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{{f5samples
 
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000483,UBERON:0000926,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000025,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0003914,UBERON:0002050,UBERON:0005423,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0005291,UBERON:0000487,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0004638,UBERON:0007500,UBERON:0006598,UBERON:0007798,UBERON:0004852,UBERON:0002532,UBERON:0001915,UBERON:0004535,UBERON:0001982,UBERON:0004537,UBERON:0003081,UBERON:0001009,UBERON:0006603,UBERON:0004872,UBERON:0006965
+
|DRA_sample_Accession=CAGE@SAMD00005962
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000548,CL:0000012,CL:0002321,CL:0000063,CL:0000066,CL:0002371,CL:0000076,CL:0000115,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000220,CL:0000004,CL:0000255,CL:0000071,CL:0000222,CL:0002144,CL:0002546
+
|accession_numbers=CAGE;DRX008227;DRR009099;DRZ000524;DRZ001909;DRZ011874;DRZ013259
 +
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0000487,UBERON:0004638,UBERON:0007500,UBERON:0001981,UBERON:0010523,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0001915,UBERON:0004535,UBERON:0001982,UBERON:0004537,UBERON:0001009
 +
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:0002144
 
|ancestors_in_disease_facet=
 
|ancestors_in_disease_facet=
 +
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000046,FF:0000001,FF:0000050
 
|comment=
 
|comment=
 
|created_by=
 
|created_by=
 
|creation_date=
 
|creation_date=
 +
|data_phase=2
 +
|datafreeze_phase=2
 
|def=
 
|def=
 
|expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.36!300.31!SOX18;;chr1:214161272..214161322,+!p1@PROX1!2.16!196.91!PROX1;;chr21:39870339..39870443,-!p1@ERG!2.08!120.12!ERG;;chr8:10588010..10588030,-!p1@SOX7!1.84!67.66!SOX7;;chr22:19748231..19748317,+!p1@TBX1!1.76!56.26!TBX1;;chr8:55370487..55370503,+!p1@SOX17!1.74!53.98!SOX17;;chr18:53068911..53068935,-!p4@TCF4!1.71!57.02!TCF4;;chr1:6479968..6479986,-!p1@HES2!1.62!41.05!HES2;;chr17:6926362..6926377,+!p1@BCL6B!1.60!38.77!BCL6B;;chr8:80679993..80680011,-!p1@HEY1!1.59!53.98!HEY1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.49!29.65!ZBED1;;chr2:177053386..177053402,+!p1@HOXD1!1.46!28.13!HOXD1;;chr12:96588368..96588394,+!p3@ELK3!1.41!65.38!ELK3;;chr17:46682321..46682362,-!p1@HOXB6!1.39!23.57!HOXB6;;chr6:34204921..34204939,+!p3@HMGA1!1.37!644.71!HMGA1;;chr17:46692457..46692484,-!p2@HOXB8!1.36!22.05!HOXB8;;chr17:46688334..46688385,-!p1@HOXB7!1.24!23.57!HOXB7;;chr17:46690839..46690884,-!p1@HOXB8!1.23!15.97!HOXB8;;chr10:94449703..94449718,+!p1@HHEX!1.20!57.02!HHEX;;chr1:47695003..47695042,-!p2@TAL1!1.17!13.68!TAL1;;chr5:88119580..88119602,-!p17@MEF2C!1.17!13.68!MEF2C;;chr2:176981499..176981522,+!p2@HOXD10!1.14!12.92!HOXD10;;chr19:13213511..13213545,-!p2@LYL1!1.09!12.16!LYL1;;chr17:46692624..46692659,-!p3@HOXB8!1.09!11.40!HOXB8;;chrX:103499602..103499617,-!p1@ESX1!1.09!11.40!ESX1;;chr19:46801639..46801699,+!p1@HIF3A!1.09!11.40!HIF3A;;chr10:35484053..35484076,+!p1@CREM!1.07!27.37!CREM;;chr8:80680024..80680046,-!p2@HEY1!1.07!12.16!HEY1;;chr12:80084137..80084165,-!p10@PAWR!1.06!13.68!PAWR;;chr18:53177984..53178004,-!p17@TCF4!1.04!9.88!TCF4;;chr19:13213399..13213414,-!p6@LYL1!1.04!9.88!LYL1;;chr10:31288370..31288393,-!p3@ZNF438!1.01!9.12!ZNF438;;chr2:176994919..176994931,+!p2@HOXD8!0.97!8.36!HOXD8;;chr20:50721803..50721857,-!p2@ZFP64!0.96!12.92!ZFP64;;chr17:1959369..1959388,+!p2@HIC1!0.95!21.29!HIC1;;chr11:47279504..47279563,+!p1@NR1H3!0.95!18.25!NR1H3;;chr18:22932080..22932170,-!p1@ZNF521!0.93!32.69!ZNF521;;chr17:46692603..46692621,-!p6@HOXB8!0.93!7.60!HOXB8;;chr2:176987463..176987479,+!p2@HOXD9!0.93!7.60!HOXD9;;chr2:176994408..176994492,+!p1@HOXD8!0.93!7.60!HOXD8;;chr19:13213662..13213686,-!p1@LYL1!0.91!10.64!LYL1;;chr5:88178983..88179012,-!p1@MEF2C!0.89!55.50!MEF2C;;chr14:75988771..75988826,+!p1@BATF!0.89!9.12!BATF;;chr14:74256787..74256858,-!p6@C14orf43!0.89!6.84!C14orf43;;chr9:16705069..16705086,-!p3@BNC2!0.89!6.84!BNC2;;chr1:23885981..23886002,-!p1@ID3!0.87!1194.39!ID3;;chr5:92918919..92918942,+!p1@NR2F1!0.87!30.41!NR2F1;;chr7:27183291..27183324,-!p1@HOXA5!0.85!6.08!HOXA5;;chr7:27196267..27196311,-!p1@HOXA7!0.85!6.08!HOXA7;;chr1:214161328..214161348,+!p2@PROX1!0.85!6.08!PROX1;;chrX:103499660..103499666,-!p2@ESX1!0.85!6.08!ESX1;;chr17:46688310..46688323,-!p4@HOXB7!0.85!6.08!HOXB7;;chr17:46692287..46692317,-!p7@HOXB8!0.85!6.08!HOXB8;;chr17:46692318..46692362,-!p5@HOXB8!0.85!6.08!HOXB8;;chr7:149470641..149470694,-!p1@ZNF467!0.83!28.13!ZNF467;;chr4:146403912..146403972,+!p5@SMAD1!0.83!7.60!SMAD1;;chr1:23886132..23886156,-!p2@ID3!0.80!6.08!ID3;;chr1:214161358..214161377,+!p3@PROX1!0.80!5.32!PROX1;;chr2:176981526..176981543,+!p3@HOXD10!0.80!5.32!HOXD10;;chr3:21792682..21792720,-!p1@ZNF385D!0.80!5.32!ZNF385D;;chr3:21792790..21792824,-!p4@ZNF385D!0.80!5.32!ZNF385D;;chr18:53068940..53068951,-!p21@TCF4!0.80!5.32!TCF4;;chr10:35484804..35484902,+!p2@CREM!0.79!21.29!CREM;;chr9:14083467..14083483,-!p4@NFIB!0.79!13.68!NFIB;;chr15:83953397..83953425,-!p1@BNC1!0.79!6.08!BNC1;;chr11:128563948..128564003,+!p1@FLI1!0.78!66.14!FLI1;;chr11:65430554..65430579,-!p3@RELA!0.78!13.68!RELA;;chr17:1958388..1958404,+!p1@HIC1!0.77!34.21!HIC1;;chr6:130339710..130339745,+!p1@L3MBTL3!0.76!41.81!L3MBTL3;;chr18:77155922..77155939,+!p1@NFATC1!0.75!13.68!NFATC1;;chr17:46691732..46691766,-!p4@HOXB8!0.75!4.56!HOXB8;;chr17:8027418..8027432,-!p1@HES7!0.75!4.56!HES7;;chr18:53068893..53068902,-!p28@TCF4!0.75!4.56!TCF4;;chr7:97840743..97840786,+!p1@BHLHA15!0.75!4.56!BHLHA15;;chr11:65429891..65429915,-!p7@RELA!0.75!4.56!RELA;;chr12:54394309..54394336,+!p2@HOXC9!0.75!4.56!HOXC9;;chr3:128206762..128206781,-!p2@GATA2!0.74!31.17!GATA2;;chr22:38597987..38598021,+!p2@MAFF!0.74!30.41!MAFF;;chr9:35732647..35732678,+!p2@CREB3!0.74!27.37!CREB3;;chr2:46524897..46524911,+!p2@EPAS1!0.74!13.68!EPAS1;;chr20:6748325..6748352,+!p1@BMP2!0.74!6.84!BMP2;;chr1:221052994..221053008,+!p6@HLX!0.73!5.32!HLX;;chr2:46524537..46524553,+!p1@EPAS1!0.72!478.21!EPAS1;;chr9:14314131..14314147,-!p2@NFIB!0.72!26.61!NFIB;;chr19:49865646..49865718,-!p1@TEAD2!0.71!39.53!TEAD2;;chr18:53257001..53257015,-!p5@TCF4!0.71!7.60!TCF4;;chr9:35732514..35732530,+!p5@CREB3!0.71!6.08!CREB3;;chr5:92918956..92918969,+!p4@NR2F1!0.71!4.56!NR2F1;;chr18:52989565..52989623,-!p9@TCF4!0.70!5.32!TCF4;;chr17:41622925..41622976,-!p3@ETV4!0.69!6.08!ETV4;;chr1:221052733..221052749,+!p2@HLX!0.69!5.32!HLX;;chr16:79634624..79634642,-!p1@MAF!0.68!16.73!MAF;;chr11:65430535..65430549,-!p4@RELA!0.68!4.56!RELA;;chr17:6926381..6926392,+!p2@BCL6B!0.68!3.80!BCL6B;;chr18:53068982..53068993,-!p20@TCF4!0.68!3.80!TCF4;;chr19:13213465..13213478,-!p7@LYL1!0.68!3.80!LYL1;;chr6:28321971..28321995,-!p1@ZNF323!0.68!3.80!ZNF323;;chr7:27142290..27142310,-!p1@HOXA2!0.68!3.80!HOXA2;;chr7:27153454..27153469,-!p2@HOXA3!0.68!3.80!HOXA3;;chr7:27169801..27169844,-!p2@HOXA4!0.68!3.80!HOXA4;;chr7:27192185..27192209,-!p1@HOXA3!0.68!3.80!HOXA3;;chr7:27205106..27205134,-!p2@HOXA9!0.68!3.80!HOXA9;;chr7:27224842..27224872,-!p1@HOXA11!0.68!3.80!HOXA11;;chr2:176987441..176987454,+!p1@HOXD9!0.68!3.80!HOXD9;;chr2:177001290..177001315,+!p1@HOXD3!0.68!3.80!HOXD3;;chr15:96874244..96874259,+!p5@NR2F2!0.67!9.88!NR2F2;;chr11:65686802..65686818,+!p6@DRAP1!0.67!6.84!DRAP1;;chr19:53496768..53496799,-!p1@ZNF702P!0.67!6.08!ZNF702P;;chr20:30193083..30193098,+!p1@ID1!0.66!334.52!ID1;;chr10:94449675..94449694,+!p2@HHEX!0.66!10.64!HHEX;;chr1:221052776..221052799,+!p1@HLX!0.65!6.84!HLX;;chr1:156470494..156470505,-!p3@MEF2D!0.65!5.32!MEF2D;;chr8:106330696..106330719,+!p2@ZFPM2!0.65!4.56!ZFPM2;;chr17:41623692..41623715,-!p1@ETV4!0.64!16.73!ETV4;;chr8:106330656..106330684,+!p1@ZFPM2!0.64!9.88!ZFPM2;;chr12:27485785..27485816,+!p1@ARNTL2!0.63!26.61!ARNTL2;;chr12:53614115..53614154,-!p1@RARG!0.63!20.53!RARG;;chr11:65687362..65687436,+!p3@DRAP1!0.62!16.73!DRAP1;;chr11:65667884..65667895,-!p2@FOSL1!0.62!14.45!FOSL1;;chr10:31288398..31288455,-!p2@ZNF438!0.62!3.80!ZNF438;;chr3:141087393..141087426,+!p3@ZBTB38!0.61!14.45!ZBTB38;;chr15:77713299..77713316,+!p3@HMG20A!0.61!5.32!HMG20A;;chr14:75988831..75988847,+!p2@BATF!0.61!3.04!BATF;;chr17:46655672..46655697,-!p3@HOXB4!0.61!3.04!HOXB4;;chr17:46675558..46675577,-!p2@HOXB6!0.61!3.04!HOXB6;;chr17:46692198..46692237,-!p12@HOXB8!0.61!3.04!HOXB8;;chr5:92918768..92918783,+!p8@NR2F1!0.61!3.04!NR2F1;;chr7:27170359..27170381,-!p1@HOXA4!0.61!3.04!HOXA4;;chr7:99680193..99680204,-!p2@ZNF3!0.61!3.04!ZNF3;;chr11:128562372..128562397,+!p4@FLI1!0.61!3.04!FLI1;;chr1:47697539..47697573,-!p3@TAL1!0.61!3.04!TAL1;;chr20:62679771..62679782,-!p4@SOX18!0.61!3.04!SOX18;;chr9:14083091..14083096,-!p12@NFIB!0.61!3.04!NFIB;;chr17:3571863..3571881,-!p1@TAX1BP3!0.60!258.49!TAX1BP3;;chr6:21593973..21593988,+!p1@SOX4!0.60!131.53!SOX4;;chr3:168864315..168864339,-!p2@MECOM!0.60!5.32!MECOM;;chr9:14082760..14082775,-!p6@NFIB!0.60!5.32!NFIB;;chr6:85473156..85473210,-!p2@TBX18!0.60!3.80!TBX18;;chr12:7079780..7079791,-!p2@PHB2!0.59!18.25!PHB2;;chr22:41697497..41697515,+!p2@ZC3H7B!0.59!9.12!ZC3H7B;;chr6:21597600..21597664,+!p3@SOX4!0.59!5.32!SOX4;;chr3:178789522..178789564,-!p2@ZMAT3!0.58!25.09!ZMAT3;;chr19:45504688..45504782,+!p1@RELB!0.58!20.53!RELB;;chr7:148892557..148892580,+!p4@ZNF282!0.58!9.12!ZNF282;;chr16:79633894..79633954,-!p3@MAF!0.58!6.08!MAF;;chr22:41697484..41697496,+!p3@ZC3H7B!0.58!3.80!ZC3H7B;;chr9:14314566..14314618,-!p1@NFIB!0.57!40.29!NFIB;;chr19:36134528..36134563,+!p1@ETV2!0.57!9.12!ETV2;;chr6:134273586..134273611,+!p5@TBPL1!0.57!3.04!TBPL1;;chr7:26191809..26191890,+!p1@NFE2L3!0.56!15.97!NFE2L3;;chr17:4890695..4890773,-!p2@CAMTA2!0.56!9.88!CAMTA2;;chr15:90544532..90544563,+!p1@ZNF710!0.56!6.08!ZNF710;;chr12:53574398..53574412,+!p3@ZNF740!0.56!5.32!ZNF740;;chr16:31454084..31454115,-!p1@ZNF843!0.56!3.04!ZNF843;;chr2:28616471..28616478,+!p7@FOSL2!0.56!3.04!FOSL2;;chr1:151032860..151032918,+!p1@MLLT11!0.55!38.01!MLLT11;;chr12:3069037..3069119,+!p2@TEAD4!0.55!10.64!TEAD4;;chr16:79634595..79634620,-!p2@MAF!0.55!5.32!MAF;;chr17:46687959..46688007,-!p2@HOXB7!0.55!3.80!HOXB7;;chr11:47237922..47237964,+!p4@DDB2!0.55!3.04!DDB2;;chr6:34204672..34204692,+!p1@HMGA1!0.54!357.33!HMGA1;;chr4:2263809..2263854,-!p1@MXD4!0.54!121.64!MXD4;;chr15:96874012..96874042,+!p2@NR2F2!0.54!28.13!NR2F2;;chr13:41240717..41240735,-!p2@FOXO1!0.54!21.29!FOXO1;;chr5:92918894..92918912,+!p2@NR2F1!0.54!9.88!NR2F1;;chr10:44144264..44144286,-!p2@ZNF32!0.54!6.08!ZNF32;;chr8:42698494..42698507,-!p3@THAP1!0.54!5.32!THAP1;;chr12:3068544..3068597,+!p1@TEAD4!0.53!18.25!TEAD4;;chr7:27135591..27135658,-!p1@HOXA1!0.53!5.32!HOXA1;;chr17:41622834..41622883,-!p6@ETV4!0.53!3.04!ETV4;;chr4:2263861..2263883,-!p2@MXD4!0.52!17.49!MXD4;;chr5:88179017..88179046,-!p2@MEF2C!0.52!11.40!MEF2C;;chr16:86600426..86600441,+!p1@FOXC2!0.52!6.84!FOXC2;;chr4:146402843..146402864,+!p3@SMAD1!0.52!5.32!SMAD1;;chr10:104155659..104155676,+!p4@NFKB2!0.52!3.04!NFKB2;;chr10:31288329..31288353,-!p7@ZNF438!0.52!2.28!ZNF438;;chr10:31607811..31607837,+!p6@ZEB1!0.52!2.28!ZEB1;;chr12:80083991..80084002,-!p40@PAWR!0.52!2.28!PAWR;;chr12:80084018..80084035,-!p17@PAWR!0.52!2.28!PAWR;;chr12:80084120..80084136,-!p15@PAWR!0.52!2.28!PAWR;;chr17:46691990..46692004,-!p11@HOXB8!0.52!2.28!HOXB8;;chr17:46692582..46692589,-!p14@HOXB8!0.52!2.28!HOXB8;;chr18:52894476..52894484,-!p41@TCF4!0.52!2.28!TCF4;;chr5:172662197..172662216,-!p1@NKX2-5!0.52!2.28!NKX2-5;;chr5:92918789..92918800,+!p12@NR2F1!0.52!2.28!NR2F1;;chr7:27170274..27170308,-!p3@HOXA4!0.52!2.28!HOXA4;;chr7:27195867..27195893,-!p3@HOXA7!0.52!2.28!HOXA7;;chr7:27205136..27205164,-!p1@HOXA9!0.52!2.28!HOXA9;;chr8:102216978..102217003,-!p4@ZN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 +
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000071;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000115;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002139;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002144;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000487;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006914;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798
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|ffid_belonging_in_development=CL:0002546,CL:0000222
 
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Line 35: Line 42:
 
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|has_quality=
 
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|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Microvascular%252c%2520donor2.CNhs11376.11342-117G1.hg19.nobarcode.bam
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Microvascular%252c%2520donor2.CNhs11376.11342-117G1.hg19.ctss.bed.gz
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|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Microvascular%252c%2520donor2.CNhs11376.11342-117G1.hg38.nobarcode.bam
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|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Microvascular%252c%2520donor2.CNhs11376.11342-117G1.hg38.nobarcode.ctss.bed.gz
 
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|is_obsolete=
 +
|library_id=CNhs11376
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|library_id_phase_based=2:CNhs11376
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|microRNAs_nn=
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|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11342
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|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11342
 
|name=Endothelial Cells - Microvascular, donor2
 
|name=Endothelial Cells - Microvascular, donor2
 
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Line 43: Line 61:
 
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 +
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|rna_box=117
 
|rna_box=117
 
|rna_catalog_number=CA100-R10a
 
|rna_catalog_number=CA100-R10a
Line 58: Line 79:
 
|rna_weight_ug=10
 
|rna_weight_ug=10
 
|sample_age=47
 
|sample_age=47
 +
|sample_category=primary cells
 
|sample_cell_catalog=N/A
 
|sample_cell_catalog=N/A
 
|sample_cell_line=
 
|sample_cell_line=

Latest revision as of 11:19, 10 August 2017

Name:Endothelial Cells - Microvascular, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11376
Sample type:primary cells
Genomic View: UCSC
MicroRNAs:Including candidate novel miRNAs(CAGE samples)
Excluding candidate novel miRNAs(CAGE samples)
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissuecapillary
dev stage47 years old adult
sexfemale
age47
cell typeblood vessel endothelial cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1941
catalog numberCA100-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

Accession numbers
MethodSample accession id
CAGE  SAMD00005962
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11376 CAGE DRX008227 DRR009099
Accession ID Hg19

Library idBAMCTSS
CNhs11376 DRZ000524 DRZ001909
Accession ID Hg38

Library idBAMCTSS
CNhs11376 DRZ011874 DRZ013259
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis--0.169
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma--0.0876
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen1.113
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.516
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19--0.261
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle--0.311
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.466
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.395
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.43
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small--0.0565
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.516
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11376

Jaspar motif P-value
MA0002.2 0.794
MA0003.1 0.325
MA0004.1 0.578
MA0006.1 0.108
MA0007.1 0.0992
MA0009.1 0.607
MA0014.1 0.293
MA0017.1 0.11
MA0018.2 0.00942
MA0019.1 0.194
MA0024.1 0.0166
MA0025.1 0.376
MA0027.1 0.968
MA0028.1 0.634
MA0029.1 0.929
MA0030.1 0.791
MA0031.1 0.571
MA0035.2 0.00646
MA0038.1 0.194
MA0039.2 0.183
MA0040.1 0.116
MA0041.1 0.199
MA0042.1 0.558
MA0043.1 4.74083e-6
MA0046.1 0.352
MA0047.2 0.207
MA0048.1 0.487
MA0050.1 0.0253
MA0051.1 0.912
MA0052.1 0.867
MA0055.1 0.0626
MA0057.1 0.736
MA0058.1 0.441
MA0059.1 0.164
MA0060.1 0.464
MA0061.1 0.237
MA0062.2 0.755
MA0065.2 0.0297
MA0066.1 0.342
MA0067.1 0.141
MA0068.1 0.844
MA0069.1 0.464
MA0070.1 0.184
MA0071.1 0.292
MA0072.1 0.194
MA0073.1 0.323
MA0074.1 0.857
MA0076.1 0.106
MA0077.1 7.82093e-5
MA0078.1 0.00333
MA0079.2 0.792
MA0080.2 0.00333
MA0081.1 0.11
MA0083.1 0.249
MA0084.1 0.257
MA0087.1 0.0572
MA0088.1 0.18
MA0090.1 0.653
MA0091.1 0.971
MA0092.1 0.145
MA0093.1 0.661
MA0099.2 1.81634e-8
MA0100.1 0.135
MA0101.1 0.0212
MA0102.2 3.16344e-4
MA0103.1 0.591
MA0104.2 0.96
MA0105.1 0.0977
MA0106.1 0.0123
MA0107.1 0.0126
MA0108.2 0.107
MA0111.1 0.974
MA0112.2 0.0323
MA0113.1 0.807
MA0114.1 0.172
MA0115.1 0.999
MA0116.1 0.184
MA0117.1 0.103
MA0119.1 0.008
MA0122.1 0.0676
MA0124.1 0.519
MA0125.1 0.793
MA0131.1 0.373
MA0135.1 0.545
MA0136.1 0.00381
MA0137.2 0.305
MA0138.2 0.134
MA0139.1 0.251
MA0140.1 0.00379
MA0141.1 0.0907
MA0142.1 0.875
MA0143.1 0.985
MA0144.1 0.381
MA0145.1 0.0574
MA0146.1 0.335
MA0147.1 0.766
MA0148.1 0.0513
MA0149.1 0.0583
MA0150.1 0.0181
MA0152.1 0.843
MA0153.1 0.483
MA0154.1 0.12
MA0155.1 0.115
MA0156.1 0.0066
MA0157.1 0.67
MA0159.1 0.08
MA0160.1 0.276
MA0162.1 0.0877
MA0163.1 0.139
MA0164.1 0.606
MA0258.1 0.165
MA0259.1 0.876



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11376

Novel motif P-value
1 0.0277
10 0.987
100 0.274
101 0.152
102 0.752
103 0.682
104 0.768
105 0.672
106 0.143
107 0.0647
108 0.528
109 0.0798
11 0.0423
110 0.0531
111 0.152
112 0.45
113 0.664
114 0.0959
115 0.363
116 0.529
117 0.436
118 0.491
119 0.111
12 0.781
120 0.0519
121 0.336
122 0.215
123 0.484
124 0.236
125 0.173
126 0.287
127 0.52
128 0.448
129 0.186
13 0.148
130 0.911
131 0.988
132 0.437
133 0.229
134 0.863
135 0.00758
136 0.294
137 0.521
138 0.674
139 0.257
14 0.673
140 0.548
141 0.354
142 0.685
143 0.133
144 0.691
145 0.115
146 0.0728
147 0.0894
148 0.852
149 0.0671
15 0.239
150 0.256
151 0.374
152 0.0318
153 0.684
154 0.15
155 0.871
156 0.181
157 0.288
158 0.578
159 0.234
16 0.272
160 0.0893
161 0.475
162 0.948
163 0.624
164 0.117
165 0.908
166 0.362
167 0.285
168 0.852
169 0.0209
17 0.2
18 0.145
19 0.168
2 0.809
20 0.878
21 0.8
22 0.128
23 0.315
24 0.367
25 0.833
26 0.328
27 0.119
28 0.251
29 0.373
3 0.343
30 0.774
31 0.648
32 0.885
33 0.0517
34 0.449
35 0.813
36 0.00265
37 0.0765
38 0.0952
39 0.836
4 0.877
40 0.00217
41 0.105
42 0.565
43 0.373
44 0.273
45 0.327
46 0.049
47 0.111
48 0.0552
49 0.433
5 0.259
50 0.721
51 0.245
52 0.673
53 0.885
54 0.569
55 0.594
56 0.621
57 0.111
58 0.788
59 0.0728
6 0.423
60 0.94
61 0.995
62 0.94
63 0.298
64 0.186
65 0.144
66 0.423
67 0.325
68 0.455
69 0.671
7 0.234
70 0.0467
71 0.201
72 0.923
73 0.00428
74 0.966
75 0.152
76 0.673
77 0.297
78 0.228
79 0.569
8 0.00739
80 0.705
81 0.981
82 0.322
83 0.841
84 0.115
85 0.206
86 0.926
87 0.0537
88 0.976
89 0.174
9 0.494
90 0.545
91 0.827
92 0.226
93 0.994
94 0.796
95 0.0822
96 0.254
97 0.382
98 0.0579
99 0.0152



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs11376


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
0002144 (capillary endothelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel), Test (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0000487 (simple squamous epithelium)
0004638 (blood vessel endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0010523 (microcirculatory vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0001915 (endothelium of capillary)
0004535 (cardiovascular system)
0001982 (capillary)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000001 (sample)
0000050 (human microvascular endothelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)