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{{f5samples
 
{{f5samples
|id=FF:11328-117E5
+
|DRA_sample_Accession=CAGE@SAMD00005471
|name=Preadipocyte - breast, donor2
+
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005471
|sample_id=11328
+
|accession_numbers=CAGE;DRX008408;DRR009280;DRZ000705;DRZ002090;DRZ012055;DRZ013440
|rna_tube_id=117E5
+
|accession_numbers_RNASeq=sRNA-Seq;DRX037107;DRR041473;DRZ007115
|rna_box=117
+
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000310,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0009569,UBERON:0001443,UBERON:0000915
|rna_position=E5
+
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002334,CL:0002580
|sample_cell_lot=lot:BR20399B
 
|sample_cell_catalog=F-BR-F
 
|sample_company=Zenbio
 
|rna_lot_number=
 
|rna_catalog_number=N/A
 
|sample_species=Human (Homo sapiens)
 
|sample_strain=
 
|sample_dev_stage=40 years old adult
 
|sample_tissue=breast
 
|sample_donor(cell lot)=
 
|sample_sex=female
 
|sample_age=40
 
|sample_ethnicity=C
 
|rna_rin=
 
|rna_od260/230=1.6
 
|rna_od260/280=2.09
 
|sample_cell_type=preadipocyte
 
|sample_cell_line=
 
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
 
|sample_experimental_condition=
 
|sample_disease=
 
|rna_sample_type=total RNA
 
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
 
|rna_weight_ug=16.8
 
|rna_concentration=0.671
 
|sample_note=
 
|profile_hcage=CNhs11971,LSID836,release011,COMPLETED
 
|profile_cagescan=,,,
 
|profile_srnaseq=SRhi10007,,,
 
|profile_rnaseq=,,,
 
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002334,CL:0002371,CL:0002580
 
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000310,UBERON:0000465,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000915,UBERON:0001062,UBERON:0001443,UBERON:0002384,UBERON:0005482
 
 
|ancestors_in_disease_facet=
 
|ancestors_in_disease_facet=
|sample_description=
+
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000137,FF:0000139
 +
|comment=
 +
|created_by=
 +
|creation_date=
 +
|data_phase=2
 +
|datafreeze_phase=2
 +
|def=
 +
|expression_enrichment_score=chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.96!89.81!HOXC5;;chr12:54402745..54402788,+!p1@HOXC8!1.77!57.82!HOXC8;;chr1:170632285..170632309,+!p1@PRRX1!1.70!55.57!PRRX1;;chr9:132427972..132428056,+!p1@PRRX2!1.63!53.61!PRRX2;;chr9:132427883..132427951,+!p2@PRRX2!1.63!41.82!PRRX2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.59!37.89!ZBED1;;chr2:119605214..119605230,-!p1@EN1!1.43!25.82!EN1;;chr19:47523058..47523114,+!p1@NPAS1!1.43!25.82!NPAS1;;chr11:46299199..46299233,+!p1@CREB3L1!1.33!102.16!CREB3L1;;chr7:19157248..19157268,-!p1@TWIST1!1.32!54.17!TWIST1;;chr2:239756671..239756732,+!p1@TWIST2!1.27!55.29!TWIST2;;chr1:170633348..170633399,+!p2@PRRX1!1.26!23.29!PRRX1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.26!17.40!HOXC5;;chr1:170633262..170633285,+!p3@PRRX1!1.24!18.52!PRRX1;;chr4:4861385..4861398,+!p1@MSX1!1.23!47.43!MSX1;;chr11:46299539..46299620,+!p2@CREB3L1!1.22!26.38!CREB3L1;;chr12:54402790..54402805,+!p2@HOXC8!1.22!15.44!HOXC8;;chr4:111558135..111558198,-!p2@PITX2!1.22!15.44!PITX2;;chr4:174450089..174450153,-!p2@HAND2!1.22!15.44!HAND2;;chr1:23885981..23886002,-!p1@ID3!1.20!2510.79!ID3;;chrX:106960180..106960197,-!p2@TSC22D3!1.20!56.41!TSC22D3;;chr12:54402729..54402743,+!p3@HOXC8!1.19!14.59!HOXC8;;chr2:239756739..239756755,+!p2@TWIST2!1.18!24.14!TWIST2;;chr1:170632959..170632987,+!p4@PRRX1!1.13!13.75!PRRX1;;chr10:131762504..131762555,-!p1@EBF3!1.13!12.35!EBF3;;chr2:19558373..19558392,-!p1@OSR1!1.12!33.68!OSR1;;chr2:119604456..119604501,-!p2@EN1!1.10!11.51!EN1;;chr5:72744594..72744609,-!p1@FOXD1!1.09!52.48!FOXD1;;chr18:53068911..53068935,-!p4@TCF4!1.08!12.63!TCF4;;chr4:174451370..174451387,-!p1@HAND2!1.06!10.38!HAND2;;chr19:50432453..50432468,+!p1@ATF5!1.03!547.29!ATF5;;chr14:62162258..62162269,+!p2@HIF1A!1.02!92.90!HIF1A;;chr12:54394309..54394336,+!p2@HOXC9!1.01!9.26!HOXC9;;chr1:170632477..170632506,+!p6@PRRX1!1.01!9.26!PRRX1;;chr4:111544219..111544240,-!p1@PITX2!1.00!8.98!PITX2;;chr14:95236440..95236465,-!p1@GSC!1.00!8.98!GSC;;chr14:62162285..62162296,+!p3@HIF1A!0.99!46.31!HIF1A;;chr12:54393880..54393962,+!p1@HOXC9!0.99!8.70!HOXC9;;chr7:27205136..27205164,-!p1@HOXA9!0.99!8.70!HOXA9;;chr2:8822176..8822196,+!p1@ID2!0.97!1193.09!ID2;;chr5:158526917..158526932,-!p1@EBF1!0.97!21.33!EBF1;;chr12:54410948..54410992,+!p3@HOXC5!0.97!8.42!HOXC5;;chr2:85980951..85981004,+!p1@ATOH8!0.96!13.47!ATOH8;;chr17:46687959..46688007,-!p2@HOXB7!0.96!11.23!HOXB7;;chr8:49833948..49833973,-!p2@SNAI2!0.95!51.92!SNAI2;;chr8:72756667..72756736,-!p2@MSC!0.95!12.63!MSC;;chr17:46682321..46682362,-!p1@HOXB6!0.95!7.86!HOXB6;;chr11:12696071..12696086,+!p3@TEAD1!0.94!10.38!TEAD1;;chr2:176994408..176994492,+!p1@HOXD8!0.93!7.58!HOXD8;;chr12:80085061..80085119,-!p6@PAWR!0.92!11.79!PAWR;;chr10:119303078..119303169,+!p2@EMX2!0.92!7.30!EMX2;;chr16:31076332..31076388,-!p3@ZNF668!0.92!7.30!ZNF668;;chr1:170632683..170632696,+!p12@PRRX1!0.92!7.30!PRRX1;;chr7:44143925..44143970,+!p1@AEBP1!0.91!165.87!AEBP1;;chr3:157823517..157823562,-!p1@SHOX2!0.90!7.58!SHOX2;;chr1:170632439..170632465,+!p11@PRRX1!0.90!7.02!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.90!7.02!PRRX1;;chr6:19837592..19837621,+!p1@ID4!0.89!42.94!ID4;;chr14:62203595..62203676,+!p4@HIF1A!0.89!12.91!HIF1A;;chr7:44143978..44143989,+!p2@AEBP1!0.89!12.63!AEBP1;;chr10:77161504..77161530,-!p1@ZNF503!0.88!92.06!ZNF503;;chr5:72744445..72744466,-!p2@FOXD1!0.87!10.95!FOXD1;;chr19:50435736..50435781,+!p3@ATF5!0.87!8.98!ATF5;;chr7:27205106..27205134,-!p2@HOXA9!0.87!6.46!HOXA9;;chr14:62213827..62213853,+!p6@HIF1A!0.86!8.98!HIF1A;;chr1:170632250..170632277,+!p7@PRRX1!0.86!6.17!PRRX1;;chr7:27192185..27192209,-!p1@HOXA3!0.86!6.17!HOXA3;;chr14:95236551..95236576,-!p2@GSC!0.86!6.17!GSC;;chr6:144329384..144329405,-!p1@PLAGL1!0.85!75.22!PLAGL1;;chr10:77161650..77161661,-!p4@ZNF503!0.85!8.70!ZNF503;;chrX:106960221..106960236,-!p3@TSC22D3!0.84!17.40!TSC22D3;;chr5:2751762..2751784,-!p1@IRX2!0.84!5.89!IRX2;;chr8:49833978..49833996,-!p1@SNAI2!0.82!123.77!SNAI2;;chr10:63809013..63809041,+!p3@ARID5B!0.82!33.40!ARID5B;;chr8:72756267..72756296,-!p4@MSC!0.82!8.42!MSC;;chr5:72743793..72743855,-!p4@FOXD1!0.82!6.74!FOXD1;;chr19:13134457..13134462,+!p5@NFIX!0.81!10.10!NFIX;;chr7:44143997..44144008,+!p3@AEBP1!0.81!7.02!AEBP1;;chr8:72756213..72756243,-!p5@MSC!0.80!7.02!MSC;;chr11:46333934..46333963,+!p5@CREB3L1!0.80!5.33!CREB3L1;;chr12:54447686..54447704,+!p5@HOXC4!0.80!5.33!HOXC4;;chr7:19157043..19157088,-!p2@TWIST1!0.79!13.75!TWIST1;;chr14:62203749..62203798,+!p5@HIF1A!0.79!8.42!HIF1A;;chr14:75894714..75894733,+!p1@JDP2!0.78!154.36!JDP2;;chr17:1959369..1959388,+!p2@HIC1!0.78!14.31!HIC1;;chr1:170632723..170632739,+!p8@PRRX1!0.78!5.05!PRRX1;;chr1:200379104..200379128,-!p2@ZNF281!0.77!12.63!ZNF281;;chr19:47922750..47922795,-!p1@MEIS3!0.77!8.42!MEIS3;;chr2:85980919..85980942,+!p4@ATOH8!0.77!5.33!ATOH8;;chr8:72756063..72756125,-!p1@MSC!0.76!10.10!MSC;;chr1:119530706..119530736,-!p3@TBX15!0.76!4.77!TBX15;;chr1:170632137..170632172,+!p10@PRRX1!0.76!4.77!PRRX1;;chr10:28034739..28034756,-!p1@MKX!0.76!4.77!MKX;;chr12:54422217..54422239,+!p3@HOXC6!0.76!4.77!HOXC6;;chr13:37494275..37494304,-!p2@SMAD9!0.76!4.77!SMAD9;;chr20:30193083..30193098,+!p1@ID1!0.75!413.13!ID1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.74!353.91!TAX1BP3;;chr17:46688334..46688385,-!p1@HOXB7!0.74!6.74!HOXB7;;chr20:30433396..30433414,-!p1@FOXS1!0.74!4.49!FOXS1;;chr17:46621937..46621966,-!p2@HOXB2!0.73!12.91!HOXB2;;chr17:38498594..38498661,+!p2@RARA!0.72!15.72!RARA;;chr5:139492456..139492489,+!p7@PURA!0.72!4.21!PURA;;chr10:119302645..119302712,+!p3@EMX2!0.72!4.21!EMX2;;chr2:121493425..121493474,+!p1@GLI2!0.71!9.82!GLI2;;chr19:13134772..13134822,+!p2@NFIX!0.71!6.46!NFIX;;chr16:54964740..54964789,+!p1@IRX5!0.71!6.17!IRX5;;chr8:72756637..72756664,-!p3@MSC!0.71!4.77!MSC;;chr19:13136241..13136258,+!p7@NFIX!0.70!5.61!NFIX;;chr19:13106214..13106382,+!p1@NFIX!0.69!103.56!NFIX;;chr2:85981027..85981047,+!p8@ATOH8!0.69!3.93!ATOH8;;chr2:85981073..85981091,+!p5@ATOH8!0.69!3.93!ATOH8;;chr12:54394416..54394467,+!p5@HOXC9!0.69!3.93!HOXC9;;chr12:54447637..54447659,+!p4@HOXC4!0.69!3.93!HOXC4;;chr12:80085120..80085156,-!p14@PAWR!0.69!3.93!PAWR;;chr8:25902876..25902936,-!p1@EBF2!0.69!3.93!EBF2;;chr8:40755333..40755352,-!p1@ZMAT4!0.69!3.93!ZMAT4;;chr13:45151259..45151326,-!p2@TSC22D1!0.68!25.82!TSC22D1;;chr6:85474299..85474324,-!p1@TBX18!0.68!7.30!TBX18;;chr2:85981222..85981259,+!p2@ATOH8!0.68!6.74!ATOH8;;chr18:19749541..19749557,+!p1@GATA6!0.67!12.91!GATA6;;chr15:96874145..96874166,+!p7@NR2F2!0.67!7.58!NR2F2;;chr2:121493492..121493537,+!p2@GLI2!0.67!6.46!GLI2;;chr2:223163706..223163730,-!p1@PAX3!0.67!3.65!PAX3;;chr7:1577899..1577943,+!p3@MAFK!0.67!3.65!MAFK;;chr7:27196267..27196311,-!p1@HOXA7!0.67!3.65!HOXA7;;chr11:46333979..46333991,+!p7@CREB3L1!0.67!3.65!CREB3L1;;chr14:62213758..62213774,+!p8@HIF1A!0.66!4.77!HIF1A;;chr14:62162224..62162254,+!p1@HIF1A!0.65!587.42!HIF1A;;chr10:63809106..63809127,+!p1@ARID5B!0.64!54.17!ARID5B;;chr10:63809077..63809089,+!p5@ARID5B!0.64!8.14!ARID5B;;chr12:114843940..114843955,-!p2@TBX5!0.64!3.37!TBX5;;chr14:62214151..62214164,+!p11@HIF1A!0.64!3.37!HIF1A;;chr2:85980868..85980880,+!p12@ATOH8!0.64!3.37!ATOH8;;chr17:46132044..46132080,+!p4@NFE2L1!0.64!3.37!NFE2L1;;chr7:27183291..27183324,-!p1@HOXA5!0.64!3.37!HOXA5;;chr7:27196217..27196246,-!p2@HOXA7!0.64!3.37!HOXA7;;chr7:96654133..96654150,-!p1@DLX5!0.64!3.37!DLX5;;chr1:170632310..170632321,+!p15@PRRX1!0.64!3.37!PRRX1;;chr1:170632762..170632786,+!p13@PRRX1!0.64!3.37!PRRX1;;chr14:61116183..61116208,-!p1@SIX1!0.62!14.03!SIX1;;chr10:77161133..77161176,-!p3@ZNF503!0.62!7.58!ZNF503;;chr12:48298765..48298783,-!p2@VDR!0.62!7.30!VDR;;chrX:106960285..106960299,-!p1@TSC22D3!0.61!100.76!TSC22D3;;chr10:114710244..114710257,+!p3@TCF7L2!0.61!9.54!TCF7L2;;chr18:19749386..19749404,+!p2@GATA6!0.61!4.77!GATA6;;chr19:13135582..13135600,+!p3@NFIX!0.61!3.09!NFIX;;chr1:119530636..119530653,-!p2@TBX15!0.61!3.09!TBX15;;chr17:3571887..3571918,-!p2@TAX1BP3!0.60!40.70!TAX1BP3;;chr19:45908292..45908374,-!p1@PPP1R13L!0.59!31.43!PPP1R13L;;chr6:21597765..21597779,+!p2@SOX4!0.59!28.63!SOX4;;chr10:63853436..63853442,+!p4@ARID5B!0.59!18.52!ARID5B;;chr5:321810..321877,+!p1@AHRR!0.59!10.67!AHRR;;chr15:57511609..57511651,+!p2@TCF12!0.59!5.33!TCF12;;chrX:106960249..106960260,-!p5@TSC22D3!0.59!5.05!TSC22D3;;chr7:28220198..28220269,-!p2@JAZF1!0.58!30.87!JAZF1;;chr1:8934931..8934947,-!p4@ENO1!0.58!10.95!ENO1;;chr6:144289132..144289134,-!p3@PLAGL1!0.58!7.58!PLAGL1;;chr3:24536253..24536328,-!p1@THRB!0.58!5.89!THRB;;chr2:119605253..119605264,-!p5@EN1!0.58!2.81!EN1;;chr2:119605374..119605377,-!p7@EN1!0.58!2.81!EN1;;chr2:176987441..176987454,+!p1@HOXD9!0.58!2.81!HOXD9;;chr2:85980903..85980914,+!p11@ATOH8!0.58!2.81!ATOH8;;chr2:85981008..85981025,+!p7@ATOH8!0.58!2.81!ATOH8;;chr5:158527104..158527135,-!p4@EBF1!0.58!2.81!EBF1;;chr7:15726296..15726315,-!p1@MEOX2!0.58!2.81!MEOX2;;chr7:96654026..96654061,-!p2@DLX5!0.58!2.81!DLX5;;chr1:170632647..170632659,+!p17@PRRX1!0.58!2.81!PRRX1;;chr10:119302508..119302559,+!p5@EMX2!0.58!2.81!EMX2;;chr10:28032421..28032494,-!p2@MKX!0.58!2.81!MKX;;chr13:37494248..37494260,-!p3@SMAD9!0.58!2.81!SMAD9;;chr13:37494306..37494324,-!p4@SMAD9!0.58!2.81!SMAD9;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.57!33.12!GLIS2;;chr3:150126759..150126784,+!p2@TSC22D2!0.57!14.87!TSC22D2;;chr17:46622070..46622109,-!p1@HOXB2!0.57!7.02!HOXB2;;chr5:139487608..139487663,+!p3@PURA!0.57!6.74!PURA;;chr12:80083544..80083558,-!p13@PAWR!0.57!3.65!PAWR;;chr3:178789522..178789564,-!p2@ZMAT3!0.56!24.14!ZMAT3;;chr7:150945754..150945789,-!p2@SMARCD3!0.56!9.54!SMARCD3;;chr13:45151403..45151433,-!p5@TSC22D1!0.56!6.74!TSC22D1;;chr19:44037546..44037594,+!p1@ZNF575!0.56!6.17!ZNF575;;chr8:77593474..77593612,+!p1@ZFHX4!0.55!13.19!ZFHX4;;chr14:62193465..62193490,+!p7@HIF1A!0.55!3.93!HIF1A;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.55!2.81!GLIS1;;chr19:47910182..47910187,-!p3@MEIS3!0.55!2.53!MEIS3;;chr1:170633245..170633256,+!p14@PRRX1!0.55!2.53!PRRX1;;chr11:46299443..46299459,+!p4@CREB3L1!0.55!2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 +
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002334;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002580;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000310
 +
|ffid_belonging_in_development=CL:0000134
 
|fonse_cell_line=
 
|fonse_cell_line=
 
|fonse_cell_line_closure=
 
|fonse_cell_line_closure=
Line 66: Line 43:
 
|fonse_treatment=
 
|fonse_treatment=
 
|fonse_treatment_closure=
 
|fonse_treatment_closure=
|top_motifs=
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|has_quality=
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|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor2.CNhs11971.11328-117E5.hg19.nobarcode.bam
 +
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor2.CNhs11971.11328-117E5.hg19.ctss.bed.gz
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|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor2.CNhs11971.11328-117E5.hg19.nobarcode.rdna.fa.gz
 +
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor2.CNhs11971.11328-117E5.hg38.nobarcode.bam
 +
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor2.CNhs11971.11328-117E5.hg38.nobarcode.ctss.bed.gz
 +
|id=FF:11328-117E5
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|is_a=EFO:0002091;;FF:0000139
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|is_obsolete=
 +
|library_id=CNhs11971
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|library_id_phase_based=2:CNhs11971
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|microRNAs=
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|microRNAs_nn=
 +
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11328
 +
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10007.CGTACG.11328
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|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11328
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|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10007.CGTACG.11328
 +
|name=Preadipocyte - breast, donor2
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|namespace=FANTOM5
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|profile_cagescan=,,,
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|profile_hcage=CNhs11971,LSID836,release011,COMPLETED
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|refex=http://refex.dbcls.jp/genelist.php?lang
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 +
|rna_box=117
 +
|rna_catalog_number=N/A
 +
|rna_concentration=0.671
 +
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
 +
|rna_lot_number=
 +
|rna_od260/230=1.6
 +
|rna_od260/280=2.09
 +
|rna_position=E5
 +
|rna_rin=
 +
|rna_sample_type=total RNA
 +
|rna_tube_id=1.17E+07
 +
|rna_weight_ug=16.8
 +
|rnaseq_library_id=SRhi10007.CGTACG
 +
|sample_age=40
 +
|sample_category=primary cells
 +
|sample_cell_catalog=F-BR-F
 +
|sample_cell_line=
 +
|sample_cell_lot=lot:BR20399B
 +
|sample_cell_type=preadipocyte
 +
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
 +
|sample_company=Zenbio
 +
|sample_description=
 +
|sample_dev_stage=40 years old adult
 +
|sample_disease=
 +
|sample_donor(cell lot)=
 +
|sample_ethnicity=C
 +
|sample_experimental_condition=
 +
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;8.16239334963332e-215!GO:0005737;cytoplasm;3.04735645925981e-177!GO:0043226;organelle;3.03088981021559e-154!GO:0043231;intracellular membrane-bound organelle;3.03088981021559e-154!GO:0043227;membrane-bound organelle;4.49049223489131e-154!GO:0043229;intracellular organelle;6.4056542099553e-154!GO:0044444;cytoplasmic part;6.10198861959894e-139!GO:0044422;organelle part;7.78136480802028e-111!GO:0044446;intracellular organelle part;1.97208003429109e-109!GO:0032991;macromolecular complex;1.41160434426598e-75!GO:0005515;protein binding;2.81115241916045e-73!GO:0044237;cellular metabolic process;6.43299872833836e-72!GO:0044238;primary metabolic process;6.46323161404153e-72!GO:0030529;ribonucleoprotein complex;9.22315930529457e-70!GO:0043170;macromolecule metabolic process;1.86476282547399e-64!GO:0005739;mitochondrion;3.55876543005857e-61!GO:0043233;organelle lumen;3.92633138256687e-57!GO:0031974;membrane-enclosed lumen;3.92633138256687e-57!GO:0031090;organelle membrane;4.36331266196742e-52!GO:0003723;RNA binding;1.3912781591154e-49!GO:0044428;nuclear part;4.85496700985652e-49!GO:0019538;protein metabolic process;1.16902903614968e-46!GO:0005840;ribosome;3.88649561273051e-45!GO:0005634;nucleus;3.18772871355428e-44!GO:0006412;translation;2.7770039467962e-42!GO:0044260;cellular macromolecule metabolic process;8.48089694737266e-42!GO:0015031;protein transport;3.63469430394786e-41!GO:0044429;mitochondrial part;6.53170639778433e-41!GO:0044267;cellular protein metabolic process;8.37695969609808e-41!GO:0016043;cellular component organization and biogenesis;1.15085007699484e-40!GO:0003735;structural constituent of ribosome;3.48768407747934e-40!GO:0009058;biosynthetic process;1.04073037507224e-39!GO:0033036;macromolecule localization;1.11142106915826e-39!GO:0045184;establishment of protein localization;4.52017160035473e-38!GO:0008104;protein localization;1.73419314417027e-37!GO:0043234;protein complex;3.76862751098193e-37!GO:0009059;macromolecule biosynthetic process;1.02034733955704e-35!GO:0005829;cytosol;1.64251852939379e-35!GO:0031967;organelle envelope;2.81893924242068e-35!GO:0031975;envelope;4.46819514877834e-35!GO:0044249;cellular biosynthetic process;4.67948147090236e-35!GO:0006396;RNA processing;1.60619213092697e-34!GO:0033279;ribosomal subunit;3.32072845764352e-34!GO:0046907;intracellular transport;2.29847884329273e-32!GO:0031981;nuclear lumen;1.84009664919889e-31!GO:0043283;biopolymer metabolic process;6.13696378901856e-31!GO:0010467;gene expression;2.24817118271882e-29!GO:0005740;mitochondrial envelope;1.74953870472172e-28!GO:0016071;mRNA metabolic process;2.33779500553544e-28!GO:0006886;intracellular protein transport;3.0558519194763e-27!GO:0008380;RNA splicing;3.07799006880126e-27!GO:0031966;mitochondrial membrane;6.26732684362984e-27!GO:0019866;organelle inner membrane;9.4970731736084e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.56672748458534e-25!GO:0005783;endoplasmic reticulum;7.13309875249884e-25!GO:0005743;mitochondrial inner membrane;8.00420057696176e-25!GO:0006397;mRNA processing;3.27052842773679e-24!GO:0065003;macromolecular complex assembly;1.80042425684018e-23!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.90707212015333e-23!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.7012314248881e-23!GO:0022607;cellular component assembly;8.95378005345645e-22!GO:0006119;oxidative phosphorylation;1.8776352402042e-21!GO:0012505;endomembrane system;7.17689375281885e-21!GO:0006996;organelle organization and biogenesis;2.24070015603728e-20!GO:0006457;protein folding;4.10649415266049e-20!GO:0044455;mitochondrial membrane part;7.20084827581872e-20!GO:0005654;nucleoplasm;1.49790575933836e-19!GO:0044432;endoplasmic reticulum part;1.9248031511643e-19!GO:0005681;spliceosome;3.74199141507658e-19!GO:0044445;cytosolic part;6.42099931037246e-19!GO:0051649;establishment of cellular localization;6.54670255863273e-19!GO:0051641;cellular localization;7.23809380503933e-19!GO:0005794;Golgi apparatus;7.52534961802617e-19!GO:0015934;large ribosomal subunit;1.31024241373496e-18!GO:0048770;pigment granule;2.97143156820945e-18!GO:0042470;melanosome;2.97143156820945e-18!GO:0043228;non-membrane-bound organelle;1.61334542091587e-17!GO:0043232;intracellular non-membrane-bound organelle;1.61334542091587e-17!GO:0015935;small ribosomal subunit;1.61579086910478e-16!GO:0005746;mitochondrial respiratory chain;2.06981657619965e-16!GO:0048193;Golgi vesicle transport;2.32657773042195e-16!GO:0051186;cofactor metabolic process;3.00744099903431e-16!GO:0008134;transcription factor binding;3.56482478563356e-16!GO:0044451;nucleoplasm part;5.91824408679523e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.53758438046837e-15!GO:0016462;pyrophosphatase activity;2.68110529203815e-15!GO:0031980;mitochondrial lumen;3.39048509917708e-15!GO:0005759;mitochondrial matrix;3.39048509917708e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;3.60458196502208e-15!GO:0022618;protein-RNA complex assembly;3.86825916476036e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.96822813913068e-15!GO:0051082;unfolded protein binding;1.0638417896676e-14!GO:0017111;nucleoside-triphosphatase activity;1.14387391273486e-14!GO:0016874;ligase activity;1.53677499593502e-14!GO:0000166;nucleotide binding;2.36477571364032e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.36814787078756e-14!GO:0003954;NADH dehydrogenase activity;2.36814787078756e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.36814787078756e-14!GO:0006512;ubiquitin cycle;3.73430155699217e-14!GO:0006605;protein targeting;8.25049490653669e-14!GO:0016192;vesicle-mediated transport;9.25667478363585e-14!GO:0043285;biopolymer catabolic process;1.51308152474584e-13!GO:0000502;proteasome complex (sensu Eukaryota);1.53181349788104e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.86790767511183e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.16628433438023e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.28087147647585e-13!GO:0044265;cellular macromolecule catabolic process;2.31677134304658e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;3.29727307327515e-13!GO:0008135;translation factor activity, nucleic acid binding;3.87644189019162e-13!GO:0005789;endoplasmic reticulum membrane;5.4414848439256e-13!GO:0006732;coenzyme metabolic process;5.90273223750355e-13!GO:0019941;modification-dependent protein catabolic process;6.17998186080539e-13!GO:0043632;modification-dependent macromolecule catabolic process;6.17998186080539e-13!GO:0044257;cellular protein catabolic process;6.38061445357812e-13!GO:0006511;ubiquitin-dependent protein catabolic process;8.46507532807907e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.27161448117364e-12!GO:0045271;respiratory chain complex I;1.27161448117364e-12!GO:0005747;mitochondrial respiratory chain complex I;1.27161448117364e-12!GO:0005730;nucleolus;1.41717353398934e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.69112044712011e-12!GO:0005761;mitochondrial ribosome;1.86023517204857e-12!GO:0000313;organellar ribosome;1.86023517204857e-12!GO:0009057;macromolecule catabolic process;1.99468682966739e-12!GO:0042775;organelle ATP synthesis coupled electron transport;2.01502309935257e-12!GO:0042773;ATP synthesis coupled electron transport;2.01502309935257e-12!GO:0009055;electron carrier activity;3.74212459225516e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.05820992751689e-12!GO:0030163;protein catabolic process;4.55908529133081e-12!GO:0005793;ER-Golgi intermediate compartment;1.21386056079089e-11!GO:0044248;cellular catabolic process;1.49534732156249e-11!GO:0006259;DNA metabolic process;1.73138575576103e-11!GO:0003676;nucleic acid binding;2.14660323591803e-11!GO:0043412;biopolymer modification;2.86430107503993e-11!GO:0016070;RNA metabolic process;3.78346708749845e-11!GO:0003712;transcription cofactor activity;1.11840864698402e-10!GO:0006464;protein modification process;1.79179272582211e-10!GO:0017076;purine nucleotide binding;2.9581886550336e-10!GO:0032553;ribonucleotide binding;3.962930307095e-10!GO:0032555;purine ribonucleotide binding;3.962930307095e-10!GO:0012501;programmed cell death;4.56282834949814e-10!GO:0003743;translation initiation factor activity;5.09033156146738e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;6.17114653635827e-10!GO:0000375;RNA splicing, via transesterification reactions;6.17114653635827e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.17114653635827e-10!GO:0009259;ribonucleotide metabolic process;6.99078574980922e-10!GO:0006413;translational initiation;1.04097429143357e-09!GO:0006915;apoptosis;1.17600173527307e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.53774161517096e-09!GO:0008565;protein transporter activity;2.39831458696406e-09!GO:0009150;purine ribonucleotide metabolic process;2.71801731384822e-09!GO:0006446;regulation of translational initiation;4.07747753318562e-09!GO:0008219;cell death;4.57254560561686e-09!GO:0016265;death;4.57254560561686e-09!GO:0009199;ribonucleoside triphosphate metabolic process;4.62891542934795e-09!GO:0005788;endoplasmic reticulum lumen;4.84490871896018e-09!GO:0006888;ER to Golgi vesicle-mediated transport;5.09712181553087e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.33498110606725e-09!GO:0006163;purine nucleotide metabolic process;6.07458710686854e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.89849724415912e-09!GO:0009144;purine nucleoside triphosphate metabolic process;7.89849724415912e-09!GO:0009141;nucleoside triphosphate metabolic process;8.4365960974909e-09!GO:0009260;ribonucleotide biosynthetic process;9.16109808169481e-09!GO:0048523;negative regulation of cellular process;9.47847918408877e-09!GO:0044431;Golgi apparatus part;1.00772039041134e-08!GO:0008639;small protein conjugating enzyme activity;1.20635336202652e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.22268378572731e-08!GO:0043687;post-translational protein modification;1.27978877690055e-08!GO:0016491;oxidoreductase activity;1.30212199306009e-08!GO:0042254;ribosome biogenesis and assembly;1.41853604501131e-08!GO:0015986;ATP synthesis coupled proton transport;2.16145315302198e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.16145315302198e-08!GO:0004842;ubiquitin-protein ligase activity;2.42928833815709e-08!GO:0005768;endosome;2.62530447095027e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.74801534281534e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.74801534281534e-08!GO:0006164;purine nucleotide biosynthetic process;2.84378017170686e-08!GO:0031965;nuclear membrane;2.8917113440583e-08!GO:0006913;nucleocytoplasmic transport;2.91798980753801e-08!GO:0016604;nuclear body;2.94755051743682e-08!GO:0019787;small conjugating protein ligase activity;3.2827558044728e-08!GO:0030120;vesicle coat;3.52818907049564e-08!GO:0030662;coated vesicle membrane;3.52818907049564e-08!GO:0007049;cell cycle;3.73770220314692e-08!GO:0009060;aerobic respiration;4.22850699204388e-08!GO:0005635;nuclear envelope;4.5458108024874e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.61306768160154e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.61306768160154e-08!GO:0046034;ATP metabolic process;4.80548192474962e-08!GO:0051169;nuclear transport;4.87910230091518e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.28909702856373e-08!GO:0003714;transcription corepressor activity;8.20324713445436e-08!GO:0051188;cofactor biosynthetic process;8.75554010472273e-08!GO:0017038;protein import;9.31326837259713e-08!GO:0005524;ATP binding;9.83115585396785e-08!GO:0045333;cellular respiration;1.04146619688516e-07!GO:0006461;protein complex assembly;1.21188144240829e-07!GO:0005773;vacuole;1.35846159297861e-07!GO:0030554;adenyl nucleotide binding;1.37802455528143e-07!GO:0032559;adenyl ribonucleotide binding;1.42643184758423e-07!GO:0006399;tRNA metabolic process;1.7876387334076e-07!GO:0048475;coated membrane;2.05779780629033e-07!GO:0030117;membrane coat;2.05779780629033e-07!GO:0016887;ATPase activity;2.13004864731314e-07!GO:0042623;ATPase activity, coupled;2.23632751048888e-07!GO:0019829;cation-transporting ATPase activity;2.23632751048888e-07!GO:0006366;transcription from RNA polymerase II promoter;2.25504831648325e-07!GO:0008361;regulation of cell size;2.37344138719051e-07!GO:0006754;ATP biosynthetic process;2.56506352141385e-07!GO:0006753;nucleoside phosphate metabolic process;2.56506352141385e-07!GO:0016049;cell growth;2.90824154848932e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.96389064090371e-07!GO:0048519;negative regulation of biological process;3.28663005277258e-07!GO:0015078;hydrogen ion transmembrane transporter activity;3.52334075946594e-07!GO:0016607;nuclear speck;3.80982338367764e-07!GO:0016881;acid-amino acid ligase activity;4.02903490849292e-07!GO:0009056;catabolic process;4.31558941524524e-07!GO:0044453;nuclear membrane part;4.40350188148093e-07!GO:0007005;mitochondrion organization and biogenesis;4.53526680877182e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.4698432557268e-07!GO:0004812;aminoacyl-tRNA ligase activity;5.4698432557268e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.4698432557268e-07!GO:0016564;transcription repressor activity;6.54711094701594e-07!GO:0051187;cofactor catabolic process;8.68093069323353e-07!GO:0006974;response to DNA damage stimulus;9.38095959714787e-07!GO:0043038;amino acid activation;9.65139143065281e-07!GO:0006418;tRNA aminoacylation for protein translation;9.65139143065281e-07!GO:0043039;tRNA aminoacylation;9.65139143065281e-07!GO:0003924;GTPase activity;1.04550730154574e-06!GO:0006099;tricarboxylic acid cycle;1.25376405072553e-06!GO:0046356;acetyl-CoA catabolic process;1.25376405072553e-06!GO:0051789;response to protein stimulus;1.30630644258189e-06!GO:0006986;response to unfolded protein;1.30630644258189e-06!GO:0005798;Golgi-associated vesicle;1.41061589053368e-06!GO:0000323;lytic vacuole;1.44299413660585e-06!GO:0005764;lysosome;1.44299413660585e-06!GO:0000139;Golgi membrane;1.72423224968476e-06!GO:0009109;coenzyme catabolic process;1.8565631144424e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.96138734523884e-06!GO:0006752;group transfer coenzyme metabolic process;2.68437813245753e-06!GO:0008654;phospholipid biosynthetic process;2.72348605839115e-06!GO:0006084;acetyl-CoA metabolic process;2.89336061814398e-06!GO:0009108;coenzyme biosynthetic process;2.91662245139457e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.98812271404076e-06!GO:0031988;membrane-bound vesicle;3.02086812434454e-06!GO:0065002;intracellular protein transport across a membrane;3.0978177945277e-06!GO:0030532;small nuclear ribonucleoprotein complex;3.52874756210216e-06!GO:0001558;regulation of cell growth;3.89817860977476e-06!GO:0009117;nucleotide metabolic process;3.96936224871858e-06!GO:0051246;regulation of protein metabolic process;4.05348573345487e-06!GO:0006091;generation of precursor metabolites and energy;4.90827038679377e-06!GO:0016853;isomerase activity;4.96461623330867e-06!GO:0031252;leading edge;5.57456599208259e-06!GO:0045259;proton-transporting ATP synthase complex;5.58096796495865e-06!GO:0030036;actin cytoskeleton organization and biogenesis;5.71083109049061e-06!GO:0050794;regulation of cellular process;5.92792455974073e-06!GO:0032446;protein modification by small protein conjugation;6.16287888732442e-06!GO:0022402;cell cycle process;8.36750276126511e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;8.3842429936259e-06!GO:0016567;protein ubiquitination;8.46037199738387e-06!GO:0051726;regulation of cell cycle;9.15613820369369e-06!GO:0043067;regulation of programmed cell death;1.16983070616369e-05!GO:0031324;negative regulation of cellular metabolic process;1.16983070616369e-05!GO:0000074;regulation of progression through cell cycle;1.16983070616369e-05!GO:0000151;ubiquitin ligase complex;1.2494203035777e-05!GO:0009719;response to endogenous stimulus;1.45415779367621e-05!GO:0005643;nuclear pore;1.50015965075988e-05!GO:0042981;regulation of apoptosis;1.60978882875177e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.63401577595442e-05!GO:0030133;transport vesicle;1.7155877719117e-05!GO:0008026;ATP-dependent helicase activity;1.73126557909884e-05!GO:0045454;cell redox homeostasis;1.7570801543395e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.76021107874944e-05!GO:0043069;negative regulation of programmed cell death;1.84394103598826e-05!GO:0044440;endosomal part;2.33766352820942e-05!GO:0010008;endosome membrane;2.33766352820942e-05!GO:0004386;helicase activity;2.36734839729318e-05!GO:0006613;cotranslational protein targeting to membrane;2.38881908730312e-05!GO:0045786;negative regulation of progression through cell cycle;2.42462394117664e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.44318327190324e-05!GO:0031982;vesicle;2.55484734635154e-05!GO:0016787;hydrolase activity;3.04130710441225e-05!GO:0005667;transcription factor complex;3.19472238043815e-05!GO:0031410;cytoplasmic vesicle;3.1956943939377e-05!GO:0006364;rRNA processing;3.1956943939377e-05!GO:0006281;DNA repair;3.1956943939377e-05!GO:0043066;negative regulation of apoptosis;3.40863221652428e-05!GO:0051170;nuclear import;3.53555798984608e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.53555798984608e-05!GO:0005770;late endosome;3.71319304200691e-05!GO:0000245;spliceosome assembly;3.7395656138743e-05!GO:0015980;energy derivation by oxidation of organic compounds;4.36854272639443e-05!GO:0005762;mitochondrial large ribosomal subunit;4.81015774976879e-05!GO:0000315;organellar large ribosomal subunit;4.81015774976879e-05!GO:0003697;single-stranded DNA binding;4.86042513607019e-05!GO:0016072;rRNA metabolic process;4.9061121917734e-05!GO:0006606;protein import into nucleus;4.91949505221075e-05!GO:0044262;cellular carbohydrate metabolic process;5.30275696719214e-05!GO:0030029;actin filament-based process;5.74407704347229e-05!GO:0006793;phosphorus metabolic process;6.58571556305624e-05!GO:0006796;phosphate metabolic process;6.58571556305624e-05!GO:0005791;rough endoplasmic reticulum;6.87797707106553e-05!GO:0005525;GTP binding;7.19474111467545e-05!GO:0030867;rough endoplasmic reticulum membrane;7.62608628682763e-05!GO:0046930;pore complex;8.4994874531794e-05!GO:0033116;ER-Golgi intermediate compartment membrane;8.5235539796653e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;8.64931433301152e-05!GO:0009892;negative regulation of metabolic process;8.82295516964044e-05!GO:0046474;glycerophospholipid biosynthetic process;9.05739845347793e-05!GO:0005905;coated pit;9.41119456424053e-05!GO:0004298;threonine endopeptidase activity;9.51248733263735e-05!GO:0006916;anti-apoptosis;0.000106507043802079!GO:0016859;cis-trans isomerase activity;0.000106544095743037!GO:0019867;outer membrane;0.000148369508090945!GO:0006325;establishment and/or maintenance of chromatin architecture;0.000148954147589335!GO:0043566;structure-specific DNA binding;0.000153232073673836!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00016044885886304!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000186437375847856!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000187012006451436!GO:0006612;protein targeting to membrane;0.00021485161831478!GO:0065004;protein-DNA complex assembly;0.000229917682274159!GO:0005769;early endosome;0.000253559644372161!GO:0016740;transferase activity;0.000254654023945837!GO:0006839;mitochondrial transport;0.000265913954673769!GO:0008610;lipid biosynthetic process;0.000269092053872821!GO:0003724;RNA helicase activity;0.000271546529201667!GO:0043021;ribonucleoprotein binding;0.000272035642729404!GO:0016310;phosphorylation;0.000272440514611418!GO:0050789;regulation of biological process;0.000272440514611418!GO:0031968;organelle outer membrane;0.000282715639844552!GO:0005048;signal sequence binding;0.000285177767561489!GO:0006403;RNA localization;0.000295509615794517!GO:0000278;mitotic cell cycle;0.000297071969226008!GO:0007050;cell cycle arrest;0.00030088576456473!GO:0006323;DNA packaging;0.000319781186847287!GO:0050657;nucleic acid transport;0.00032614271627367!GO:0051236;establishment of RNA localization;0.00032614271627367!GO:0050658;RNA transport;0.00032614271627367!GO:0005885;Arp2/3 protein complex;0.000338980587562537!GO:0008092;cytoskeletal protein binding;0.000344303375064963!GO:0040008;regulation of growth;0.000344757483695835!GO:0004576;oligosaccharyl transferase activity;0.000346996976950744!GO:0030663;COPI coated vesicle membrane;0.000347820380156109!GO:0030126;COPI vesicle coat;0.000347820380156109!GO:0032561;guanyl ribonucleotide binding;0.000356242651708426!GO:0019001;guanyl nucleotide binding;0.000356242651708426!GO:0016563;transcription activator activity;0.000378614498207427!GO:0008250;oligosaccharyl transferase complex;0.000429379791960142!GO:0003713;transcription coactivator activity;0.000452840112938585!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000506462559398412!GO:0006260;DNA replication;0.000518757912650785!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000536023061214055!GO:0030137;COPI-coated vesicle;0.000548732235040975!GO:0043623;cellular protein complex assembly;0.000581143835823354!GO:0046489;phosphoinositide biosynthetic process;0.000587753836810588!GO:0016044;membrane organization and biogenesis;0.000648038838311655!GO:0016481;negative regulation of transcription;0.000709325586420281!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000771394087673855!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000778296135719463!GO:0015399;primary active transmembrane transporter activity;0.000778296135719463!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000816725728588951!GO:0043284;biopolymer biosynthetic process;0.000888983290222658!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000909396967826194!GO:0006891;intra-Golgi vesicle-mediated transport;0.000977538489777659!GO:0005741;mitochondrial outer membrane;0.00102945567610365!GO:0051920;peroxiredoxin activity;0.00104290446190374!GO:0006979;response to oxidative stress;0.00105934613885345!GO:0018196;peptidyl-asparagine modification;0.0011114325886728!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0011114325886728!GO:0043681;protein import into mitochondrion;0.00115986713157294!GO:0000314;organellar small ribosomal subunit;0.00133904053190962!GO:0005763;mitochondrial small ribosomal subunit;0.00133904053190962!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00134389863326057!GO:0051427;hormone receptor binding;0.00134864231817346!GO:0051276;chromosome organization and biogenesis;0.00138946928588262!GO:0030176;integral to endoplasmic reticulum membrane;0.00139682597428151!GO:0006818;hydrogen transport;0.00143479050386618!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0014371961704944!GO:0015992;proton transport;0.00144175538376882!GO:0019843;rRNA binding;0.00145615441229425!GO:0016568;chromatin modification;0.00146172393697468!GO:0030658;transport vesicle membrane;0.00147813223100163!GO:0016126;sterol biosynthetic process;0.00161730731265262!GO:0046467;membrane lipid biosynthetic process;0.00173823038475056!GO:0006333;chromatin assembly or disassembly;0.00174434926686189!GO:0009165;nucleotide biosynthetic process;0.00174956715144467!GO:0007010;cytoskeleton organization and biogenesis;0.0017807643189203!GO:0051329;interphase of mitotic cell cycle;0.00180250041213423!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00184401708662635!GO:0016779;nucleotidyltransferase activity;0.00184401708662635!GO:0005813;centrosome;0.00196605602863009!GO:0006650;glycerophospholipid metabolic process;0.00213799650913125!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.00214395766852847!GO:0031072;heat shock protein binding;0.00217935124426505!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00218854908756777!GO:0007006;mitochondrial membrane organization and biogenesis;0.00220226004405475!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00220498945372805!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00221252054375179!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00221252054375179!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00221252054375179!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00224014765545935!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00232165996956307!GO:0051325;interphase;0.00233300632231076!GO:0007243;protein kinase cascade;0.00235103954097127!GO:0035257;nuclear hormone receptor binding;0.00239189608319288!GO:0019899;enzyme binding;0.00262613746283568!GO:0006626;protein targeting to mitochondrion;0.00276484366853922!GO:0006414;translational elongation;0.00277132891232632!GO:0004177;aminopeptidase activity;0.00283820012696945!GO:0048471;perinuclear region of cytoplasm;0.00283880632865255!GO:0015630;microtubule cytoskeleton;0.00285084704854162!GO:0030132;clathrin coat of coated pit;0.00287034756390439!GO:0006892;post-Golgi vesicle-mediated transport;0.0028743750706488!GO:0048487;beta-tubulin binding;0.00287473466499587!GO:0003899;DNA-directed RNA polymerase activity;0.00287925691260283!GO:0007040;lysosome organization and biogenesis;0.00288886770228596!GO:0048500;signal recognition particle;0.00289709169727465!GO:0005815;microtubule organizing center;0.00291089979300134!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00310617878976542!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00312350082856355!GO:0051028;mRNA transport;0.00333262196836431!GO:0006383;transcription from RNA polymerase III promoter;0.00350715240487294!GO:0019752;carboxylic acid metabolic process;0.00357627257826615!GO:0008186;RNA-dependent ATPase activity;0.00370455717661496!GO:0006497;protein amino acid lipidation;0.00371941693434524!GO:0030027;lamellipodium;0.00376331909883188!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0037697622184061!GO:0006082;organic acid metabolic process;0.00387810817469181!GO:0007033;vacuole organization and biogenesis;0.00404034398376319!GO:0030134;ER to Golgi transport vesicle;0.00404153633786071!GO:0030880;RNA polymerase complex;0.00416740698383399!GO:0016197;endosome transport;0.00430883716988722!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00435337442877399!GO:0015002;heme-copper terminal oxidase activity;0.00435337442877399!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00435337442877399!GO:0004129;cytochrome-c oxidase activity;0.00435337442877399!GO:0030660;Golgi-associated vesicle membrane;0.00440121834061506!GO:0043492;ATPase activity, coupled to movement of substances;0.0047353689958223!GO:0030127;COPII vesicle coat;0.00486056364295014!GO:0012507;ER to Golgi transport vesicle membrane;0.00486056364295014!GO:0005583;fibrillar collagen;0.00488184777516859!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00490929448887046!GO:0030118;clathrin coat;0.00491174228192995!GO:0048522;positive regulation of cellular process;0.00499541908607853!GO:0003729;mRNA binding;0.00526851446073652!GO:0019222;regulation of metabolic process;0.00557856266748495!GO:0046483;heterocycle metabolic process;0.00571114468508453!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0057510318659398!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0057510318659398!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0057574131513866!GO:0006509;membrane protein ectodomain proteolysis;0.00576699961484607!GO:0033619;membrane protein proteolysis;0.00576699961484607!GO:0022890;inorganic cation transmembrane transporter activity;0.00580976739563157!GO:0006506;GPI anchor biosynthetic process;0.00603415479993077!GO:0005581;collagen;0.00621813539050013!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0063755644236254!GO:0045047;protein targeting to ER;0.0063755644236254!GO:0005869;dynactin complex;0.00639727036288742!GO:0043433;negative regulation of transcription factor activity;0.00661619580699482!GO:0042158;lipoprotein biosynthetic process;0.00664067905211983!GO:0001726;ruffle;0.00711013647693779!GO:0043488;regulation of mRNA stability;0.00744926486617594!GO:0043487;regulation of RNA stability;0.00744926486617594!GO:0048468;cell development;0.00763492954790802!GO:0017166;vinculin binding;0.00770782104774779!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00781223294702455!GO:0030384;phosphoinositide metabolic process;0.00781223294702455!GO:0030659;cytoplasmic vesicle membrane;0.00829485824595274!GO:0051168;nuclear export;0.00836745932771582!GO:0008180;signalosome;0.00846345007134867!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00846345007134867!GO:0000428;DNA-directed RNA polymerase complex;0.00846345007134867!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00858097202378529!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00875205511462956!GO:0004004;ATP-dependent RNA helicase activity;0.008885311823594!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00937120539573283!GO:0050811;GABA receptor binding;0.00937972612609994!GO:0045045;secretory pathway;0.00970043440753242!GO:0016363;nuclear matrix;0.00979783217272538!GO:0006505;GPI anchor metabolic process;0.00989384569288952!GO:0008312;7S RNA binding;0.0101383291652096!GO:0008139;nuclear localization sequence binding;0.0101796347145389!GO:0065009;regulation of a molecular function;0.0105400815205277!GO:0051252;regulation of RNA metabolic process;0.0106179347742295!GO:0000049;tRNA binding;0.0107665329873884!GO:0003779;actin binding;0.0109213787286947!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0110456514539205!GO:0007264;small GTPase mediated signal transduction;0.0111644482863054!GO:0003746;translation elongation factor activity;0.0111644482863054!GO:0001527;microfibril;0.0113771349788824!GO:0000059;protein import into nucleus, docking;0.0116598512964211!GO:0016860;intramolecular oxidoreductase activity;0.0116665941989929!GO:0007034;vacuolar transport;0.0116665941989929!GO:0006334;nucleosome assembly;0.0116665941989929!GO:0031418;L-ascorbic acid binding;0.0118138135876866!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0119358994850201!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0119358994850201!GO:0051087;chaperone binding;0.0119843637739095!GO:0051287;NAD binding;0.0119843637739095!GO:0045792;negative regulation of cell size;0.0131584560973357!GO:0005774;vacuolar membrane;0.0131699593925394!GO:0006402;mRNA catabolic process;0.0134540972377147!GO:0006790;sulfur metabolic process;0.0134562001926529!GO:0030041;actin filament polymerization;0.0138393069577482!GO:0030308;negative regulation of cell growth;0.0138698430411081!GO:0051128;regulation of cellular component organization and biogenesis;0.0143107600189089!GO:0035258;steroid hormone receptor binding;0.0145504764917788!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0145971361415652!GO:0006643;membrane lipid metabolic process;0.0150316271390858!GO:0015631;tubulin binding;0.0151936463669233!GO:0044420;extracellular matrix part;0.0154074660467432!GO:0006118;electron transport;0.0154079347068399!GO:0006354;RNA elongation;0.0154735626937984!GO:0030521;androgen receptor signaling pathway;0.0155419213384764!GO:0003690;double-stranded DNA binding;0.0155419213384764!GO:0031497;chromatin assembly;0.0157384458754386!GO:0006740;NADPH regeneration;0.0157811180902673!GO:0006098;pentose-phosphate shunt;0.0157811180902673!GO:0006595;polyamine metabolic process;0.0157948327141204!GO:0006984;ER-nuclear signaling pathway;0.0159284127690933!GO:0051540;metal cluster binding;0.0159284127690933!GO:0051536;iron-sulfur cluster binding;0.0159284127690933!GO:0005694;chromosome;0.0160366256066106!GO:0005862;muscle thin filament tropomyosin;0.0160764341956836!GO:0043022;ribosome binding;0.0162918638734501!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0163936832796905!GO:0050662;coenzyme binding;0.0169367968353334!GO:0045892;negative regulation of transcription, DNA-dependent;0.0173975668650685!GO:0016272;prefoldin complex;0.0177030386630147!GO:0005595;collagen type XII;0.0180748943251447!GO:0030145;manganese ion binding;0.018110304749148!GO:0003684;damaged DNA binding;0.0181814017104102!GO:0022403;cell cycle phase;0.0187830217612204!GO:0007030;Golgi organization and biogenesis;0.0191539360761377!GO:0006695;cholesterol biosynthetic process;0.0192596060485065!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0195068428277625!GO:0031529;ruffle organization and biogenesis;0.0196171116048848!GO:0000785;chromatin;0.0196633579520381!GO:0006897;endocytosis;0.0202943696135001!GO:0010324;membrane invagination;0.0202943696135001!GO:0030125;clathrin vesicle coat;0.0208603654471882!GO:0030665;clathrin coated vesicle membrane;0.0208603654471882!GO:0005801;cis-Golgi network;0.021051727360091!GO:0008154;actin polymerization and/or depolymerization;0.0215336810069221!GO:0065007;biological regulation;0.0215336810069221!GO:0031901;early endosome membrane;0.0215336810069221!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0216800391953616!GO:0035035;histone acetyltransferase binding;0.0218069322034115!GO:0033559;unsaturated fatty acid metabolic process;0.0218719028058841!GO:0006636;unsaturated fatty acid biosynthetic process;0.0218719028058841!GO:0006778;porphyrin metabolic process;0.0220300334763819!GO:0033013;tetrapyrrole metabolic process;0.0220300334763819!GO:0009967;positive regulation of signal transduction;0.0221830369528941!GO:0005684;U2-dependent spliceosome;0.0225744325782001!GO:0003711;transcription elongation regulator activity;0.0225744325782001!GO:0046519;sphingoid metabolic process;0.0226257854663138!GO:0007160;cell-matrix adhesion;0.0228892290162988!GO:0000082;G1/S transition of mitotic cell cycle;0.0228915033691388!GO:0008033;tRNA processing;0.0229307774676735!GO:0006739;NADP metabolic process;0.0231218808642234!GO:0045936;negative regulation of phosphate metabolic process;0.023217195042806!GO:0030518;steroid hormone receptor signaling pathway;0.0232598938607023!GO:0051101;regulation of DNA binding;0.0241475543225228!GO:0031589;cell-substrate adhesion;0.0242349514481328!GO:0044433;cytoplasmic vesicle part;0.0249831905557063!GO:0031902;late endosome membrane;0.025855417644135!GO:0031543;peptidyl-proline dioxygenase activity;0.0259974450576126!GO:0006644;phospholipid metabolic process;0.0273025407347263!GO:0000096;sulfur amino acid metabolic process;0.0274532056083609!GO:0030503;regulation of cell redox homeostasis;0.0274790193687019!GO:0000209;protein polyubiquitination;0.0276757908420651!GO:0006352;transcription initiation;0.0277875490617417!GO:0016408;C-acyltransferase activity;0.0278249470178336!GO:0044255;cellular lipid metabolic process;0.0278249470178336!GO:0000287;magnesium ion binding;0.0278249470178336!GO:0044437;vacuolar part;0.0283268963517968!GO:0051301;cell division;0.0287882610333179!GO:0051098;regulation of binding;0.0287882610333179!GO:0030119;AP-type membrane coat adaptor complex;0.0288851267918317!GO:0007041;lysosomal transport;0.0288997228102917!GO:0005586;collagen type III;0.0295458496800046!GO:0032984;macromolecular complex disassembly;0.0296575948503162!GO:0005832;chaperonin-containing T-complex;0.0300910909470772!GO:0044427;chromosomal part;0.0306207617813404!GO:0030433;ER-associated protein catabolic process;0.032169682410388!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.032169682410388!GO:0008147;structural constituent of bone;0.032576983335535!GO:0000902;cell morphogenesis;0.0334243249337338!GO:0032989;cellular structure morphogenesis;0.0334243249337338!GO:0051539;4 iron, 4 sulfur cluster binding;0.033570460172961!GO:0000339;RNA cap binding;0.0343170872616275!GO:0008022;protein C-terminus binding;0.0348280279096052!GO:0019798;procollagen-proline dioxygenase activity;0.0348512008168211!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0352723088092892!GO:0000030;mannosyltransferase activity;0.0352780992861921!GO:0042168;heme metabolic process;0.0353299193918879!GO:0003756;protein disulfide isomerase activity;0.0353299193918879!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0353299193918879!GO:0008632;apoptotic program;0.0354122683986588!GO:0009112;nucleobase metabolic process;0.0356200948931619!GO:0006289;nucleotide-excision repair;0.0356643937085575!GO:0006635;fatty acid beta-oxidation;0.0359131106121244!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0368613882982122!GO:0022408;negative regulation of cell-cell adhesion;0.0372879943612019!GO:0030833;regulation of actin filament polymerization;0.0374041468879711!GO:0008652;amino acid biosynthetic process;0.0378208296653185!GO:0003923;GPI-anchor transamidase activity;0.0379465116139652!GO:0016255;attachment of GPI anchor to protein;0.0379465116139652!GO:0042765;GPI-anchor transamidase complex;0.0379465116139652!GO:0048144;fibroblast proliferation;0.0390240843192817!GO:0048145;regulation of fibroblast proliferation;0.0390240843192817!GO:0005520;insulin-like growth factor binding;0.0397012725204362!GO:0005765;lysosomal membrane;0.0397648063812092!GO:0007021;tubulin folding;0.0399884724382801!GO:0045926;negative regulation of growth;0.0401467533986112!GO:0012506;vesicle membrane;0.0401467533986112!GO:0008484;sulfuric ester hydrolase activity;0.0405001452965543!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0405230349106353!GO:0030032;lamellipodium biogenesis;0.0413492312947344!GO:0006401;RNA catabolic process;0.0419523699757987!GO:0005975;carbohydrate metabolic process;0.0426261046277926!GO:0008320;protein transmembrane transporter activity;0.0429621856900952!GO:0007067;mitosis;0.0430233401073848!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0430233401073848!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0430233401073848!GO:0050681;androgen receptor binding;0.0434245780767815!GO:0033673;negative regulation of kinase activity;0.043638381314954!GO:0006469;negative regulation of protein kinase activity;0.043638381314954!GO:0043624;cellular protein complex disassembly;0.0438444773096089!GO:0004228;gelatinase A activity;0.0439172171032178!GO:0001955;blood vessel maturation;0.0439172171032178!GO:0000087;M phase of mitotic cell cycle;0.0439691644069059!GO:0043241;protein complex disassembly;0.0454510665000079!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0459703503704337!GO:0016251;general RNA polymerase II transcription factor activity;0.0460690150967752!GO:0030911;TPR domain binding;0.0463474800934525!GO:0044452;nucleolar part;0.0463474800934525!GO:0030508;thiol-disulfide exchange intermediate activity;0.0476157984154898!GO:0006672;ceramide metabolic process;0.0477358757733055!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0479546330482763!GO:0045639;positive regulation of myeloid cell differentiation;0.0486602797466671!GO:0015036;disulfide oxidoreductase activity;0.0489551800776081!GO:0051271;negative regulation of cell motility;0.0490259809066941!GO:0042326;negative regulation of phosphorylation;0.0494929430090497!GO:0030131;clathrin adaptor complex;0.0497612371439397!GO:0051716;cellular response to stimulus;0.0499587966998194
 +
|sample_id=11328
 +
|sample_note=
 +
|sample_sex=female
 +
|sample_species=Human (Homo sapiens)
 +
|sample_strain=
 +
|sample_tissue=breast
 +
|top_motifs=UFEwm:2.80293496811;HES1:2.58757002108;NKX2-2,8:2.5521625292;ESR1:2.47847851635;ALX4:2.15678500232;XBP1:2.00479319188;TAL1_TCF{3,4,12}:1.90541596466;GLI1..3:1.80851566127;GZF1:1.79517867682;NKX3-1:1.72803758361;RXR{A,B,G}:1.68983082134;FOXL1:1.65397399965;EVI1:1.64426008286;PAX1,9:1.63483015221;RXRA_VDR{dimer}:1.59058346059;HMGA1,2:1.58041579901;ZNF238:1.56743668341;TP53:1.54097317567;NFE2L1:1.52129397953;NANOG{mouse}:1.51369281334;GCM1,2:1.50551744372;TFAP4:1.49245140398;NR6A1:1.42111404188;IKZF1:1.41263927373;ATF6:1.38596455943;HMX1:1.3326470274;TEAD1:1.26221302513;EBF1:1.24390463461;MAFB:1.23080888666;HOX{A5,B5}:1.19698534427;KLF4:1.18328889035;EN1,2:1.09880031923;SMAD1..7,9:1.03302492366;ZNF423:1.01391612038;NR3C1:1.01318519689;TFAP2B:0.983933033378;TEF:0.96031248529;TBX4,5:0.946300044867;NKX3-2:0.868848468457;SRF:0.854814719279;HIF1A:0.818703221251;GATA4:0.815191555983;MTE{core}:0.813599962643;MYBL2:0.812765856712;SPZ1:0.809931972199;ARID5B:0.738861807761;TFCP2:0.73869775709;HOX{A4,D4}:0.723928662143;GFI1B:0.663596395695;AIRE:0.649393106707;NFATC1..3:0.57908383527;NFIX:0.570060871889;HIC1:0.56434827897;GTF2I:0.536002603648;TLX1..3_NFIC{dimer}:0.525764298491;MAZ:0.52404323876;NKX2-1,4:0.522051920475;ZNF148:0.513577325473;HLF:0.510390788433;DBP:0.46663859101;LHX3,4:0.461919816366;ZIC1..3:0.454812361874;FOXA2:0.447723835598;MYB:0.439505894778;POU6F1:0.405195499453;PAX5:0.380908582068;GTF2A1,2:0.368948586333;TFAP2{A,C}:0.340966366396;AR:0.298116585943;HAND1,2:0.298109335045;RREB1:0.238825411624;HOX{A6,A7,B6,B7}:0.235515344565;MZF1:0.227401215727;NHLH1,2:0.209138107157;NFE2L2:0.190761327642;ZBTB6:0.180696775553;bHLH_family:0.155700326309;T:0.149219919645;PATZ1:0.144717233059;HSF1,2:0.129728961931;TOPORS:0.120244726904;ADNP_IRX_SIX_ZHX:0.114104737116;MTF1:0.0800906429874;MYFfamily:0.068368565076;SOX17:0.046693942631;STAT2,4,6:0.0405914028727;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0128036781581;TBP:0.00994778313669;YY1:0.00696032487257;FOXO1,3,4:-0.0254071043914;REST:-0.0260928594898;XCPE1{core}:-0.0335029096014;NR5A1,2:-0.0386042452599;SOX5:-0.0442097783947;PRDM1:-0.0611277936413;MEF2{A,B,C,D}:-0.0781556386651;BACH2:-0.163332443671;ONECUT1,2:-0.167114359297;STAT5{A,B}:-0.185185546355;ELK1,4_GABP{A,B1}:-0.19132316052;ZNF384:-0.193254379956;HBP1_HMGB_SSRP1_UBTF:-0.196991374364;HNF1A:-0.202215175395;CDC5L:-0.217555883142;EGR1..3:-0.236980200017;IKZF2:-0.237432713032;TFDP1:-0.259627808762;BPTF:-0.281025422382;PAX2:-0.291746426986;ZBTB16:-0.29421427831;CEBPA,B_DDIT3:-0.31959958488;SREBF1,2:-0.32470568696;OCT4_SOX2{dimer}:-0.32490228123;STAT1,3:-0.357564615521;PAX4:-0.363403317612;CREB1:-0.372607344758;FOS_FOS{B,L1}_JUN{B,D}:-0.385523731071;ZNF143:-0.411185136226;HNF4A_NR2F1,2:-0.419388635345;POU3F1..4:-0.42356375886;PAX8:-0.424536028638;LEF1_TCF7_TCF7L1,2:-0.482203930216;RFX1:-0.496839650054;IRF1,2:-0.497586602356;FOSL2:-0.51575967936;DMAP1_NCOR{1,2}_SMARC:-0.528534929948;PAX3,7:-0.532073227174;RUNX1..3:-0.534990712517;FOXP3:-0.537414847413;POU1F1:-0.547229597576;GFI1:-0.555111996094;SNAI1..3:-0.563822534255;FOX{D1,D2}:-0.564613186069;AHR_ARNT_ARNT2:-0.566372637138;NFE2:-0.567287501005;FOXM1:-0.574658989319;SPI1:-0.592209049085;PITX1..3:-0.593642401584;NFKB1_REL_RELA:-0.596254808449;TGIF1:-0.60662653502;SOX2:-0.614207986196;LMO2:-0.655473600871;MED-1{core}:-0.663070509433;ATF5_CREB3:-0.665034796115;EP300:-0.669702925034;ETS1,2:-0.678451302763;NRF1:-0.688489866828;FOXD3:-0.70004213034;NFIL3:-0.701070439047;ZEB1:-0.713093123363;PAX6:-0.729862418965;SP1:-0.732086901645;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.737089339178;SPIB:-0.737668477016;NKX6-1,2:-0.7580579151;ESRRA:-0.765119529837;SOX{8,9,10}:-0.768032324952;NKX2-3_NKX2-5:-0.827553077995;ZFP161:-0.840583481714;ATF4:-0.860915434575;JUN:-0.871726226202;POU5F1:-0.889090588261;PPARG:-0.900614913441;BREu{core}:-0.902491076682;ELF1,2,4:-0.905494806966;NR1H4:-0.915777195919;ALX1:-0.940071073589;E2F1..5:-0.949197261625;FOXP1:-0.959575629146;HOXA9_MEIS1:-0.99054994048;GATA6:-1.04588798876;FOX{I1,J2}:-1.05978319355;CDX1,2,4:-1.06066706897;FOXN1:-1.07402658132;PRRX1,2:-1.08868777199;TLX2:-1.0918561122;IRF7:-1.18286743297;CUX2:-1.23954749139;FOX{F1,F2,J1}:-1.24442871125;NFY{A,B,C}:-1.30504956489;RFX2..5_RFXANK_RFXAP:-1.35914680518;RORA:-1.36862229369;VSX1,2:-1.40612898189;ATF2:-1.40999462995;FOXQ1:-1.42714477876;MYOD1:-1.52983009729;PBX1:-1.5453215447;RBPJ:-1.58042704475;CRX:-1.58808334235;POU2F1..3:-1.65000594379;NANOG:-1.95683836211;PDX1:-1.98169871655
 +
|xref=
 +
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11328-117E5;search_select_hide=table117:FF:11328-117E5
 
}}
 
}}

Latest revision as of 08:52, 4 June 2020

Name:Preadipocyte - breast, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11971
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebreast
dev stage40 years old adult
sexfemale
age40
cell typepreadipocyte
cell lineNA
companyZenbio
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005471
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11971 CAGE DRX008408 DRR009280
Accession ID Hg19

Library idBAMCTSS
CNhs11971 DRZ000705 DRZ002090
Accession ID Hg38

Library idBAMCTSS
CNhs11971 DRZ012055 DRZ013440
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005471
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10007.CGTACG sRNA-Seq DRX037107 DRR041473
Accession ID Hg19

Library idBAMCTSS
SRhi10007.CGTACG DRZ007115


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0534
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma--0.303
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair1.251
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19--0.166
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle7.902214e-4
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.611
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.386
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.653
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.265
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.265
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal1.134
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus--0.434
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0776
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.193
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.933
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8--0.0111
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small--0.444
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.327
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.265
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.872
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.781
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte1.23
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.472
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic1.23
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.107
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal1.169
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11971

Jaspar motif P-value
MA0002.2 0.566
MA0003.1 0.252
MA0004.1 0.545
MA0006.1 0.0975
MA0007.1 0.584
MA0009.1 0.309
MA0014.1 0.216
MA0017.1 0.74
MA0018.2 3.64976e-5
MA0019.1 0.549
MA0024.1 1.94203e-4
MA0025.1 0.00283
MA0027.1 0.545
MA0028.1 0.0156
MA0029.1 0.303
MA0030.1 0.118
MA0031.1 0.0789
MA0035.2 0.0482
MA0038.1 0.00655
MA0039.2 0.00733
MA0040.1 0.2
MA0041.1 0.742
MA0042.1 0.996
MA0043.1 4.98064e-5
MA0046.1 0.272
MA0047.2 0.417
MA0048.1 0.202
MA0050.1 3.02813e-5
MA0051.1 0.00267
MA0052.1 0.0655
MA0055.1 0.985
MA0057.1 0.237
MA0058.1 0.292
MA0059.1 0.582
MA0060.1 5.71477e-10
MA0061.1 0.0886
MA0062.2 9.99918e-7
MA0065.2 0.864
MA0066.1 0.259
MA0067.1 0.0174
MA0068.1 0.675
MA0069.1 0.0356
MA0070.1 0.775
MA0071.1 0.351
MA0072.1 0.483
MA0073.1 0.847
MA0074.1 0.176
MA0076.1 0.00171
MA0077.1 0.955
MA0078.1 0.865
MA0079.2 0.791
MA0080.2 5.07658e-7
MA0081.1 0.0139
MA0083.1 0.189
MA0084.1 0.518
MA0087.1 0.558
MA0088.1 0.601
MA0090.1 8.56278e-4
MA0091.1 0.0497
MA0092.1 0.193
MA0093.1 0.452
MA0099.2 4.57806e-5
MA0100.1 0.548
MA0101.1 4.45388e-4
MA0102.2 0.0361
MA0103.1 0.138
MA0104.2 0.0478
MA0105.1 0.372
MA0106.1 0.0763
MA0107.1 3.16606e-4
MA0108.2 0.662
MA0111.1 0.71
MA0112.2 1.17522e-4
MA0113.1 0.363
MA0114.1 0.757
MA0115.1 0.0662
MA0116.1 0.128
MA0117.1 0.2
MA0119.1 0.124
MA0122.1 0.406
MA0124.1 0.0166
MA0125.1 0.232
MA0131.1 0.237
MA0135.1 0.284
MA0136.1 1.59505e-10
MA0137.2 0.122
MA0138.2 0.0395
MA0139.1 0.952
MA0140.1 0.218
MA0141.1 0.461
MA0142.1 0.405
MA0143.1 0.306
MA0144.1 0.999
MA0145.1 0.213
MA0146.1 0.762
MA0147.1 0.117
MA0148.1 0.353
MA0149.1 0.68
MA0150.1 0.0236
MA0152.1 0.0318
MA0153.1 0.926
MA0154.1 0.323
MA0155.1 0.113
MA0156.1 2.43783e-8
MA0157.1 0.261
MA0159.1 0.0652
MA0160.1 0.351
MA0162.1 0.0751
MA0163.1 0.0145
MA0164.1 0.62
MA0258.1 0.0358
MA0259.1 0.29



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11971

Novel motif P-value
1 0.406
10 0.342
100 0.996
101 0.194
102 0.269
103 0.396
104 0.677
105 0.0598
106 0.0472
107 0.0396
108 0.157
109 0.478
11 0.384
110 0.455
111 0.359
112 0.303
113 0.243
114 0.0303
115 0.00852
116 0.0461
117 0.941
118 0.452
119 0.93
12 0.322
120 0.31
121 0.69
122 0.181
123 0.0506
124 0.44
125 0.815
126 0.765
127 0.52
128 0.106
129 0.941
13 0.956
130 0.532
131 0.973
132 0.475
133 0.864
134 0.631
135 0.529
136 0.566
137 0.537
138 0.92
139 0.222
14 0.28
140 0.717
141 0.991
142 0.995
143 0.431
144 0.653
145 0.904
146 0.756
147 0.176
148 0.99
149 0.00165
15 0.886
150 0.421
151 0.831
152 0.00682
153 0.193
154 0.872
155 0.105
156 0.961
157 0.574
158 0.0281
159 0.524
16 0.00914
160 0.533
161 0.7
162 0.369
163 0.614
164 0.174
165 0.752
166 0.305
167 0.54
168 0.946
169 0.0192
17 0.228
18 0.135
19 0.00428
2 0.302
20 0.602
21 0.283
22 0.223
23 0.237
24 0.131
25 0.43
26 0.266
27 0.441
28 0.264
29 0.658
3 0.4
30 0.679
31 0.475
32 1.12087e-16
33 0.727
34 0.88
35 0.624
36 0.0419
37 0.0784
38 0.749
39 0.293
4 0.96
40 0.59
41 0.944
42 0.386
43 0.191
44 0.0899
45 0.911
46 0.298
47 0.553
48 0.481
49 0.704
5 0.643
50 0.748
51 0.878
52 0.609
53 0.132
54 0.684
55 0.108
56 0.745
57 0.709
58 0.419
59 0.0338
6 0.514
60 0.504
61 0.785
62 0.803
63 0.279
64 0.776
65 0.388
66 0.244
67 0.551
68 0.334
69 0.414
7 0.411
70 0.296
71 0.271
72 0.731
73 0.00545
74 0.278
75 0.603
76 0.6
77 0.0323
78 0.834
79 0.00101
8 0.238
80 0.204
81 0.47
82 0.166
83 0.431
84 0.263
85 0.0319
86 0.468
87 0.116
88 0.816
89 0.0766
9 0.861
90 0.625
91 0.945
92 0.0745
93 0.39
94 0.907
95 0.187
96 0.942
97 0.659
98 0.941
99 0.0167



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs11971


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002334 (preadipocyte)
0002580 (preadipocyte of the breast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000310 (breast)
0002100 (trunk)
0002384 (connective tissue)
0000479 (tissue)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
0009569 (subdivision of trunk)
0001443 (chest)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000137 (human preadipocyte sample)
0000139 (human preadipocyte of the breast sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

CL:0000134 (mesenchymal cell)