex I;1.76821108616181e-13!GO:0065004;protein-DNA complex assembly;1.82897945200127e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.86462732597604e-13!GO:0042773;ATP synthesis coupled electron transport;1.86462732597604e-13!GO:0000785;chromatin;2.29004454523293e-13!GO:0006913;nucleocytoplasmic transport;3.57929427443288e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.92186664627894e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.71427620486371e-13!GO:0044248;cellular catabolic process;5.73100782568444e-13!GO:0005783;endoplasmic reticulum;5.77871351836469e-13!GO:0006333;chromatin assembly or disassembly;6.36812110586021e-13!GO:0005643;nuclear pore;7.2726977922013e-13!GO:0050794;regulation of cellular process;1.09947992583426e-12!GO:0051169;nuclear transport;1.11115699827711e-12!GO:0051082;unfolded protein binding;1.80290929889524e-12!GO:0006464;protein modification process;2.8445216366933e-12!GO:0048193;Golgi vesicle transport;2.9796419758104e-12!GO:0016604;nuclear body;3.69919390214006e-12!GO:0042254;ribosome biogenesis and assembly;4.50498869933922e-12!GO:0044432;endoplasmic reticulum part;7.84628091895508e-12!GO:0016887;ATPase activity;8.09272616197051e-12!GO:0042623;ATPase activity, coupled;8.70985860415314e-12!GO:0003743;translation initiation factor activity;1.50530107975427e-11!GO:0006732;coenzyme metabolic process;1.50839586441088e-11!GO:0000775;chromosome, pericentric region;1.86319191844875e-11!GO:0006403;RNA localization;3.94415506481062e-11!GO:0006413;translational initiation;4.02549332065543e-11!GO:0043687;post-translational protein modification;4.42501506716563e-11!GO:0006334;nucleosome assembly;5.09654502155136e-11!GO:0050657;nucleic acid transport;7.98523209142956e-11!GO:0051236;establishment of RNA localization;7.98523209142956e-11!GO:0050658;RNA transport;7.98523209142956e-11!GO:0004386;helicase activity;1.32782003482156e-10!GO:0009055;electron carrier activity;1.57159413106105e-10!GO:0065002;intracellular protein transport across a membrane;1.69306071678456e-10!GO:0016192;vesicle-mediated transport;1.71896204049665e-10!GO:0005819;spindle;1.870345960305e-10!GO:0008639;small protein conjugating enzyme activity;3.16805676380308e-10!GO:0031497;chromatin assembly;3.50228686856503e-10!GO:0046930;pore complex;4.90350565671754e-10!GO:0016607;nuclear speck;5.69190198925251e-10!GO:0004842;ubiquitin-protein ligase activity;6.20161931123889e-10!GO:0008565;protein transporter activity;6.65977076912954e-10!GO:0006366;transcription from RNA polymerase II promoter;6.84411958283491e-10!GO:0006446;regulation of translational initiation;8.48984605921977e-10!GO:0017038;protein import;1.16182056253336e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.22794721224764e-09!GO:0019787;small conjugating protein ligase activity;1.37181769474647e-09!GO:0048523;negative regulation of cellular process;1.42302705591804e-09!GO:0006461;protein complex assembly;1.58569882055451e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.60426697921955e-09!GO:0009259;ribonucleotide metabolic process;2.22919127109365e-09!GO:0003712;transcription cofactor activity;2.38660168057494e-09!GO:0050789;regulation of biological process;2.44692817477205e-09!GO:0006163;purine nucleotide metabolic process;2.96400371680222e-09!GO:0006399;tRNA metabolic process;3.85951024181866e-09!GO:0051028;mRNA transport;4.73025605375742e-09!GO:0030532;small nuclear ribonucleoprotein complex;6.91711329700441e-09!GO:0005793;ER-Golgi intermediate compartment;9.65507436034109e-09!GO:0007010;cytoskeleton organization and biogenesis;9.81243695491742e-09!GO:0009060;aerobic respiration;1.02086949354501e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.06212534605301e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.1407992487686e-08!GO:0016881;acid-amino acid ligase activity;1.18570077466635e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.18749665642538e-08!GO:0016568;chromatin modification;1.18749665642538e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.33616726825842e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.33616726825842e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.33616726825842e-08!GO:0003697;single-stranded DNA binding;1.35970638646887e-08!GO:0006164;purine nucleotide biosynthetic process;1.51904234692559e-08!GO:0009150;purine ribonucleotide metabolic process;1.74275297944024e-08!GO:0005789;endoplasmic reticulum membrane;1.86282339442497e-08!GO:0045333;cellular respiration;2.24117191861987e-08!GO:0008026;ATP-dependent helicase activity;2.2890166757093e-08!GO:0006364;rRNA processing;2.40652078850408e-08!GO:0006261;DNA-dependent DNA replication;2.90737972686315e-08!GO:0009260;ribonucleotide biosynthetic process;3.15147723534759e-08!GO:0043566;structure-specific DNA binding;3.3253915587073e-08!GO:0043038;amino acid activation;3.38196948772088e-08!GO:0006418;tRNA aminoacylation for protein translation;3.38196948772088e-08!GO:0043039;tRNA aminoacylation;3.38196948772088e-08!GO:0003924;GTPase activity;3.44377968558445e-08!GO:0012501;programmed cell death;3.65603004621799e-08!GO:0051329;interphase of mitotic cell cycle;3.9536978236849e-08!GO:0006915;apoptosis;5.44119302899066e-08!GO:0048519;negative regulation of biological process;5.65978281426981e-08!GO:0007051;spindle organization and biogenesis;6.05279308220977e-08!GO:0016072;rRNA metabolic process;6.89644958943874e-08!GO:0051325;interphase;8.4672867917213e-08!GO:0009152;purine ribonucleotide biosynthetic process;9.14143950889688e-08!GO:0009141;nucleoside triphosphate metabolic process;1.11557944049946e-07!GO:0015986;ATP synthesis coupled proton transport;1.24189721953392e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.24189721953392e-07!GO:0051188;cofactor biosynthetic process;1.37990442758673e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.51902530881064e-07!GO:0005813;centrosome;1.67157649440247e-07!GO:0000075;cell cycle checkpoint;1.67157649440247e-07!GO:0005874;microtubule;1.99508356733398e-07!GO:0019829;cation-transporting ATPase activity;2.11564812069111e-07!GO:0031324;negative regulation of cellular metabolic process;2.36077426604976e-07!GO:0016740;transferase activity;2.45273910642421e-07!GO:0009056;catabolic process;2.47123590105648e-07!GO:0005667;transcription factor complex;2.5940181337654e-07!GO:0019222;regulation of metabolic process;2.68922990932919e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.72851073957174e-07!GO:0009144;purine nucleoside triphosphate metabolic process;2.72851073957174e-07!GO:0005815;microtubule organizing center;2.88566987774491e-07!GO:0009142;nucleoside triphosphate biosynthetic process;3.03075164731756e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.03075164731756e-07!GO:0006099;tricarboxylic acid cycle;3.05997959389248e-07!GO:0046356;acetyl-CoA catabolic process;3.05997959389248e-07!GO:0051170;nuclear import;3.25988246254489e-07!GO:0008219;cell death;3.34808678962768e-07!GO:0016265;death;3.34808678962768e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.51974067389694e-07!GO:0007005;mitochondrion organization and biogenesis;3.58524132474334e-07!GO:0031252;leading edge;3.77091089843823e-07!GO:0032446;protein modification by small protein conjugation;3.96659683515376e-07!GO:0048475;coated membrane;4.41807773662642e-07!GO:0030117;membrane coat;4.41807773662642e-07!GO:0044431;Golgi apparatus part;5.12217873288771e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.50551142588391e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.50551142588391e-07!GO:0006606;protein import into nucleus;5.95822527463167e-07!GO:0006084;acetyl-CoA metabolic process;6.50928857624671e-07!GO:0016567;protein ubiquitination;8.00029241262302e-07!GO:0006888;ER to Golgi vesicle-mediated transport;8.00029241262302e-07!GO:0000245;spliceosome assembly;8.27406432513778e-07!GO:0043623;cellular protein complex assembly;9.04495800814592e-07!GO:0009892;negative regulation of metabolic process;9.35482114141035e-07!GO:0046034;ATP metabolic process;1.13950661679273e-06!GO:0045259;proton-transporting ATP synthase complex;1.40876853511127e-06!GO:0008094;DNA-dependent ATPase activity;1.42265299177101e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.4704032940312e-06!GO:0005657;replication fork;1.4704032940312e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.47687582952011e-06!GO:0000776;kinetochore;1.53549843470525e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.74663066487091e-06!GO:0007059;chromosome segregation;1.92150274575081e-06!GO:0006754;ATP biosynthetic process;1.93780198373971e-06!GO:0006753;nucleoside phosphate metabolic process;1.93780198373971e-06!GO:0006793;phosphorus metabolic process;2.42186696544131e-06!GO:0006796;phosphate metabolic process;2.42186696544131e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.42891884548521e-06!GO:0045786;negative regulation of progression through cell cycle;2.45159717568237e-06!GO:0030120;vesicle coat;2.80980526440547e-06!GO:0030662;coated vesicle membrane;2.80980526440547e-06!GO:0009109;coenzyme catabolic process;2.84097213176627e-06!GO:0007017;microtubule-based process;3.35952540595087e-06!GO:0008092;cytoskeletal protein binding;3.79675333341094e-06!GO:0006752;group transfer coenzyme metabolic process;4.03317083908227e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;4.13887078340827e-06!GO:0051246;regulation of protein metabolic process;4.45151342702059e-06!GO:0051187;cofactor catabolic process;4.83018083296842e-06!GO:0016779;nucleotidyltransferase activity;5.09430193282247e-06!GO:0005768;endosome;5.11385948985826e-06!GO:0005762;mitochondrial large ribosomal subunit;5.15624651016012e-06!GO:0000315;organellar large ribosomal subunit;5.15624651016012e-06!GO:0009108;coenzyme biosynthetic process;5.35040464882271e-06!GO:0016363;nuclear matrix;5.9976101247608e-06!GO:0016310;phosphorylation;6.0280922720657e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.7148535404939e-06!GO:0000151;ubiquitin ligase complex;8.27128887832588e-06!GO:0015078;hydrogen ion transmembrane transporter activity;9.10463132863211e-06!GO:0009117;nucleotide metabolic process;9.45337656287239e-06!GO:0016481;negative regulation of transcription;9.56419750776758e-06!GO:0000786;nucleosome;1.23207118636893e-05!GO:0003724;RNA helicase activity;1.53300241401906e-05!GO:0004298;threonine endopeptidase activity;1.58252369975391e-05!GO:0006613;cotranslational protein targeting to membrane;1.59207452343614e-05!GO:0000139;Golgi membrane;1.70537200756883e-05!GO:0016564;transcription repressor activity;1.80502149976567e-05!GO:0008361;regulation of cell size;1.89519098442755e-05!GO:0051168;nuclear export;2.11268245275967e-05!GO:0016049;cell growth;2.19248812951292e-05!GO:0005525;GTP binding;2.3748890812592e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.3748890812592e-05!GO:0051427;hormone receptor binding;3.0752013629593e-05!GO:0030036;actin cytoskeleton organization and biogenesis;3.31141403208558e-05!GO:0031988;membrane-bound vesicle;3.60129422829451e-05!GO:0007093;mitotic cell cycle checkpoint;3.71786682383364e-05!GO:0031323;regulation of cellular metabolic process;3.77362044048244e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;4.41522205441635e-05!GO:0007088;regulation of mitosis;4.43113182761131e-05!GO:0016023;cytoplasmic membrane-bound vesicle;4.63271135800466e-05!GO:0000226;microtubule cytoskeleton organization and biogenesis;4.8147537105206e-05!GO:0003899;DNA-directed RNA polymerase activity;4.90276221084792e-05!GO:0005788;endoplasmic reticulum lumen;5.35544302810317e-05!GO:0043069;negative regulation of programmed cell death;5.39970828766734e-05!GO:0016853;isomerase activity;5.68514225302257e-05!GO:0016126;sterol biosynthetic process;5.82870017750293e-05!GO:0042981;regulation of apoptosis;6.13169041363344e-05!GO:0043067;regulation of programmed cell death;6.13370532295325e-05!GO:0003682;chromatin binding;6.33025454989524e-05!GO:0031982;vesicle;6.47087982244789e-05!GO:0035257;nuclear hormone receptor binding;6.85134293699981e-05!GO:0015980;energy derivation by oxidation of organic compounds;6.86183900821395e-05!GO:0043066;negative regulation of apoptosis;7.04601869021593e-05!GO:0006350;transcription;8.24380040913986e-05!GO:0005798;Golgi-associated vesicle;8.40288503544807e-05!GO:0003714;transcription corepressor activity;8.70669828180188e-05!GO:0031410;cytoplasmic vesicle;8.9631067775716e-05!GO:0044440;endosomal part;9.38450455237059e-05!GO:0010008;endosome membrane;9.38450455237059e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;9.40512690439169e-05!GO:0015631;tubulin binding;9.61333969577081e-05!GO:0005905;coated pit;9.87444933614985e-05!GO:0019899;enzyme binding;9.88548473825873e-05!GO:0001558;regulation of cell growth;0.000106253969389514!GO:0006302;double-strand break repair;0.000116702634469898!GO:0006916;anti-apoptosis;0.000124546397283559!GO:0005770;late endosome;0.000126817346852388!GO:0003684;damaged DNA binding;0.000139935928929424!GO:0016859;cis-trans isomerase activity;0.000150774094418117!GO:0043021;ribonucleoprotein binding;0.000157256772337104!GO:0000059;protein import into nucleus, docking;0.000157256772337104!GO:0008654;phospholipid biosynthetic process;0.0001856910110139!GO:0016563;transcription activator activity;0.000192428218756985!GO:0019843;rRNA binding;0.000203629167820074!GO:0048471;perinuclear region of cytoplasm;0.000204354629205018!GO:0007052;mitotic spindle organization and biogenesis;0.000209999677894141!GO:0003713;transcription coactivator activity;0.000211805111121497!GO:0006414;translational elongation;0.000226062515383179!GO:0000314;organellar small ribosomal subunit;0.000227880037340733!GO:0005763;mitochondrial small ribosomal subunit;0.000227880037340733!GO:0030867;rough endoplasmic reticulum membrane;0.000232192113064357!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000233373173995885!GO:0006695;cholesterol biosynthetic process;0.00024374227073144!GO:0030029;actin filament-based process;0.000247715718421809!GO:0065007;biological regulation;0.000256324009375122!GO:0045454;cell redox homeostasis;0.00029249427208576!GO:0032561;guanyl ribonucleotide binding;0.000302403862631026!GO:0019001;guanyl nucleotide binding;0.000302403862631026!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000302669327877891!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000317076208225197!GO:0003690;double-stranded DNA binding;0.000324695899169863!GO:0003729;mRNA binding;0.000325449691405401!GO:0051052;regulation of DNA metabolic process;0.000385247011073968!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000408502888221023!GO:0000902;cell morphogenesis;0.000412274367224294!GO:0032989;cellular structure morphogenesis;0.000412274367224294!GO:0005876;spindle microtubule;0.000431301892867982!GO:0006626;protein targeting to mitochondrion;0.000449879021995246!GO:0005885;Arp2/3 protein complex;0.000498703026888002!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000519966031599513!GO:0010468;regulation of gene expression;0.000519966031599513!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.000527336383511565!GO:0006310;DNA recombination;0.000564457562722625!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000585712589716932!GO:0008186;RNA-dependent ATPase activity;0.000589049050475877!GO:0004674;protein serine/threonine kinase activity;0.000619353394856469!GO:0016491;oxidoreductase activity;0.000632338521398618!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000658229516884002!GO:0000082;G1/S transition of mitotic cell cycle;0.000658792791780953!GO:0008250;oligosaccharyl transferase complex;0.000674074925888221!GO:0030027;lamellipodium;0.000775211907303539!GO:0051920;peroxiredoxin activity;0.000808128014571485!GO:0003678;DNA helicase activity;0.000834069710324155!GO:0016787;hydrolase activity;0.000846421677859118!GO:0006612;protein targeting to membrane;0.000871179441111697!GO:0004576;oligosaccharyl transferase activity;0.000873271605958458!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000873886511217967!GO:0005769;early endosome;0.000899370450608024!GO:0048468;cell development;0.000899375249883866!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000944126313110819!GO:0043681;protein import into mitochondrion;0.000974873825062303!GO:0005048;signal sequence binding;0.00101620165363611!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0010249999103287!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0010249999103287!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0010249999103287!GO:0031968;organelle outer membrane;0.0010517969594292!GO:0006839;mitochondrial transport;0.00106371902022729!GO:0006383;transcription from RNA polymerase III promoter;0.00126505986885281!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00132988999787377!GO:0001726;ruffle;0.00133024496863085!GO:0005741;mitochondrial outer membrane;0.00145511230330397!GO:0005637;nuclear inner membrane;0.00145777187024663!GO:0005875;microtubule associated complex;0.00153685544620675!GO:0006352;transcription initiation;0.00156769880569222!GO:0005684;U2-dependent spliceosome;0.00159409908564824!GO:0033116;ER-Golgi intermediate compartment membrane;0.00165639711020216!GO:0051252;regulation of RNA metabolic process;0.00165874135913043!GO:0004004;ATP-dependent RNA helicase activity;0.00167054580997978!GO:0006402;mRNA catabolic process;0.00168607508951061!GO:0030118;clathrin coat;0.00170764344160245!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00173105681461009!GO:0031072;heat shock protein binding;0.00178498379671675!GO:0019867;outer membrane;0.00189996413450002!GO:0000228;nuclear chromosome;0.00189996413450002!GO:0000910;cytokinesis;0.00204217719740191!GO:0016741;transferase activity, transferring one-carbon groups;0.00206913094175176!GO:0051789;response to protein stimulus;0.00210933679455775!GO:0006986;response to unfolded protein;0.00210933679455775!GO:0032774;RNA biosynthetic process;0.00212984144206423!GO:0032508;DNA duplex unwinding;0.00216283140988318!GO:0032392;DNA geometric change;0.00216283140988318!GO:0040008;regulation of growth;0.00226217645217455!GO:0018196;peptidyl-asparagine modification;0.00231964286971918!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00231964286971918!GO:0031124;mRNA 3'-end processing;0.00234795581455461!GO:0000792;heterochromatin;0.00236169365772413!GO:0006351;transcription, DNA-dependent;0.00259145324886862!GO:0051128;regulation of cellular component organization and biogenesis;0.00267908635824443!GO:0016044;membrane organization and biogenesis;0.00268123934825372!GO:0000922;spindle pole;0.00275839690101236!GO:0030521;androgen receptor signaling pathway;0.00287498275114319!GO:0048500;signal recognition particle;0.002915103920201!GO:0008168;methyltransferase activity;0.002915103920201!GO:0007006;mitochondrial membrane organization and biogenesis;0.002915103920201!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00295330524564985!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00295330524564985!GO:0006268;DNA unwinding during replication;0.00296945315186638!GO:0043624;cellular protein complex disassembly;0.00311970300980017!GO:0045892;negative regulation of transcription, DNA-dependent;0.00326872615736593!GO:0042802;identical protein binding;0.00340079761624543!GO:0009116;nucleoside metabolic process;0.00349728970218797!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00363636300631944!GO:0035258;steroid hormone receptor binding;0.00367912435629018!GO:0005791;rough endoplasmic reticulum;0.0037104401268445!GO:0008139;nuclear localization sequence binding;0.00388741775763896!GO:0000070;mitotic sister chromatid segregation;0.00404018295751644!GO:0030133;transport vesicle;0.0042312130015973!GO:0042393;histone binding;0.0042312130015973!GO:0032984;macromolecular complex disassembly;0.0042312130015973!GO:0000819;sister chromatid segregation;0.0042312130015973!GO:0008022;protein C-terminus binding;0.00423175900182621!GO:0043284;biopolymer biosynthetic process;0.00431840323137418!GO:0005856;cytoskeleton;0.00446036409553673!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00454956598156971!GO:0045893;positive regulation of transcription, DNA-dependent;0.00456234536070685!GO:0046474;glycerophospholipid biosynthetic process;0.00460196421821025!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00471755613505571!GO:0043488;regulation of mRNA stability;0.00479469735932405!GO:0043487;regulation of RNA stability;0.00479469735932405!GO:0048487;beta-tubulin binding;0.0048049580766777!GO:0003677;DNA binding;0.00492442113586961!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00492442113586961!GO:0015399;primary active transmembrane transporter activity;0.00492442113586961!GO:0006611;protein export from nucleus;0.00492442113586961!GO:0008312;7S RNA binding;0.00500565899342545!GO:0030658;transport vesicle membrane;0.00503457156179298!GO:0006338;chromatin remodeling;0.00533290951305204!GO:0030880;RNA polymerase complex;0.0053691690028848!GO:0017166;vinculin binding;0.0053766878120382!GO:0009165;nucleotide biosynthetic process;0.0053823560704218!GO:0044452;nucleolar part;0.0053823560704218!GO:0006595;polyamine metabolic process;0.0053823560704218!GO:0006275;regulation of DNA replication;0.00543357993504919!GO:0008180;signalosome;0.00554408235309794!GO:0030176;integral to endoplasmic reticulum membrane;0.0057597270634471!GO:0006284;base-excision repair;0.00586512338490288!GO:0000096;sulfur amino acid metabolic process;0.0061624081256702!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00645006652220621!GO:0006891;intra-Golgi vesicle-mediated transport;0.00651727048343981!GO:0043241;protein complex disassembly;0.00651727048343981!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00657444709465179!GO:0045047;protein targeting to ER;0.00657444709465179!GO:0007050;cell cycle arrest;0.00668529804271303!GO:0016197;endosome transport;0.00668529804271303!GO:0030663;COPI coated vesicle membrane;0.00673270068167441!GO:0030126;COPI vesicle coat;0.00673270068167441!GO:0006401;RNA catabolic process;0.00683679352636715!GO:0030119;AP-type membrane coat adaptor complex;0.00728137262997313!GO:0016251;general RNA polymerase II transcription factor activity;0.00730803965961773!GO:0008286;insulin receptor signaling pathway;0.00737830722383922!GO:0007346;regulation of progression through mitotic cell cycle;0.00741744747572633!GO:0008017;microtubule binding;0.00746594945108051!GO:0016584;nucleosome positioning;0.00760414513804246!GO:0006405;RNA export from nucleus;0.00766597768081353!GO:0045449;regulation of transcription;0.00797911649470367!GO:0044262;cellular carbohydrate metabolic process;0.00802209197432603!GO:0030134;ER to Golgi transport vesicle;0.00802209197432603!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00807216138229005!GO:0003746;translation elongation factor activity;0.00809862782662744!GO:0009112;nucleobase metabolic process;0.00843888985391994!GO:0048522;positive regulation of cellular process;0.00843888985391994!GO:0006091;generation of precursor metabolites and energy;0.00886219188226812!GO:0046483;heterocycle metabolic process;0.00892549181587852!GO:0043596;nuclear replication fork;0.00893095001569143!GO:0044454;nuclear chromosome part;0.0089337186200594!GO:0000209;protein polyubiquitination;0.00901016068334478!GO:0008033;tRNA processing;0.00925552105671477!GO:0045941;positive regulation of transcription;0.00934945145931653!GO:0030660;Golgi-associated vesicle membrane;0.00940122814134705!GO:0051087;chaperone binding;0.00940122814134705!GO:0005832;chaperonin-containing T-complex;0.00940122814134705!GO:0051287;NAD binding;0.00944292244465816!GO:0030137;COPI-coated vesicle;0.00955581832886574!GO:0007264;small GTPase mediated signal transduction;0.00995124870015192!GO:0030131;clathrin adaptor complex;0.0100092245016614!GO:0046467;membrane lipid biosynthetic process;0.0102075318996729!GO:0051539;4 iron, 4 sulfur cluster binding;0.0102732678266658!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0102951291244854!GO:0006289;nucleotide-excision repair;0.0102951291244854!GO:0015992;proton transport;0.0104847721526292!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0107614638950927!GO:0006818;hydrogen transport;0.0108707563752459!GO:0005869;dynactin complex;0.010900589742148!GO:0006007;glucose catabolic process;0.0109296572110763!GO:0005862;muscle thin filament tropomyosin;0.0110641488378337!GO:0051270;regulation of cell motility;0.0111301173834973!GO:0004527;exonuclease activity;0.0113196003889358!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0113523076703808!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0114174454929219!GO:0000428;DNA-directed RNA polymerase complex;0.0114174454929219!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0114716911153504!GO:0055083;monovalent inorganic anion homeostasis;0.0114716911153504!GO:0055064;chloride ion homeostasis;0.0114716911153504!GO:0030644;cellular chloride ion homeostasis;0.0114716911153504!GO:0000049;tRNA binding;0.0115835603888514!GO:0050681;androgen receptor binding;0.0118096449474438!GO:0006378;mRNA polyadenylation;0.0118335247558663!GO:0008629;induction of apoptosis by intracellular signals;0.0118335247558663!GO:0030127;COPII vesicle coat;0.0118432905292981!GO:0012507;ER to Golgi transport vesicle membrane;0.0118432905292981!GO:0042770;DNA damage response, signal transduction;0.0119190887078712!GO:0006144;purine base metabolic process;0.0119216367951875!GO:0003711;transcription elongation regulator activity;0.0119680963805644!GO:0031123;RNA 3'-end processing;0.0121174437065398!GO:0051540;metal cluster binding;0.0121980606438555!GO:0051536;iron-sulfur cluster binding;0.0121980606438555!GO:0030032;lamellipodium biogenesis;0.0126036128913088!GO:0003779;actin binding;0.0128118859084758!GO:0030132;clathrin coat of coated pit;0.0128118859084758!GO:0000793;condensed chromosome;0.0129129187076973!GO:0016272;prefoldin complex;0.0129129187076973!GO:0031570;DNA integrity checkpoint;0.0130628101519064!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0131806020786727!GO:0004003;ATP-dependent DNA helicase activity;0.0134134660319818!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0136155005216623!GO:0007243;protein kinase cascade;0.0137085932390611!GO:0032259;methylation;0.0138327786554053!GO:0006730;one-carbon compound metabolic process;0.0138327786554053!GO:0043414;biopolymer methylation;0.0138327786554053!GO:0005758;mitochondrial intermembrane space;0.0139049791246569!GO:0051656;establishment of organelle localization;0.0139910242065579!GO:0016408;C-acyltransferase activity;0.0139910242065579!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0141498470992651!GO:0031577;spindle checkpoint;0.0141903149444369!GO:0030145;manganese ion binding;0.0142031210312875!GO:0043022;ribosome binding;0.0143374560232095!GO:0008610;lipid biosynthetic process;0.014377962303682!GO:0046489;phosphoinositide biosynthetic process;0.014377962303682!GO:0006270;DNA replication initiation;0.0156510550287959!GO:0000118;histone deacetylase complex;0.0157115814727351!GO:0008047;enzyme activator activity;0.0159895469509036!GO:0006509;membrane protein ectodomain proteolysis;0.0163785464960944!GO:0033619;membrane protein proteolysis;0.0163785464960944!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0170786537485258!GO:0001725;stress fiber;0.0171253168506881!GO:0032432;actin filament bundle;0.0171253168506881!GO:0000725;recombinational repair;0.0173454585400244!GO:0000724;double-strand break repair via homologous recombination;0.0173454585400244!GO:0006720;isoprenoid metabolic process;0.0175517689006438!GO:0031529;ruffle organization and biogenesis;0.0181876125426415!GO:0030496;midbody;0.0187357747975289!GO:0000339;RNA cap binding;0.0190276094307844!GO:0006607;NLS-bearing substrate import into nucleus;0.0191099958954338!GO:0065009;regulation of a molecular function;0.019280868097162!GO:0031970;organelle envelope lumen;0.020073500202547!GO:0031902;late endosome membrane;0.0202720280134771!GO:0043130;ubiquitin binding;0.0208897190404858!GO:0032182;small conjugating protein binding;0.0208897190404858!GO:0000152;nuclear ubiquitin ligase complex;0.0208897190404858!GO:0031901;early endosome membrane;0.0209285038963335!GO:0006376;mRNA splice site selection;0.0211991885155961!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0211991885155961!GO:0030518;steroid hormone receptor signaling pathway;0.0220109892377341!GO:0032200;telomere organization and biogenesis;0.0220290653880612!GO:0000723;telomere maintenance;0.0220290653880612!GO:0007021;tubulin folding;0.0220989543084489!GO:0005669;transcription factor TFIID complex;0.0231630864668605!GO:0006220;pyrimidine nucleotide metabolic process;0.0232660843648206!GO:0043492;ATPase activity, coupled to movement of substances;0.0235271610544194!GO:0046128;purine ribonucleoside metabolic process;0.0248407970990407!GO:0042278;purine nucleoside metabolic process;0.0248407970990407!GO:0051101;regulation of DNA binding;0.0251666479573827!GO:0000781;chromosome, telomeric region;0.0251666479573827!GO:0000178;exosome (RNase complex);0.0251666479573827!GO:0007018;microtubule-based movement;0.0252244734970441!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.025241539586216!GO:0015002;heme-copper terminal oxidase activity;0.025241539586216!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.025241539586216!GO:0004129;cytochrome-c oxidase activity;0.025241539586216!GO:0006740;NADPH regeneration;0.0258332058833095!GO:0006098;pentose-phosphate shunt;0.0258332058833095!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0258633422283508!GO:0005773;vacuole;0.0266117470730693!GO:0050662;coenzyme binding;0.0270129013584774!GO:0040011;locomotion;0.02761221384507!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0283092203363789!GO:0043621;protein self-association;0.0286125254529277!GO:0005784;translocon complex;0.0286125254529277!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0289652450718546!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0290585816794232!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0291757814996131!GO:0008276;protein methyltransferase activity;0.0299335728673005!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0302980701755178!GO:0005652;nuclear lamina;0.0307068694481889!GO:0031371;ubiquitin conjugating enzyme complex;0.030762392227919!GO:0035267;NuA4 histone acetyltransferase complex;0.0309606862486054!GO:0008143;poly(A) binding;0.0310610951747986!GO:0033673;negative regulation of kinase activity;0.0319817547555091!GO:0006469;negative regulation of protein kinase activity;0.0319817547555091!GO:0022411;cellular component disassembly;0.0323491173354196!GO:0005663;DNA replication factor C complex;0.032707269818709!GO:0045045;secretory pathway;0.0329084762507411!GO:0016585;chromatin remodeling complex;0.0332318610200432!GO:0040029;regulation of gene expression, epigenetic;0.0337286566620511!GO:0043189;H4/H2A histone acetyltransferase complex;0.0337286566620511!GO:0006355;regulation of transcription, DNA-dependent;0.0340244307326431!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0341231591979114!GO:0030659;cytoplasmic vesicle membrane;0.0345738891749318!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0349887713866317!GO:0033043;regulation of organelle organization and biogenesis;0.0349887713866317!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0351499748160737!GO:0043601;nuclear replisome;0.0353489723274161!GO:0030894;replisome;0.0353489723274161!GO:0005881;cytoplasmic microtubule;0.0354428341279357!GO:0009303;rRNA transcription;0.0354428341279357!GO:0008538;proteasome activator activity;0.0355305514362817!GO:0003702;RNA polymerase II transcription factor activity;0.0357344616183702!GO:0051348;negative regulation of transferase activity;0.0357344616183702!GO:0008536;Ran GTPase binding;0.0357346162781155!GO:0004523;ribonuclease H activity;0.0357996000130065!GO:0006778;porphyrin metabolic process;0.0359033562863308!GO:0033013;tetrapyrrole metabolic process;0.0359033562863308!GO:0000077;DNA damage checkpoint;0.0359951662659221!GO:0007004;telomere maintenance via telomerase;0.0359951662659221!GO:0000123;histone acetyltransferase complex;0.0361942275256593!GO:0030911;TPR domain binding;0.0367165680579755!GO:0006892;post-Golgi vesicle-mediated transport;0.0376036320217312!GO:0040012;regulation of locomotion;0.0376632677370589!GO:0016301;kinase activity;0.0377629940121993!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0381024676794662!GO:0046112;nucleobase biosynthetic process;0.0385443280203852!GO:0030384;phosphoinositide metabolic process;0.0385554206497848!GO:0006650;glycerophospholipid metabolic process;0.039269961571093!GO:0006779;porphyrin biosynthetic process;0.0392704994396601!GO:0033014;tetrapyrrole biosynthetic process;0.0392704994396601!GO:0007265;Ras protein signal transduction;0.0397615737167007!GO:0005680;anaphase-promoting complex;0.0398046649148925!GO:0051098;regulation of binding;0.0398145894927913!GO:0051338;regulation of transferase activity;0.040159418662189!GO:0008154;actin polymerization and/or depolymerization;0.0402014673792032!GO:0007033;vacuole organization and biogenesis;0.0413934853622367!GO:0050178;phenylpyruvate tautomerase activity;0.0417586937948929!GO:0032906;transforming growth factor-beta2 production;0.0420554971348888!GO:0032909;regulation of transforming growth factor-beta2 production;0.0420554971348888!GO:0000084;S phase of mitotic cell cycle;0.0420602165386864!GO:0030125;clathrin vesicle coat;0.0421497489663648!GO:0030665;clathrin coated vesicle membrane;0.0421497489663648!GO:0017134;fibroblast growth factor binding;0.0421710427861955!GO:0042026;protein refolding;0.0421710427861955!GO:0005938;cell cortex;0.0429935380906378!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0430852657143541!GO:0000086;G2/M transition of mitotic cell cycle;0.043448651956044!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0440273226541307!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0440423365287083!GO:0031625;ubiquitin protein ligase binding;0.044096708097669!GO:0007034;vacuolar transport;0.0442305387628051!GO:0006367;transcription initiation from RNA polymerase II promoter;0.044266259738377!GO:0006672;ceramide metabolic process;0.044266259738377!GO:0019783;small conjugating protein-specific protease activity;0.0449140084883033!GO:0008287;protein serine/threonine phosphatase complex;0.0450281830400659!GO:0030508;thiol-disulfide exchange intermediate activity;0.0450492882869276!GO:0004448;isocitrate dehydrogenase activity;0.0450808219630236!GO:0019752;carboxylic acid metabolic process;0.0451775662244457!GO:0003756;protein disulfide isomerase activity;0.0454920080311456!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0454920080311456!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.045784672156181!GO:0006082;organic acid metabolic process;0.0463421182986277!GO:0022415;viral reproductive process;0.0466610021851596!GO:0008097;5S rRNA binding;0.0466727547028456!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0469393284054327!GO:0046822;regulation of nucleocytoplasmic transport;0.0481295163452465!GO:0001952;regulation of cell-matrix adhesion;0.0491322680677125!GO:0031575;G1/S transition checkpoint;0.0494954711323559!GO:0000097;sulfur amino acid biosynthetic process;0.0494954711323559 | |||
|sample_id=11316 | |sample_id=11316 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=cerebral cortex | |sample_tissue=cerebral cortex | ||
|top_motifs=GFI1:2.29787809949;OCT4_SOX2{dimer}:2.2923294536;TFDP1:2.07086928786;ZIC1..3:1.93782076417;NKX6-1,2:1.76988719574;SOX{8,9,10}:1.71736708113;SOX2:1.6347433474;NFY{A,B,C}:1.58254879865;E2F1..5:1.57105051273;PBX1:1.55148129711;NKX2-3_NKX2-5:1.4431777905;POU5F1:1.39351491426;MZF1:1.36913434015;PAX6:1.35076107548;PAX1,9:1.29520127881;SOX17:1.23126802532;ZNF384:1.20262754332;CDX1,2,4:1.14944257405;XCPE1{core}:1.14615383272;POU1F1:1.14103117061;GCM1,2:1.13693968363;FOXP1:1.12413329002;GTF2A1,2:1.06073171339;PITX1..3:1.04700853717;NKX2-1,4:1.01878531355;POU3F1..4:0.998653419383;ONECUT1,2:0.993474148364;CDC5L:0.989928087803;RBPJ:0.971893361052;MTE{core}:0.952343367976;LHX3,4:0.911547524175;EVI1:0.900497658897;GFI1B:0.894912369417;VSX1,2:0.886778068415;AIRE:0.879078750487;GATA4:0.860689860556;UFEwm:0.837841064895;ZNF143:0.82139835445;NRF1:0.820364944502;HOXA9_MEIS1:0.81633198365;TOPORS:0.806996490612;PAX5:0.802622813037;SP1:0.781737272765;TFAP2B:0.772140618596;HOX{A4,D4}:0.771640763603;ALX1:0.769699548595;MYB:0.766329517363;NR6A1:0.747868386326;T:0.744334240814;LEF1_TCF7_TCF7L1,2:0.744062354195;HIC1:0.714218618683;BREu{core}:0.691366013491;ZFP161:0.684864631991;NR3C1:0.681887651465;KLF4:0.673468789078;MAZ:0.659635855681;NANOG:0.654834202878;STAT1,3:0.636639575427;CUX2:0.628106844583;NKX2-2,8:0.621293628081;EGR1..3:0.608240748338;POU2F1..3:0.596017964591;PRRX1,2:0.580039573393;GTF2I:0.569776945454;LMO2:0.521075313848;ELK1,4_GABP{A,B1}:0.511338907626;IKZF2:0.475851599161;ZBTB6:0.448495554335;JUN:0.434700019762;RREB1:0.361791301283;TFAP2{A,C}:0.360625688403;NKX3-2:0.360257368974;YY1:0.355105849993;TLX1..3_NFIC{dimer}:0.350996523101;TEAD1:0.349034767939;FOXD3:0.33745524063;PAX4:0.323722293246;RXR{A,B,G}:0.319149153857;PATZ1:0.301913614171;EN1,2:0.291525163439;HBP1_HMGB_SSRP1_UBTF:0.284193653217;HSF1,2:0.244786334754;ALX4:0.241977920568;PRDM1:0.229848774348;TEF:0.229576145109;STAT5{A,B}:0.173121106654;NR1H4:0.153466679962;RFX1:0.142896880737;NFE2L2:0.139750153976;MED-1{core}:0.13066201668;MYOD1:0.0879109961919;EBF1:0.0818614617653;NFE2L1:0.0782754852801;HMGA1,2:0.0652279453104;GZF1:0.0593924130038;ZBTB16:0.0542786299672;HMX1:0.0526985471877;CRX:0.00215404705471;NFIX:-0.0345655297878;FOXP3:-0.0392865583702;FOXM1:-0.0686440371467;FOS_FOS{B,L1}_JUN{B,D}:-0.0709933121216;MYFfamily:-0.0775825680162;TBX4,5:-0.0833081636673;NANOG{mouse}:-0.0982834076044;PAX8:-0.101773140081;BACH2:-0.115944605592;TFAP4:-0.122389845838;IKZF1:-0.128689560502;HNF4A_NR2F1,2:-0.132775544617;HNF1A:-0.147431937014;NHLH1,2:-0.154851434369;STAT2,4,6:-0.163429531525;SMAD1..7,9:-0.167453210129;TP53:-0.168659647102;MYBL2:-0.171184695525;HOX{A5,B5}:-0.171196378187;SRF:-0.172646993078;DMAP1_NCOR{1,2}_SMARC:-0.175367502092;TGIF1:-0.221155318061;ATF4:-0.224031419256;DBP:-0.26533335795;CREB1:-0.267519102029;SOX5:-0.272157939476;NKX3-1:-0.278325084749;SPZ1:-0.285101826579;ARID5B:-0.295590079383;TBP:-0.305080733016;FOXL1:-0.322306532;REST:-0.333140110263;NFE2:-0.338854790303;FOXN1:-0.357734591596;MEF2{A,B,C,D}:-0.374144714094;PAX3,7:-0.376643354329;PDX1:-0.382678547177;RUNX1..3:-0.388995893325;FOSL2:-0.389560499219;AR:-0.401705400428;RFX2..5_RFXANK_RFXAP:-0.406186137317;ZNF148:-0.412958937185;EP300:-0.417046550856;TFCP2:-0.423833202024;MTF1:-0.428832338476;POU6F1:-0.497795368876;NFATC1..3:-0.498981832754;SPIB:-0.506135747112;NFKB1_REL_RELA:-0.521006592843;IRF1,2:-0.541783343833;BPTF:-0.561225501597;ATF2:-0.568908953393;ZNF423:-0.569776651838;XBP1:-0.608165091425;HAND1,2:-0.617086395294;SNAI1..3:-0.619708151123;ADNP_IRX_SIX_ZHX:-0.625580521069;NFIL3:-0.644003172835;SPI1:-0.659709922092;HOX{A6,A7,B6,B7}:-0.692621973463;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.701404134118;ESRRA:-0.707021413713;ELF1,2,4:-0.721611138904;GATA6:-0.747221728193;ATF5_CREB3:-0.752302378904;ZEB1:-0.757299666777;IRF7:-0.823015431822;FOXO1,3,4:-0.845858937619;AHR_ARNT_ARNT2:-0.855599587449;ESR1:-0.871443778399;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.872825576468;MAFB:-0.893359671682;PPARG:-0.903392763411;CEBPA,B_DDIT3:-0.911360548443;FOXA2:-0.924157662634;RORA:-0.931851502093;ETS1,2:-0.939012276021;NR5A1,2:-0.939571736886;HLF:-0.947003665086;FOXQ1:-0.968108977992;FOX{F1,F2,J1}:-1.00532409858;GLI1..3:-1.02917689144;PAX2:-1.03327455625;SREBF1,2:-1.08592551924;RXRA_VDR{dimer}:-1.15077668342;FOX{D1,D2}:-1.1766138582;HES1:-1.20223498683;bHLH_family:-1.2921510116;TAL1_TCF{3,4,12}:-1.29818035812;HIF1A:-1.30285001045;ZNF238:-1.42965822822;ATF6:-1.48188467416;FOX{I1,J2}:-1.48315626766;TLX2:-1.53891244336 | |top_motifs=GFI1:2.29787809949;OCT4_SOX2{dimer}:2.2923294536;TFDP1:2.07086928786;ZIC1..3:1.93782076417;NKX6-1,2:1.76988719574;SOX{8,9,10}:1.71736708113;SOX2:1.6347433474;NFY{A,B,C}:1.58254879865;E2F1..5:1.57105051273;PBX1:1.55148129711;NKX2-3_NKX2-5:1.4431777905;POU5F1:1.39351491426;MZF1:1.36913434015;PAX6:1.35076107548;PAX1,9:1.29520127881;SOX17:1.23126802532;ZNF384:1.20262754332;CDX1,2,4:1.14944257405;XCPE1{core}:1.14615383272;POU1F1:1.14103117061;GCM1,2:1.13693968363;FOXP1:1.12413329002;GTF2A1,2:1.06073171339;PITX1..3:1.04700853717;NKX2-1,4:1.01878531355;POU3F1..4:0.998653419383;ONECUT1,2:0.993474148364;CDC5L:0.989928087803;RBPJ:0.971893361052;MTE{core}:0.952343367976;LHX3,4:0.911547524175;EVI1:0.900497658897;GFI1B:0.894912369417;VSX1,2:0.886778068415;AIRE:0.879078750487;GATA4:0.860689860556;UFEwm:0.837841064895;ZNF143:0.82139835445;NRF1:0.820364944502;HOXA9_MEIS1:0.81633198365;TOPORS:0.806996490612;PAX5:0.802622813037;SP1:0.781737272765;TFAP2B:0.772140618596;HOX{A4,D4}:0.771640763603;ALX1:0.769699548595;MYB:0.766329517363;NR6A1:0.747868386326;T:0.744334240814;LEF1_TCF7_TCF7L1,2:0.744062354195;HIC1:0.714218618683;BREu{core}:0.691366013491;ZFP161:0.684864631991;NR3C1:0.681887651465;KLF4:0.673468789078;MAZ:0.659635855681;NANOG:0.654834202878;STAT1,3:0.636639575427;CUX2:0.628106844583;NKX2-2,8:0.621293628081;EGR1..3:0.608240748338;POU2F1..3:0.596017964591;PRRX1,2:0.580039573393;GTF2I:0.569776945454;LMO2:0.521075313848;ELK1,4_GABP{A,B1}:0.511338907626;IKZF2:0.475851599161;ZBTB6:0.448495554335;JUN:0.434700019762;RREB1:0.361791301283;TFAP2{A,C}:0.360625688403;NKX3-2:0.360257368974;YY1:0.355105849993;TLX1..3_NFIC{dimer}:0.350996523101;TEAD1:0.349034767939;FOXD3:0.33745524063;PAX4:0.323722293246;RXR{A,B,G}:0.319149153857;PATZ1:0.301913614171;EN1,2:0.291525163439;HBP1_HMGB_SSRP1_UBTF:0.284193653217;HSF1,2:0.244786334754;ALX4:0.241977920568;PRDM1:0.229848774348;TEF:0.229576145109;STAT5{A,B}:0.173121106654;NR1H4:0.153466679962;RFX1:0.142896880737;NFE2L2:0.139750153976;MED-1{core}:0.13066201668;MYOD1:0.0879109961919;EBF1:0.0818614617653;NFE2L1:0.0782754852801;HMGA1,2:0.0652279453104;GZF1:0.0593924130038;ZBTB16:0.0542786299672;HMX1:0.0526985471877;CRX:0.00215404705471;NFIX:-0.0345655297878;FOXP3:-0.0392865583702;FOXM1:-0.0686440371467;FOS_FOS{B,L1}_JUN{B,D}:-0.0709933121216;MYFfamily:-0.0775825680162;TBX4,5:-0.0833081636673;NANOG{mouse}:-0.0982834076044;PAX8:-0.101773140081;BACH2:-0.115944605592;TFAP4:-0.122389845838;IKZF1:-0.128689560502;HNF4A_NR2F1,2:-0.132775544617;HNF1A:-0.147431937014;NHLH1,2:-0.154851434369;STAT2,4,6:-0.163429531525;SMAD1..7,9:-0.167453210129;TP53:-0.168659647102;MYBL2:-0.171184695525;HOX{A5,B5}:-0.171196378187;SRF:-0.172646993078;DMAP1_NCOR{1,2}_SMARC:-0.175367502092;TGIF1:-0.221155318061;ATF4:-0.224031419256;DBP:-0.26533335795;CREB1:-0.267519102029;SOX5:-0.272157939476;NKX3-1:-0.278325084749;SPZ1:-0.285101826579;ARID5B:-0.295590079383;TBP:-0.305080733016;FOXL1:-0.322306532;REST:-0.333140110263;NFE2:-0.338854790303;FOXN1:-0.357734591596;MEF2{A,B,C,D}:-0.374144714094;PAX3,7:-0.376643354329;PDX1:-0.382678547177;RUNX1..3:-0.388995893325;FOSL2:-0.389560499219;AR:-0.401705400428;RFX2..5_RFXANK_RFXAP:-0.406186137317;ZNF148:-0.412958937185;EP300:-0.417046550856;TFCP2:-0.423833202024;MTF1:-0.428832338476;POU6F1:-0.497795368876;NFATC1..3:-0.498981832754;SPIB:-0.506135747112;NFKB1_REL_RELA:-0.521006592843;IRF1,2:-0.541783343833;BPTF:-0.561225501597;ATF2:-0.568908953393;ZNF423:-0.569776651838;XBP1:-0.608165091425;HAND1,2:-0.617086395294;SNAI1..3:-0.619708151123;ADNP_IRX_SIX_ZHX:-0.625580521069;NFIL3:-0.644003172835;SPI1:-0.659709922092;HOX{A6,A7,B6,B7}:-0.692621973463;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.701404134118;ESRRA:-0.707021413713;ELF1,2,4:-0.721611138904;GATA6:-0.747221728193;ATF5_CREB3:-0.752302378904;ZEB1:-0.757299666777;IRF7:-0.823015431822;FOXO1,3,4:-0.845858937619;AHR_ARNT_ARNT2:-0.855599587449;ESR1:-0.871443778399;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.872825576468;MAFB:-0.893359671682;PPARG:-0.903392763411;CEBPA,B_DDIT3:-0.911360548443;FOXA2:-0.924157662634;RORA:-0.931851502093;ETS1,2:-0.939012276021;NR5A1,2:-0.939571736886;HLF:-0.947003665086;FOXQ1:-0.968108977992;FOX{F1,F2,J1}:-1.00532409858;GLI1..3:-1.02917689144;PAX2:-1.03327455625;SREBF1,2:-1.08592551924;RXRA_VDR{dimer}:-1.15077668342;FOX{D1,D2}:-1.1766138582;HES1:-1.20223498683;bHLH_family:-1.2921510116;TAL1_TCF{3,4,12}:-1.29818035812;HIF1A:-1.30285001045;ZNF238:-1.42965822822;ATF6:-1.48188467416;FOX{I1,J2}:-1.48315626766;TLX2:-1.53891244336 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11316-117D2;search_select_hide=table117:FF:11316-117D2 | |||
}} | }} | ||
Latest revision as of 16:32, 3 June 2020
| Name: | Astrocyte - cerebral cortex, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11960 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11960
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11960
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0953 |
| 10 | 10 | 0.15 |
| 100 | 100 | 0.938 |
| 101 | 101 | 0.726 |
| 102 | 102 | 0.763 |
| 103 | 103 | 0.106 |
| 104 | 104 | 0.501 |
| 105 | 105 | 0.504 |
| 106 | 106 | 0.0327 |
| 107 | 107 | 0.756 |
| 108 | 108 | 0.479 |
| 109 | 109 | 0.0212 |
| 11 | 11 | 0.0774 |
| 110 | 110 | 0.278 |
| 111 | 111 | 0.0569 |
| 112 | 112 | 0.0178 |
| 113 | 113 | 0.209 |
| 114 | 114 | 0.00601 |
| 115 | 115 | 0.504 |
| 116 | 116 | 0.928 |
| 117 | 117 | 0.207 |
| 118 | 118 | 0.336 |
| 119 | 119 | 0.213 |
| 12 | 12 | 0.536 |
| 120 | 120 | 0.863 |
| 121 | 121 | 0.804 |
| 122 | 122 | 0.25 |
| 123 | 123 | 0.543 |
| 124 | 124 | 0.283 |
| 125 | 125 | 0.89 |
| 126 | 126 | 0.14 |
| 127 | 127 | 0.112 |
| 128 | 128 | 0.308 |
| 129 | 129 | 0.124 |
| 13 | 13 | 0.321 |
| 130 | 130 | 0.154 |
| 131 | 131 | 0.8 |
| 132 | 132 | 0.842 |
| 133 | 133 | 0.701 |
| 134 | 134 | 0.868 |
| 135 | 135 | 0.0192 |
| 136 | 136 | 0.847 |
| 137 | 137 | 0.155 |
| 138 | 138 | 0.0614 |
| 139 | 139 | 0.00269 |
| 14 | 14 | 0.757 |
| 140 | 140 | 0.313 |
| 141 | 141 | 0.209 |
| 142 | 142 | 0.811 |
| 143 | 143 | 0.00401 |
| 144 | 144 | 0.906 |
| 145 | 145 | 0.699 |
| 146 | 146 | 0.609 |
| 147 | 147 | 0.872 |
| 148 | 148 | 0.0987 |
| 149 | 149 | 0.0953 |
| 15 | 15 | 0.101 |
| 150 | 150 | 0.532 |
| 151 | 151 | 0.262 |
| 152 | 152 | 0.0865 |
| 153 | 153 | 0.304 |
| 154 | 154 | 0.736 |
| 155 | 155 | 0.178 |
| 156 | 156 | 0.523 |
| 157 | 157 | 0.154 |
| 158 | 158 | 0.086 |
| 159 | 159 | 0.608 |
| 16 | 16 | 0.266 |
| 160 | 160 | 0.251 |
| 161 | 161 | 0.811 |
| 162 | 162 | 0.585 |
| 163 | 163 | 0.514 |
| 164 | 164 | 0.0652 |
| 165 | 165 | 0.369 |
| 166 | 166 | 0.407 |
| 167 | 167 | 0.854 |
| 168 | 168 | 0.473 |
| 169 | 169 | 0.00796 |
| 17 | 17 | 0.0921 |
| 18 | 18 | 0.0939 |
| 19 | 19 | 0.368 |
| 2 | 2 | 0.424 |
| 20 | 20 | 0.829 |
| 21 | 21 | 0.797 |
| 22 | 22 | 0.202 |
| 23 | 23 | 0.0542 |
| 24 | 24 | 0.527 |
| 25 | 25 | 0.451 |
| 26 | 26 | 0.531 |
| 27 | 27 | 0.152 |
| 28 | 28 | 0.868 |
| 29 | 29 | 0.253 |
| 3 | 3 | 0.0994 |
| 30 | 30 | 0.793 |
| 31 | 31 | 0.638 |
| 32 | 32 | 0.0837 |
| 33 | 33 | 0.533 |
| 34 | 34 | 0.553 |
| 35 | 35 | 0.313 |
| 36 | 36 | 0.0904 |
| 37 | 37 | 0.0438 |
| 38 | 38 | 0.186 |
| 39 | 39 | 0.851 |
| 4 | 4 | 0.605 |
| 40 | 40 | 0.165 |
| 41 | 41 | 0.186 |
| 42 | 42 | 0.279 |
| 43 | 43 | 0.102 |
| 44 | 44 | 0.471 |
| 45 | 45 | 0.406 |
| 46 | 46 | 0.1 |
| 47 | 47 | 0.215 |
| 48 | 48 | 0.26 |
| 49 | 49 | 0.0964 |
| 5 | 5 | 0.108 |
| 50 | 50 | 0.654 |
| 51 | 51 | 0.26 |
| 52 | 52 | 0.505 |
| 53 | 53 | 0.48 |
| 54 | 54 | 0.237 |
| 55 | 55 | 0.211 |
| 56 | 56 | 0.507 |
| 57 | 57 | 0.534 |
| 58 | 58 | 0.101 |
| 59 | 59 | 0.0866 |
| 6 | 6 | 0.944 |
| 60 | 60 | 0.0761 |
| 61 | 61 | 0.215 |
| 62 | 62 | 0.0642 |
| 63 | 63 | 0.216 |
| 64 | 64 | 0.433 |
| 65 | 65 | 0.0598 |
| 66 | 66 | 0.522 |
| 67 | 67 | 0.721 |
| 68 | 68 | 0.229 |
| 69 | 69 | 0.996 |
| 7 | 7 | 0.34 |
| 70 | 70 | 0.0147 |
| 71 | 71 | 0.0705 |
| 72 | 72 | 0.186 |
| 73 | 73 | 0.0622 |
| 74 | 74 | 0.679 |
| 75 | 75 | 0.0486 |
| 76 | 76 | 0.419 |
| 77 | 77 | 0.152 |
| 78 | 78 | 0.33 |
| 79 | 79 | 0.249 |
| 8 | 8 | 0.268 |
| 80 | 80 | 0.187 |
| 81 | 81 | 0.464 |
| 82 | 82 | 0.0181 |
| 83 | 83 | 0.934 |
| 84 | 84 | 0.437 |
| 85 | 85 | 0.0201 |
| 86 | 86 | 0.218 |
| 87 | 87 | 0.924 |
| 88 | 88 | 0.858 |
| 89 | 89 | 0.142 |
| 9 | 9 | 0.21 |
| 90 | 90 | 0.305 |
| 91 | 91 | 0.879 |
| 92 | 92 | 0.0254 |
| 93 | 93 | 0.014 |
| 94 | 94 | 0.0519 |
| 95 | 95 | 0.0637 |
| 96 | 96 | 0.172 |
| 97 | 97 | 0.519 |
| 98 | 98 | 0.243 |
| 99 | 99 | 0.708 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11960
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000194 human astrocyte of the cerebral cortex sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000095 (neuron associated cell)
0000243 (glial cell (sensu Vertebrata))
0000128 (oligodendrocyte)
0000126 (macroglial cell)
0000125 (glial cell)
0000255 (eukaryotic cell)
0000127 (astrocyte)
0002605 (astrocyte of the cerebral cortex)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0000956 (cerebral cortex)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000194 (human astrocyte of the cerebral cortex sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000339 (glioblast (sensu Vertebrata))
CL:0000221 (ectodermal cell)
