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{{f5samples
 
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000019,UBERON:0000020,UBERON:0000033,UBERON:0000047,UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000119,UBERON:0000153,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000483,UBERON:0000488,UBERON:0000970,UBERON:0001009,UBERON:0001032,UBERON:0001062,UBERON:0001444,UBERON:0001456,UBERON:0001768,UBERON:0001775,UBERON:0001778,UBERON:0001801,UBERON:0002049,UBERON:0002104,UBERON:0002200,UBERON:0002203,UBERON:0004456,UBERON:0004535,UBERON:0006876,UBERON:0007625,UBERON:0007798
+
|DRA_sample_Accession=CAGE@SAMD00005764
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000064,CL:0000066,CL:0000067,CL:0000075,CL:0000133,CL:0000144,CL:0000220,CL:0000221,CL:0000255,CL:0000548,CL:0000710,CL:0002077,CL:0002304,CL:0002321,CL:0002371,CL:0005012
+
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005764
 +
|accession_numbers=CAGE;DRX008207;DRR009079;DRZ000504;DRZ001889;DRZ011854;DRZ013239
 +
|accession_numbers_RNASeq=sRNA-Seq;DRX037213;DRR041579;DRZ007221
 +
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000970,UBERON:0000019,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000020,UBERON:0010371,UBERON:0002203,UBERON:0001768,UBERON:0000488,UBERON:0007625,UBERON:0001032,UBERON:0002049,UBERON:0002200,UBERON:0006876,UBERON:0010317,UBERON:0007798,UBERON:0001778,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0004535,UBERON:0002104,UBERON:0001801,UBERON:0004456,UBERON:0001456,UBERON:0001775,UBERON:0010230,UBERON:0001009
 +
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000064,CL:0000075,CL:0000066,CL:0002371,CL:0000710,CL:0000255,CL:0002077,CL:0000067,CL:0005012,CL:0002304
 
|ancestors_in_disease_facet=
 
|ancestors_in_disease_facet=
 +
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000040
 
|comment=
 
|comment=
 
|created_by=
 
|created_by=
 
|creation_date=
 
|creation_date=
 +
|data_phase=2
 +
|datafreeze_phase=2
 
|def=
 
|def=
|
+
|expression_enrichment_score=
 
|fonse_cell_line=
 
|fonse_cell_line=
 
|fonse_cell_line_closure=
 
|fonse_cell_line_closure=
Line 35: Line 44:
 
|fonse_treatment_closure=
 
|fonse_treatment_closure=
 
|has_quality=
 
|has_quality=
 +
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Ciliary%2520Epithelial%2520Cells%252c%2520donor2.CNhs11966.11323-117D9.hg19.nobarcode.bam
 +
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Ciliary%2520Epithelial%2520Cells%252c%2520donor2.CNhs11966.11323-117D9.hg19.ctss.bed.gz
 +
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Ciliary%2520Epithelial%2520Cells%252c%2520donor2.CNhs11966.11323-117D9.hg19.nobarcode.rdna.fa.gz
 +
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Ciliary%2520Epithelial%2520Cells%252c%2520donor2.CNhs11966.11323-117D9.hg38.nobarcode.bam
 +
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Ciliary%2520Epithelial%2520Cells%252c%2520donor2.CNhs11966.11323-117D9.hg38.nobarcode.ctss.bed.gz
 
|id=FF:11323-117D9
 
|id=FF:11323-117D9
|is_a=EFO:0002091;;FF:0000002;;FF:0000040;;FF:0000210
+
|is_a=EFO:0002091;;FF:0000040
 +
|is_obsolete=
 +
|library_id=CNhs11966
 +
|library_id_phase_based=2:CNhs11966
 +
|microRNAs=
 +
|microRNAs_nn=
 +
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11323
 +
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.CTTGTA.11323
 +
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11323
 +
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.CTTGTA.11323
 
|name=Ciliary Epithelial Cells, donor2
 
|name=Ciliary Epithelial Cells, donor2
 
|namespace=FANTOM5
 
|namespace=FANTOM5
Line 42: Line 65:
 
|profile_cagescan=,,,
 
|profile_cagescan=,,,
 
|profile_hcage=CNhs11966,LSID836,release011,COMPLETED
 
|profile_hcage=CNhs11966,LSID836,release011,COMPLETED
|profile_rnaseq=,,,
+
|profile_rnaseq=
 
|profile_srnaseq=SRhi10013,,,
 
|profile_srnaseq=SRhi10013,,,
 +
|refex=http://refex.dbcls.jp/genelist.php?lang
 +
|repeat_enrich_byfamily=0,0,0.0434875120355909,0,0,0,0,0.115434902905871,0,0.132065373289004,0.0791242455243661,0,0,0,0,0,0,0,0,0,0,0,0,0,0.599210757141328,0,0,0,0,0,0.269468174384463,0,0,0.0885067329264789,0,0,0,0,0,0,0,0,0,0,0,0,0.397544685492595,0.0869750240711818,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.367426070652521,0,0.0348358215180892,0.159404390993283,0.0624120297506781,0,0,0.309555044281998,0,0,0,0,0,0,0,0,0.159404390993283,0,0,0,0,0,0,0,0,0,0,0,0,0.0434875120355909,0,0.0209972071448032,0.159404390993283,0,0,0,0.02597602919057,0.0160031446659826,0,0.221463322705341,0.0797021954966415,0.0869750240711818,-0.0110603271665246,0.280456857309611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0143580674302096,0.159404390993283,0,0,0.310351049222001,0.491814789290924,0.0869750240711818,0,0.0869750240711818,0,0,0
 +
|repeat_enrich_byname=0,0,0,0,-0.0110603271665246,0.0869750240711818,0.0869750240711818,0,0.159404390993283,0.0869750240711818,0,0,0,0.221463322705341,0,0,0.120247195366956,0.137876466496129,0.591979091934517,0.0779481801818692,0,0,-0.0022894252218645,0,0,0,0,0.0869750240711818,0,0,0,0,0.0312845240407186,0,0.35648611990578,0.123189707532232,0,0,0,0.104564426448382,0.0185316488437093,0,0.13235680872745,0.299081809575153,0,0,0,0,0.262553408654832,0,0.1005838389116,0.19303276466884,0.729531076286108,0.316910327933852,0.0647015551703604,0,0,0,-0.0254326229155605,-0.382298325261454,0,0,0.00140985578035865,0.0241398333459901,0,0,0.116446164064253,0,-0.11605818667825,0.033112017454776,0,0.149081891675876,0,0,0,0,0,0.0869750240711818,0,0,0,0,0,0.123870511710283,-0.240013572607787,0,0.0753632009906409,0.0869750240711818,0.0292744525610181,-0.315593993159034,0,0.0703856556053604,0.52288781619896,0.109723423502069,0.0153686007590127,0.378324670109932,0.0138025033491747,0.432776894429822,-0.0978692935617034,0.0169418075144533,0.153581259572773,0.259496822123956,0.216916951945247,0,0.0293479446943106,0.287985613968716,0.0667469419177733,-0.0659264687735412,0.00186093178983547,0.199026796135541,0.111954360455839,0,0,0,-0.15191404748351,0,-0.0508355821856488,-0.122688643824253,0.0207914012118604,0.186076945608901,-0.183276459290382,0.124937839021997,0.134901359329853,0.438735241673173,0.0500542927192932,0.0293620851590111,0.301933066186896,0.0320876629224468,0,0.031339397373382,0.0756311389260166,0.156618220096933,0.0823726349734435,0.0463244275846025,0.105132007796185,-0.0683442610773682,0.0869750240711818,0.220436421076035,0.0609839978848339,0.159404390993283,0,-0.071286485255524,0,0,0,0.0707412876575582,0.0869750240711818,-0.0282665315629618,-0.539492143030166,0.0428973714367124,0,0.0201337925448883,0.0697079056773252,-0.0435407075446426,0,-0.230714933644207,-0.0427663706175222,0.0259297273808243,-0.00366372792580383,0,0.0591432932723107,-0.189171123332225,-0.164864233723985,-0.0549687347392165,0.163016495893516,-0.117242194021812,-0.0101818435982031,0.02597602919057,-0.0718639240586935,0,0.78287089658814,0,0.278586138223067,-0.0434175434900901,0,0.174284720038816,0.159404390993283,-0.0102386988438756,0,-0.253094997002417,0.0700833566679527,0.0162078414886563,-0.0329430058573522,-0.163536441588429,-0.385778612143662,0,0.0636454540809213,0.468903242223117,0,0.00532598348129909,0.0304348970077702,0,0.326111603036506,-0.221217280141437,-0.211650427864589,0.102714678688505,0,-0.00476626145017967,0,0,0.134774263867434,0.131950032888132,0,0.0456918774236145,0.143330853276359,0.240055664755557,-0.115971073434934,0.159404390993283,0,0.572337513206792,0,0,-0.330175130825773,0,0.354531077070864,0.070677538255361,0.0104986035724016,0.621822723187833,0,0,-0.0905527418939939,0,0.306802285214339,0,0,0.0258716363934335,0,0,0,0.275752932992257,0,0,0,0,0,0.0434875120355909,0,0.00906507909936956,0.00724275283864939,-0.0308294504743313,0,0.0955198879273986,0,0,0.0869750240711818,0,0.0869750240711818,-0.00449621644388631,0.0745216323655666,1.06606531068652,0.32579467389056,0.0792717965920907,0.0984459070289209,0,0,0,0,0.151702668099046,0.164189508557797,0,0.192141173244485,0.275752932992257,0,0,0,0.0732634012040719,0,0,0,0.0434875120355909,0.266273422688453,0.175115015695172,0,0,0,0.401509323625939,0,0,0,0.0393152365454975,0.0161889042183676,0,0,0,0,-0.0473881918314911,0.242422000195275,0.0105921138553411,-0.1012550777742,0.669428919016219,0.52827853004039,0,0.0869750240711818,0.554445382245542,0,0,-0.0515319427202141,0.00693415072123502,0.159404390993283,0.091119442636366,0,0,0,0,0,0,-0.0549101214064724,0,0,0,0,0,0,0,0,0,0,0.0869750240711818,-0.19661188336909,-0.0922240566585104,0.211693262475149,0,0,0,0,0,0,0.0866256382737675,0.0884818646445625,0.0434875120355909,0,0.114928483926421,0,0,0.159404390993283,0,0,0.141803800090677,0,0,0,0,0,0.0624120297506781,0,0,0,0.0869750240711818,0.0712734669775504,0,0,0.129536539301581,0,0.00599822450011435,0,0,0,0,0,0,0,0,0,0,0,0.15243384695681,0.345458360554458,0,0.0869750240711818,0,0,0,0,0,0.132065373289004,0,0.0869750240711818,0,0,-0.113884373708977,0,0,0,0.508433354964763,0,0.115434902905871,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0434875120355909,0.0797021954966415,0,0,0.314603944915622,-0.000497091439761551,0.0869750240711818,0.0362015264194978,0,0,0.11647105144302,0,0,0,0,0,0,0.0121470880070638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159404390993283,0,0,0,0,0,0,0.145478164077697,0,0,0,0,0,0,0,0.269468174384463,0,0,-0.0920328098005262,0,0,0,0,0.146167550608399,0,0.413855518228998,0.465326195369302,0.048025254218078,0,0,0,0.390105763890634,0.367426070652521,0,0.0247948755899005,0.159404390993283,-0.0667773874189013,0,0,0,0,0,0,0,0,0.159404390993283,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.599210757141328,0,0,0,0,0,0,0,0,0,0,0,0,0.162001939871058,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0869750240711818,0.0869750240711818,0,0,0,0,0,0,0.0456908322212251,0.0869750240711818,0,0,0.324003879742117,0,0,0,0,0,0,0,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|rna_box=117
 
|rna_box=117
 
|rna_catalog_number=SC6585
 
|rna_catalog_number=SC6585
Line 56: Line 82:
 
|rna_tube_id=117D9
 
|rna_tube_id=117D9
 
|rna_weight_ug=10
 
|rna_weight_ug=10
 +
|rnaseq_library_id=SRhi10013.CTTGTA
 
|sample_age=fetal
 
|sample_age=fetal
 +
|sample_category=primary cells
 
|sample_cell_catalog=N/A
 
|sample_cell_catalog=N/A
 
|sample_cell_line=
 
|sample_cell_line=
Line 69: Line 97:
 
|sample_ethnicity=unknown
 
|sample_ethnicity=unknown
 
|sample_experimental_condition=
 
|sample_experimental_condition=
 +
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.58432752374909e-247!GO:0005737;cytoplasm;1.30545873043972e-202!GO:0043226;organelle;1.21640324722851e-191!GO:0043229;intracellular organelle;1.80299482387429e-191!GO:0043231;intracellular membrane-bound organelle;4.90273474594507e-184!GO:0043227;membrane-bound organelle;1.41119022789752e-183!GO:0044422;organelle part;4.59986180025076e-144!GO:0044446;intracellular organelle part;9.70362517977185e-143!GO:0044444;cytoplasmic part;3.10093534545728e-131!GO:0032991;macromolecular complex;1.18089907315967e-97!GO:0030529;ribonucleoprotein complex;9.64320595445123e-88!GO:0044237;cellular metabolic process;1.81800774750152e-83!GO:0044238;primary metabolic process;2.01483812582546e-82!GO:0005515;protein binding;4.00958013605942e-81!GO:0043170;macromolecule metabolic process;6.23855371190287e-73!GO:0043233;organelle lumen;1.79626316562747e-71!GO:0031974;membrane-enclosed lumen;1.79626316562747e-71!GO:0005634;nucleus;4.25340601798662e-71!GO:0003723;RNA binding;3.13035525573884e-70!GO:0044428;nuclear part;8.63808352413864e-69!GO:0005739;mitochondrion;2.70680635176532e-66!GO:0016043;cellular component organization and biogenesis;9.5365770608972e-56!GO:0005840;ribosome;2.86953428853863e-55!GO:0031090;organelle membrane;8.01847696197656e-50!GO:0006412;translation;1.10522640015956e-49!GO:0043234;protein complex;1.10416283858938e-48!GO:0003735;structural constituent of ribosome;1.79949297425972e-48!GO:0019538;protein metabolic process;1.73032516892647e-47!GO:0006396;RNA processing;5.93343506505769e-46!GO:0044429;mitochondrial part;1.78926563455914e-44!GO:0033036;macromolecule localization;2.40991113361108e-44!GO:0009058;biosynthetic process;2.96429592426122e-44!GO:0015031;protein transport;1.61011713322082e-43!GO:0033279;ribosomal subunit;1.16226681730552e-42!GO:0044260;cellular macromolecule metabolic process;1.46687395923804e-42!GO:0044267;cellular protein metabolic process;6.10773487212111e-42!GO:0044249;cellular biosynthetic process;1.00053586666145e-41!GO:0031981;nuclear lumen;1.2787326731598e-41!GO:0043283;biopolymer metabolic process;1.92655625153947e-41!GO:0008104;protein localization;1.05546634834556e-40!GO:0031967;organelle envelope;2.95967920787045e-40!GO:0045184;establishment of protein localization;3.11766960322733e-40!GO:0031975;envelope;7.49796820115648e-40!GO:0005829;cytosol;1.98893634889104e-38!GO:0009059;macromolecule biosynthetic process;4.49712168125201e-38!GO:0043228;non-membrane-bound organelle;9.20507798345945e-38!GO:0043232;intracellular non-membrane-bound organelle;9.20507798345945e-38!GO:0046907;intracellular transport;3.91321430085263e-37!GO:0016071;mRNA metabolic process;4.99925070077362e-37!GO:0006996;organelle organization and biogenesis;5.89176899294662e-37!GO:0010467;gene expression;1.41610261023277e-36!GO:0008380;RNA splicing;1.24095351506155e-34!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.51287823765598e-34!GO:0065003;macromolecular complex assembly;1.16863774464015e-32!GO:0006397;mRNA processing;2.44357009429502e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.02766182103461e-31!GO:0006886;intracellular protein transport;1.87317732272522e-30!GO:0022607;cellular component assembly;1.60736390770842e-29!GO:0005740;mitochondrial envelope;3.74577767511772e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.76380488670716e-28!GO:0019866;organelle inner membrane;2.6894002168863e-27!GO:0031966;mitochondrial membrane;1.55189529393453e-26!GO:0006259;DNA metabolic process;6.83941538087151e-26!GO:0005654;nucleoplasm;2.05569851062694e-25!GO:0005743;mitochondrial inner membrane;2.3278061766532e-25!GO:0044445;cytosolic part;5.85237300398601e-25!GO:0005681;spliceosome;2.47921478847567e-24!GO:0051641;cellular localization;1.40033787265595e-23!GO:0051649;establishment of cellular localization;1.5069656829898e-23!GO:0000166;nucleotide binding;3.29074865167949e-23!GO:0006119;oxidative phosphorylation;5.97832307101961e-23!GO:0007049;cell cycle;1.71283376833848e-22!GO:0015935;small ribosomal subunit;4.32799717833804e-22!GO:0015934;large ribosomal subunit;1.12413390916125e-21!GO:0012505;endomembrane system;2.9523079886116e-21!GO:0044451;nucleoplasm part;1.20545134265044e-20!GO:0044455;mitochondrial membrane part;1.20545134265044e-20!GO:0003676;nucleic acid binding;6.24411658407289e-20!GO:0031980;mitochondrial lumen;1.45911952269868e-19!GO:0005759;mitochondrial matrix;1.45911952269868e-19!GO:0016462;pyrophosphatase activity;3.11589709291414e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.17183604639244e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;6.06121422562585e-19!GO:0006457;protein folding;2.38700324278802e-18!GO:0016874;ligase activity;2.41802157515358e-18!GO:0017111;nucleoside-triphosphatase activity;2.76415596954989e-18!GO:0005783;endoplasmic reticulum;1.2996923506644e-17!GO:0048770;pigment granule;1.45159669285666e-17!GO:0042470;melanosome;1.45159669285666e-17!GO:0005746;mitochondrial respiratory chain;1.60520342307392e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.82691050849537e-17!GO:0022402;cell cycle process;4.00536395125735e-17!GO:0022618;protein-RNA complex assembly;5.28019968839378e-17!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.30943919501519e-16!GO:0006512;ubiquitin cycle;2.32329115579741e-16!GO:0005794;Golgi apparatus;3.37823730667289e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;4.30591434727398e-16!GO:0000502;proteasome complex (sensu Eukaryota);4.88312653729085e-16!GO:0050136;NADH dehydrogenase (quinone) activity;5.68911733698792e-16!GO:0003954;NADH dehydrogenase activity;5.68911733698792e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.68911733698792e-16!GO:0005730;nucleolus;5.72658810496985e-16!GO:0019941;modification-dependent protein catabolic process;6.84793170615309e-16!GO:0043632;modification-dependent macromolecule catabolic process;6.84793170615309e-16!GO:0044265;cellular macromolecule catabolic process;7.55973460506744e-16!GO:0000278;mitotic cell cycle;7.9022110805876e-16!GO:0005761;mitochondrial ribosome;8.37431527237938e-16!GO:0000313;organellar ribosome;8.37431527237938e-16!GO:0006511;ubiquitin-dependent protein catabolic process;9.14619790304579e-16!GO:0032553;ribonucleotide binding;9.36465049630897e-16!GO:0032555;purine ribonucleotide binding;9.36465049630897e-16!GO:0044257;cellular protein catabolic process;1.11888072258875e-15!GO:0044432;endoplasmic reticulum part;1.29597035117421e-15!GO:0006605;protein targeting;3.11147377762221e-15!GO:0017076;purine nucleotide binding;3.71213711259557e-15!GO:0043285;biopolymer catabolic process;3.99962523125376e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.28032314846914e-15!GO:0008134;transcription factor binding;4.72344008411691e-15!GO:0051186;cofactor metabolic process;7.96805253447084e-15!GO:0048193;Golgi vesicle transport;1.45299243590469e-14!GO:0042775;organelle ATP synthesis coupled electron transport;3.3579598266704e-14!GO:0042773;ATP synthesis coupled electron transport;3.3579598266704e-14!GO:0030964;NADH dehydrogenase complex (quinone);4.13171723116568e-14!GO:0045271;respiratory chain complex I;4.13171723116568e-14!GO:0005747;mitochondrial respiratory chain complex I;4.13171723116568e-14!GO:0009057;macromolecule catabolic process;5.38688201732604e-14!GO:0008135;translation factor activity, nucleic acid binding;5.84182837719605e-14!GO:0016070;RNA metabolic process;5.95410847234909e-14!GO:0030163;protein catabolic process;6.60334067043245e-14!GO:0043412;biopolymer modification;1.1650330900065e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.39460708429175e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.58551512964515e-13!GO:0044248;cellular catabolic process;2.61576425784205e-13!GO:0006974;response to DNA damage stimulus;3.3931197606494e-13!GO:0051276;chromosome organization and biogenesis;3.85616741669518e-13!GO:0051082;unfolded protein binding;4.63819306219178e-13!GO:0005694;chromosome;6.36349801562612e-13!GO:0005635;nuclear envelope;9.08447946095815e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;9.42534869003062e-13!GO:0000375;RNA splicing, via transesterification reactions;9.42534869003062e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;9.42534869003062e-13!GO:0016192;vesicle-mediated transport;1.26340294418967e-12!GO:0031965;nuclear membrane;1.37745466072903e-12!GO:0005524;ATP binding;1.71329403247889e-12!GO:0006464;protein modification process;2.3911855304347e-12!GO:0006732;coenzyme metabolic process;2.71406090251488e-12!GO:0032559;adenyl ribonucleotide binding;3.11133317621952e-12!GO:0044427;chromosomal part;5.01427356008359e-12!GO:0042254;ribosome biogenesis and assembly;1.07497923660999e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;1.11232678357552e-11!GO:0009055;electron carrier activity;1.29462705146398e-11!GO:0030554;adenyl nucleotide binding;1.4789252154395e-11!GO:0022403;cell cycle phase;1.52122238044816e-11!GO:0000087;M phase of mitotic cell cycle;3.53772342901663e-11!GO:0003743;translation initiation factor activity;3.57464777539582e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.70251690294231e-11!GO:0044453;nuclear membrane part;3.95753871479602e-11!GO:0006323;DNA packaging;5.1155855255429e-11!GO:0007067;mitosis;5.28749472675778e-11!GO:0006281;DNA repair;6.65044518615255e-11!GO:0005789;endoplasmic reticulum membrane;7.33694673397509e-11!GO:0006413;translational initiation;8.85751574720861e-11!GO:0016604;nuclear body;1.14294551097732e-10!GO:0043687;post-translational protein modification;1.15591807140838e-10!GO:0051301;cell division;1.83838668703301e-10!GO:0048523;negative regulation of cellular process;1.95943421381056e-10!GO:0000074;regulation of progression through cell cycle;2.13096153142937e-10!GO:0006913;nucleocytoplasmic transport;2.15497148757073e-10!GO:0051726;regulation of cell cycle;2.15497148757073e-10!GO:0009259;ribonucleotide metabolic process;3.75263737073273e-10!GO:0051169;nuclear transport;5.24178528047404e-10!GO:0005793;ER-Golgi intermediate compartment;5.63214977969584e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.46886389529854e-10!GO:0065004;protein-DNA complex assembly;1.03164037912543e-09!GO:0006446;regulation of translational initiation;1.17062525803373e-09!GO:0006163;purine nucleotide metabolic process;1.18138054862063e-09!GO:0042623;ATPase activity, coupled;1.48229165387878e-09!GO:0008565;protein transporter activity;1.82279090760309e-09!GO:0016887;ATPase activity;1.97592185174776e-09!GO:0012501;programmed cell death;2.07507585697713e-09!GO:0008639;small protein conjugating enzyme activity;2.21035974196381e-09!GO:0003712;transcription cofactor activity;2.61204201083937e-09!GO:0004842;ubiquitin-protein ligase activity;3.0676891965014e-09!GO:0009719;response to endogenous stimulus;3.16828473871198e-09!GO:0004386;helicase activity;3.41668186224767e-09!GO:0006333;chromatin assembly or disassembly;3.50187562899262e-09!GO:0006164;purine nucleotide biosynthetic process;3.58059609313338e-09!GO:0009150;purine ribonucleotide metabolic process;3.58420594838105e-09!GO:0005643;nuclear pore;3.7032323069728e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.81512502298961e-09!GO:0006915;apoptosis;3.81557357509843e-09!GO:0006461;protein complex assembly;3.86628887367768e-09!GO:0016607;nuclear speck;4.20752271695961e-09!GO:0006399;tRNA metabolic process;4.39687079578295e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.69308505007025e-09!GO:0009260;ribonucleotide biosynthetic process;4.70225218335572e-09!GO:0009060;aerobic respiration;4.76203728118801e-09!GO:0006260;DNA replication;5.21651224833818e-09!GO:0030120;vesicle coat;6.15523417758597e-09!GO:0030662;coated vesicle membrane;6.15523417758597e-09!GO:0048475;coated membrane;7.74560055032188e-09!GO:0030117;membrane coat;7.74560055032188e-09!GO:0000785;chromatin;8.60698007396203e-09!GO:0019787;small conjugating protein ligase activity;8.60698007396203e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.04275188166596e-08!GO:0048519;negative regulation of biological process;1.11565146587785e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.14031489305459e-08!GO:0008219;cell death;1.48658769344975e-08!GO:0016265;death;1.48658769344975e-08!GO:0000279;M phase;1.54314797525172e-08!GO:0015630;microtubule cytoskeleton;2.12268491158931e-08!GO:0045333;cellular respiration;2.80604396674832e-08!GO:0065002;intracellular protein transport across a membrane;2.93948163265575e-08!GO:0051188;cofactor biosynthetic process;3.69350747356125e-08!GO:0017038;protein import;3.79917989756779e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.79917989756779e-08!GO:0004812;aminoacyl-tRNA ligase activity;3.79917989756779e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.79917989756779e-08!GO:0006888;ER to Golgi vesicle-mediated transport;3.81551373264755e-08!GO:0015986;ATP synthesis coupled proton transport;4.21345478847049e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.21345478847049e-08!GO:0006334;nucleosome assembly;4.4615845077447e-08!GO:0006403;RNA localization;4.81267837277433e-08!GO:0009141;nucleoside triphosphate metabolic process;5.5621322594492e-08!GO:0016881;acid-amino acid ligase activity;6.07134395214431e-08!GO:0030532;small nuclear ribonucleoprotein complex;6.07134395214431e-08!GO:0009199;ribonucleoside triphosphate metabolic process;6.15666496784177e-08!GO:0050657;nucleic acid transport;7.0055368116727e-08!GO:0051236;establishment of RNA localization;7.0055368116727e-08!GO:0050658;RNA transport;7.0055368116727e-08!GO:0009056;catabolic process;7.11952524442363e-08!GO:0009142;nucleoside triphosphate biosynthetic process;7.57714115784457e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.57714115784457e-08!GO:0043038;amino acid activation;7.57714115784457e-08!GO:0006418;tRNA aminoacylation for protein translation;7.57714115784457e-08!GO:0043039;tRNA aminoacylation;7.57714115784457e-08!GO:0006364;rRNA processing;8.31555328176277e-08!GO:0008026;ATP-dependent helicase activity;9.65311959099596e-08!GO:0003924;GTPase activity;1.00532523811276e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.02117328027437e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.02117328027437e-07!GO:0019829;cation-transporting ATPase activity;1.03637103647363e-07!GO:0007005;mitochondrion organization and biogenesis;1.14175573613474e-07!GO:0050794;regulation of cellular process;1.29197535127745e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.30157075888423e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.30157075888423e-07!GO:0006366;transcription from RNA polymerase II promoter;1.83088309706603e-07!GO:0016072;rRNA metabolic process;2.03349615726109e-07!GO:0009117;nucleotide metabolic process;2.19216846664334e-07!GO:0031497;chromatin assembly;2.52691321200849e-07!GO:0044431;Golgi apparatus part;2.84201045729612e-07!GO:0005768;endosome;3.33164281344175e-07!GO:0046930;pore complex;3.37517257542071e-07!GO:0043566;structure-specific DNA binding;3.50953814829146e-07!GO:0006099;tricarboxylic acid cycle;3.54419350329958e-07!GO:0046356;acetyl-CoA catabolic process;3.54419350329958e-07!GO:0051246;regulation of protein metabolic process;5.58716414045531e-07!GO:0007010;cytoskeleton organization and biogenesis;5.96374773123971e-07!GO:0016023;cytoplasmic membrane-bound vesicle;6.42435179555322e-07!GO:0006793;phosphorus metabolic process;6.81064383389921e-07!GO:0006796;phosphate metabolic process;6.81064383389921e-07!GO:0016469;proton-transporting two-sector ATPase complex;7.11862313878706e-07!GO:0046034;ATP metabolic process;7.18222586317848e-07!GO:0006084;acetyl-CoA metabolic process;7.24264122352177e-07!GO:0006754;ATP biosynthetic process;7.29304764889509e-07!GO:0006753;nucleoside phosphate metabolic process;7.29304764889509e-07!GO:0031988;membrane-bound vesicle;7.5212752259117e-07!GO:0005839;proteasome core complex (sensu Eukaryota);7.5212752259117e-07!GO:0005788;endoplasmic reticulum lumen;7.55960125536996e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.01891907024459e-06!GO:0003697;single-stranded DNA binding;1.10125535281163e-06!GO:0045259;proton-transporting ATP synthase complex;1.27040033671668e-06!GO:0016853;isomerase activity;1.43615615101543e-06!GO:0045786;negative regulation of progression through cell cycle;1.5696241597564e-06!GO:0031324;negative regulation of cellular metabolic process;2.03356605560857e-06!GO:0005667;transcription factor complex;2.12530664714044e-06!GO:0009108;coenzyme biosynthetic process;2.12645195929841e-06!GO:0015078;hydrogen ion transmembrane transporter activity;2.12645195929841e-06!GO:0016740;transferase activity;2.19686336338363e-06!GO:0031252;leading edge;2.40443904007559e-06!GO:0051028;mRNA transport;2.46815677757242e-06!GO:0032446;protein modification by small protein conjugation;2.75729476197569e-06!GO:0005762;mitochondrial large ribosomal subunit;3.13677606802772e-06!GO:0000315;organellar large ribosomal subunit;3.13677606802772e-06!GO:0009109;coenzyme catabolic process;3.35519509969243e-06!GO:0043067;regulation of programmed cell death;3.65180563133002e-06!GO:0006752;group transfer coenzyme metabolic process;3.89815621750469e-06!GO:0016568;chromatin modification;4.13932253320196e-06!GO:0042981;regulation of apoptosis;4.51707011062177e-06!GO:0016567;protein ubiquitination;4.55703883161101e-06!GO:0004298;threonine endopeptidase activity;5.0777134218039e-06!GO:0016126;sterol biosynthetic process;5.22220537219152e-06!GO:0016310;phosphorylation;5.24407845011708e-06!GO:0000245;spliceosome assembly;5.28914230092622e-06!GO:0005798;Golgi-associated vesicle;5.7415347540804e-06!GO:0031410;cytoplasmic vesicle;5.98423949381075e-06!GO:0005525;GTP binding;6.13793574108604e-06!GO:0031982;vesicle;6.3704260241298e-06!GO:0009892;negative regulation of metabolic process;6.43329297533943e-06!GO:0043069;negative regulation of programmed cell death;6.49660240217881e-06!GO:0050789;regulation of biological process;6.66416307761988e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.11022877720664e-06!GO:0030036;actin cytoskeleton organization and biogenesis;7.35907959798915e-06!GO:0016564;transcription repressor activity;8.09499034374982e-06!GO:0016491;oxidoreductase activity;8.58535766085033e-06!GO:0051187;cofactor catabolic process;8.85185726114727e-06!GO:0006613;cotranslational protein targeting to membrane;9.19708342929771e-06!GO:0003714;transcription corepressor activity;9.74338938106253e-06!GO:0008092;cytoskeletal protein binding;1.08014282913751e-05!GO:0051170;nuclear import;1.11638879319874e-05!GO:0051329;interphase of mitotic cell cycle;1.22419976642373e-05!GO:0043623;cellular protein complex assembly;1.32580707938132e-05!GO:0043066;negative regulation of apoptosis;1.4148493469673e-05!GO:0051325;interphase;1.44997157080214e-05!GO:0016859;cis-trans isomerase activity;1.52210048154795e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.54914942790047e-05!GO:0006695;cholesterol biosynthetic process;1.80133130455844e-05!GO:0006606;protein import into nucleus;2.10742000201737e-05!GO:0000139;Golgi membrane;2.32558989429379e-05!GO:0006916;anti-apoptosis;2.60065132410109e-05!GO:0000151;ubiquitin ligase complex;2.8135142529117e-05!GO:0015980;energy derivation by oxidation of organic compounds;3.0681667497824e-05!GO:0005905;coated pit;3.21264090299716e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.24353738231149e-05!GO:0019899;enzyme binding;3.45107827705468e-05!GO:0005813;centrosome;3.72746024877239e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.73613419477405e-05!GO:0003724;RNA helicase activity;4.09832636611257e-05!GO:0032561;guanyl ribonucleotide binding;4.38234380696628e-05!GO:0019001;guanyl nucleotide binding;4.38234380696628e-05!GO:0005819;spindle;4.57201984146548e-05!GO:0008654;phospholipid biosynthetic process;4.88456076310547e-05!GO:0016787;hydrolase activity;5.17431952877238e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.70926450922156e-05!GO:0030029;actin filament-based process;5.76053761596168e-05!GO:0000314;organellar small ribosomal subunit;6.50451431405319e-05!GO:0005763;mitochondrial small ribosomal subunit;6.50451431405319e-05!GO:0008361;regulation of cell size;6.55459676298508e-05!GO:0044440;endosomal part;7.12945982195777e-05!GO:0010008;endosome membrane;7.12945982195777e-05!GO:0030133;transport vesicle;7.45571780736276e-05!GO:0016049;cell growth;7.6634985987832e-05!GO:0030867;rough endoplasmic reticulum membrane;7.92098984460574e-05!GO:0016481;negative regulation of transcription;8.45025906277252e-05!GO:0019843;rRNA binding;9.76687721534995e-05!GO:0030118;clathrin coat;9.78513466927806e-05!GO:0005815;microtubule organizing center;9.99800376356734e-05!GO:0045454;cell redox homeostasis;0.000100070634787659!GO:0051427;hormone receptor binding;0.000100953799941938!GO:0001558;regulation of cell growth;0.000107337507688488!GO:0043021;ribonucleoprotein binding;0.000108950941476869!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000133591433662998!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000137752809875643!GO:0005770;late endosome;0.000145046074745729!GO:0003713;transcription coactivator activity;0.00015560220006263!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000157833241355106!GO:0016563;transcription activator activity;0.000172011640822598!GO:0005791;rough endoplasmic reticulum;0.000175935290467059!GO:0035257;nuclear hormone receptor binding;0.00021419141590227!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000216423737762203!GO:0016779;nucleotidyltransferase activity;0.000216423737762203!GO:0007264;small GTPase mediated signal transduction;0.000223082991488228!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000230469400605017!GO:0005048;signal sequence binding;0.000240550128857966!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000266377937905072!GO:0005885;Arp2/3 protein complex;0.000273945635893004!GO:0005769;early endosome;0.000276499907968828!GO:0033116;ER-Golgi intermediate compartment membrane;0.000292021837978237!GO:0048471;perinuclear region of cytoplasm;0.00031620095088384!GO:0009165;nucleotide biosynthetic process;0.00031769300539979!GO:0030658;transport vesicle membrane;0.000322227591838272!GO:0016363;nuclear matrix;0.000340294728977668!GO:0051168;nuclear export;0.000343719179711737!GO:0008610;lipid biosynthetic process;0.000348788462380229!GO:0003729;mRNA binding;0.000368738787260922!GO:0006414;translational elongation;0.00038332654361173!GO:0006612;protein targeting to membrane;0.000387495500194065!GO:0006091;generation of precursor metabolites and energy;0.00042336370418311!GO:0008250;oligosaccharyl transferase complex;0.000430791523732256!GO:0043681;protein import into mitochondrion;0.000435119439561049!GO:0006839;mitochondrial transport;0.000435528363535855!GO:0000075;cell cycle checkpoint;0.000439963818438914!GO:0007051;spindle organization and biogenesis;0.000440801927506761!GO:0006626;protein targeting to mitochondrion;0.000443648802216078!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000486239080137389!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000499978340178719!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000574799364087421!GO:0004576;oligosaccharyl transferase activity;0.000593959470879648!GO:0006261;DNA-dependent DNA replication;0.00063977198109408!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000640232839313303!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000654500241932338!GO:0051920;peroxiredoxin activity;0.000673557744594175!GO:0051789;response to protein stimulus;0.00071182485677971!GO:0006986;response to unfolded protein;0.00071182485677971!GO:0005874;microtubule;0.000728812511921824!GO:0003899;DNA-directed RNA polymerase activity;0.000757220719392611!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00082896296992043!GO:0008186;RNA-dependent ATPase activity;0.000838338900233427!GO:0000786;nucleosome;0.000952596959140195!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00101623870958144!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00101623870958144!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00101623870958144!GO:0031968;organelle outer membrane;0.00103600195297448!GO:0003690;double-stranded DNA binding;0.00103600195297448!GO:0030119;AP-type membrane coat adaptor complex;0.00109529441706943!GO:0019867;outer membrane;0.00124006644948259!GO:0030660;Golgi-associated vesicle membrane;0.0012712943655239!GO:0001726;ruffle;0.00134759856864034!GO:0030663;COPI coated vesicle membrane;0.00137638719368202!GO:0030126;COPI vesicle coat;0.00137638719368202!GO:0007050;cell cycle arrest;0.00139037307620747!GO:0000775;chromosome, pericentric region;0.00140651322732774!GO:0006891;intra-Golgi vesicle-mediated transport;0.00142386148211229!GO:0018196;peptidyl-asparagine modification;0.00143630105643068!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00143630105643068!GO:0000059;protein import into nucleus, docking;0.00153024578884687!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00153654591724672!GO:0030132;clathrin coat of coated pit;0.00156245361128964!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00157980918727978!GO:0042802;identical protein binding;0.00160433391057622!GO:0030131;clathrin adaptor complex;0.00168913115404659!GO:0006402;mRNA catabolic process;0.00175388827694178!GO:0016044;membrane organization and biogenesis;0.00186353273489445!GO:0006383;transcription from RNA polymerase III promoter;0.00188988303538326!GO:0048500;signal recognition particle;0.0019056261827305!GO:0065009;regulation of a molecular function;0.00207289893527275!GO:0030125;clathrin vesicle coat;0.00212211949070982!GO:0030665;clathrin coated vesicle membrane;0.00212211949070982!GO:0043284;biopolymer biosynthetic process;0.0022556955415052!GO:0005741;mitochondrial outer membrane;0.00229662519204378!GO:0004004;ATP-dependent RNA helicase activity;0.00232728642399187!GO:0005773;vacuole;0.00239858247871971!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00247008250922024!GO:0007243;protein kinase cascade;0.0026330860524115!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0026562343046457!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0026562343046457!GO:0046474;glycerophospholipid biosynthetic process;0.00274051490455688!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00279702610447546!GO:0007006;mitochondrial membrane organization and biogenesis;0.00279702610447546!GO:0040008;regulation of growth;0.00292627696721917!GO:0030137;COPI-coated vesicle;0.0032669761107418!GO:0030659;cytoplasmic vesicle membrane;0.00328734705495331!GO:0008286;insulin receptor signaling pathway;0.0033855481293342!GO:0007093;mitotic cell cycle checkpoint;0.00340575328373018!GO:0019222;regulation of metabolic process;0.00344207074940844!GO:0046467;membrane lipid biosynthetic process;0.00362297800527674!GO:0051252;regulation of RNA metabolic process;0.00379423319836923!GO:0015631;tubulin binding;0.00379813824597155!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00400364420994313!GO:0003684;damaged DNA binding;0.00424570908150175!GO:0031072;heat shock protein binding;0.00432627704597667!GO:0030134;ER to Golgi transport vesicle;0.00432627704597667!GO:0008312;7S RNA binding;0.00437369172952904!GO:0030176;integral to endoplasmic reticulum membrane;0.00440369371984732!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00458177088688775!GO:0045047;protein targeting to ER;0.00458177088688775!GO:0033673;negative regulation of kinase activity;0.00458177088688775!GO:0006469;negative regulation of protein kinase activity;0.00458177088688775!GO:0048468;cell development;0.00459466972912004!GO:0005869;dynactin complex;0.00474233456252253!GO:0008139;nuclear localization sequence binding;0.00485838368276176!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00487065624234434!GO:0015399;primary active transmembrane transporter activity;0.00487065624234434!GO:0030027;lamellipodium;0.00487065624234434!GO:0003779;actin binding;0.00487065624234434!GO:0003682;chromatin binding;0.00487065624234434!GO:0008094;DNA-dependent ATPase activity;0.00497469198807227!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00517871727415457!GO:0030127;COPII vesicle coat;0.00522737707238631!GO:0012507;ER to Golgi transport vesicle membrane;0.00522737707238631!GO:0016197;endosome transport;0.00560728608947124!GO:0006595;polyamine metabolic process;0.00563148536224511!GO:0017166;vinculin binding;0.0056685427257487!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0059262790477238!GO:0000776;kinetochore;0.0059753840072554!GO:0044433;cytoplasmic vesicle part;0.00597681693602737!GO:0006720;isoprenoid metabolic process;0.00609933972931707!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00626966956175356!GO:0008047;enzyme activator activity;0.00626966956175356!GO:0005657;replication fork;0.00642817855910867!GO:0005684;U2-dependent spliceosome;0.00648272258941802!GO:0051348;negative regulation of transferase activity;0.00653871094167692!GO:0051128;regulation of cellular component organization and biogenesis;0.00657483428726377!GO:0007265;Ras protein signal transduction;0.00662311050922493!GO:0051287;NAD binding;0.00662765238790154!GO:0005637;nuclear inner membrane;0.00665645803592413!GO:0008033;tRNA processing;0.00683618609379383!GO:0048487;beta-tubulin binding;0.00694779590163336!GO:0004674;protein serine/threonine kinase activity;0.00709630581829802!GO:0003711;transcription elongation regulator activity;0.00742846225739294!GO:0008180;signalosome;0.00758800385149368!GO:0006401;RNA catabolic process;0.00796701957518!GO:0003678;DNA helicase activity;0.00811161482061848!GO:0043488;regulation of mRNA stability;0.00825427720343364!GO:0043487;regulation of RNA stability;0.00825427720343364!GO:0045045;secretory pathway;0.0083099634313845!GO:0030880;RNA polymerase complex;0.0085057541001403!GO:0015992;proton transport;0.0085057541001403!GO:0000902;cell morphogenesis;0.00892045810355775!GO:0032989;cellular structure morphogenesis;0.00892045810355775!GO:0006740;NADPH regeneration;0.00896197371380013!GO:0006098;pentose-phosphate shunt;0.00896197371380013!GO:0006818;hydrogen transport;0.00919367557852551!GO:0006509;membrane protein ectodomain proteolysis;0.00943376554203342!GO:0033619;membrane protein proteolysis;0.00943376554203342!GO:0019798;procollagen-proline dioxygenase activity;0.00943804133207785!GO:0008168;methyltransferase activity;0.00945779657393668!GO:0016408;C-acyltransferase activity;0.00948243334329394!GO:0044452;nucleolar part;0.00955177027899009!GO:0016272;prefoldin complex;0.00963675919775775!GO:0045892;negative regulation of transcription, DNA-dependent;0.00990357795973415!GO:0044262;cellular carbohydrate metabolic process;0.00991351722810982!GO:0043022;ribosome binding;0.0100442138313577!GO:0031124;mRNA 3'-end processing;0.0104987769207894!GO:0007088;regulation of mitosis;0.0105438051870609!GO:0016741;transferase activity, transferring one-carbon groups;0.0105698667543514!GO:0000323;lytic vacuole;0.0105698667543514!GO:0005764;lysosome;0.0105698667543514!GO:0051087;chaperone binding;0.0105915949267407!GO:0065007;biological regulation;0.0108240856495837!GO:0006352;transcription initiation;0.0117739768761861!GO:0006650;glycerophospholipid metabolic process;0.0117749171174324!GO:0045893;positive regulation of transcription, DNA-dependent;0.0119853104830529!GO:0046489;phosphoinositide biosynthetic process;0.0121380177176053!GO:0005862;muscle thin filament tropomyosin;0.012496257834424!GO:0012506;vesicle membrane;0.0130696121782949!GO:0005083;small GTPase regulator activity;0.0132134957864614!GO:0016584;nucleosome positioning;0.0133545030689008!GO:0007052;mitotic spindle organization and biogenesis;0.0133776515603056!GO:0048522;positive regulation of cellular process;0.0133776515603056!GO:0005832;chaperonin-containing T-complex;0.0134352368227104!GO:0006302;double-strand break repair;0.0136602193847349!GO:0031901;early endosome membrane;0.0139659031370558!GO:0006611;protein export from nucleus;0.0139769921297436!GO:0000082;G1/S transition of mitotic cell cycle;0.0141762694471946!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0141762694471946!GO:0015002;heme-copper terminal oxidase activity;0.0141762694471946!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0141762694471946!GO:0004129;cytochrome-c oxidase activity;0.0141762694471946!GO:0000792;heterochromatin;0.0142756731185941!GO:0031543;peptidyl-proline dioxygenase activity;0.0147676265189092!GO:0000209;protein polyubiquitination;0.0148164186813626!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0149646002434618!GO:0016125;sterol metabolic process;0.0149995391519486!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0150553071132324!GO:0000086;G2/M transition of mitotic cell cycle;0.0152033360800225!GO:0007017;microtubule-based process;0.0157287168474405!GO:0030521;androgen receptor signaling pathway;0.0157371081642197!GO:0009116;nucleoside metabolic process;0.0158443826712191!GO:0006892;post-Golgi vesicle-mediated transport;0.0159566616870025!GO:0035258;steroid hormone receptor binding;0.0162611725585367!GO:0000049;tRNA binding;0.0163857790464306!GO:0008022;protein C-terminus binding;0.0168174736337543!GO:0008632;apoptotic program;0.0169622730056987!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.017054228179755!GO:0000428;DNA-directed RNA polymerase complex;0.017054228179755!GO:0006144;purine base metabolic process;0.017405551969809!GO:0046483;heterocycle metabolic process;0.0174202953644404!GO:0031625;ubiquitin protein ligase binding;0.0174987737742099!GO:0006520;amino acid metabolic process;0.0179208257368564!GO:0031529;ruffle organization and biogenesis;0.0179212733741079!GO:0019752;carboxylic acid metabolic process;0.0182007475316158!GO:0051052;regulation of DNA metabolic process;0.0182765743807364!GO:0030145;manganese ion binding;0.018504987133408!GO:0006082;organic acid metabolic process;0.0186282640700953!GO:0000339;RNA cap binding;0.0189344851497744!GO:0006289;nucleotide-excision repair;0.0191069677860769!GO:0032508;DNA duplex unwinding;0.019374630003786!GO:0032392;DNA geometric change;0.019374630003786!GO:0051101;regulation of DNA binding;0.0205032223935712!GO:0003746;translation elongation factor activity;0.0205142035265104!GO:0045936;negative regulation of phosphate metabolic process;0.020681905055378!GO:0006672;ceramide metabolic process;0.0209420710573581!GO:0022890;inorganic cation transmembrane transporter activity;0.0213234859227688!GO:0000118;histone deacetylase complex;0.0213682927499176!GO:0046519;sphingoid metabolic process;0.0224031526327684!GO:0016860;intramolecular oxidoreductase activity;0.0225308216717224!GO:0043492;ATPase activity, coupled to movement of substances;0.0225308216717224!GO:0051539;4 iron, 4 sulfur cluster binding;0.0225308216717224!GO:0051059;NF-kappaB binding;0.0226258611602597!GO:0045941;positive regulation of transcription;0.0232292594809183!GO:0032906;transforming growth factor-beta2 production;0.0238792555694749!GO:0032909;regulation of transforming growth factor-beta2 production;0.0238792555694749!GO:0045792;negative regulation of cell size;0.0238851404307021!GO:0007569;cell aging;0.0239288784804729!GO:0006310;DNA recombination;0.0240098137184954!GO:0006405;RNA export from nucleus;0.0240460599789901!GO:0030032;lamellipodium biogenesis;0.0244593856759333!GO:0040029;regulation of gene expression, epigenetic;0.0248134757251564!GO:0050790;regulation of catalytic activity;0.0248174257122825!GO:0008287;protein serine/threonine phosphatase complex;0.0248174257122825!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0248174257122825!GO:0030308;negative regulation of cell growth;0.0251684327655801!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0254002898812512!GO:0031575;G1/S transition checkpoint;0.0254819101971205!GO:0030384;phosphoinositide metabolic process;0.0255800107309768!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0259094832345134!GO:0005096;GTPase activator activity;0.0260879334284971!GO:0006376;mRNA splice site selection;0.0261935558094039!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0261935558094039!GO:0043624;cellular protein complex disassembly;0.0263648487202977!GO:0007021;tubulin folding;0.0265734494202112!GO:0050662;coenzyme binding;0.0273634849247025!GO:0050811;GABA receptor binding;0.0273761830147039!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0276898197524748!GO:0006284;base-excision repair;0.0281057532945355!GO:0006268;DNA unwinding during replication;0.0283054433808111!GO:0006979;response to oxidative stress;0.0284294534943473!GO:0051098;regulation of binding;0.028453148017823!GO:0009112;nucleobase metabolic process;0.028453148017823!GO:0051272;positive regulation of cell motility;0.0286021003915445!GO:0040017;positive regulation of locomotion;0.0286021003915445!GO:0006779;porphyrin biosynthetic process;0.0286682307728133!GO:0033014;tetrapyrrole biosynthetic process;0.0286682307728133!GO:0006643;membrane lipid metabolic process;0.0287332480379685!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0292066851729577!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0292066851729577!GO:0007266;Rho protein signal transduction;0.0311927417617693!GO:0050750;low-density lipoprotein receptor binding;0.0311927417617693!GO:0032984;macromolecular complex disassembly;0.0317317105067837!GO:0051338;regulation of transferase activity;0.032100613515689!GO:0045334;clathrin-coated endocytic vesicle;0.0322435162593827!GO:0008538;proteasome activator activity;0.0325100314371485!GO:0004860;protein kinase inhibitor activity;0.0329013262794179!GO:0051540;metal cluster binding;0.0331894233110625!GO:0051536;iron-sulfur cluster binding;0.0331894233110625!GO:0005876;spindle microtubule;0.0337860759512427!GO:0043086;negative regulation of catalytic activity;0.0338255322691765!GO:0006007;glucose catabolic process;0.0338799261476547!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0338799261476547!GO:0031970;organelle envelope lumen;0.0340425350738006!GO:0006338;chromatin remodeling;0.0341325871748623!GO:0009081;branched chain family amino acid metabolic process;0.0343279215548269!GO:0050178;phenylpyruvate tautomerase activity;0.0348692123270486!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0348734502556137!GO:0033043;regulation of organelle organization and biogenesis;0.0348734502556137!GO:0043130;ubiquitin binding;0.0358592057896498!GO:0032182;small conjugating protein binding;0.0358592057896498!GO:0006739;NADP metabolic process;0.0361865735944004!GO:0031123;RNA 3'-end processing;0.036249325474143!GO:0030128;clathrin coat of endocytic vesicle;0.0366304405803385!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0366304405803385!GO:0030122;AP-2 adaptor complex;0.0366304405803385!GO:0008097;5S rRNA binding;0.0366304405803385!GO:0006778;porphyrin metabolic process;0.0366304405803385!GO:0033013;tetrapyrrole metabolic process;0.0366304405803385!GO:0005784;translocon complex;0.0369253203919378!GO:0030140;trans-Golgi network transport vesicle;0.0371043169829198!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0373851244516813!GO:0000096;sulfur amino acid metabolic process;0.0379525103347235!GO:0006220;pyrimidine nucleotide metabolic process;0.0380065134813612!GO:0008299;isoprenoid biosynthetic process;0.0388280343823006!GO:0016251;general RNA polymerase II transcription factor activity;0.0390171358794981!GO:0006607;NLS-bearing substrate import into nucleus;0.0397383818921322!GO:0008154;actin polymerization and/or depolymerization;0.0398614394161769!GO:0005856;cytoskeleton;0.0401783089587716!GO:0001952;regulation of cell-matrix adhesion;0.0402453902756679!GO:0043034;costamere;0.0403591920614681!GO:0009303;rRNA transcription;0.0406315449552124!GO:0006733;oxidoreduction coenzyme metabolic process;0.0409299743448405!GO:0051270;regulation of cell motility;0.0414063335352819!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0414063335352819!GO:0030911;TPR domain binding;0.0415006808017546!GO:0030496;midbody;0.0416287401382105!GO:0022415;viral reproductive process;0.0419243367138681!GO:0043495;protein anchor;0.0420065289239397!GO:0006417;regulation of translation;0.0420065289239397!GO:0008637;apoptotic mitochondrial changes;0.0423227488167915!GO:0050681;androgen receptor binding;0.0423730899927001!GO:0031371;ubiquitin conjugating enzyme complex;0.0424272854336367!GO:0048144;fibroblast proliferation;0.0425405857594516!GO:0048145;regulation of fibroblast proliferation;0.0425405857594516!GO:0046966;thyroid hormone receptor binding;0.0425660223357562!GO:0022408;negative regulation of cell-cell adhesion;0.0426052218720982!GO:0006378;mRNA polyadenylation;0.0426641857747218!GO:0007030;Golgi organization and biogenesis;0.0431320888498751!GO:0005669;transcription factor TFIID complex;0.0435043312109097!GO:0007346;regulation of progression through mitotic cell cycle;0.0435043312109097!GO:0046822;regulation of nucleocytoplasmic transport;0.043801267436587!GO:0004177;aminopeptidase activity;0.0441146353116383!GO:0007040;lysosome organization and biogenesis;0.0441146353116383!GO:0046128;purine ribonucleoside metabolic process;0.0445118958650094!GO:0042278;purine nucleoside metabolic process;0.0445118958650094!GO:0016311;dephosphorylation;0.0445118958650094!GO:0030031;cell projection biogenesis;0.0452677332310483!GO:0006518;peptide metabolic process;0.0452677332310483!GO:0008143;poly(A) binding;0.0457016461543421!GO:0043241;protein complex disassembly;0.0457854904074755!GO:0006769;nicotinamide metabolic process;0.046544886733378!GO:0042326;negative regulation of phosphorylation;0.0466364335316048!GO:0030833;regulation of actin filament polymerization;0.0474513663829582!GO:0007033;vacuole organization and biogenesis;0.0475125693837064!GO:0003756;protein disulfide isomerase activity;0.0475125693837064!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0475125693837064!GO:0022406;membrane docking;0.0475125693837064!GO:0048278;vesicle docking;0.0475125693837064!GO:0006275;regulation of DNA replication;0.0477021733574227!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0481166227629993!GO:0004721;phosphoprotein phosphatase activity;0.0481478926005298!GO:0000910;cytokinesis;0.0483133779174831!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0485548590072377!GO:0048146;positive regulation of fibroblast proliferation;0.0488188031967065!GO:0006541;glutamine metabolic process;0.0490834031369575!GO:0043549;regulation of kinase activity;0.0495067001379745!GO:0005758;mitochondrial intermembrane space;0.0495221866310611
 
|sample_id=11323
 
|sample_id=11323
 
|sample_note=
 
|sample_note=
Line 76: Line 105:
 
|sample_tissue=eye
 
|sample_tissue=eye
 
|top_motifs=T:2.04354886063;NKX2-1,4:2.00531233997;ZIC1..3:1.95752617052;PAX1,9:1.78332765409;ZNF384:1.58101068258;SOX17:1.3566777092;CDC5L:1.23596941698;SOX2:1.22158190373;NKX3-1:1.17989473258;EVI1:1.17762827064;ONECUT1,2:1.12225368599;UFEwm:1.12140966271;GFI1:1.12030016714;NR3C1:1.10783604925;HOXA9_MEIS1:1.0458195469;TEAD1:0.9809840428;NANOG:0.974380684572;MZF1:0.960353876975;FOXP1:0.95466847667;TOPORS:0.928299834013;EBF1:0.881609562578;MAZ:0.866559538227;NKX6-1,2:0.823128793641;HOX{A4,D4}:0.804827717811;EGR1..3:0.798179420409;NR6A1:0.757170942316;POU3F1..4:0.736405632669;GFI1B:0.736085079453;ALX1:0.712833026944;HMGA1,2:0.680422675879;NFY{A,B,C}:0.662126991023;ZFP161:0.659885301558;DBP:0.642566558054;SRF:0.640448734499;HSF1,2:0.632480769245;GTF2A1,2:0.631458445725;KLF4:0.618115644159;ALX4:0.594629042018;CDX1,2,4:0.590020303663;LHX3,4:0.58858454871;TFCP2:0.578616629894;TFDP1:0.565327360553;TBX4,5:0.552185964571;NKX2-3_NKX2-5:0.522227715578;STAT1,3:0.521009956187;PAX5:0.518449624033;SP1:0.513715106421;AIRE:0.511017540567;TFAP2{A,C}:0.503925177806;GATA4:0.503050585875;TLX1..3_NFIC{dimer}:0.499086341369;PATZ1:0.49510520105;TFAP4:0.4454890519;IKZF1:0.440283795911;GZF1:0.438153853851;NRF1:0.418851737833;XCPE1{core}:0.407760622206;PAX8:0.403703730173;E2F1..5:0.401582106639;ELK1,4_GABP{A,B1}:0.393915001963;HOX{A5,B5}:0.379949023002;ZBTB6:0.377865516468;GTF2I:0.360820591977;PAX4:0.358641822021;MTE{core}:0.351095732379;POU6F1:0.331698386064;SOX{8,9,10}:0.326981391345;ZNF143:0.324118719693;PRDM1:0.27529592701;RXR{A,B,G}:0.258219337707;ZBTB16:0.234213375037;FOXD3:0.232404145471;HIC1:0.214629191636;TEF:0.211293468525;PBX1:0.204025211933;TFAP2B:0.190860652121;MYBL2:0.183799701088;GLI1..3:0.183382121754;TAL1_TCF{3,4,12}:0.181409148584;ESRRA:0.176317605999;YY1:0.151892927877;NFATC1..3:0.151590092321;HNF4A_NR2F1,2:0.134790986123;POU5F1:0.121427176973;OCT4_SOX2{dimer}:0.119393954335;NFE2L1:0.119246641247;EN1,2:0.116334189093;ADNP_IRX_SIX_ZHX:0.110546404186;ZNF148:0.0857576180134;LEF1_TCF7_TCF7L1,2:0.0736384583636;PITX1..3:0.0661543948574;FOXM1:0.0581553661171;NKX3-2:0.0526889132147;IKZF2:0.0393566177416;NHLH1,2:0.022210270876;RBPJ:0.0177417693562;XBP1:0.0136449404946;RFX1:0.0122125014912;HMX1:0.00942254750912;FOSL2:-0.0164438140794;MYOD1:-0.0172904599741;TP53:-0.040611919639;AHR_ARNT_ARNT2:-0.0631898451043;BACH2:-0.0673333676262;MTF1:-0.0792850358599;SPZ1:-0.103895728054;MYFfamily:-0.111585660378;NANOG{mouse}:-0.112116506559;LMO2:-0.12411823747;NR1H4:-0.13182978016;CRX:-0.138392614142;GCM1,2:-0.141508875317;SMAD1..7,9:-0.161581420107;MYB:-0.175276386858;FOS_FOS{B,L1}_JUN{B,D}:-0.185629427661;HNF1A:-0.187731014356;NKX2-2,8:-0.19206663387;PAX6:-0.197334760053;ARID5B:-0.200525421199;RREB1:-0.205624157019;NFE2L2:-0.206393154565;STAT2,4,6:-0.206676910213;BREu{core}:-0.215140652211;JUN:-0.217042451296;FOXL1:-0.219214519679;RUNX1..3:-0.221872000983;VSX1,2:-0.22739645277;NR5A1,2:-0.238664505705;RXRA_VDR{dimer}:-0.239733580443;POU2F1..3:-0.245023703291;ZEB1:-0.254569354664;REST:-0.258045674538;FOXA2:-0.285419452862;CUX2:-0.294349602504;TLX2:-0.296326046465;POU1F1:-0.299481884132;TBP:-0.308294482254;MED-1{core}:-0.317575395886;SNAI1..3:-0.317898853315;ATF6:-0.318684719996;MEF2{A,B,C,D}:-0.321065612305;FOXN1:-0.368280683408;NFE2:-0.369508307449;TGIF1:-0.380540415954;PRRX1,2:-0.399735965588;CREB1:-0.410424454597;FOXP3:-0.423206057753;NFIX:-0.428489156456;NFKB1_REL_RELA:-0.429045956935;AR:-0.430762239448;HOX{A6,A7,B6,B7}:-0.441646028656;RFX2..5_RFXANK_RFXAP:-0.48095852778;ZNF423:-0.488401496691;ATF4:-0.489604444284;IRF1,2:-0.491910846866;PAX2:-0.495533445124;SOX5:-0.49785056063;HIF1A:-0.499610695936;BPTF:-0.518758768778;ELF1,2,4:-0.540091719778;PAX3,7:-0.554349551569;FOXQ1:-0.56444361503;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.606645414045;SPI1:-0.607038315487;STAT5{A,B}:-0.607845350412;HLF:-0.612886197698;ATF2:-0.62844953028;ESR1:-0.639259428953;FOX{D1,D2}:-0.646035255901;EP300:-0.648386901194;SPIB:-0.664624896862;RORA:-0.676556290285;MAFB:-0.679258222527;FOX{I1,J2}:-0.697222077081;ZNF238:-0.745945652904;ETS1,2:-0.757575632909;IRF7:-0.773420084121;ATF5_CREB3:-0.778225081121;DMAP1_NCOR{1,2}_SMARC:-0.780693605026;GATA6:-0.793580165971;bHLH_family:-0.800280039975;FOXO1,3,4:-0.87627895134;SREBF1,2:-0.884992429057;CEBPA,B_DDIT3:-0.897136962169;PDX1:-0.902941096415;NFIL3:-0.926024545055;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.933111306771;HBP1_HMGB_SSRP1_UBTF:-1.0609360863;HAND1,2:-1.09898919768;FOX{F1,F2,J1}:-1.32327217235;PPARG:-1.42742902664;HES1:-1.6043197772
 
|top_motifs=T:2.04354886063;NKX2-1,4:2.00531233997;ZIC1..3:1.95752617052;PAX1,9:1.78332765409;ZNF384:1.58101068258;SOX17:1.3566777092;CDC5L:1.23596941698;SOX2:1.22158190373;NKX3-1:1.17989473258;EVI1:1.17762827064;ONECUT1,2:1.12225368599;UFEwm:1.12140966271;GFI1:1.12030016714;NR3C1:1.10783604925;HOXA9_MEIS1:1.0458195469;TEAD1:0.9809840428;NANOG:0.974380684572;MZF1:0.960353876975;FOXP1:0.95466847667;TOPORS:0.928299834013;EBF1:0.881609562578;MAZ:0.866559538227;NKX6-1,2:0.823128793641;HOX{A4,D4}:0.804827717811;EGR1..3:0.798179420409;NR6A1:0.757170942316;POU3F1..4:0.736405632669;GFI1B:0.736085079453;ALX1:0.712833026944;HMGA1,2:0.680422675879;NFY{A,B,C}:0.662126991023;ZFP161:0.659885301558;DBP:0.642566558054;SRF:0.640448734499;HSF1,2:0.632480769245;GTF2A1,2:0.631458445725;KLF4:0.618115644159;ALX4:0.594629042018;CDX1,2,4:0.590020303663;LHX3,4:0.58858454871;TFCP2:0.578616629894;TFDP1:0.565327360553;TBX4,5:0.552185964571;NKX2-3_NKX2-5:0.522227715578;STAT1,3:0.521009956187;PAX5:0.518449624033;SP1:0.513715106421;AIRE:0.511017540567;TFAP2{A,C}:0.503925177806;GATA4:0.503050585875;TLX1..3_NFIC{dimer}:0.499086341369;PATZ1:0.49510520105;TFAP4:0.4454890519;IKZF1:0.440283795911;GZF1:0.438153853851;NRF1:0.418851737833;XCPE1{core}:0.407760622206;PAX8:0.403703730173;E2F1..5:0.401582106639;ELK1,4_GABP{A,B1}:0.393915001963;HOX{A5,B5}:0.379949023002;ZBTB6:0.377865516468;GTF2I:0.360820591977;PAX4:0.358641822021;MTE{core}:0.351095732379;POU6F1:0.331698386064;SOX{8,9,10}:0.326981391345;ZNF143:0.324118719693;PRDM1:0.27529592701;RXR{A,B,G}:0.258219337707;ZBTB16:0.234213375037;FOXD3:0.232404145471;HIC1:0.214629191636;TEF:0.211293468525;PBX1:0.204025211933;TFAP2B:0.190860652121;MYBL2:0.183799701088;GLI1..3:0.183382121754;TAL1_TCF{3,4,12}:0.181409148584;ESRRA:0.176317605999;YY1:0.151892927877;NFATC1..3:0.151590092321;HNF4A_NR2F1,2:0.134790986123;POU5F1:0.121427176973;OCT4_SOX2{dimer}:0.119393954335;NFE2L1:0.119246641247;EN1,2:0.116334189093;ADNP_IRX_SIX_ZHX:0.110546404186;ZNF148:0.0857576180134;LEF1_TCF7_TCF7L1,2:0.0736384583636;PITX1..3:0.0661543948574;FOXM1:0.0581553661171;NKX3-2:0.0526889132147;IKZF2:0.0393566177416;NHLH1,2:0.022210270876;RBPJ:0.0177417693562;XBP1:0.0136449404946;RFX1:0.0122125014912;HMX1:0.00942254750912;FOSL2:-0.0164438140794;MYOD1:-0.0172904599741;TP53:-0.040611919639;AHR_ARNT_ARNT2:-0.0631898451043;BACH2:-0.0673333676262;MTF1:-0.0792850358599;SPZ1:-0.103895728054;MYFfamily:-0.111585660378;NANOG{mouse}:-0.112116506559;LMO2:-0.12411823747;NR1H4:-0.13182978016;CRX:-0.138392614142;GCM1,2:-0.141508875317;SMAD1..7,9:-0.161581420107;MYB:-0.175276386858;FOS_FOS{B,L1}_JUN{B,D}:-0.185629427661;HNF1A:-0.187731014356;NKX2-2,8:-0.19206663387;PAX6:-0.197334760053;ARID5B:-0.200525421199;RREB1:-0.205624157019;NFE2L2:-0.206393154565;STAT2,4,6:-0.206676910213;BREu{core}:-0.215140652211;JUN:-0.217042451296;FOXL1:-0.219214519679;RUNX1..3:-0.221872000983;VSX1,2:-0.22739645277;NR5A1,2:-0.238664505705;RXRA_VDR{dimer}:-0.239733580443;POU2F1..3:-0.245023703291;ZEB1:-0.254569354664;REST:-0.258045674538;FOXA2:-0.285419452862;CUX2:-0.294349602504;TLX2:-0.296326046465;POU1F1:-0.299481884132;TBP:-0.308294482254;MED-1{core}:-0.317575395886;SNAI1..3:-0.317898853315;ATF6:-0.318684719996;MEF2{A,B,C,D}:-0.321065612305;FOXN1:-0.368280683408;NFE2:-0.369508307449;TGIF1:-0.380540415954;PRRX1,2:-0.399735965588;CREB1:-0.410424454597;FOXP3:-0.423206057753;NFIX:-0.428489156456;NFKB1_REL_RELA:-0.429045956935;AR:-0.430762239448;HOX{A6,A7,B6,B7}:-0.441646028656;RFX2..5_RFXANK_RFXAP:-0.48095852778;ZNF423:-0.488401496691;ATF4:-0.489604444284;IRF1,2:-0.491910846866;PAX2:-0.495533445124;SOX5:-0.49785056063;HIF1A:-0.499610695936;BPTF:-0.518758768778;ELF1,2,4:-0.540091719778;PAX3,7:-0.554349551569;FOXQ1:-0.56444361503;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.606645414045;SPI1:-0.607038315487;STAT5{A,B}:-0.607845350412;HLF:-0.612886197698;ATF2:-0.62844953028;ESR1:-0.639259428953;FOX{D1,D2}:-0.646035255901;EP300:-0.648386901194;SPIB:-0.664624896862;RORA:-0.676556290285;MAFB:-0.679258222527;FOX{I1,J2}:-0.697222077081;ZNF238:-0.745945652904;ETS1,2:-0.757575632909;IRF7:-0.773420084121;ATF5_CREB3:-0.778225081121;DMAP1_NCOR{1,2}_SMARC:-0.780693605026;GATA6:-0.793580165971;bHLH_family:-0.800280039975;FOXO1,3,4:-0.87627895134;SREBF1,2:-0.884992429057;CEBPA,B_DDIT3:-0.897136962169;PDX1:-0.902941096415;NFIL3:-0.926024545055;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.933111306771;HBP1_HMGB_SSRP1_UBTF:-1.0609360863;HAND1,2:-1.09898919768;FOX{F1,F2,J1}:-1.32327217235;PPARG:-1.42742902664;HES1:-1.6043197772
 +
|xref=
 +
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11323-117D9;search_select_hide=table117:FF:11323-117D9
 
}}
 
}}

Latest revision as of 08:52, 4 June 2020

Name:Ciliary Epithelial Cells, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11966
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueeye
dev stagefetus
sexunknown
agefetal
cell typeciliated epithelial cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number564
catalog numberSC6585
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005764
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11966 CAGE DRX008207 DRR009079
Accession ID Hg19

Library idBAMCTSS
CNhs11966 DRZ000504 DRZ001889
Accession ID Hg38

Library idBAMCTSS
CNhs11966 DRZ011854 DRZ013239
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005764
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10013.CTTGTA sRNA-Seq DRX037213 DRR041579
Accession ID Hg19

Library idBAMCTSS
SRhi10013.CTTGTA DRZ007221


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
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C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11966

Jaspar motif P-value
MA0002.2 0.0131
MA0003.1 0.0331
MA0004.1 0.052
MA0006.1 0.342
MA0007.1 0.604
MA0009.1 0.147
MA0014.1 0.197
MA0017.1 0.0127
MA0018.2 0.0439
MA0019.1 0.843
MA0024.1 0.127
MA0025.1 0.138
MA0027.1 0.9
MA0028.1 0.587
MA0029.1 0.445
MA0030.1 8.68829e-4
MA0031.1 5.15352e-5
MA0035.2 0.0388
MA0038.1 0.101
MA0039.2 0.418
MA0040.1 0.405
MA0041.1 0.198
MA0042.1 0.255
MA0043.1 0.0163
MA0046.1 0.73
MA0047.2 4.41231e-5
MA0048.1 0.0833
MA0050.1 3.99191e-4
MA0051.1 0.0127
MA0052.1 0.0122
MA0055.1 0.662
MA0057.1 0.672
MA0058.1 0.0104
MA0059.1 0.0507
MA0060.1 2.22669e-4
MA0061.1 1.94578e-4
MA0062.2 0.0399
MA0065.2 0.00444
MA0066.1 0.29
MA0067.1 0.00516
MA0068.1 0.0264
MA0069.1 0.622
MA0070.1 0.811
MA0071.1 0.314
MA0072.1 0.509
MA0073.1 0.99
MA0074.1 0.427
MA0076.1 0.965
MA0077.1 0.139
MA0078.1 0.563
MA0079.2 0.465
MA0080.2 2.2974e-13
MA0081.1 0.0363
MA0083.1 0.0121
MA0084.1 0.317
MA0087.1 0.266
MA0088.1 0.113
MA0090.1 0.0163
MA0091.1 0.163
MA0092.1 0.274
MA0093.1 0.0691
MA0099.2 2.88005e-5
MA0100.1 0.927
MA0101.1 0.0123
MA0102.2 2.72545e-4
MA0103.1 0.118
MA0104.2 0.00629
MA0105.1 2.667e-6
MA0106.1 0.961
MA0107.1 1.46473e-4
MA0108.2 0.775
MA0111.1 0.587
MA0112.2 2.93011e-4
MA0113.1 0.0673
MA0114.1 0.032
MA0115.1 0.632
MA0116.1 1.77111e-5
MA0117.1 0.575
MA0119.1 0.771
MA0122.1 0.974
MA0124.1 0.503
MA0125.1 0.412
MA0131.1 0.912
MA0135.1 0.623
MA0136.1 7.8711e-17
MA0137.2 0.153
MA0138.2 0.166
MA0139.1 0.537
MA0140.1 0.012
MA0141.1 0.123
MA0142.1 0.166
MA0143.1 0.374
MA0144.1 0.159
MA0145.1 0.458
MA0146.1 0.196
MA0147.1 0.0351
MA0148.1 5.93989e-4
MA0149.1 0.0905
MA0150.1 2.41884e-5
MA0152.1 0.269
MA0153.1 0.753
MA0154.1 0.00243
MA0155.1 0.51
MA0156.1 1.84549e-9
MA0157.1 0.00728
MA0159.1 0.0204
MA0160.1 0.0239
MA0162.1 0.622
MA0163.1 1.09749e-6
MA0164.1 0.777
MA0258.1 0.00549
MA0259.1 0.223



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11966

Novel motif P-value
1 0.109
10 0.229
100 0.637
101 0.498
102 0.477
103 0.165
104 0.656
105 0.0522
106 0.0419
107 0.705
108 0.888
109 0.108
11 0.114
110 0.704
111 0.00601
112 0.039
113 0.166
114 0.115
115 0.0361
116 0.779
117 0.28
118 0.46
119 0.621
12 0.193
120 0.925
121 0.961
122 0.33
123 0.0816
124 0.236
125 0.82
126 0.101
127 0.158
128 0.36
129 0.335
13 0.552
130 0.492
131 0.693
132 0.89
133 0.904
134 0.55
135 0.0395
136 0.24
137 0.0594
138 0.24
139 0.0577
14 0.615
140 0.164
141 0.255
142 0.98
143 0.0892
144 0.771
145 0.728
146 0.591
147 0.539
148 0.0382
149 0.234
15 0.116
150 0.731
151 0.212
152 0.182
153 0.326
154 0.558
155 0.012
156 0.132
157 0.378
158 0.00554
159 0.544
16 0.71
160 0.265
161 0.66
162 0.226
163 0.437
164 0.286
165 0.883
166 0.0398
167 0.946
168 0.719
169 0.00845
17 0.215
18 0.0945
19 0.498
2 0.422
20 0.922
21 0.769
22 0.154
23 0.153
24 0.334
25 0.253
26 0.427
27 0.27
28 0.919
29 0.212
3 0.237
30 0.895
31 0.748
32 0.302
33 0.445
34 0.526
35 0.318
36 0.0252
37 0.206
38 0.119
39 0.423
4 0.494
40 0.071
41 0.034
42 0.319
43 0.0794
44 0.925
45 0.428
46 0.105
47 0.378
48 0.337
49 0.048
5 0.123
50 0.716
51 0.502
52 0.438
53 0.37
54 0.515
55 0.989
56 0.498
57 0.611
58 0.0756
59 0.292
6 0.644
60 0.0376
61 0.169
62 0.0704
63 0.235
64 0.204
65 0.134
66 0.848
67 0.832
68 0.489
69 0.767
7 0.29
70 0.0924
71 0.144
72 0.103
73 0.128
74 0.64
75 0.0293
76 0.197
77 0.261
78 0.718
79 0.536
8 0.563
80 0.105
81 0.483
82 0.0919
83 0.579
84 0.27
85 0.0489
86 0.165
87 0.799
88 0.743
89 0.575
9 0.261
90 0.516
91 0.856
92 0.201
93 0.0062
94 0.145
95 0.0203
96 0.0499
97 0.782
98 0.0547
99 0.156



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs11966


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000064 (ciliated cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000710 (neurecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000067 (ciliated epithelial cell)
0005012 (multi-ciliated epithelial cell)
0002304 (non-pigmented ciliary epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000970 (eye)
0000019 (camera-type eye)
0000483 (epithelium)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000020 (sense organ)
0010371 (ecto-epithelium)
0002203 (vasculature of eye)
0001768 (uvea)
0000488 (atypical epithelium)
0007625 (pigment epithelium of eye)
0001032 (sensory system)
0002049 (vasculature)
0002200 (vasculature of head)
0006876 (vasculature of organ)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001778 (ciliary epithelium)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0004535 (cardiovascular system)
0002104 (visual system)
0001801 (anterior segment of eyeball)
0004456 (entire sense organ system)
0001456 (face)
0001775 (ciliary body)
0010230 (eyeball of camera-type eye)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000040 (human ciliary epithelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)