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(Created page with "{{f5samples |id=FF:11380-118B3 |name=Fibroblast - Periodontal Ligament, donor6 (PLH3) |sample_id=11380 |rna_tube_id=118B3 |rna_box=118 |rna_position=B3 |sample_cell_lot...")
 
 
(30 intermediate revisions by the same user not shown)
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{{f5samples
 
{{f5samples
|id=FF:11380-118B3
+
|DRA_sample_Accession=CAGE@SAMD00005628
|name=Fibroblast - Periodontal Ligament, donor6 (PLH3)
+
|accession_numbers=CAGE;DRX008279;DRR009151;DRZ000576;DRZ001961;DRZ011926;DRZ013311
|sample_id=11380
+
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0004121,UBERON:0004119,UBERON:0010314,UBERON:0011216,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000075,UBERON:0010317,UBERON:0001555,UBERON:0001758,UBERON:0000153,UBERON:0007811,UBERON:0002204,UBERON:0001434,UBERON:0000165,UBERON:0003672,UBERON:0011137,UBERON:0010323,UBERON:0003129
|rna_tube_id=118B3
+
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002556
|rna_box=118
 
|rna_position=B3
 
|sample_cell_lot=N/A
 
|sample_cell_catalog=N/A
 
|sample_company=N/A
 
|rna_lot_number=
 
|rna_catalog_number=N/A
 
|sample_species=Human (Homo sapiens)
 
|sample_strain=
 
|sample_dev_stage=22 years old adult
 
|sample_tissue=periodontal ligament
 
|sample_donor(cell lot)=
 
|sample_sex=male
 
|sample_age=22
 
|sample_ethnicity=A
 
|rna_rin=8.80000
 
|rna_od260/230=1.75000
 
|rna_od260/280=2.05333
 
|sample_cell_type=fibroblast
 
|sample_cell_line=
 
|sample_collaboration=Mitsuhiro Ohshima (Nihon University School of Dentistry)
 
|sample_experimental_condition=
 
|sample_disease=
 
|rna_sample_type=total RNA
 
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
 
|rna_weight_ug=18.98380
 
|rna_concentration=0.86300
 
|sample_note=
 
|profile_hcage=CNhs11996,LSID837,release011,COMPLETED
 
|profile_cagescan=,,,
 
|profile_srnaseq=,,,
 
|profile_rnaseq=,,,
 
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371,CL:0002556
 
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000479,UBERON:0001062,UBERON:0001758,UBERON:0002384,UBERON:0003672
 
 
|ancestors_in_disease_facet=
 
|ancestors_in_disease_facet=
|sample_description=
+
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000067
 
+
|comment=
 +
|created_by=
 +
|creation_date=
 +
|data_phase=2
 +
|datafreeze_phase=2
 +
|def=
 +
|expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!2.30!224.31!PRRX1;;chr6:134210243..134210257,+!p1@TCF21!2.08!118.84!TCF21;;chr10:28034739..28034756,-!p1@MKX!1.98!95.25!MKX;;chr1:170633348..170633399,+!p2@PRRX1!1.92!109.52!PRRX1;;chr9:132427883..132427951,+!p2@PRRX2!1.87!73.02!PRRX2;;chr16:86544113..86544145,+!p1@FOXF1!1.84!83.53!FOXF1;;chr9:132427972..132428056,+!p1@PRRX2!1.78!76.17!PRRX2;;chr7:19157248..19157268,-!p1@TWIST1!1.71!134.91!TWIST1;;chr1:170632477..170632506,+!p6@PRRX1!1.58!36.81!PRRX1;;chr6:1389789..1389821,+!p1@FOXF2!1.56!47.63!FOXF2;;chr1:170633262..170633285,+!p3@PRRX1!1.55!39.51!PRRX1;;chr17:59477233..59477263,+!p1@TBX2!1.49!90.74!TBX2;;chr2:19558373..19558392,-!p1@OSR1!1.48!78.42!OSR1;;chr2:200322654..200322707,-!p2@SATB2!1.48!41.92!SATB2;;chr4:4861385..4861398,+!p1@MSX1!1.44!75.87!MSX1;;chr1:40105299..40105326,-!p1@HEYL!1.44!26.44!HEYL;;chr11:46299199..46299233,+!p1@CREB3L1!1.42!126.95!CREB3L1;;chr14:61116183..61116208,-!p1@SIX1!1.40!89.69!SIX1;;chr1:170632439..170632465,+!p11@PRRX1!1.40!23.89!PRRX1;;chr2:45236540..45236577,-!p1@SIX2!1.38!22.84!SIX2;;chr2:46524537..46524553,+!p1@EPAS1!1.35!2002.52!EPAS1;;chr9:96717629..96717644,-!p1@BARX1!1.31!19.38!BARX1;;chr20:55204351..55204377,+!p1@TFAP2C!1.30!24.04!TFAP2C;;chr1:170632137..170632172,+!p10@PRRX1!1.30!18.93!PRRX1;;chr9:102584159..102584174,+!p2@NR4A3!1.29!32.75!NR4A3;;chr17:59477275..59477286,+!p3@TBX2!1.29!24.34!TBX2;;chr1:170632959..170632987,+!p4@PRRX1!1.27!19.23!PRRX1;;chr2:157189180..157189290,-!p1@NR4A2!1.26!87.14!NR4A2;;chr9:102584262..102584276,+!p1@NR4A3!1.26!38.31!NR4A3;;chr7:44143925..44143970,+!p1@AEBP1!1.23!348.25!AEBP1;;chr7:19157043..19157088,-!p2@TWIST1!1.21!38.01!TWIST1;;chr8:72756667..72756736,-!p2@MSC!1.20!23.29!MSC;;chr1:170633058..170633084,+!p5@PRRX1!1.18!14.12!PRRX1;;chr11:46299539..46299620,+!p2@CREB3L1!1.17!23.14!CREB3L1;;chr1:170632250..170632277,+!p7@PRRX1!1.17!13.67!PRRX1;;chr7:96654133..96654150,-!p1@DLX5!1.17!13.67!DLX5;;chr2:200323414..200323455,-!p1@SATB2!1.15!28.09!SATB2;;chr6:45296048..45296082,+!p1@RUNX2!1.15!15.17!RUNX2;;chr17:59477197..59477212,+!p2@TBX2!1.13!21.78!TBX2;;chr2:239756671..239756732,+!p1@TWIST2!1.12!39.51!TWIST2;;chr1:170632115..170632136,+!p9@PRRX1!1.12!12.32!PRRX1;;chr1:170632310..170632321,+!p15@PRRX1!1.11!12.02!PRRX1;;chr15:57511609..57511651,+!p2@TCF12!1.10!19.38!TCF12;;chr10:131762504..131762555,-!p1@EBF3!1.10!11.72!EBF3;;chr6:1389989..1390019,+!p2@FOXF2!1.10!11.57!FOXF2;;chr8:72756267..72756296,-!p4@MSC!1.09!16.83!MSC;;chr9:77112244..77112262,+!p1@RORB!1.09!12.62!RORB;;chr8:25902876..25902936,-!p1@EBF2!1.09!11.27!EBF2;;chr11:34642612..34642646,+!p1@EHF!1.09!11.27!EHF;;chr7:44143978..44143989,+!p2@AEBP1!1.08!20.28!AEBP1;;chr12:52445218..52445237,+!p1@NR4A1!1.06!131.91!NR4A1;;chr8:72756637..72756664,-!p3@MSC!1.06!11.87!MSC;;chr14:37131058..37131139,+!p1@PAX9!1.06!10.52!PAX9;;chr14:24837368..24837401,+!p1@NFATC4!1.04!23.89!NFATC4;;chr2:239756739..239756755,+!p2@TWIST2!1.04!17.13!TWIST2;;chr1:75602043..75602093,+!p1@LHX8!1.04!9.92!LHX8;;chr16:86600426..86600441,+!p1@FOXC2!1.02!23.74!FOXC2;;chr1:170632762..170632786,+!p13@PRRX1!1.02!9.46!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!1.01!9.16!PRRX1;;chr1:75600067..75600094,+!p2@LHX8!0.99!8.86!LHX8;;chr1:170632723..170632739,+!p8@PRRX1!0.99!8.71!PRRX1;;chr7:17338266..17338282,+!p1@AHR!0.97!92.70!AHR;;chr5:321810..321877,+!p1@AHRR!0.97!27.19!AHRR;;chr13:45151259..45151326,-!p2@TSC22D1!0.96!50.03!TSC22D1;;chr5:72744594..72744609,-!p1@FOXD1!0.93!35.61!FOXD1;;chr8:72756213..72756243,-!p5@MSC!0.93!9.77!MSC;;chr7:44143997..44144008,+!p3@AEBP1!0.93!9.62!AEBP1;;chr6:1389824..1389840,+!p3@FOXF2!0.92!7.36!FOXF2;;chr6:19837592..19837621,+!p1@ID4!0.91!45.22!ID4;;chr12:80085061..80085119,-!p6@PAWR!0.91!11.72!PAWR;;chr5:2751762..2751784,-!p1@IRX2!0.91!7.21!IRX2;;chrY:2803415..2803468,+!p1@ZFY!0.90!6.91!ZFY;;chr12:53614115..53614154,-!p1@RARG!0.89!37.71!RARG;;chr9:102584241..102584261,+!p4@NR4A3!0.88!10.52!NR4A3;;chr18:22932080..22932170,-!p1@ZNF521!0.87!28.85!ZNF521;;chr2:45236579..45236596,-!p2@SIX2!0.86!6.31!SIX2;;chr6:1312325..1312340,+!p1@FOXQ1!0.84!10.07!FOXQ1;;chrY:21906594..21906622,-!p1@KDM5D!0.84!5.86!KDM5D;;chr2:191878874..191878938,-!p1@STAT1!0.83!332.93!STAT1;;chr8:72756063..72756125,-!p1@MSC!0.83!12.32!MSC;;chr10:28035112..28035130,-!p5@MKX!0.83!5.71!MKX;;chr2:172949484..172949522,+!p1@DLX1!0.83!5.71!DLX1;;chr7:17338239..17338262,+!p2@AHR!0.82!44.32!AHR;;chr7:17338324..17338341,+!p3@AHR!0.82!19.83!AHR;;chr9:102584278..102584285,+!p5@NR4A3!0.82!5.56!NR4A3;;chr2:119604456..119604501,-!p2@EN1!0.80!5.26!EN1;;chr12:115122318..115122331,-!p2@TBX3!0.80!5.26!TBX3;;chr12:53625966..53626012,-!p2@RARG!0.79!14.42!RARG;;chr2:95963052..95963106,+!p1@KCNIP3!0.79!5.11!KCNIP3;;chr9:73029219..73029289,-!p2@KLF9!0.78!16.23!KLF9;;chr8:99956662..99956684,+!p1@OSR2!0.78!8.11!OSR2;;chr2:172950227..172950249,+!p2@DLX1!0.78!4.96!DLX1;;chr1:170633194..170633205,+!p18@PRRX1!0.78!4.96!PRRX1;;chr12:66218598..66218645,+!p2@HMGA2!0.77!24.79!HMGA2;;chr2:145277882..145277967,-!p3@ZEB2!0.77!8.86!ZEB2;;chr11:65687222..65687240,+!p7@DRAP1!0.77!6.46!DRAP1;;chr5:72744445..72744466,-!p2@FOXD1!0.76!8.26!FOXD1;;chr10:28032421..28032494,-!p2@MKX!0.76!4.81!MKX;;chr13:45150455..45150472,-!p8@TSC22D1!0.76!4.81!TSC22D1;;chr1:170632325..170632339,+!p24@PRRX1!0.76!4.81!PRRX1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.75!4.96!GLIS1;;chr7:96654026..96654061,-!p2@DLX5!0.75!4.66!DLX5;;chr10:28034772..28034783,-!p4@MKX!0.75!4.66!MKX;;chr12:52437488..52437507,+!p2@NR4A1!0.75!4.66!NR4A1;;chr11:12696002..12696022,+!p2@TEAD1!0.74!11.87!TEAD1;;chr9:102584128..102584144,+!p3@NR4A3!0.74!9.16!NR4A3;;chr3:141105705..141105770,+!p4@ZBTB38!0.74!5.56!ZBTB38;;chr1:170633245..170633256,+!p14@PRRX1!0.74!4.51!PRRX1;;chr11:46299443..46299459,+!p4@CREB3L1!0.74!4.51!CREB3L1;;chr11:65687362..65687436,+!p3@DRAP1!0.73!21.78!DRAP1;;chr12:66218255..66218304,+!p3@HMGA2!0.73!12.62!HMGA2;;chr11:615570..615721,-!p2@IRF7!0.73!9.31!IRF7;;chr5:134369905..134369972,-!p1@PITX1!0.73!7.06!PITX1;;chr2:191878812..191878823,-!p2@STAT1!0.73!5.71!STAT1;;chr14:95236440..95236465,-!p1@GSC!0.73!4.36!GSC;;chr8:48650715..48650735,-!p1@CEBPD!0.72!608.76!CEBPD;;chr9:4300050..4300118,-!p1@GLIS3!0.72!30.95!GLIS3;;chr16:79634624..79634642,-!p1@MAF!0.72!18.33!MAF;;chr10:28035133..28035148,-!p3@MKX!0.72!4.21!MKX;;chr1:170632028..170632043,+!p20@PRRX1!0.72!4.21!PRRX1;;chr2:145275162..145275202,-!p2@ZEB2!0.71!27.64!ZEB2;;chr11:65686732..65686756,+!p2@DRAP1!0.71!19.38!DRAP1;;chr2:46602879..46602899,+!p8@EPAS1!0.71!5.11!EPAS1;;chr7:44143738..44143760,+!p4@AEBP1!0.71!4.81!AEBP1;;chr22:38598086..38598105,+!p1@MAFF!0.70!48.68!MAFF;;chr9:73028814..73028895,-!p1@KLF9!0.70!45.07!KLF9;;chr11:12696071..12696086,+!p3@TEAD1!0.70!5.56!TEAD1;;chr10:28035155..28035166,-!p8@MKX!0.70!4.06!MKX;;chr1:170632414..170632421,+!p28@PRRX1!0.70!4.06!PRRX1;;chr14:62162285..62162296,+!p3@HIF1A!0.69!23.14!HIF1A;;chr2:192015701..192015743,-!p1@STAT4!0.69!5.56!STAT4;;chr2:46602901..46602926,+!p7@EPAS1!0.69!5.41!EPAS1;;chr8:72756380..72756427,-!p8@MSC!0.69!3.91!MSC;;chr11:65667884..65667895,-!p2@FOSL1!0.68!16.68!FOSL1;;chr13:45151403..45151433,-!p5@TSC22D1!0.68!9.01!TSC22D1;;chr16:54320158..54320200,-!p5@IRX3!0.68!5.71!IRX3;;chr8:60031934..60031986,-!p6@TOX!0.68!3.76!TOX;;chr2:172967242..172967265,-!p2@DLX2!0.68!3.76!DLX2;;chr1:170632647..170632659,+!p17@PRRX1!0.68!3.76!PRRX1;;chr1:25291475..25291511,-!p2@RUNX3!0.68!3.76!RUNX3;;chr9:96717678..96717689,-!p2@BARX1!0.68!3.76!BARX1;;chr6:34204921..34204939,+!p3@HMGA1!0.67!128.45!HMGA1;;chr1:200379104..200379128,-!p2@ZNF281!0.67!9.92!ZNF281;;chr16:79633894..79633954,-!p3@MAF!0.67!7.66!MAF;;chr10:63809106..63809127,+!p1@ARID5B!0.66!56.19!ARID5B;;chr14:62162258..62162269,+!p2@HIF1A!0.66!39.66!HIF1A;;chr12:53625846..53625861,-!p6@RARG!0.66!3.61!RARG;;chr1:170632051..170632081,+!p16@PRRX1!0.66!3.61!PRRX1;;chr1:170632867..170632878,+!p21@PRRX1!0.66!3.61!PRRX1;;chr1:170633294..170633303,+!p23@PRRX1!0.66!3.61!PRRX1;;chr2:200322229..200322251,-!p3@SATB2!0.66!3.61!SATB2;;chr17:59477266..59477273,+!p6@TBX2!0.66!3.61!TBX2;;chr11:65686802..65686818,+!p6@DRAP1!0.65!6.61!DRAP1;;chr14:61116168..61116180,-!p2@SIX1!0.65!4.06!SIX1;;chr19:45504688..45504782,+!p1@RELB!0.64!23.89!RELB;;chr16:54964740..54964789,+!p1@IRX5!0.64!5.11!IRX5;;chr14:21566731..21566836,-!p1@ZNF219!0.63!41.77!ZNF219;;chr11:65687158..65687216,+!p4@DRAP1!0.63!21.93!DRAP1;;chr10:63809013..63809041,+!p3@ARID5B!0.63!21.33!ARID5B;;chr1:8763440..8763460,-!p2@RERE!0.63!19.23!RERE;;chr15:83953397..83953425,-!p1@BNC1!0.63!3.91!BNC1;;chr3:157823517..157823562,-!p1@SHOX2!0.63!3.61!SHOX2;;chr1:170632583..170632590,+!p26@PRRX1!0.63!3.31!PRRX1;;chr12:80085120..80085156,-!p14@PAWR!0.62!3.15!PAWR;;chr8:72756251..72756262,-!p12@MSC!0.62!3.15!MSC;;chr2:145277640..145277771,-!p1@ZEB2!0.61!49.58!ZEB2;;chr5:158526917..158526932,-!p1@EBF1!0.61!8.71!EBF1;;chr2:28618532..28618610,+!p4@FOSL2!0.61!5.71!FOSL2;;chr3:141121847..141121868,+!p5@ZBTB38!0.61!5.11!ZBTB38;;chr19:33865009..33865090,+!p3@CEBPG!0.61!4.36!CEBPG;;chr3:178789522..178789564,-!p2@ZMAT3!0.60!26.44!ZMAT3;;chr19:36545128..36545203,-!p1@THAP8!0.60!16.53!THAP8;;chr7:28448965..28448994,+!p2@CREB5!0.60!12.17!CREB5;;chr10:31607702..31607755,+!p3@ZEB1!0.60!3.61!ZEB1;;chr5:3595977..3595999,+!p1@IRX1!0.60!3.00!IRX1;;chr14:75894714..75894733,+!p1@JDP2!0.59!99.46!JDP2;;chr3:71114066..71114114,-!p1@FOXP1!0.59!71.96!FOXP1;;chr5:174151553..174151610,+!p1@MSX2!0.59!5.26!MSX2;;chr5:3595934..3595957,+!p2@IRX1!0.59!2.85!IRX1;;chr14:37126765..37126799,+!p2@PAX9!0.59!2.85!PAX9;;chr12:52430894..52430952,+!p3@NR4A1!0.58!6.01!NR4A1;;chr17:46126136..46126152,+!p1@NFE2L1!0.57!175.63!NFE2L1;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.57!33.20!GLIS2;;chr17:17726907..17726958,-!p2@SREBF1!0.57!20.28!SREBF1;;chr17:46132044..46132080,+!p4@NFE2L1!0.57!2.70!NFE2L1;;chr2:119605214..119605230,-!p1@EN1!0.57!2.70!EN1;;chr2:45236648..45236659,-!p5@SIX2!0.57!2.70!SIX2;;chr11:46333934..46333963,+!p5@CREB3L1!0.57!2.70!CREB3L1;;chr10:3128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 +
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002556;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000075;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010323;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0011137
 +
|ffid_belonging_in_development=CL:0000134
 
|fonse_cell_line=
 
|fonse_cell_line=
 
|fonse_cell_line_closure=
 
|fonse_cell_line_closure=
Line 67: Line 41:
 
|fonse_treatment=
 
|fonse_treatment=
 
|fonse_treatment_closure=
 
|fonse_treatment_closure=
 +
|has_quality=
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|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor6%2520%2528PLH3%2529.CNhs11996.11380-118B3.hg19.nobarcode.bam
 +
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor6%2520%2528PLH3%2529.CNhs11996.11380-118B3.hg19.ctss.bed.gz
 +
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor6%2520%2528PLH3%2529.CNhs11996.11380-118B3.hg19.nobarcode.rdna.fa.gz
 +
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor6%2520%2528PLH3%2529.CNhs11996.11380-118B3.hg38.nobarcode.bam
 +
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor6%2520%2528PLH3%2529.CNhs11996.11380-118B3.hg38.nobarcode.ctss.bed.gz
 +
|id=FF:11380-118B3
 +
|is_a=EFO:0002091;;FF:0000067
 +
|is_obsolete=
 +
|library_id=CNhs11996
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|library_id_phase_based=2:CNhs11996
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|microRNAs=
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|microRNAs_nn=
 +
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11380
 +
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11380
 +
|name=Fibroblast - Periodontal Ligament, donor6 (PLH3)
 +
|namespace=FANTOM5
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|part_of=
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|profile_cagescan=,,,
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|profile_hcage=CNhs11996,LSID837,release011,COMPLETED
 +
|profile_rnaseq=
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|profile_srnaseq=,,,
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|refex=http://refex.dbcls.jp/genelist.php?lang
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 +
|rna_box=118
 +
|rna_catalog_number=N/A
 +
|rna_concentration=0.863
 +
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
 +
|rna_lot_number=
 +
|rna_od260/230=1.75
 +
|rna_od260/280=2.053333333
 +
|rna_position=B3
 +
|rna_rin=8.8
 +
|rna_sample_type=total RNA
 +
|rna_tube_id=118B3
 +
|rna_weight_ug=18.9838
 +
|sample_age=22
 +
|sample_category=primary cells
 +
|sample_cell_catalog=N/A
 +
|sample_cell_line=
 +
|sample_cell_lot=N/A
 +
|sample_cell_type=fibroblast
 +
|sample_collaboration=Mitsuhiro Ohshima (Nihon University School of Dentistry)
 +
|sample_company=N/A
 +
|sample_description=
 +
|sample_dev_stage=22 years old adult
 +
|sample_disease=
 +
|sample_donor(cell lot)=
 +
|sample_ethnicity=A
 +
|sample_experimental_condition=
 +
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.93457273633327e-214!GO:0005737;cytoplasm;5.4436177661655e-179!GO:0043226;organelle;7.91587905511382e-151!GO:0043229;intracellular organelle;2.30803361141321e-150!GO:0043231;intracellular membrane-bound organelle;5.99681661217249e-150!GO:0043227;membrane-bound organelle;6.74901990076507e-150!GO:0044444;cytoplasmic part;7.5136626676802e-126!GO:0044422;organelle part;1.12475278889561e-107!GO:0044446;intracellular organelle part;4.13413304241633e-106!GO:0005515;protein binding;4.50531599264967e-84!GO:0044238;primary metabolic process;1.78950430186752e-72!GO:0032991;macromolecular complex;3.57890188469101e-72!GO:0044237;cellular metabolic process;5.4089928886738e-71!GO:0043170;macromolecule metabolic process;1.76661164366202e-66!GO:0030529;ribonucleoprotein complex;1.7371003620832e-61!GO:0043233;organelle lumen;1.07520917547508e-52!GO:0031974;membrane-enclosed lumen;1.07520917547508e-52!GO:0005739;mitochondrion;1.40210430552346e-51!GO:0019538;protein metabolic process;5.21136214509209e-51!GO:0003723;RNA binding;2.25616938438863e-50!GO:0005634;nucleus;4.76141671401205e-50!GO:0044428;nuclear part;8.14714698761526e-49!GO:0031090;organelle membrane;2.54475781372922e-47!GO:0016043;cellular component organization and biogenesis;3.79599802096043e-47!GO:0044260;cellular macromolecule metabolic process;6.983010426189e-46!GO:0044267;cellular protein metabolic process;7.0091789458645e-45!GO:0015031;protein transport;6.72136092769975e-41!GO:0033036;macromolecule localization;1.27541219692347e-40!GO:0005840;ribosome;8.49423728707269e-40!GO:0008104;protein localization;2.50031850915583e-38!GO:0006412;translation;2.8706563742194e-38!GO:0045184;establishment of protein localization;3.12671759257678e-38!GO:0043234;protein complex;1.94564228012961e-37!GO:0005829;cytosol;1.53797731967999e-35!GO:0003735;structural constituent of ribosome;6.60976348159345e-35!GO:0009058;biosynthetic process;1.71323461489299e-34!GO:0044429;mitochondrial part;3.81396189261665e-34!GO:0009059;macromolecule biosynthetic process;4.32901741624839e-33!GO:0043283;biopolymer metabolic process;9.72870089405315e-33!GO:0033279;ribosomal subunit;2.6135883172605e-32!GO:0046907;intracellular transport;2.87959943693474e-32!GO:0031967;organelle envelope;1.15518212443456e-31!GO:0031975;envelope;1.8758815497094e-31!GO:0044249;cellular biosynthetic process;2.87661676809342e-31!GO:0031981;nuclear lumen;1.81550282838216e-29!GO:0006396;RNA processing;1.56493563325605e-28!GO:0006886;intracellular protein transport;3.3008209811796e-27!GO:0010467;gene expression;3.44290348632279e-27!GO:0065003;macromolecular complex assembly;3.38358711427634e-26!GO:0016071;mRNA metabolic process;2.88944987330411e-25!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.87047401793324e-25!GO:0022607;cellular component assembly;7.09523007119376e-24!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.76857003725788e-24!GO:0006996;organelle organization and biogenesis;1.10648216898029e-23!GO:0008380;RNA splicing;3.35074617624773e-23!GO:0005740;mitochondrial envelope;8.24502255889176e-23!GO:0005783;endoplasmic reticulum;3.01328389461009e-22!GO:0031966;mitochondrial membrane;1.15816793614262e-21!GO:0051649;establishment of cellular localization;4.2360511496041e-21!GO:0051641;cellular localization;4.64721493553647e-21!GO:0019866;organelle inner membrane;6.79885620402968e-21!GO:0012505;endomembrane system;1.05396035375031e-20!GO:0005794;Golgi apparatus;1.49790379934585e-20!GO:0006397;mRNA processing;1.7721939278979e-20!GO:0043228;non-membrane-bound organelle;2.3342407467203e-20!GO:0043232;intracellular non-membrane-bound organelle;2.3342407467203e-20!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.07308942280912e-20!GO:0005743;mitochondrial inner membrane;1.96175063953684e-19!GO:0048770;pigment granule;1.96175063953684e-19!GO:0042470;melanosome;1.96175063953684e-19!GO:0006119;oxidative phosphorylation;2.79512260359419e-19!GO:0044445;cytosolic part;5.69453866721441e-19!GO:0006457;protein folding;1.74782757316665e-18!GO:0005654;nucleoplasm;2.46366641410747e-18!GO:0016462;pyrophosphatase activity;9.32489833271232e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.10427511481626e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;1.75855511794718e-17!GO:0000166;nucleotide binding;3.03707764865721e-17!GO:0017111;nucleoside-triphosphatase activity;3.32900516624481e-17!GO:0008134;transcription factor binding;3.42838028456197e-17!GO:0015934;large ribosomal subunit;7.1525913943406e-17!GO:0044432;endoplasmic reticulum part;1.06173081732562e-16!GO:0044455;mitochondrial membrane part;1.59254892485139e-16!GO:0015935;small ribosomal subunit;1.95602754684436e-16!GO:0006512;ubiquitin cycle;2.57183669739931e-16!GO:0005681;spliceosome;2.5781052648729e-16!GO:0043285;biopolymer catabolic process;6.37992068970997e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;6.72907393940255e-16!GO:0019941;modification-dependent protein catabolic process;1.38791979587212e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.38791979587212e-15!GO:0030163;protein catabolic process;1.4160650558748e-15!GO:0044257;cellular protein catabolic process;2.1268201572419e-15!GO:0044451;nucleoplasm part;2.1268201572419e-15!GO:0016874;ligase activity;2.94532687543601e-15!GO:0006511;ubiquitin-dependent protein catabolic process;3.40249942567113e-15!GO:0044265;cellular macromolecule catabolic process;5.17423512608909e-15!GO:0022618;protein-RNA complex assembly;1.0748168365092e-14!GO:0007049;cell cycle;1.61865069375457e-14!GO:0012501;programmed cell death;1.84944111375485e-14!GO:0005746;mitochondrial respiratory chain;1.85504610236745e-14!GO:0006259;DNA metabolic process;2.47463318105082e-14!GO:0009057;macromolecule catabolic process;3.24859285594664e-14!GO:0006605;protein targeting;5.83052021069053e-14!GO:0043412;biopolymer modification;6.19408511889167e-14!GO:0006915;apoptosis;6.69967280476873e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.76983484529037e-14!GO:0031980;mitochondrial lumen;8.04167448964424e-14!GO:0005759;mitochondrial matrix;8.04167448964424e-14!GO:0016192;vesicle-mediated transport;8.55433183689189e-14!GO:0000502;proteasome complex (sensu Eukaryota);8.57349742777505e-14!GO:0048193;Golgi vesicle transport;1.4635746584072e-13!GO:0051082;unfolded protein binding;1.84917321083409e-13!GO:0008219;cell death;2.81385380789683e-13!GO:0016265;death;2.81385380789683e-13!GO:0032553;ribonucleotide binding;3.6967521152605e-13!GO:0032555;purine ribonucleotide binding;3.6967521152605e-13!GO:0048523;negative regulation of cellular process;3.84091944978906e-13!GO:0050136;NADH dehydrogenase (quinone) activity;4.02067642752909e-13!GO:0003954;NADH dehydrogenase activity;4.02067642752909e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.02067642752909e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.28672628826615e-13!GO:0006464;protein modification process;4.697044930713e-13!GO:0051186;cofactor metabolic process;8.89788319289922e-13!GO:0017076;purine nucleotide binding;8.91562391030043e-13!GO:0008135;translation factor activity, nucleic acid binding;9.22877233891292e-13!GO:0044248;cellular catabolic process;1.52825817579857e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.56102870279875e-12!GO:0003676;nucleic acid binding;4.21164870477555e-12!GO:0005730;nucleolus;5.70499510664351e-12!GO:0005793;ER-Golgi intermediate compartment;5.82855688584569e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.00341022337413e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.07627042813471e-11!GO:0048519;negative regulation of biological process;2.94486565525617e-11!GO:0003712;transcription cofactor activity;3.28842767771453e-11!GO:0030964;NADH dehydrogenase complex (quinone);3.40425318746826e-11!GO:0045271;respiratory chain complex I;3.40425318746826e-11!GO:0005747;mitochondrial respiratory chain complex I;3.40425318746826e-11!GO:0042775;organelle ATP synthesis coupled electron transport;4.14177949078043e-11!GO:0042773;ATP synthesis coupled electron transport;4.14177949078043e-11!GO:0005789;endoplasmic reticulum membrane;4.89086621654515e-11!GO:0043687;post-translational protein modification;5.8679554568748e-11!GO:0005761;mitochondrial ribosome;7.38571650421657e-11!GO:0000313;organellar ribosome;7.38571650421657e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.05221559440169e-10!GO:0008639;small protein conjugating enzyme activity;1.55791443101858e-10!GO:0022402;cell cycle process;1.77879065429704e-10!GO:0004842;ubiquitin-protein ligase activity;3.41690265530142e-10!GO:0016070;RNA metabolic process;3.68474624959111e-10!GO:0003924;GTPase activity;3.77606014104535e-10!GO:0003743;translation initiation factor activity;3.81260781591251e-10!GO:0006732;coenzyme metabolic process;4.28779162525416e-10!GO:0019787;small conjugating protein ligase activity;4.67040747204182e-10!GO:0006913;nucleocytoplasmic transport;5.23271612714607e-10!GO:0050794;regulation of cellular process;6.91444564305566e-10!GO:0051169;nuclear transport;9.64394654433598e-10!GO:0009055;electron carrier activity;9.83685512619166e-10!GO:0005635;nuclear envelope;1.00140995019408e-09!GO:0005524;ATP binding;1.13014710485722e-09!GO:0006413;translational initiation;1.53017543960844e-09!GO:0032559;adenyl ribonucleotide binding;1.74254170133935e-09!GO:0005768;endosome;2.14336699553529e-09!GO:0043067;regulation of programmed cell death;2.95686053030045e-09!GO:0042981;regulation of apoptosis;3.02414312836281e-09!GO:0006366;transcription from RNA polymerase II promoter;3.40069404103451e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.57137038025264e-09!GO:0006446;regulation of translational initiation;5.04784919702463e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.04807029957534e-09!GO:0030554;adenyl nucleotide binding;5.18168662415732e-09!GO:0044431;Golgi apparatus part;5.49223320674418e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;5.64116454966071e-09!GO:0000375;RNA splicing, via transesterification reactions;5.64116454966071e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.64116454966071e-09!GO:0031965;nuclear membrane;6.03130403264439e-09!GO:0016881;acid-amino acid ligase activity;9.32388153967835e-09!GO:0005788;endoplasmic reticulum lumen;1.0628647214582e-08!GO:0051726;regulation of cell cycle;1.2555828208034e-08!GO:0008565;protein transporter activity;1.3143333301594e-08!GO:0006461;protein complex assembly;1.74730019220273e-08!GO:0017038;protein import;1.8300895856672e-08!GO:0008361;regulation of cell size;1.9347620990492e-08!GO:0000074;regulation of progression through cell cycle;2.21747491263077e-08!GO:0016049;cell growth;2.46477710931551e-08!GO:0009259;ribonucleotide metabolic process;2.84965391156766e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.98529808891406e-08!GO:0009150;purine ribonucleotide metabolic process;3.52984227076117e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.86247416488755e-08!GO:0006163;purine nucleotide metabolic process;4.17219890150746e-08!GO:0009056;catabolic process;4.49671367251076e-08!GO:0000278;mitotic cell cycle;4.50325438657981e-08!GO:0051246;regulation of protein metabolic process;7.30949864967639e-08!GO:0030120;vesicle coat;8.4542569804576e-08!GO:0030662;coated vesicle membrane;8.4542569804576e-08!GO:0019829;cation-transporting ATPase activity;8.5518185656331e-08!GO:0043069;negative regulation of programmed cell death;1.00260937077894e-07!GO:0048522;positive regulation of cellular process;1.08601870764927e-07!GO:0009141;nucleoside triphosphate metabolic process;1.09354693705492e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.09926741167024e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.20139749355546e-07!GO:0005773;vacuole;1.21112764318496e-07!GO:0015986;ATP synthesis coupled proton transport;1.30108483702483e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.30108483702483e-07!GO:0001558;regulation of cell growth;1.30641985956194e-07!GO:0006974;response to DNA damage stimulus;1.38972731399423e-07!GO:0006164;purine nucleotide biosynthetic process;1.4623112423692e-07!GO:0016604;nuclear body;1.50008494889416e-07!GO:0050789;regulation of biological process;1.50552566180575e-07!GO:0006916;anti-apoptosis;1.51194303978293e-07!GO:0043066;negative regulation of apoptosis;1.5185606033426e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.63920359213412e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.94319574557117e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.94319574557117e-07!GO:0044453;nuclear membrane part;2.03936286322714e-07!GO:0042623;ATPase activity, coupled;2.05274370361205e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.07618547845343e-07!GO:0009260;ribonucleotide biosynthetic process;2.37516253186391e-07!GO:0016887;ATPase activity;2.74167126675155e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.92077379370592e-07!GO:0031324;negative regulation of cellular metabolic process;3.13658555441011e-07!GO:0048475;coated membrane;3.47065108881462e-07!GO:0030117;membrane coat;3.47065108881462e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;3.51040624465197e-07!GO:0016564;transcription repressor activity;3.72529133522637e-07!GO:0046034;ATP metabolic process;4.52405526059294e-07!GO:0031988;membrane-bound vesicle;4.53455916727003e-07!GO:0009117;nucleotide metabolic process;4.8859277320315e-07!GO:0003714;transcription corepressor activity;5.12577158722893e-07!GO:0051276;chromosome organization and biogenesis;5.13735148460943e-07!GO:0009142;nucleoside triphosphate biosynthetic process;5.17370064071281e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.17370064071281e-07!GO:0016023;cytoplasmic membrane-bound vesicle;5.74487276248939e-07!GO:0015078;hydrogen ion transmembrane transporter activity;6.51078417323758e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;6.77678423709194e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.59818300587572e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.59818300587572e-07!GO:0009060;aerobic respiration;1.02209811689667e-06!GO:0000323;lytic vacuole;1.04357639446488e-06!GO:0005764;lysosome;1.04357639446488e-06!GO:0042254;ribosome biogenesis and assembly;1.05200330817897e-06!GO:0045333;cellular respiration;1.09158921917234e-06!GO:0045786;negative regulation of progression through cell cycle;1.1320050844025e-06!GO:0051188;cofactor biosynthetic process;1.23679587961547e-06!GO:0031982;vesicle;1.25395568802691e-06!GO:0000139;Golgi membrane;1.28062221519317e-06!GO:0031252;leading edge;1.31509190228687e-06!GO:0006323;DNA packaging;1.31990091808716e-06!GO:0016491;oxidoreductase activity;1.77715556593277e-06!GO:0006754;ATP biosynthetic process;1.85813996086688e-06!GO:0006753;nucleoside phosphate metabolic process;1.85813996086688e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.88519484528298e-06!GO:0031410;cytoplasmic vesicle;2.08318242552333e-06!GO:0051789;response to protein stimulus;2.10513441293035e-06!GO:0006986;response to unfolded protein;2.10513441293035e-06!GO:0051170;nuclear import;2.16787478843941e-06!GO:0006793;phosphorus metabolic process;2.25699781208773e-06!GO:0006796;phosphate metabolic process;2.25699781208773e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.3926648296646e-06!GO:0005798;Golgi-associated vesicle;2.61304658402133e-06!GO:0016787;hydrolase activity;2.76463865790684e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.78245315074053e-06!GO:0004812;aminoacyl-tRNA ligase activity;2.78245315074053e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.78245315074053e-06!GO:0006606;protein import into nucleus;2.85025880714836e-06!GO:0005525;GTP binding;3.59368814832572e-06!GO:0000151;ubiquitin ligase complex;3.74073449679228e-06!GO:0009892;negative regulation of metabolic process;3.96007513917957e-06!GO:0044440;endosomal part;4.18840442565939e-06!GO:0010008;endosome membrane;4.18840442565939e-06!GO:0043038;amino acid activation;5.38782021539219e-06!GO:0006418;tRNA aminoacylation for protein translation;5.38782021539219e-06!GO:0043039;tRNA aminoacylation;5.38782021539219e-06!GO:0065004;protein-DNA complex assembly;5.47538710976068e-06!GO:0005770;late endosome;6.49391174802932e-06!GO:0005643;nuclear pore;6.87379891943456e-06!GO:0016607;nuclear speck;6.9975352954518e-06!GO:0048518;positive regulation of biological process;7.5337675991748e-06!GO:0006399;tRNA metabolic process;8.25616993211698e-06!GO:0009719;response to endogenous stimulus;8.74747531947644e-06!GO:0004386;helicase activity;8.9736530452616e-06!GO:0030036;actin cytoskeleton organization and biogenesis;9.03545658919812e-06!GO:0016567;protein ubiquitination;9.36743912860205e-06!GO:0032446;protein modification by small protein conjugation;9.57485683639035e-06!GO:0007005;mitochondrion organization and biogenesis;1.49409856850767e-05!GO:0045259;proton-transporting ATP synthase complex;1.53633813207784e-05!GO:0065002;intracellular protein transport across a membrane;1.57951004726354e-05!GO:0007243;protein kinase cascade;1.58790916609623e-05!GO:0030133;transport vesicle;1.63834024262293e-05!GO:0016310;phosphorylation;1.84266753376523e-05!GO:0005667;transcription factor complex;1.9354755849883e-05!GO:0004298;threonine endopeptidase activity;1.94871882756959e-05!GO:0006333;chromatin assembly or disassembly;2.08973378217159e-05!GO:0016481;negative regulation of transcription;2.11678548343114e-05!GO:0006281;DNA repair;2.12829131060658e-05!GO:0008026;ATP-dependent helicase activity;2.16480138579512e-05!GO:0006099;tricarboxylic acid cycle;2.29778011436395e-05!GO:0046356;acetyl-CoA catabolic process;2.29778011436395e-05!GO:0032561;guanyl ribonucleotide binding;2.30768913268754e-05!GO:0019001;guanyl nucleotide binding;2.30768913268754e-05!GO:0005694;chromosome;2.31030613516852e-05!GO:0005769;early endosome;2.31201413930015e-05!GO:0009108;coenzyme biosynthetic process;2.32557036264261e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.58652797489706e-05!GO:0051187;cofactor catabolic process;2.71977889876744e-05!GO:0030532;small nuclear ribonucleoprotein complex;2.73876406883891e-05!GO:0040008;regulation of growth;2.76182878706531e-05!GO:0008654;phospholipid biosynthetic process;3.2220850066028e-05!GO:0003697;single-stranded DNA binding;3.54983829488423e-05!GO:0043566;structure-specific DNA binding;3.89342444368736e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.9091266999056e-05!GO:0006084;acetyl-CoA metabolic process;4.13323121869192e-05!GO:0009109;coenzyme catabolic process;4.39188640751465e-05!GO:0006613;cotranslational protein targeting to membrane;4.86401192650835e-05!GO:0045454;cell redox homeostasis;5.01791734336118e-05!GO:0000245;spliceosome assembly;5.27374115559593e-05!GO:0022403;cell cycle phase;6.01365056852532e-05!GO:0006752;group transfer coenzyme metabolic process;6.1198509547995e-05!GO:0046930;pore complex;6.20095642304096e-05!GO:0044427;chromosomal part;7.52729662250241e-05!GO:0048468;cell development;8.15928040312803e-05!GO:0016740;transferase activity;8.50895021089496e-05!GO:0000785;chromatin;8.54440585795978e-05!GO:0006260;DNA replication;8.64636185777835e-05!GO:0015630;microtubule cytoskeleton;8.89209462390057e-05!GO:0030029;actin filament-based process;9.32658123938203e-05!GO:0005762;mitochondrial large ribosomal subunit;9.38529960035819e-05!GO:0000315;organellar large ribosomal subunit;9.38529960035819e-05!GO:0003713;transcription coactivator activity;9.80244776041637e-05!GO:0065007;biological regulation;9.93853967676231e-05!GO:0030867;rough endoplasmic reticulum membrane;0.000101064120179624!GO:0043623;cellular protein complex assembly;0.000107734248544829!GO:0015980;energy derivation by oxidation of organic compounds;0.000111729222204106!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000119469910751994!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000124338897850335!GO:0051301;cell division;0.000138361129568007!GO:0005905;coated pit;0.000149279188046812!GO:0016563;transcription activator activity;0.000167871833527759!GO:0016568;chromatin modification;0.000169360817889257!GO:0005048;signal sequence binding;0.000200003097538561!GO:0019899;enzyme binding;0.000203762659004842!GO:0006403;RNA localization;0.000205500745569209!GO:0005791;rough endoplasmic reticulum;0.000211442923429326!GO:0033116;ER-Golgi intermediate compartment membrane;0.000215860489068715!GO:0044262;cellular carbohydrate metabolic process;0.000218769701384952!GO:0007010;cytoskeleton organization and biogenesis;0.000219802125228669!GO:0006334;nucleosome assembly;0.000221477687441817!GO:0006091;generation of precursor metabolites and energy;0.000221803383985398!GO:0050657;nucleic acid transport;0.000229023772509851!GO:0051236;establishment of RNA localization;0.000229023772509851!GO:0050658;RNA transport;0.000229023772509851!GO:0006364;rRNA processing;0.000269028232267488!GO:0051427;hormone receptor binding;0.000302508240790504!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000322128240548684!GO:0016859;cis-trans isomerase activity;0.000338943730582055!GO:0000087;M phase of mitotic cell cycle;0.000344493343123799!GO:0019843;rRNA binding;0.000353776076167583!GO:0019867;outer membrane;0.000358545854796291!GO:0007067;mitosis;0.000372188701749135!GO:0008250;oligosaccharyl transferase complex;0.000374288031862878!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000380311137925369!GO:0051329;interphase of mitotic cell cycle;0.000390337518900487!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000400624502100125!GO:0008092;cytoskeletal protein binding;0.000410457062362199!GO:0007264;small GTPase mediated signal transduction;0.000415303865923378!GO:0031497;chromatin assembly;0.000420291737750133!GO:0004576;oligosaccharyl transferase activity;0.000422761072538969!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000434387726521281!GO:0031968;organelle outer membrane;0.000455453222373604!GO:0016044;membrane organization and biogenesis;0.000463227765655241!GO:0005885;Arp2/3 protein complex;0.000477759628936297!GO:0016072;rRNA metabolic process;0.000504726546578981!GO:0005813;centrosome;0.000509833526339345!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000545947071200823!GO:0035257;nuclear hormone receptor binding;0.000573268552936258!GO:0005741;mitochondrial outer membrane;0.000674243656062405!GO:0016197;endosome transport;0.000783304671160058!GO:0030663;COPI coated vesicle membrane;0.000801868522375938!GO:0030126;COPI vesicle coat;0.000801868522375938!GO:0051325;interphase;0.000838509379177573!GO:0006612;protein targeting to membrane;0.000920452056072864!GO:0016853;isomerase activity;0.000955605518899812!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00110351586326197!GO:0043021;ribonucleoprotein binding;0.00113350465827245!GO:0030132;clathrin coat of coated pit;0.00116365157918214!GO:0016779;nucleotidyltransferase activity;0.00116441935331412!GO:0009967;positive regulation of signal transduction;0.00116838283050024!GO:0018196;peptidyl-asparagine modification;0.0011779596916516!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0011779596916516!GO:0031072;heat shock protein binding;0.00119993634696508!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00121993076002935!GO:0003724;RNA helicase activity;0.00123752155434417!GO:0005815;microtubule organizing center;0.00126546139472004!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00127913899368211!GO:0048471;perinuclear region of cytoplasm;0.00134446786409533!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00139645707190078!GO:0015399;primary active transmembrane transporter activity;0.00139645707190078!GO:0009165;nucleotide biosynthetic process;0.00141611902202738!GO:0045892;negative regulation of transcription, DNA-dependent;0.00142294980013562!GO:0006891;intra-Golgi vesicle-mediated transport;0.00144552084918951!GO:0045941;positive regulation of transcription;0.00144552084918951!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00147254700901315!GO:0030137;COPI-coated vesicle;0.00148661014813651!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.001489933215528!GO:0051920;peroxiredoxin activity;0.00150894209392357!GO:0046474;glycerophospholipid biosynthetic process;0.00155824407544239!GO:0007050;cell cycle arrest;0.00156679509154928!GO:0030027;lamellipodium;0.00159041188071878!GO:0007040;lysosome organization and biogenesis;0.00175289047235815!GO:0005520;insulin-like growth factor binding;0.00190633762695873!GO:0045893;positive regulation of transcription, DNA-dependent;0.00191434263927689!GO:0019222;regulation of metabolic process;0.00196534238425627!GO:0006950;response to stress;0.00203778138641748!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00215799709530045!GO:0007033;vacuole organization and biogenesis;0.00219533329956208!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00236138126605897!GO:0043488;regulation of mRNA stability;0.00236255536914466!GO:0043487;regulation of RNA stability;0.00236255536914466!GO:0004177;aminopeptidase activity;0.00237222140735076!GO:0048487;beta-tubulin binding;0.00238175299017889!GO:0007160;cell-matrix adhesion;0.00239883490756514!GO:0043065;positive regulation of apoptosis;0.00239883490756514!GO:0051252;regulation of RNA metabolic process;0.00241607632370397!GO:0051028;mRNA transport;0.00250769979191156!GO:0000314;organellar small ribosomal subunit;0.00254674481141977!GO:0005763;mitochondrial small ribosomal subunit;0.00254674481141977!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00274604469335884!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00274604469335884!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00274604469335884!GO:0043068;positive regulation of programmed cell death;0.00276549863462144!GO:0044420;extracellular matrix part;0.00277247822931318!GO:0031589;cell-substrate adhesion;0.00287027640520086!GO:0001726;ruffle;0.00287027640520086!GO:0030176;integral to endoplasmic reticulum membrane;0.00303777482131802!GO:0006979;response to oxidative stress;0.00320522655583438!GO:0022890;inorganic cation transmembrane transporter activity;0.00324003777349149!GO:0030658;transport vesicle membrane;0.00325220026129406!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0033103584880405!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00333774016389914!GO:0046467;membrane lipid biosynthetic process;0.00371386872981678!GO:0043681;protein import into mitochondrion;0.00386402410516908!GO:0051128;regulation of cellular component organization and biogenesis;0.00398662658928738!GO:0003729;mRNA binding;0.0040737828845918!GO:0030041;actin filament polymerization;0.00410599244683854!GO:0045792;negative regulation of cell size;0.00414736851918298!GO:0000059;protein import into nucleus, docking;0.00418233166543199!GO:0051168;nuclear export;0.0043308887305036!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.00440396529299083!GO:0043284;biopolymer biosynthetic process;0.00456797385877213!GO:0008139;nuclear localization sequence binding;0.0047870334661139!GO:0030134;ER to Golgi transport vesicle;0.00480432497482469!GO:0030308;negative regulation of cell growth;0.0048098911312831!GO:0006509;membrane protein ectodomain proteolysis;0.0048098911312831!GO:0033619;membrane protein proteolysis;0.0048098911312831!GO:0030659;cytoplasmic vesicle membrane;0.00482834693163296!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00510542033046772!GO:0042802;identical protein binding;0.0052099511136918!GO:0008154;actin polymerization and/or depolymerization;0.00545720292822618!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00549033159183588!GO:0003690;double-stranded DNA binding;0.00581579068636583!GO:0008632;apoptotic program;0.00600549492296312!GO:0030127;COPII vesicle coat;0.00610512495492151!GO:0012507;ER to Golgi transport vesicle membrane;0.00610512495492151!GO:0004674;protein serine/threonine kinase activity;0.00613012460171267!GO:0006402;mRNA catabolic process;0.00640229328405344!GO:0030145;manganese ion binding;0.00657777620884919!GO:0043492;ATPase activity, coupled to movement of substances;0.00669633615608958!GO:0030118;clathrin coat;0.00670845336051761!GO:0048500;signal recognition particle;0.00686979390006299!GO:0000902;cell morphogenesis;0.00687487699805133!GO:0032989;cellular structure morphogenesis;0.00687487699805133!GO:0006818;hydrogen transport;0.00737694182047333!GO:0017166;vinculin binding;0.00755991089923744!GO:0015992;proton transport;0.00755991089923744!GO:0035258;steroid hormone receptor binding;0.00762108326193155!GO:0005581;collagen;0.00762108326193155!GO:0046489;phosphoinositide biosynthetic process;0.00787785892984171!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00789083314411962!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00796109061533183!GO:0005774;vacuolar membrane;0.00798175456717009!GO:0000082;G1/S transition of mitotic cell cycle;0.00846182507647958!GO:0065009;regulation of a molecular function;0.00889148834196357!GO:0006383;transcription from RNA polymerase III promoter;0.00902245942555112!GO:0000279;M phase;0.00914985952829635!GO:0006650;glycerophospholipid metabolic process;0.0093050378760696!GO:0008186;RNA-dependent ATPase activity;0.00935115221692979!GO:0030660;Golgi-associated vesicle membrane;0.00953191648370827!GO:0046519;sphingoid metabolic process;0.00987650861535767!GO:0003899;DNA-directed RNA polymerase activity;0.0100770431648246!GO:0007242;intracellular signaling cascade;0.0106480933891538!GO:0008047;enzyme activator activity;0.0107558336584957!GO:0008283;cell proliferation;0.0107847319605573!GO:0005583;fibrillar collagen;0.0108648916454955!GO:0051087;chaperone binding;0.0111067882460932!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0111443179079159!GO:0045045;secretory pathway;0.0111443179079159!GO:0007006;mitochondrial membrane organization and biogenesis;0.0111443179079159!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0113067942986087!GO:0006790;sulfur metabolic process;0.0117687500818904!GO:0031625;ubiquitin protein ligase binding;0.0118863970130649!GO:0031901;early endosome membrane;0.0119301095459829!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0121518585735693!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0121518585735693!GO:0006595;polyamine metabolic process;0.0121518585735693!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0121518585735693!GO:0015002;heme-copper terminal oxidase activity;0.0121518585735693!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0121518585735693!GO:0004129;cytochrome-c oxidase activity;0.0121518585735693!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0122178395681252!GO:0006414;translational elongation;0.0124202142795935!GO:0044433;cytoplasmic vesicle part;0.0124596428574378!GO:0031418;L-ascorbic acid binding;0.0124596428574378!GO:0012506;vesicle membrane;0.0126686154139895!GO:0008286;insulin receptor signaling pathway;0.0130681714644375!GO:0030833;regulation of actin filament polymerization;0.0131585530451081!GO:0006740;NADPH regeneration;0.0131585530451081!GO:0006098;pentose-phosphate shunt;0.0131585530451081!GO:0030521;androgen receptor signaling pathway;0.0132903031042408!GO:0005819;spindle;0.0132903031042408!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0134703989275942!GO:0019752;carboxylic acid metabolic process;0.0136674876448948!GO:0009966;regulation of signal transduction;0.0139769816332002!GO:0030880;RNA polymerase complex;0.0139769816332002!GO:0006082;organic acid metabolic process;0.0139966265377759!GO:0005869;dynactin complex;0.014211196696768!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0144212298935811!GO:0003746;translation elongation factor activity;0.0144212298935811!GO:0050811;GABA receptor binding;0.0145525089541562!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0146217491521022!GO:0045047;protein targeting to ER;0.0146217491521022!GO:0031543;peptidyl-proline dioxygenase activity;0.0147975781709183!GO:0008484;sulfuric ester hydrolase activity;0.0157883448074432!GO:0006626;protein targeting to mitochondrion;0.0157883448074432!GO:0051287;NAD binding;0.016018308396559!GO:0006917;induction of apoptosis;0.0161922784546884!GO:0005862;muscle thin filament tropomyosin;0.0163148881208214!GO:0030518;steroid hormone receptor signaling pathway;0.0163148881208214!GO:0003779;actin binding;0.0165372210129007!GO:0006984;ER-nuclear signaling pathway;0.0169275083867377!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.016973510641804!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.016973510641804!GO:0006607;NLS-bearing substrate import into nucleus;0.0170088267188018!GO:0008610;lipid biosynthetic process;0.0172127390557715!GO:0033673;negative regulation of kinase activity;0.0173050495080818!GO:0006469;negative regulation of protein kinase activity;0.0173050495080818!GO:0006672;ceramide metabolic process;0.0173050495080818!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0173050495080818!GO:0031529;ruffle organization and biogenesis;0.0175229980218624!GO:0051059;NF-kappaB binding;0.0183037359751973!GO:0006352;transcription initiation;0.0183647959237662!GO:0007034;vacuolar transport;0.0188539200270944!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0193638805222006!GO:0008629;induction of apoptosis by intracellular signals;0.0194998756243988!GO:0051101;regulation of DNA binding;0.0197742809186116!GO:0008637;apoptotic mitochondrial changes;0.0198735552406653!GO:0044437;vacuolar part;0.0199788689824519!GO:0031902;late endosome membrane;0.0203738162372696!GO:0051540;metal cluster binding;0.0203821136181217!GO:0051536;iron-sulfur cluster binding;0.0203821136181217!GO:0033559;unsaturated fatty acid metabolic process;0.0205190557577892!GO:0006636;unsaturated fatty acid biosynthetic process;0.0205190557577892!GO:0051270;regulation of cell motility;0.0205835776167535!GO:0019798;procollagen-proline dioxygenase activity;0.0207671506805041!GO:0015631;tubulin binding;0.0208450743319435!GO:0005765;lysosomal membrane;0.0208723691027292!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0208723691027292!GO:0030125;clathrin vesicle coat;0.0210829172407873!GO:0030665;clathrin coated vesicle membrane;0.0210829172407873!GO:0012502;induction of programmed cell death;0.0211009686946945!GO:0004004;ATP-dependent RNA helicase activity;0.0211051077423854!GO:0008234;cysteine-type peptidase activity;0.021280555071236!GO:0016126;sterol biosynthetic process;0.0214086990045521!GO:0016791;phosphoric monoester hydrolase activity;0.0214173781719196!GO:0045926;negative regulation of growth;0.0214470436600905!GO:0007041;lysosomal transport;0.0215489638972764!GO:0035035;histone acetyltransferase binding;0.021603616535503!GO:0006897;endocytosis;0.0219742555301714!GO:0010324;membrane invagination;0.0219742555301714!GO:0006401;RNA catabolic process;0.0222692623461039!GO:0006611;protein export from nucleus;0.0223046526369812!GO:0030032;lamellipodium biogenesis;0.0230327449116092!GO:0005637;nuclear inner membrane;0.0231808941830233!GO:0006497;protein amino acid lipidation;0.0232309363838215!GO:0006892;post-Golgi vesicle-mediated transport;0.0233102179269073!GO:0004722;protein serine/threonine phosphatase activity;0.0236334571591424!GO:0040029;regulation of gene expression, epigenetic;0.0242025215783707!GO:0006839;mitochondrial transport;0.0244115252173826!GO:0051348;negative regulation of transferase activity;0.0245297609894558!GO:0042158;lipoprotein biosynthetic process;0.0245333502326357!GO:0050681;androgen receptor binding;0.0246274409940887!GO:0016363;nuclear matrix;0.0252106414996774!GO:0006354;RNA elongation;0.025245074645773!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0254602449411534!GO:0000428;DNA-directed RNA polymerase complex;0.0254602449411534!GO:0048144;fibroblast proliferation;0.0255117648502875!GO:0048145;regulation of fibroblast proliferation;0.0255117648502875!GO:0045334;clathrin-coated endocytic vesicle;0.0256044647488981!GO:0004228;gelatinase A activity;0.0256044647488981!GO:0001955;blood vessel maturation;0.0256044647488981!GO:0000049;tRNA binding;0.0256044647488981!GO:0006643;membrane lipid metabolic process;0.0256044647488981!GO:0051235;maintenance of localization;0.0256051658118206!GO:0032906;transforming growth factor-beta2 production;0.0258623321121688!GO:0032909;regulation of transforming growth factor-beta2 production;0.0258623321121688!GO:0007030;Golgi organization and biogenesis;0.025914376985926!GO:0043022;ribosome binding;0.0265037131930714!GO:0005801;cis-Golgi network;0.0270145379198295!GO:0008312;7S RNA binding;0.0272284044908063!GO:0005096;GTPase activator activity;0.0275759262117364!GO:0008383;manganese superoxide dismutase activity;0.0288659823226992!GO:0001315;age-dependent response to reactive oxygen species;0.0288659823226992!GO:0000287;magnesium ion binding;0.0298537642795789!GO:0008180;signalosome;0.0304465204572343!GO:0016584;nucleosome positioning;0.0310441182901547!GO:0030119;AP-type membrane coat adaptor complex;0.0313968927770991!GO:0048146;positive regulation of fibroblast proliferation;0.0321506690418351!GO:0004721;phosphoprotein phosphatase activity;0.0323618686958895!GO:0005832;chaperonin-containing T-complex;0.0326451515449004!GO:0031301;integral to organelle membrane;0.0331771217807604!GO:0008022;protein C-terminus binding;0.0332706833770922!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0343958474318004!GO:0022415;viral reproductive process;0.0344456335795073!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0345016432491896!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0346066900951766!GO:0033043;regulation of organelle organization and biogenesis;0.0346066900951766!GO:0004860;protein kinase inhibitor activity;0.034733767112217!GO:0008287;protein serine/threonine phosphatase complex;0.0348444436779764!GO:0030503;regulation of cell redox homeostasis;0.0354757311176864!GO:0045936;negative regulation of phosphate metabolic process;0.0361900060732466!GO:0018193;peptidyl-amino acid modification;0.0368177934374335!GO:0030984;kininogen binding;0.036970202075834!GO:0004213;cathepsin B activity;0.036970202075834!GO:0030384;phosphoinositide metabolic process;0.036970202075834!GO:0003756;protein disulfide isomerase activity;0.0385053039596062!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0385053039596062!GO:0001516;prostaglandin biosynthetic process;0.0385053039596062!GO:0046457;prostanoid biosynthetic process;0.0385053039596062!GO:0005100;Rho GTPase activator activity;0.0390881396070196!GO:0043433;negative regulation of transcription factor activity;0.0406473543604054!GO:0006739;NADP metabolic process;0.040650824016704!GO:0006261;DNA-dependent DNA replication;0.0410662386055702!GO:0016272;prefoldin complex;0.0412014451261678!GO:0000339;RNA cap binding;0.0415639286024476!GO:0005684;U2-dependent spliceosome;0.041684745495404!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0435191420485947!GO:0000786;nucleosome;0.0435191420485947!GO:0051272;positive regulation of cell motility;0.0435992001423377!GO:0040017;positive regulation of locomotion;0.0435992001423377!GO:0030140;trans-Golgi network transport vesicle;0.0438917473417791!GO:0032940;secretion by cell;0.0446068575595522!GO:0051052;regulation of DNA metabolic process;0.0447267142781331!GO:0006518;peptide metabolic process;0.0450464388230058!GO:0007265;Ras protein signal transduction;0.0452742786468887!GO:0006376;mRNA splice site selection;0.0458138619518605!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0458138619518605!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0461776878023334!GO:0005159;insulin-like growth factor receptor binding;0.0462584728631672!GO:0009615;response to virus;0.0466183393722481!GO:0040011;locomotion;0.0479796182339252!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0481082949821831!GO:0005811;lipid particle;0.0481082949821831!GO:0030128;clathrin coat of endocytic vesicle;0.0481082949821831!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0481082949821831!GO:0030122;AP-2 adaptor complex;0.0481082949821831!GO:0046426;negative regulation of JAK-STAT cascade;0.0481082949821831!GO:0007021;tubulin folding;0.0482705330514767!GO:0006778;porphyrin metabolic process;0.0483078600086267!GO:0033013;tetrapyrrole metabolic process;0.0483078600086267!GO:0003684;damaged DNA binding;0.0490379898475837!GO:0030522;intracellular receptor-mediated signaling pathway;0.0494114539099655!GO:0030911;TPR domain binding;0.0494130434625957
 +
|sample_id=11380
 +
|sample_note=
 +
|sample_sex=male
 +
|sample_species=Human (Homo sapiens)
 +
|sample_strain=
 +
|sample_tissue=periodontal ligament
 +
|top_motifs=ESR1:1.81258908793;FOXL1:1.79411405024;TFAP4:1.57476926271;GLI1..3:1.53970865509;TFAP2{A,C}:1.53279415637;MAZ:1.42650682166;MYBL2:1.35556688214;ZNF238:1.35278429337;TFCP2:1.27797481;ALX4:1.26680508878;NFATC1..3:1.25498992692;MTE{core}:1.24761247046;TFAP2B:1.23513874702;HMGA1,2:1.23270763891;TFDP1:1.22821192782;RXR{A,B,G}:1.20839160757;UFEwm:1.10846098123;HES1:1.09809480263;XCPE1{core}:1.07745147115;HIC1:1.06747884559;EBF1:1.05401999343;EGR1..3:1.01687026789;PATZ1:1.00454294972;TAL1_TCF{3,4,12}:0.999234253826;TEAD1:0.99187157728;ATF6:0.950897824564;TLX1..3_NFIC{dimer}:0.943277437962;GTF2A1,2:0.94050321117;XBP1:0.928457419934;PPARG:0.890237796416;IRF1,2:0.868901288917;PAX1,9:0.864316897335;SPZ1:0.851571768692;MAFB:0.798765314225;NKX2-2,8:0.787123496694;GZF1:0.77660670058;MZF1:0.774794105647;TP53:0.769284734149;HAND1,2:0.748058419264;EVI1:0.740905215484;ZNF423:0.736502780328;SRF:0.73592943832;MTF1:0.722552709085;KLF4:0.669489033281;GTF2I:0.658203629233;IKZF1:0.644340293542;SP1:0.62971127852;HMX1:0.600538105336;PAX5:0.580030996595;LHX3,4:0.565406302979;SREBF1,2:0.531215357931;ZBTB6:0.525272642149;PAX3,7:0.480090564323;NKX3-1:0.476836169934;ZIC1..3:0.470798843906;NFIX:0.470309263624;ZFP161:0.460274275003;GFI1B:0.44930129825;GCM1,2:0.438194418459;bHLH_family:0.425065695691;MYFfamily:0.420530938758;STAT2,4,6:0.416580919789;NHLH1,2:0.399906121102;RREB1:0.395507597721;NANOG{mouse}:0.394356634091;NFE2L2:0.390703967264;TBP:0.383360504929;MED-1{core}:0.382569843187;PRDM1:0.367730672621;HBP1_HMGB_SSRP1_UBTF:0.360847466593;TBX4,5:0.359346304294;HIF1A:0.3111501651;FOXO1,3,4:0.282165199148;NR6A1:0.263065262451;IRF7:0.231629475723;SOX17:0.205355447499;NR3C1:0.204097962832;EN1,2:0.157997996173;NFE2L1:0.146385728854;JUN:0.128209051497;REST:0.0831292162226;GATA4:0.0541980484215;ZNF148:0.0525741470985;AHR_ARNT_ARNT2:0.0366825079797;CREB1:0.0306654199816;MEF2{A,B,C,D}:0.0292085862461;MYB:0.0273888451052;NKX2-3_NKX2-5:0.0198123884681;HOX{A4,D4}:0.00424051523889;HNF1A:-0.0140745713317;HLF:-0.0149004386423;POU6F1:-0.0338429511092;RXRA_VDR{dimer}:-0.0396326375347;GFI1:-0.0440898218485;POU3F1..4:-0.0489593704553;SOX5:-0.0540835245393;BACH2:-0.0551993079385;FOXD3:-0.0656050158249;CEBPA,B_DDIT3:-0.0663834438326;BREu{core}:-0.0757994914459;FOS_FOS{B,L1}_JUN{B,D}:-0.0820269898019;NFKB1_REL_RELA:-0.0849178018661;CDC5L:-0.0892740437725;ESRRA:-0.11046723953;HOX{A6,A7,B6,B7}:-0.112364589314;NKX2-1,4:-0.114222241147;ATF5_CREB3:-0.130378398082;NKX3-2:-0.130800672367;TOPORS:-0.154379994035;NFE2:-0.18371014283;SMAD1..7,9:-0.191608375695;STAT5{A,B}:-0.201649237327;RUNX1..3:-0.204110662648;HNF4A_NR2F1,2:-0.205029033526;ZNF143:-0.210369995529;FOX{D1,D2}:-0.213903981915;FOXA2:-0.216557034748;TEF:-0.232445157269;FOSL2:-0.232877083637;PAX8:-0.24683395856;NFIL3:-0.26325377271;CRX:-0.269641484399;ADNP_IRX_SIX_ZHX:-0.278699505711;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.290231127915;E2F1..5:-0.306168162299;FOX{F1,F2,J1}:-0.332114665274;AR:-0.348078679795;DBP:-0.360161695465;LEF1_TCF7_TCF7L1,2:-0.366198572152;RFX1:-0.368683432857;ATF4:-0.378662042937;AIRE:-0.389404399945;HOX{A5,B5}:-0.389546188469;DMAP1_NCOR{1,2}_SMARC:-0.39160591058;ZNF384:-0.403440740608;ELK1,4_GABP{A,B1}:-0.403595730973;NKX6-1,2:-0.418666226807;PITX1..3:-0.459871383472;ONECUT1,2:-0.464371364072;NR1H4:-0.475126418949;PBX1:-0.48057385735;POU5F1:-0.486812278521;ETS1,2:-0.494022104087;PAX4:-0.502646846316;YY1:-0.50452014951;POU1F1:-0.506477823109;PRRX1,2:-0.517963569256;NRF1:-0.519965789659;BPTF:-0.56246010747;SPIB:-0.566151744187;RBPJ:-0.578582106099;HSF1,2:-0.584249821819;SPI1:-0.603816198661;RORA:-0.627875202578;PAX2:-0.632007824049;NR5A1,2:-0.641854507221;T:-0.684891654757;CUX2:-0.699047306477;TGIF1:-0.708821820791;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.719748896265;LMO2:-0.722443724923;RFX2..5_RFXANK_RFXAP:-0.730209996754;ARID5B:-0.735326531844;ATF2:-0.736708867207;ELF1,2,4:-0.752781439842;FOXM1:-0.792518638614;FOX{I1,J2}:-0.79661720491;FOXN1:-0.810532497981;SOX2:-0.827125754047;NFY{A,B,C}:-0.827999490668;MYOD1:-0.830625394649;FOXP1:-0.836038407398;POU2F1..3:-0.899203163349;HOXA9_MEIS1:-0.906050614352;CDX1,2,4:-0.914439182387;GATA6:-0.990848894674;ZEB1:-0.991054636784;TLX2:-0.992086712426;PDX1:-1.00882178133;OCT4_SOX2{dimer}:-1.01364525624;EP300:-1.0310717271;ALX1:-1.03846492152;VSX1,2:-1.04679325986;FOXQ1:-1.05120583352;SOX{8,9,10}:-1.06264776699;FOXP3:-1.06529775922;SNAI1..3:-1.07701684401;STAT1,3:-1.11836011541;IKZF2:-1.17737876432;PAX6:-1.19885326721;ZBTB16:-1.23812233786;NANOG:-1.8010737083
 +
|xref=
 +
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11380-118B3;search_select_hide=table117:FF:11380-118B3
 
}}
 
}}

Latest revision as of 08:56, 4 June 2020

Name:Fibroblast - Periodontal Ligament, donor6 (PLH3)
Species:Human (Homo sapiens)
Library ID:CNhs11996
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueperiodontal ligament
dev stage22 years old adult
sexmale
age22
cell typefibroblast
cell lineNA
companyN/A
collaborationMitsuhiro Ohshima (Nihon University School of Dentistry)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005628
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11996 CAGE DRX008279 DRR009151
Accession ID Hg19

Library idBAMCTSS
CNhs11996 DRZ000576 DRZ001961
Accession ID Hg38

Library idBAMCTSS
CNhs11996 DRZ011926 DRZ013311
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis--0.0712
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma--0.0667
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.753
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.162
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19--0.0612
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle--0.257
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0608
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.551
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.235
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.371
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus--0.128
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.243
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.114
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth--0.022
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small--0.0559
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.128
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.114
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.279
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.343
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.539
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.162
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.846
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0608
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.492
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11996

Jaspar motif P-value
MA0002.2 0.0357
MA0003.1 0.555
MA0004.1 0.664
MA0006.1 0.23
MA0007.1 0.82
MA0009.1 0.613
MA0014.1 0.38
MA0017.1 0.122
MA0018.2 0.351
MA0019.1 0.714
MA0024.1 0.242
MA0025.1 0.0825
MA0027.1 0.613
MA0028.1 0.0265
MA0029.1 0.074
MA0030.1 0.96
MA0031.1 0.465
MA0035.2 0.00665
MA0038.1 0.282
MA0039.2 0.0575
MA0040.1 0.191
MA0041.1 0.201
MA0042.1 0.26
MA0043.1 0.0899
MA0046.1 0.882
MA0047.2 0.767
MA0048.1 0.601
MA0050.1 1.21002e-5
MA0051.1 1.77427e-5
MA0052.1 0.704
MA0055.1 0.188
MA0057.1 0.64
MA0058.1 0.569
MA0059.1 0.0837
MA0060.1 9.27316e-4
MA0061.1 0.106
MA0062.2 2.89467e-5
MA0065.2 0.0184
MA0066.1 0.503
MA0067.1 0.177
MA0068.1 0.023
MA0069.1 0.504
MA0070.1 0.656
MA0071.1 0.596
MA0072.1 0.391
MA0073.1 0.881
MA0074.1 0.466
MA0076.1 0.0204
MA0077.1 0.677
MA0078.1 0.614
MA0079.2 0.296
MA0080.2 1.64927e-8
MA0081.1 0.0273
MA0083.1 0.00814
MA0084.1 0.269
MA0087.1 0.505
MA0088.1 0.0771
MA0090.1 0.00169
MA0091.1 0.524
MA0092.1 0.821
MA0093.1 0.67
MA0099.2 0.0394
MA0100.1 0.561
MA0101.1 0.387
MA0102.2 0.52
MA0103.1 0.00221
MA0104.2 0.00553
MA0105.1 1.49553e-4
MA0106.1 0.607
MA0107.1 0.391
MA0108.2 8.47123e-6
MA0111.1 0.246
MA0112.2 0.231
MA0113.1 0.804
MA0114.1 0.0784
MA0115.1 0.167
MA0116.1 4.07547e-4
MA0117.1 0.312
MA0119.1 0.367
MA0122.1 0.466
MA0124.1 0.701
MA0125.1 0.204
MA0131.1 0.564
MA0135.1 0.359
MA0136.1 1.6243e-10
MA0137.2 0.884
MA0138.2 0.584
MA0139.1 0.0714
MA0140.1 0.0184
MA0141.1 0.412
MA0142.1 0.138
MA0143.1 0.654
MA0144.1 0.967
MA0145.1 0.649
MA0146.1 0.715
MA0147.1 0.00142
MA0148.1 0.963
MA0149.1 0.336
MA0150.1 0.0312
MA0152.1 0.0641
MA0153.1 0.826
MA0154.1 0.0183
MA0155.1 0.575
MA0156.1 1.0664e-5
MA0157.1 0.442
MA0159.1 0.0537
MA0160.1 0.435
MA0162.1 0.583
MA0163.1 4.6956e-4
MA0164.1 0.673
MA0258.1 0.443
MA0259.1 0.0492



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11996

Novel motif P-value
1 0.0215
10 0.169
100 0.436
101 0.168
102 0.132
103 0.382
104 0.48
105 0.153
106 0.988
107 0.528
108 0.721
109 0.348
11 0.147
110 0.0619
111 0.14
112 0.656
113 0.183
114 0.0621
115 0.0249
116 0.597
117 0.0784
118 0.0575
119 0.0715
12 0.26
120 0.805
121 0.327
122 0.237
123 0.00189
124 0.209
125 0.859
126 0.465
127 0.732
128 0.483
129 0.161
13 0.0431
130 0.22
131 0.751
132 0.398
133 0.259
134 0.0514
135 0.975
136 0.17
137 0.993
138 0.487
139 0.011
14 0.361
140 0.196
141 0.00279
142 0.997
143 0.734
144 0.487
145 0.431
146 0.657
147 0.287
148 0.306
149 0.806
15 0.134
150 0.527
151 0.635
152 0.0176
153 0.352
154 0.94
155 0.0272
156 0.641
157 0.0919
158 0.0135
159 0.434
16 0.684
160 0.211
161 0.419
162 0.792
163 0.76
164 0.708
165 0.643
166 0.0228
167 0.206
168 0.375
169 0.531
17 0.662
18 0.952
19 0.53
2 0.563
20 0.505
21 0.98
22 0.864
23 0.856
24 0.197
25 0.139
26 0.755
27 0.719
28 0.297
29 0.163
3 0.177
30 0.302
31 0.93
32 1.20706e-8
33 0.637
34 0.889
35 0.121
36 0.00886
37 0.468
38 0.232
39 0.805
4 0.288
40 0.0477
41 0.335
42 0.0967
43 0.37
44 0.666
45 0.875
46 0.267
47 0.032
48 0.0834
49 0.0965
5 0.421
50 0.62
51 0.655
52 0.639
53 0.15
54 0.867
55 0.878
56 0.428
57 0.185
58 0.199
59 0.518
6 0.948
60 0.643
61 0.399
62 0.233
63 0.865
64 0.177
65 0.894
66 0.365
67 0.987
68 0.22
69 0.933
7 0.0582
70 0.301
71 0.052
72 0.339
73 0.33
74 0.814
75 0.0711
76 0.911
77 0.993
78 0.0365
79 0.00651
8 0.456
80 0.292
81 0.312
82 0.0801
83 0.372
84 0.907
85 0.366
86 0.742
87 0.184
88 0.578
89 0.654
9 0.732
90 0.0663
91 0.218
92 0.505
93 0.394
94 0.223
95 0.531
96 0.214
97 0.468
98 0.145
99 0.06



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs11996


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002556 (fibroblast of periodontium)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000075 (subdivision of skeletal system)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001758 (periodontium)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0000165 (mouth)
0003672 (dentition)
0011137 (axial skeletal system)
0010323 (cranial skeletal system)
0003129 (skull)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000067 (human fibroblast of periodontium sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

CL:0000134 (mesenchymal cell)