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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005386
|DRA_sample_Accession=CAGE@SAMD00005386
|accession_numbers=CAGE;DRX008224;DRR009096;DRZ000521;DRZ001906
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005386
|accession_numbers=CAGE;DRX008224;DRR009096;DRZ000521;DRZ001906;DRZ011871;DRZ013256
|accession_numbers_RNASeq=sRNA-Seq;DRX037043;DRR041409;DRZ007051
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000055,UBERON:0004111,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002049,UBERON:0007798,UBERON:0001473,UBERON:0002465,UBERON:0004535,UBERON:0004536,UBERON:0006558,UBERON:0002193,UBERON:0002405,UBERON:0001009
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000055,UBERON:0004111,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002049,UBERON:0007798,UBERON:0001473,UBERON:0002465,UBERON:0004535,UBERON:0004536,UBERON:0006558,UBERON:0002193,UBERON:0002405,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0002138
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0002138
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|def=
|def=
|expression_enrichment_score=chr21:39870339..39870443,-!p1@ERG!2.25!178.24!ERG;;chr18:53068911..53068935,-!p4@TCF4!2.15!157.25!TCF4;;chr20:62680984..62680999,-!p1@SOX18!1.87!94.99!SOX18;;chr7:115670804..115670825,-!p1@TFEC!1.77!57.99!TFEC;;chr17:6926362..6926377,+!p1@BCL6B!1.74!54.43!BCL6B;;chr5:71803177..71803255,-!p1@ZNF366!1.74!54.08!ZNF366;;chr9:124991204..124991246,-!p1@LHX6!1.74!53.72!LHX6;;chr19:46801639..46801699,+!p1@HIF3A!1.60!38.78!HIF3A;;chr8:10588010..10588030,-!p1@SOX7!1.60!38.78!SOX7;;chr1:158985493..158985535,+!p4@IFI16!1.48!43.40!IFI16;;chr22:19748231..19748317,+!p1@TBX1!1.48!29.17!TBX1;;chr7:15726296..15726315,-!p1@MEOX2!1.44!26.33!MEOX2;;chr3:169381420..169381535,-!p1@MECOM!1.42!29.88!MECOM;;chr18:22932080..22932170,-!p1@ZNF521!1.38!94.63!ZNF521;;chr12:96588368..96588394,+!p3@ELK3!1.38!60.84!ELK3;;chr17:46682321..46682362,-!p1@HOXB6!1.37!22.41!HOXB6;;chr7:15726243..15726293,-!p2@MEOX2!1.35!21.35!MEOX2;;chr17:46688334..46688385,-!p1@HOXB7!1.34!29.88!HOXB7;;chr3:114343039..114343085,-!p8@ZBTB20!1.28!18.14!ZBTB20;;chr13:72441315..72441454,-!p1@DACH1!1.27!35.22!DACH1;;chr18:53068982..53068993,-!p20@TCF4!1.27!17.79!TCF4;;chr9:14314131..14314147,-!p2@NFIB!1.19!79.34!NFIB;;chr8:55370487..55370503,+!p1@SOX17!1.19!14.59!SOX17;;chr10:94449703..94449718,+!p1@HHEX!1.17!53.01!HHEX;;chr18:53068893..53068902,-!p28@TCF4!1.13!12.45!TCF4;;chr18:53177984..53178004,-!p17@TCF4!1.13!12.45!TCF4;;chrY:21906594..21906622,-!p1@KDM5D!1.12!12.10!KDM5D;;chr9:16705069..16705086,-!p3@BNC2!1.11!11.74!BNC2;;chr1:200008734..200008765,+!p2@NR5A2!1.11!11.74!NR5A2;;chr19:13213511..13213545,-!p2@LYL1!1.09!12.45!LYL1;;chr2:46524537..46524553,+!p1@EPAS1!1.05!1016.07!EPAS1;;chr1:158979686..158979745,+!p1@IFI16!1.03!324.81!IFI16;;chr10:131762504..131762555,-!p1@EBF3!1.03!9.61!EBF3;;chr3:21792682..21792720,-!p1@ZNF385D!1.03!9.61!ZNF385D;;chr4:146403912..146403972,+!p5@SMAD1!1.00!11.74!SMAD1;;chr4:146404119..146404158,+!p9@SMAD1!1.00!8.89!SMAD1;;chr3:178789522..178789564,-!p2@ZMAT3!0.99!65.82!ZMAT3;;chr19:53496768..53496799,-!p1@ZNF702P!0.99!13.87!ZNF702P;;chr18:22932004..22932021,-!p2@ZNF521!0.98!8.54!ZNF521;;chr7:115670792..115670797,-!p2@TFEC!0.98!8.54!TFEC;;chr6:34204921..34204939,+!p3@HMGA1!0.96!252.59!HMGA1;;chr1:244214577..244214593,+!p1@ZNF238!0.96!8.18!ZNF238;;chr2:177053386..177053402,+!p1@HOXD1!0.96!8.18!HOXD1;;chrY:2803415..2803468,+!p1@ZFY!0.96!8.18!ZFY;;chr2:46524897..46524911,+!p2@EPAS1!0.95!22.77!EPAS1;;chr16:86544113..86544145,+!p1@FOXF1!0.95!9.96!FOXF1;;chr18:53068940..53068951,-!p21@TCF4!0.95!7.83!TCF4;;chr2:177001290..177001315,+!p1@HOXD3!0.95!7.83!HOXD3;;chr15:96876966..96877017,+!p12@NR2F2!0.94!11.38!NR2F2;;chr7:27196267..27196311,-!p1@HOXA7!0.93!7.47!HOXA7;;chr13:72441074..72441172,-!p2@DACH1!0.93!7.47!DACH1;;chr20:50721803..50721857,-!p2@ZFP64!0.92!11.74!ZFP64;;chr9:14314566..14314618,-!p1@NFIB!0.91!88.59!NFIB;;chr4:146402843..146402864,+!p3@SMAD1!0.91!14.59!SMAD1;;chr5:124082580..124082603,-!p4@ZNF608!0.91!8.18!ZNF608;;chr6:28321971..28321995,-!p1@ZNF323!0.91!7.12!ZNF323;;chr13:72441506..72441562,-!p3@DACH1!0.91!7.12!DACH1;;chr20:50159198..50159299,-!p1@NFATC2!0.90!10.32!NFATC2;;chr1:214161272..214161322,+!p1@PROX1!0.90!9.96!PROX1;;chr3:128206762..128206781,-!p2@GATA2!0.89!44.47!GATA2;;chr3:168864315..168864339,-!p2@MECOM!0.89!11.38!MECOM;;chr2:176994408..176994492,+!p1@HOXD8!0.89!6.76!HOXD8;;chr12:66218255..66218304,+!p3@HMGA2!0.88!18.50!HMGA2;;chr11:128563652..128563689,+!p3@FLI1!0.87!6.40!FLI1;;chr9:14313893..14313908,-!p7@NFIB!0.85!8.89!NFIB;;chr10:31288398..31288455,-!p2@ZNF438!0.85!7.12!ZNF438;;chr10:31288370..31288393,-!p3@ZNF438!0.85!6.05!ZNF438;;chr17:46690839..46690884,-!p1@HOXB8!0.85!6.05!HOXB8;;chr19:46800289..46800327,+!p2@HIF3A!0.85!6.05!HIF3A;;chr7:26191809..26191890,+!p1@NFE2L3!0.83!30.24!NFE2L3;;chr8:106330656..106330684,+!p1@ZFPM2!0.83!16.01!ZFPM2;;chr3:21792585..21792625,-!p2@ZNF385D!0.83!6.40!ZNF385D;;chr16:69599899..69599919,+!p2@NFAT5!0.82!69.02!NFAT5;;chr18:53257001..53257015,-!p5@TCF4!0.82!9.96!TCF4;;chr5:88178983..88179012,-!p1@MEF2C!0.81!45.18!MEF2C;;chr19:13213399..13213414,-!p6@LYL1!0.80!5.34!LYL1;;chr22:19746969..19746987,+!p2@TBX1!0.80!5.34!TBX1;;chr12:80084137..80084165,-!p10@PAWR!0.79!6.76!PAWR;;chr1:158985469..158985489,+!p7@IFI16!0.78!6.05!IFI16;;chr12:80084018..80084035,-!p17@PAWR!0.78!4.98!PAWR;;chr7:27205106..27205134,-!p2@HOXA9!0.78!4.98!HOXA9;;chr4:146401920..146401926,+!p14@SMAD1!0.78!4.98!SMAD1;;chr17:46655672..46655697,-!p3@HOXB4!0.78!4.98!HOXB4;;chr11:128563948..128564003,+!p1@FLI1!0.77!65.11!FLI1;;chr4:146402997..146403020,+!p1@SMAD1!0.77!37.36!SMAD1;;chr3:114343768..114343822,-!p1@ZBTB20!0.77!23.12!ZBTB20;;chr6:126112074..126112144,+!p1@NCOA7!0.76!70.09!NCOA7;;chr18:52989031..52989079,-!p2@TCF4!0.76!12.10!TCF4;;chr7:113726357..113726443,+!p1@FOXP2!0.76!8.54!FOXP2;;chr15:96869114..96869160,+!p11@NR2F2!0.76!6.76!NR2F2;;chr10:35484804..35484902,+!p2@CREM!0.75!19.57!CREM;;chr3:114343826..114343869,-!p4@ZBTB20!0.75!9.96!ZBTB20;;chr1:205601064..205601087,-!p4@ELK4!0.75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|ffid_belonging_in_development=CL:0000222,CL:0005022
|ffid_belonging_in_development=CL:0000222,CL:0005022
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Line 41: Line 44:
|fonse_treatment_closure=
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|has_quality=
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|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Lymphatic%252c%2520donor2.CNhs11901.11317-117D3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Lymphatic%252c%2520donor2.CNhs11901.11317-117D3.hg38.nobarcode.ctss.bed.gz
|id=FF:11317-117D3
|id=FF:11317-117D3
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|is_a=EFO:0002091;;FF:0000049
Line 46: Line 54:
|library_id=CNhs11901
|library_id=CNhs11901
|library_id_phase_based=2:CNhs11901
|library_id_phase_based=2:CNhs11901
|name="Endothelial Cells - Lymphatic, donor2"
|microRNAs=
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|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11317
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.AGTCAA.11317
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11317
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.AGTCAA.11317
|name=Endothelial Cells - Lymphatic, donor2
|namespace=FANTOM5
|namespace=FANTOM5
|part_of=
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|profile_cagescan=,,,
|profile_hcage="CNhs11901,LSID834,release010,COMPLETED"
|profile_hcage=CNhs11901,LSID834,release010,COMPLETED
|profile_rnaseq=
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|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 67: Line 82:
|rna_tube_id=117D3
|rna_tube_id=117D3
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10004.AGTCAA
|sample_age=fetal
|sample_age=fetal
|sample_category=primary cells
|sample_category=primary cells
Line 72: Line 88:
|sample_cell_line=
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_lot=N/A
|sample_cell_type="endothelial cell, lymphatic"
|sample_cell_type=endothelial cell, lymphatic
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_company=Sciencell/3H
Line 90: Line 106:
|top_motifs=FOX{I1,J2}:1.93744873705;PAX6:1.66442804053;SREBF1,2:1.57459360664;NFATC1..3:1.54313411048;SOX5:1.43174097548;SOX{8,9,10}:1.41230232396;RXR{A,B,G}:1.38946555438;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.34184006581;TEF:1.25379597279;SOX2:1.24828556886;IKZF2:1.19195023897;PAX1,9:1.08405217384;SPZ1:1.06750160641;TLX1..3_NFIC{dimer}:1.06664180906;HBP1_HMGB_SSRP1_UBTF:1.00814118395;POU3F1..4:0.991538347194;ARID5B:0.956571114249;bHLH_family:0.909329225415;ADNP_IRX_SIX_ZHX:0.872897511774;ZFP161:0.822762687176;FOXQ1:0.800504763483;ELF1,2,4:0.798280895116;STAT1,3:0.787763597281;LEF1_TCF7_TCF7L1,2:0.714811397888;ETS1,2:0.696055363655;AR:0.649366678018;TFAP4:0.636718621275;NR3C1:0.619331855853;STAT2,4,6:0.602025277537;HOXA9_MEIS1:0.601674445755;LHX3,4:0.562989191997;TFAP2{A,C}:0.551315988615;TEAD1:0.540365659452;GATA6:0.528109398241;SPIB:0.523075804857;XCPE1{core}:0.522081315234;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.522018104446;RBPJ:0.520429602596;ALX1:0.520407661679;FOX{D1,D2}:0.506976081673;SOX17:0.505340519934;TAL1_TCF{3,4,12}:0.494842012876;FOXD3:0.491150281024;NRF1:0.491081294285;PAX5:0.460346506516;TP53:0.454735228677;EVI1:0.453435301591;GZF1:0.442172894143;SP1:0.432752267388;PDX1:0.414703991348;EN1,2:0.363012579678;EGR1..3:0.334262835468;GFI1B:0.323601283115;TGIF1:0.301314750964;PRDM1:0.30077437801;FOX{F1,F2,J1}:0.296111893259;IKZF1:0.291905625449;TFDP1:0.287896238435;IRF1,2:0.285647999534;FOXN1:0.282070647324;NKX2-3_NKX2-5:0.279890097858;HAND1,2:0.27706262874;HMGA1,2:0.240537411042;GCM1,2:0.233595288768;PAX2:0.216206747211;CDC5L:0.215879849261;ZBTB16:0.215242421539;MED-1{core}:0.185485430175;NANOG:0.165905588841;NFE2:0.151736111945;ZNF143:0.131339575716;SPI1:0.11457475117;DMAP1_NCOR{1,2}_SMARC:0.107973039148;CRX:0.106471200915;HIC1:0.103599931761;FOXP1:0.0910975840871;ZBTB6:0.0768704000109;MAZ:0.0728173282116;MYOD1:0.0717624973138;MTE{core}:0.0637298363842;YY1:0.0595484149187;ONECUT1,2:0.0588687907268;TFAP2B:0.0500677696759;BPTF:0.0498531360962;BACH2:0.0370155061906;ATF2:0.0357394946626;NANOG{mouse}:0.0348978739488;PITX1..3:0.0331975376275;FOSL2:0.0307922306315;HNF4A_NR2F1,2:0.0161043239077;POU1F1:-0.0142560325969;NFIX:-0.0191974665413;NFY{A,B,C}:-0.0230438376767;NR5A1,2:-0.0260277795136;FOXA2:-0.0599544552969;CREB1:-0.0623061903468;SMAD1..7,9:-0.0688297403686;EP300:-0.0751581671031;AIRE:-0.0805890407964;NHLH1,2:-0.0831044718533;FOS_FOS{B,L1}_JUN{B,D}:-0.0837881315877;NFKB1_REL_RELA:-0.0941154706385;TLX2:-0.113405775251;GFI1:-0.123707044474;GTF2I:-0.133234037995;SRF:-0.137528489342;LMO2:-0.138685561187;POU6F1:-0.139085142183;REST:-0.142353486102;CUX2:-0.14483027097;NFE2L2:-0.148940117125;NKX2-2,8:-0.160520594491;HNF1A:-0.160906589075;MEF2{A,B,C,D}:-0.162439121166;PAX3,7:-0.16319269344;MZF1:-0.165711011045;FOXL1:-0.186970719276;IRF7:-0.204053065578;PBX1:-0.20596383934;GATA4:-0.226102862209;MYB:-0.227088311576;UFEwm:-0.230656731766;PATZ1:-0.242495961768;HSF1,2:-0.247168703429;ZIC1..3:-0.261938876275;PRRX1,2:-0.263772998726;FOXO1,3,4:-0.264519723203;GTF2A1,2:-0.27046623034;CDX1,2,4:-0.279944721894;MYFfamily:-0.293096870878;PAX8:-0.295659988457;RFX1:-0.307027416763;HIF1A:-0.309253702522;AHR_ARNT_ARNT2:-0.338826094409;NR1H4:-0.340481477707;NKX6-1,2:-0.36655697235;STAT5{A,B}:-0.399031075887;E2F1..5:-0.404412910854;ATF6:-0.426146832351;HLF:-0.426551763295;ELK1,4_GABP{A,B1}:-0.427499323902;RORA:-0.444079779814;PPARG:-0.467025465459;NFE2L1:-0.471997825618;ZNF238:-0.475493973801;ZNF148:-0.515689044768;MTF1:-0.539348532403;ESRRA:-0.547175026887;OCT4_SOX2{dimer}:-0.565536910191;XBP1:-0.579104370626;CEBPA,B_DDIT3:-0.580716065423;HMX1:-0.582532213774;ATF4:-0.591051575591;MYBL2:-0.592586548021;RREB1:-0.597207769397;JUN:-0.600090183009;TOPORS:-0.601941183499;HOX{A5,B5}:-0.614971419112;NKX2-1,4:-0.618636289804;HES1:-0.621540339953;TBP:-0.631403502823;GLI1..3:-0.643247025878;RUNX1..3:-0.64698808969;TFCP2:-0.654262127332;SNAI1..3:-0.67419792344;ALX4:-0.69599452105;EBF1:-0.720804723022;PAX4:-0.729343108071;FOXP3:-0.72981091294;ATF5_CREB3:-0.739288011905;NKX3-2:-0.793040307533;ZNF423:-0.804213337931;VSX1,2:-0.807277835438;ESR1:-0.81414705334;NKX3-1:-0.824071276708;POU5F1:-0.833528366695;MAFB:-0.836362170084;BREu{core}:-0.852302682113;T:-0.85376832776;HOX{A4,D4}:-0.865965621893;KLF4:-0.888845697393;ZEB1:-0.889280198739;FOXM1:-0.9259636315;ZNF384:-0.931418863196;TBX4,5:-0.937105537063;NR6A1:-0.954052551081;NFIL3:-1.00306747642;RFX2..5_RFXANK_RFXAP:-1.05999752659;DBP:-1.12183365326;HOX{A6,A7,B6,B7}:-1.17732599926;RXRA_VDR{dimer}:-1.18226987381;POU2F1..3:-1.46704328031
|top_motifs=FOX{I1,J2}:1.93744873705;PAX6:1.66442804053;SREBF1,2:1.57459360664;NFATC1..3:1.54313411048;SOX5:1.43174097548;SOX{8,9,10}:1.41230232396;RXR{A,B,G}:1.38946555438;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.34184006581;TEF:1.25379597279;SOX2:1.24828556886;IKZF2:1.19195023897;PAX1,9:1.08405217384;SPZ1:1.06750160641;TLX1..3_NFIC{dimer}:1.06664180906;HBP1_HMGB_SSRP1_UBTF:1.00814118395;POU3F1..4:0.991538347194;ARID5B:0.956571114249;bHLH_family:0.909329225415;ADNP_IRX_SIX_ZHX:0.872897511774;ZFP161:0.822762687176;FOXQ1:0.800504763483;ELF1,2,4:0.798280895116;STAT1,3:0.787763597281;LEF1_TCF7_TCF7L1,2:0.714811397888;ETS1,2:0.696055363655;AR:0.649366678018;TFAP4:0.636718621275;NR3C1:0.619331855853;STAT2,4,6:0.602025277537;HOXA9_MEIS1:0.601674445755;LHX3,4:0.562989191997;TFAP2{A,C}:0.551315988615;TEAD1:0.540365659452;GATA6:0.528109398241;SPIB:0.523075804857;XCPE1{core}:0.522081315234;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.522018104446;RBPJ:0.520429602596;ALX1:0.520407661679;FOX{D1,D2}:0.506976081673;SOX17:0.505340519934;TAL1_TCF{3,4,12}:0.494842012876;FOXD3:0.491150281024;NRF1:0.491081294285;PAX5:0.460346506516;TP53:0.454735228677;EVI1:0.453435301591;GZF1:0.442172894143;SP1:0.432752267388;PDX1:0.414703991348;EN1,2:0.363012579678;EGR1..3:0.334262835468;GFI1B:0.323601283115;TGIF1:0.301314750964;PRDM1:0.30077437801;FOX{F1,F2,J1}:0.296111893259;IKZF1:0.291905625449;TFDP1:0.287896238435;IRF1,2:0.285647999534;FOXN1:0.282070647324;NKX2-3_NKX2-5:0.279890097858;HAND1,2:0.27706262874;HMGA1,2:0.240537411042;GCM1,2:0.233595288768;PAX2:0.216206747211;CDC5L:0.215879849261;ZBTB16:0.215242421539;MED-1{core}:0.185485430175;NANOG:0.165905588841;NFE2:0.151736111945;ZNF143:0.131339575716;SPI1:0.11457475117;DMAP1_NCOR{1,2}_SMARC:0.107973039148;CRX:0.106471200915;HIC1:0.103599931761;FOXP1:0.0910975840871;ZBTB6:0.0768704000109;MAZ:0.0728173282116;MYOD1:0.0717624973138;MTE{core}:0.0637298363842;YY1:0.0595484149187;ONECUT1,2:0.0588687907268;TFAP2B:0.0500677696759;BPTF:0.0498531360962;BACH2:0.0370155061906;ATF2:0.0357394946626;NANOG{mouse}:0.0348978739488;PITX1..3:0.0331975376275;FOSL2:0.0307922306315;HNF4A_NR2F1,2:0.0161043239077;POU1F1:-0.0142560325969;NFIX:-0.0191974665413;NFY{A,B,C}:-0.0230438376767;NR5A1,2:-0.0260277795136;FOXA2:-0.0599544552969;CREB1:-0.0623061903468;SMAD1..7,9:-0.0688297403686;EP300:-0.0751581671031;AIRE:-0.0805890407964;NHLH1,2:-0.0831044718533;FOS_FOS{B,L1}_JUN{B,D}:-0.0837881315877;NFKB1_REL_RELA:-0.0941154706385;TLX2:-0.113405775251;GFI1:-0.123707044474;GTF2I:-0.133234037995;SRF:-0.137528489342;LMO2:-0.138685561187;POU6F1:-0.139085142183;REST:-0.142353486102;CUX2:-0.14483027097;NFE2L2:-0.148940117125;NKX2-2,8:-0.160520594491;HNF1A:-0.160906589075;MEF2{A,B,C,D}:-0.162439121166;PAX3,7:-0.16319269344;MZF1:-0.165711011045;FOXL1:-0.186970719276;IRF7:-0.204053065578;PBX1:-0.20596383934;GATA4:-0.226102862209;MYB:-0.227088311576;UFEwm:-0.230656731766;PATZ1:-0.242495961768;HSF1,2:-0.247168703429;ZIC1..3:-0.261938876275;PRRX1,2:-0.263772998726;FOXO1,3,4:-0.264519723203;GTF2A1,2:-0.27046623034;CDX1,2,4:-0.279944721894;MYFfamily:-0.293096870878;PAX8:-0.295659988457;RFX1:-0.307027416763;HIF1A:-0.309253702522;AHR_ARNT_ARNT2:-0.338826094409;NR1H4:-0.340481477707;NKX6-1,2:-0.36655697235;STAT5{A,B}:-0.399031075887;E2F1..5:-0.404412910854;ATF6:-0.426146832351;HLF:-0.426551763295;ELK1,4_GABP{A,B1}:-0.427499323902;RORA:-0.444079779814;PPARG:-0.467025465459;NFE2L1:-0.471997825618;ZNF238:-0.475493973801;ZNF148:-0.515689044768;MTF1:-0.539348532403;ESRRA:-0.547175026887;OCT4_SOX2{dimer}:-0.565536910191;XBP1:-0.579104370626;CEBPA,B_DDIT3:-0.580716065423;HMX1:-0.582532213774;ATF4:-0.591051575591;MYBL2:-0.592586548021;RREB1:-0.597207769397;JUN:-0.600090183009;TOPORS:-0.601941183499;HOX{A5,B5}:-0.614971419112;NKX2-1,4:-0.618636289804;HES1:-0.621540339953;TBP:-0.631403502823;GLI1..3:-0.643247025878;RUNX1..3:-0.64698808969;TFCP2:-0.654262127332;SNAI1..3:-0.67419792344;ALX4:-0.69599452105;EBF1:-0.720804723022;PAX4:-0.729343108071;FOXP3:-0.72981091294;ATF5_CREB3:-0.739288011905;NKX3-2:-0.793040307533;ZNF423:-0.804213337931;VSX1,2:-0.807277835438;ESR1:-0.81414705334;NKX3-1:-0.824071276708;POU5F1:-0.833528366695;MAFB:-0.836362170084;BREu{core}:-0.852302682113;T:-0.85376832776;HOX{A4,D4}:-0.865965621893;KLF4:-0.888845697393;ZEB1:-0.889280198739;FOXM1:-0.9259636315;ZNF384:-0.931418863196;TBX4,5:-0.937105537063;NR6A1:-0.954052551081;NFIL3:-1.00306747642;RFX2..5_RFXANK_RFXAP:-1.05999752659;DBP:-1.12183365326;HOX{A6,A7,B6,B7}:-1.17732599926;RXRA_VDR{dimer}:-1.18226987381;POU2F1..3:-1.46704328031
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11317-117D3;search_select_hide=table117:FF:11317-117D3
}}
}}

Latest revision as of 16:33, 3 June 2020

Name:Endothelial Cells - Lymphatic, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11901
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuelymph node
dev stagefetus
sexunknown
agefetal
cell typeendothelial cell, lymphatic
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number2714
catalog numberSC2015
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005386
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11901 CAGE DRX008224 DRR009096
Accession ID Hg19

Library idBAMCTSS
CNhs11901 DRZ000521 DRZ001906
Accession ID Hg38

Library idBAMCTSS
CNhs11901 DRZ011871 DRZ013256
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005386
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10004.AGTCAA sRNA-Seq DRX037043 DRR041409
Accession ID Hg19

Library idBAMCTSS
SRhi10004.AGTCAA DRZ007051


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.106
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0905
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen1.054
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.315
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.035
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.174
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0447
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.119
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.452
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.035
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.213
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.459
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.132
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11901

Jaspar motifP-value
MA0002.20.00749
MA0003.10.203
MA0004.10.121
MA0006.10.483
MA0007.10.85
MA0009.10.123
MA0014.10.969
MA0017.10.109
MA0018.28.3477e-4
MA0019.10.147
MA0024.10.148
MA0025.10.108
MA0027.10.92
MA0028.10.945
MA0029.10.677
MA0030.10.105
MA0031.10.079
MA0035.20.406
MA0038.10.933
MA0039.20.609
MA0040.10.359
MA0041.10.0302
MA0042.10.0676
MA0043.19.95606e-5
MA0046.10.392
MA0047.20.0137
MA0048.10.392
MA0050.10.0183
MA0051.17.23659e-4
MA0052.10.86
MA0055.10.465
MA0057.10.462
MA0058.10.00929
MA0059.10.448
MA0060.10.944
MA0061.10.0285
MA0062.20.824
MA0065.20.00241
MA0066.10.216
MA0067.10.479
MA0068.10.515
MA0069.10.107
MA0070.10.295
MA0071.10.133
MA0072.10.637
MA0073.10.311
MA0074.10.917
MA0076.10.58
MA0077.16.20162e-6
MA0078.10.123
MA0079.20.366
MA0080.27.64063e-4
MA0081.10.109
MA0083.10.344
MA0084.10.0187
MA0087.10.0531
MA0088.10.924
MA0090.10.183
MA0091.10.389
MA0092.10.13
MA0093.10.0774
MA0099.20.0141
MA0100.10.786
MA0101.10.382
MA0102.20.0504
MA0103.10.00534
MA0104.20.281
MA0105.10.00348
MA0106.10.00515
MA0107.10.507
MA0108.20.00349
MA0111.10.78
MA0112.20.00145
MA0113.10.854
MA0114.10.0219
MA0115.10.0336
MA0116.12.06051e-5
MA0117.10.12
MA0119.10.16
MA0122.10.368
MA0124.10.538
MA0125.10.695
MA0131.10.162
MA0135.10.169
MA0136.10.0546
MA0137.20.332
MA0138.20.202
MA0139.10.746
MA0140.10.101
MA0141.10.398
MA0142.10.0935
MA0143.10.422
MA0144.10.414
MA0145.10.891
MA0146.10.0533
MA0147.10.19
MA0148.10.00385
MA0149.10.231
MA0150.10.549
MA0152.10.872
MA0153.10.859
MA0154.10.00438
MA0155.10.944
MA0156.10.00371
MA0157.10.228
MA0159.10.874
MA0160.10.439
MA0162.10.668
MA0163.17.38857e-4
MA0164.10.396
MA0258.10.0622
MA0259.10.573



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11901

Novel motifP-value
10.246
100.12
1000.787
1010.664
1020.556
1030.349
1040.407
1050.248
1060.0166
1070.559
1080.808
1090.171
110.263
1100.66
1110.827
1120.335
1130.4
1140.558
1150.0526
1160.00774
1170.723
1180.628
1190.447
120.485
1200.939
1210.748
1220.848
1230.445
1240.111
1250.953
1260.346
1270.0593
1280.227
1290.633
130.719
1300.595
1310.593
1320.279
1330.565
1340.625
1350.154
1360.293
1370.432
1380.162
1390.607
140.691
1400.0876
1410.719
1420.0152
1430.515
1440.202
1450.536
1460.91
1470.461
1480.218
1490.362
150.42
1500.82
1510.518
1520.371
1530.146
1540.556
1550.159
1560.0798
1570.33
1580.316
1590.157
160.148
1600.774
1610.0378
1620.262
1630.771
1640.813
1650.939
1660.677
1670.289
1680.902
1690.791
170.384
180.0257
190.221
20.349
200.229
210.906
220.499
230.703
240.348
250.213
260.0351
270.473
280.5
290.339
30.475
300.421
310.257
320.027
330.744
340.902
350.321
360.199
370.715
380.848
390.0952
40.0204
400.695
410.437
420.712
430.098
440.074
450.739
460.116
470.25
480.52
490.08
50.885
500.813
510.564
520.296
530.464
540.615
550.911
560.489
570.966
580.0411
590.145
60.294
600.0605
610.761
620.0102
630.278
640.0422
650.292
660.752
670.595
680.939
690.356
70.474
700.0327
710.117
720.546
730.251
740.487
750.707
760.861
770.164
780.571
790.631
80.315
800.434
810.226
820.291
830.512
840.745
850.0723
860.948
870.819
880.179
890.241
90.338
900.269
910.397
920.144
930.193
940.233
950.8
960.799
970.264
980.509
990.881



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11901


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0002138 (endothelial cell of lymphatic vessel)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000055 (vessel)
0004111 (anatomical conduit)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002049 (vasculature)
0007798 (vascular system)
0001473 (lymphatic vessel)
0002465 (lymphoid system)
0004535 (cardiovascular system)
0004536 (lymph vasculature)
0006558 (lymphatic part of lymphoid system)
0002193 (hemolymphoid system)
0002405 (immune system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000001 (sample)
0000049 (human lymphatic endothelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)
CL:0005022 (vascular lymphangioblast)

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