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{{f5samples
 
{{f5samples
 
|DRA_sample_Accession=CAGE@SAMD00005448
 
|DRA_sample_Accession=CAGE@SAMD00005448
|accession_numbers=CAGE;DRX008208;DRR009080;DRZ000505;DRZ001890
+
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005448
 +
|accession_numbers=CAGE;DRX008208;DRR009080;DRZ000505;DRZ001890;DRZ011855;DRZ013240
 +
|accession_numbers_RNASeq=sRNA-Seq;DRX037241;DRR041607;DRZ007249
 
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000970,UBERON:0000019,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000020,UBERON:0010371,UBERON:0002203,UBERON:0001768,UBERON:0000488,UBERON:0007625,UBERON:0001032,UBERON:0002049,UBERON:0002200,UBERON:0006876,UBERON:0010317,UBERON:0007798,UBERON:0001778,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0004535,UBERON:0002104,UBERON:0001801,UBERON:0004456,UBERON:0001456,UBERON:0001775,UBERON:0010230,UBERON:0001009
 
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000970,UBERON:0000019,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000020,UBERON:0010371,UBERON:0002203,UBERON:0001768,UBERON:0000488,UBERON:0007625,UBERON:0001032,UBERON:0002049,UBERON:0002200,UBERON:0006876,UBERON:0010317,UBERON:0007798,UBERON:0001778,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0004535,UBERON:0002104,UBERON:0001801,UBERON:0004456,UBERON:0001456,UBERON:0001775,UBERON:0010230,UBERON:0001009
 
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000064,CL:0000075,CL:0000066,CL:0002371,CL:0000710,CL:0000255,CL:0002077,CL:0000067,CL:0005012,CL:0002304
 
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000064,CL:0000075,CL:0000066,CL:0002371,CL:0000710,CL:0000255,CL:0002077,CL:0000067,CL:0005012,CL:0002304
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|def=
 
|def=
 
|expression_enrichment_score=chr11:31839488..31839515,-!p3@PAX6!1.71!50.24!PAX6;;chr13:72441315..72441454,-!p1@DACH1!1.53!64.12!DACH1;;chr10:48355030..48355090,+!p1@ZNF488!1.51!39.88!ZNF488;;chr11:31832658..31832681,-!p1@PAX6!1.50!30.30!PAX6;;chr3:147127142..147127168,+!p1@ZIC1!1.47!28.63!ZIC1;;chr14:60975883..60975911,+!p1@SIX6!1.45!27.23!SIX6;;chr6:45296048..45296082,+!p1@RUNX2!1.44!30.13!RUNX2;;chr14:29235961..29236008,+!p1@FOXG1!1.43!26.17!FOXG1;;chr3:147127177..147127194,+!p2@ZIC1!1.43!25.91!ZIC1;;chr5:92918919..92918942,+!p1@NR2F1!1.42!108.83!NR2F1;;chr16:86600426..86600441,+!p1@FOXC2!1.39!57.36!FOXC2;;chr7:35293685..35293718,-!p1@TBX20!1.36!21.96!TBX20;;chr20:30433396..30433414,-!p1@FOXS1!1.36!21.70!FOXS1;;chr12:66218255..66218304,+!p3@HMGA2!1.34!55.16!HMGA2;;chr2:45168834..45168847,+!p2@SIX3!1.34!20.73!SIX3;;chr3:71630980..71631110,-!p3@FOXP1!1.32!68.34!FOXP1;;chr2:63277948..63277974,+!p1@OTX1!1.30!19.06!OTX1;;chr3:25470156..25470227,+!p2@RARB!1.29!18.53!RARB;;chr3:170076314..170076334,+!p2@SKIL!1.28!23.63!SKIL;;chr2:5832508..5832524,+!p1@SOX11!1.28!18.09!SOX11;;chr2:45168875..45168916,+!p1@SIX3!1.27!17.83!SIX3;;chr14:60975858..60975869,+!p2@SIX6!1.27!17.65!SIX6;;chr12:66218598..66218645,+!p2@HMGA2!1.26!78.09!HMGA2;;chr3:21792682..21792720,-!p1@ZNF385D!1.22!15.63!ZNF385D;;chr2:45169193..45169219,+!p3@SIX3!1.22!15.46!SIX3;;chr9:126774018..126774055,+!p1@LHX2!1.20!14.93!LHX2;;chr12:66218212..66218244,+!p5@HMGA2!1.13!18.09!HMGA2;;chr3:21792585..21792625,-!p2@ZNF385D!1.13!13.88!ZNF385D;;chr13:72441074..72441172,-!p2@DACH1!1.13!12.38!DACH1;;chr12:66218183..66218209,+!p4@HMGA2!1.11!22.75!HMGA2;;chr2:63277978..63277995,+!p2@OTX1!1.09!11.33!OTX1;;chr5:92919100..92919135,+!p3@NR2F1!1.08!13.35!NR2F1;;chr5:92918956..92918969,+!p4@NR2F1!1.06!11.59!NR2F1;;chr11:31832862..31832884,-!p2@PAX6!1.06!10.45!PAX6;;chr3:25469724..25469773,+!p1@RARB!1.05!14.76!RARB;;chr3:147139053..147139112,+!p5@ZIC1!1.05!10.19!ZIC1;;chrX:136648279..136648295,+!p1@ZIC3!1.05!10.10!ZIC3;;chr13:45010939..45011033,-!p1@TSC22D1!1.04!663.24!TSC22D1;;chr3:147111231..147111281,+!p3@ZIC1!1.04!10.01!ZIC1;;chr19:46800289..46800327,+!p2@HIF3A!1.03!9.84!HIF3A;;chr3:71631151..71631194,-!p15@FOXP1!1.02!10.80!FOXP1;;chr9:77112244..77112262,+!p1@RORB!1.02!10.72!RORB;;chrX:139587228..139587234,-!p1@SOX3!1.02!9.57!SOX3;;chr11:61520075..61520136,+!p1@C11orf9!1.00!19.50!C11orf9;;chr11:31832610..31832639,-!p5@PAX6!0.99!8.70!PAX6;;chr8:60031619..60031676,-!p1@TOX!0.98!18.80!TOX;;chr5:92918768..92918783,+!p8@NR2F1!0.98!8.52!NR2F1;;chr18:56940611..56940660,-!p1@RAX!0.98!8.52!RAX;;chr11:31832581..31832601,-!p7@PAX6!0.98!8.52!PAX6;;chr10:64576105..64576133,-!p1@EGR2!0.97!17.48!EGR2;;chr13:100634031..100634045,+!p1@ZIC2!0.97!8.26!ZIC2;;chr14:60975644..60975673,+!p3@SIX6!0.97!8.26!SIX6;;chr5:72744594..72744609,-!p1@FOXD1!0.96!38.21!FOXD1;;chr3:147124307..147124336,-!p2@ZIC4!0.96!8.17!ZIC4;;chr14:29236269..29236285,+!p3@FOXG1!0.95!7.82!FOXG1;;chr1:151032922..151032951,+!p2@MLLT11!0.94!13.18!MLLT11;;chr1:151032860..151032918,+!p1@MLLT11!0.93!91.88!MLLT11;;chr14:61116183..61116208,-!p1@SIX1!0.93!29.60!SIX1;;chr12:66218836..66218888,+!p1@HMGA2!0.92!71.94!HMGA2;;chr11:31832807..31832823,-!p4@PAX6!0.92!7.38!PAX6;;chr4:8873545..8873583,-!p1@HMX1!0.92!7.38!HMX1;;chr2:45169143..45169167,+!p5@SIX3!0.92!7.29!SIX3;;chr2:25475120..25475176,-!p2@DNMT3A!0.91!9.75!DNMT3A;;chr14:29234581..29234601,+!p2@FOXG1!0.91!7.20!FOXG1;;chr6:45390077..45390105,+!p9@RUNX2!0.89!8.78!RUNX2;;chr19:49864746..49864780,-!p2@TEAD2!0.88!9.22!TEAD2;;chr5:92918894..92918912,+!p2@NR2F1!0.87!22.05!NR2F1;;chr3:169381420..169381535,-!p1@MECOM!0.87!7.64!MECOM;;chr12:125002827..125002855,-!p5@NCOR2!0.86!9.13!NCOR2;;chr5:92919068..92919082,+!p5@NR2F1!0.86!7.55!NR2F1;;chrX:136648643..136648711,+!p2@ZIC3!0.86!6.32!ZIC3;;chr12:26277817..26277863,-!p2@BHLHE41!0.85!8.52!BHLHE41;;chr5:92918860..92918871,+!p10@NR2F1!0.85!6.85!NR2F1;;chr5:92919375..92919438,+!p6@NR2F1!0.85!6.59!NR2F1;;chr11:31827535..31827565,-!p11@PAX6!0.85!6.06!PAX6;;chr18:19749541..19749557,+!p1@GATA6!0.84!19.59!GATA6;;chr2:71127699..71127744,+!p1@VAX2!0.84!12.74!VAX2;;chr12:80084279..80084293,-!p8@PAWR!0.84!10.28!PAWR;;chr12:66218573..66218596,+!p7@HMGA2!0.84!9.05!HMGA2;;chr5:92920456..92920488,+!p9@NR2F1!0.84!6.94!NR2F1;;chr3:21792631..21792665,-!p3@ZNF385D!0.84!5.88!ZNF385D;;chr8:60031682..60031710,-!p2@TOX!0.82!9.49!TOX;;chr2:45169179..45169190,+!p8@SIX3!0.82!5.53!SIX3;;chr12:26277956..26277980,-!p1@BHLHE41!0.81!21.17!BHLHE41;;chr3:181429704..181429722,+!p1@SOX2!0.81!5.45!SOX2;;chr8:60031809..60031835,-!p4@TOX!0.80!6.85!TOX;;chr3:71631382..71631413,-!p20@FOXP1!0.80!6.15!FOXP1;;chr2:5832493..5832507,+!p2@SOX11!0.80!5.36!SOX11;;chr13:45009301..45009320,-!p7@TSC22D1!0.80!5.36!TSC22D1;;chr1:197886461..197886558,+!p1@LHX9!0.80!5.36!LHX9;;chr9:16705069..16705086,-!p3@BNC2!0.80!5.36!BNC2;;chr13:100623375..100623425,-!p1@ZIC5!0.80!5.27!ZIC5;;chr2:45168997..45169020,+!p4@SIX3!0.80!5.27!SIX3;;chr15:80696703..80696754,+!p1@ARNT2!0.79!7.11!ARNT2;;chr9:168706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 +
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000067;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000710;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002077;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000970;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001768;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001801;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007625
 
|ffid_belonging_in_development=CL:0000133,CL:0000221
 
|ffid_belonging_in_development=CL:0000133,CL:0000221
 
|fonse_cell_line=
 
|fonse_cell_line=
Line 41: Line 44:
 
|fonse_treatment_closure=
 
|fonse_treatment_closure=
 
|has_quality=
 
|has_quality=
 +
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Ciliary%2520Epithelial%2520Cells%252c%2520donor3.CNhs12009.11399-118D4.hg19.nobarcode.bam
 +
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Ciliary%2520Epithelial%2520Cells%252c%2520donor3.CNhs12009.11399-118D4.hg19.ctss.bed.gz
 +
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Ciliary%2520Epithelial%2520Cells%252c%2520donor3.CNhs12009.11399-118D4.hg19.nobarcode.rdna.fa.gz
 +
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Ciliary%2520Epithelial%2520Cells%252c%2520donor3.CNhs12009.11399-118D4.hg38.nobarcode.bam
 +
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Ciliary%2520Epithelial%2520Cells%252c%2520donor3.CNhs12009.11399-118D4.hg38.nobarcode.ctss.bed.gz
 
|id=FF:11399-118D4
 
|id=FF:11399-118D4
 
|is_a=EFO:0002091;;FF:0000040
 
|is_a=EFO:0002091;;FF:0000040
Line 46: Line 54:
 
|library_id=CNhs12009
 
|library_id=CNhs12009
 
|library_id_phase_based=2:CNhs12009
 
|library_id_phase_based=2:CNhs12009
 +
|microRNAs=
 +
|microRNAs_nn=
 +
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11399
 +
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.GTGAAA.11399
 +
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11399
 +
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.GTGAAA.11399
 
|name=Ciliary Epithelial Cells, donor3
 
|name=Ciliary Epithelial Cells, donor3
 
|namespace=FANTOM5
 
|namespace=FANTOM5
Line 53: Line 67:
 
|profile_rnaseq=
 
|profile_rnaseq=
 
|profile_srnaseq=SRhi10014,,,
 
|profile_srnaseq=SRhi10014,,,
 +
|refex=http://refex.dbcls.jp/genelist.php?lang
 
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Line 67: Line 82:
 
|rna_tube_id=118D4
 
|rna_tube_id=118D4
 
|rna_weight_ug=10
 
|rna_weight_ug=10
 +
|rnaseq_library_id=SRhi10014.GTGAAA
 
|sample_age=fetal
 
|sample_age=fetal
 
|sample_category=primary cells
 
|sample_category=primary cells
Line 90: Line 106:
 
|top_motifs=PAX1,9:2.39854036695;NKX2-1,4:1.81247492911;ZIC1..3:1.69868676191;T:1.69628347995;ZNF384:1.68120944324;SOX17:1.41142398653;SOX2:1.2274253071;CDC5L:1.19820166598;MZF1:1.16063511151;GFI1:1.12890050348;EGR1..3:1.12747053299;NR3C1:1.11823815274;EVI1:1.04171756918;NKX2-3_NKX2-5:0.987449065117;TEAD1:0.986567359373;MAZ:0.971958690558;NKX3-1:0.970542629431;EBF1:0.877850125978;TOPORS:0.873139074789;NANOG:0.863790156588;NR6A1:0.854951522027;TFAP2{A,C}:0.851061723189;FOXP1:0.807150794923;HSF1,2:0.80675870692;GTF2A1,2:0.793143513239;SRF:0.791096311782;ZFP161:0.791074773264;PAX4:0.789583834166;TFDP1:0.78937646214;SP1:0.770985749395;ALX1:0.767263337494;NFY{A,B,C}:0.766121495646;PATZ1:0.755035626736;NKX6-1,2:0.730526080747;UFEwm:0.706142050339;HOX{A4,D4}:0.705239833509;HMGA1,2:0.691477328137;KLF4:0.690149034099;CDX1,2,4:0.661003185092;MTE{core}:0.618944716642;TFAP4:0.611323107868;XCPE1{core}:0.598772957638;LHX3,4:0.577229012319;TLX1..3_NFIC{dimer}:0.572232383653;TBX4,5:0.563083975299;POU1F1:0.562024877607;PAX5:0.548086519097;RXR{A,B,G}:0.542959147035;GATA4:0.525929603469;HIC1:0.505702212467;AIRE:0.496979996418;GFI1B:0.474757190642;GZF1:0.472325984183;SOX{8,9,10}:0.470693927015;TFCP2:0.468807861925;ALX4:0.466284813849;TFAP2B:0.45834922278;ONECUT1,2:0.443670566793;HOXA9_MEIS1:0.435776342358;E2F1..5:0.434129269946;PRDM1:0.41562226889;ZBTB16:0.412511698817;NRF1:0.38578630303;OCT4_SOX2{dimer}:0.385014133554;POU5F1:0.378392148674;GTF2I:0.360334479595;VSX1,2:0.357302165802;EN1,2:0.346137223137;HOX{A5,B5}:0.328150817953;ELK1,4_GABP{A,B1}:0.311709549872;IKZF2:0.310945372805;ZNF143:0.297286345368;NHLH1,2:0.28414863142;STAT1,3:0.283985855545;TAL1_TCF{3,4,12}:0.279469497968;NFATC1..3:0.276019552821;LEF1_TCF7_TCF7L1,2:0.273928567999;PAX8:0.27047127162;GLI1..3:0.257165729603;FOXM1:0.254237943516;RBPJ:0.22119963359;HNF4A_NR2F1,2:0.214571811239;MYFfamily:0.185035885053;FOXD3:0.184259951513;BREu{core}:0.18413682219;CRX:0.183277944162;MTF1:0.178185301217;POU3F1..4:0.177157664163;DBP:0.173202714299;MYOD1:0.172032714547;TBP:0.166736484599;PITX1..3:0.164346108041;RFX1:0.161351455279;IKZF1:0.153669147929;ZBTB6:0.141031536984;MED-1{core}:0.121366007283;PBX1:0.096855162258;RREB1:0.087525490962;FOSL2:0.0868794406613;ADNP_IRX_SIX_ZHX:0.0856253862067;POU6F1:0.070349046621;NKX3-2:0.0598187571774;ZNF148:0.0588796975541;NANOG{mouse}:0.0434698128788;RUNX1..3:0.0177787025732;MYBL2:0.00122360595904;HOX{A6,A7,B6,B7}:-0.0275244931744;MYB:-0.0547049556886;FOX{I1,J2}:-0.0634775215464;AHR_ARNT_ARNT2:-0.0643899789147;REST:-0.0659670284567;BACH2:-0.0694535419039;YY1:-0.0727179010475;ESR1:-0.0742291382562;PRRX1,2:-0.0847094947097;JUN:-0.110306274824;RFX2..5_RFXANK_RFXAP:-0.112545128491;POU2F1..3:-0.1271524939;XBP1:-0.149104969145;SMAD1..7,9:-0.154809802652;FOXP3:-0.162297763388;ZNF423:-0.167798009915;FOS_FOS{B,L1}_JUN{B,D}:-0.175661112429;FOXA2:-0.180166704282;GCM1,2:-0.183509597698;LMO2:-0.187572253614;HNF1A:-0.197146492209;ARID5B:-0.206074838022;TP53:-0.214884565297;ATF6:-0.222369642614;SPZ1:-0.223817319933;SNAI1..3:-0.230344626026;TGIF1:-0.237273334648;RXRA_VDR{dimer}:-0.243192811716;HMX1:-0.243622171925;NFE2L1:-0.256787334805;NFE2L2:-0.278724407289;ELF1,2,4:-0.279671858607;CUX2:-0.286807630185;NFE2:-0.315935636503;ESRRA:-0.31593796056;SOX5:-0.324431815899;ATF4:-0.330090204061;STAT2,4,6:-0.339479638602;ZEB1:-0.347801077874;MEF2{A,B,C,D}:-0.355167372975;EP300:-0.372101923577;AR:-0.385884403033;NFKB1_REL_RELA:-0.39314088177;PAX6:-0.402984826373;PAX3,7:-0.405380168776;SPI1:-0.407638234453;ATF2:-0.410856802225;IRF1,2:-0.417447948187;TLX2:-0.421169388855;HIF1A:-0.42840375229;RORA:-0.430810000495;STAT5{A,B}:-0.442131429368;CREB1:-0.449430463038;SPIB:-0.46304636847;FOX{D1,D2}:-0.478990987807;DMAP1_NCOR{1,2}_SMARC:-0.482734769574;FOXN1:-0.496122795015;FOXL1:-0.500430701069;BPTF:-0.500914339496;HLF:-0.501018730799;GATA6:-0.524679709476;FOXO1,3,4:-0.527560329068;TEF:-0.538372543259;ETS1,2:-0.543512389076;NR1H4:-0.544551803586;NFIX:-0.566792185741;IRF7:-0.583642455043;SREBF1,2:-0.634725772324;ATF5_CREB3:-0.644407416571;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.6559467869;PAX2:-0.656398348561;FOXQ1:-0.666050090356;bHLH_family:-0.693794695;NR5A1,2:-0.711825222893;CEBPA,B_DDIT3:-0.716925772625;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.761869734056;MAFB:-0.799956520454;NFIL3:-0.807287920663;NKX2-2,8:-0.840580501984;FOX{F1,F2,J1}:-0.92779777671;ZNF238:-0.98053778508;PDX1:-1.0097874921;PPARG:-1.12657831039;HAND1,2:-1.39108199833;HBP1_HMGB_SSRP1_UBTF:-1.40457682808;HES1:-1.6621366909
 
|top_motifs=PAX1,9:2.39854036695;NKX2-1,4:1.81247492911;ZIC1..3:1.69868676191;T:1.69628347995;ZNF384:1.68120944324;SOX17:1.41142398653;SOX2:1.2274253071;CDC5L:1.19820166598;MZF1:1.16063511151;GFI1:1.12890050348;EGR1..3:1.12747053299;NR3C1:1.11823815274;EVI1:1.04171756918;NKX2-3_NKX2-5:0.987449065117;TEAD1:0.986567359373;MAZ:0.971958690558;NKX3-1:0.970542629431;EBF1:0.877850125978;TOPORS:0.873139074789;NANOG:0.863790156588;NR6A1:0.854951522027;TFAP2{A,C}:0.851061723189;FOXP1:0.807150794923;HSF1,2:0.80675870692;GTF2A1,2:0.793143513239;SRF:0.791096311782;ZFP161:0.791074773264;PAX4:0.789583834166;TFDP1:0.78937646214;SP1:0.770985749395;ALX1:0.767263337494;NFY{A,B,C}:0.766121495646;PATZ1:0.755035626736;NKX6-1,2:0.730526080747;UFEwm:0.706142050339;HOX{A4,D4}:0.705239833509;HMGA1,2:0.691477328137;KLF4:0.690149034099;CDX1,2,4:0.661003185092;MTE{core}:0.618944716642;TFAP4:0.611323107868;XCPE1{core}:0.598772957638;LHX3,4:0.577229012319;TLX1..3_NFIC{dimer}:0.572232383653;TBX4,5:0.563083975299;POU1F1:0.562024877607;PAX5:0.548086519097;RXR{A,B,G}:0.542959147035;GATA4:0.525929603469;HIC1:0.505702212467;AIRE:0.496979996418;GFI1B:0.474757190642;GZF1:0.472325984183;SOX{8,9,10}:0.470693927015;TFCP2:0.468807861925;ALX4:0.466284813849;TFAP2B:0.45834922278;ONECUT1,2:0.443670566793;HOXA9_MEIS1:0.435776342358;E2F1..5:0.434129269946;PRDM1:0.41562226889;ZBTB16:0.412511698817;NRF1:0.38578630303;OCT4_SOX2{dimer}:0.385014133554;POU5F1:0.378392148674;GTF2I:0.360334479595;VSX1,2:0.357302165802;EN1,2:0.346137223137;HOX{A5,B5}:0.328150817953;ELK1,4_GABP{A,B1}:0.311709549872;IKZF2:0.310945372805;ZNF143:0.297286345368;NHLH1,2:0.28414863142;STAT1,3:0.283985855545;TAL1_TCF{3,4,12}:0.279469497968;NFATC1..3:0.276019552821;LEF1_TCF7_TCF7L1,2:0.273928567999;PAX8:0.27047127162;GLI1..3:0.257165729603;FOXM1:0.254237943516;RBPJ:0.22119963359;HNF4A_NR2F1,2:0.214571811239;MYFfamily:0.185035885053;FOXD3:0.184259951513;BREu{core}:0.18413682219;CRX:0.183277944162;MTF1:0.178185301217;POU3F1..4:0.177157664163;DBP:0.173202714299;MYOD1:0.172032714547;TBP:0.166736484599;PITX1..3:0.164346108041;RFX1:0.161351455279;IKZF1:0.153669147929;ZBTB6:0.141031536984;MED-1{core}:0.121366007283;PBX1:0.096855162258;RREB1:0.087525490962;FOSL2:0.0868794406613;ADNP_IRX_SIX_ZHX:0.0856253862067;POU6F1:0.070349046621;NKX3-2:0.0598187571774;ZNF148:0.0588796975541;NANOG{mouse}:0.0434698128788;RUNX1..3:0.0177787025732;MYBL2:0.00122360595904;HOX{A6,A7,B6,B7}:-0.0275244931744;MYB:-0.0547049556886;FOX{I1,J2}:-0.0634775215464;AHR_ARNT_ARNT2:-0.0643899789147;REST:-0.0659670284567;BACH2:-0.0694535419039;YY1:-0.0727179010475;ESR1:-0.0742291382562;PRRX1,2:-0.0847094947097;JUN:-0.110306274824;RFX2..5_RFXANK_RFXAP:-0.112545128491;POU2F1..3:-0.1271524939;XBP1:-0.149104969145;SMAD1..7,9:-0.154809802652;FOXP3:-0.162297763388;ZNF423:-0.167798009915;FOS_FOS{B,L1}_JUN{B,D}:-0.175661112429;FOXA2:-0.180166704282;GCM1,2:-0.183509597698;LMO2:-0.187572253614;HNF1A:-0.197146492209;ARID5B:-0.206074838022;TP53:-0.214884565297;ATF6:-0.222369642614;SPZ1:-0.223817319933;SNAI1..3:-0.230344626026;TGIF1:-0.237273334648;RXRA_VDR{dimer}:-0.243192811716;HMX1:-0.243622171925;NFE2L1:-0.256787334805;NFE2L2:-0.278724407289;ELF1,2,4:-0.279671858607;CUX2:-0.286807630185;NFE2:-0.315935636503;ESRRA:-0.31593796056;SOX5:-0.324431815899;ATF4:-0.330090204061;STAT2,4,6:-0.339479638602;ZEB1:-0.347801077874;MEF2{A,B,C,D}:-0.355167372975;EP300:-0.372101923577;AR:-0.385884403033;NFKB1_REL_RELA:-0.39314088177;PAX6:-0.402984826373;PAX3,7:-0.405380168776;SPI1:-0.407638234453;ATF2:-0.410856802225;IRF1,2:-0.417447948187;TLX2:-0.421169388855;HIF1A:-0.42840375229;RORA:-0.430810000495;STAT5{A,B}:-0.442131429368;CREB1:-0.449430463038;SPIB:-0.46304636847;FOX{D1,D2}:-0.478990987807;DMAP1_NCOR{1,2}_SMARC:-0.482734769574;FOXN1:-0.496122795015;FOXL1:-0.500430701069;BPTF:-0.500914339496;HLF:-0.501018730799;GATA6:-0.524679709476;FOXO1,3,4:-0.527560329068;TEF:-0.538372543259;ETS1,2:-0.543512389076;NR1H4:-0.544551803586;NFIX:-0.566792185741;IRF7:-0.583642455043;SREBF1,2:-0.634725772324;ATF5_CREB3:-0.644407416571;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.6559467869;PAX2:-0.656398348561;FOXQ1:-0.666050090356;bHLH_family:-0.693794695;NR5A1,2:-0.711825222893;CEBPA,B_DDIT3:-0.716925772625;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.761869734056;MAFB:-0.799956520454;NFIL3:-0.807287920663;NKX2-2,8:-0.840580501984;FOX{F1,F2,J1}:-0.92779777671;ZNF238:-0.98053778508;PDX1:-1.0097874921;PPARG:-1.12657831039;HAND1,2:-1.39108199833;HBP1_HMGB_SSRP1_UBTF:-1.40457682808;HES1:-1.6621366909
 
|xref=
 
|xref=
 +
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11399-118D4;search_select_hide=table117:FF:11399-118D4
 
}}
 
}}

Latest revision as of 08:58, 4 June 2020

Name:Ciliary Epithelial Cells, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12009
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueeye
dev stagefetus
sexunknown
agefetal
cell typeciliated epithelial cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number3062
catalog numberSC6585
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005448
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12009 CAGE DRX008208 DRR009080
Accession ID Hg19

Library idBAMCTSS
CNhs12009 DRZ000505 DRZ001890
Accession ID Hg38

Library idBAMCTSS
CNhs12009 DRZ011855 DRZ013240
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005448
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10014.GTGAAA sRNA-Seq DRX037241 DRR041607
Accession ID Hg19

Library idBAMCTSS
SRhi10014.GTGAAA DRZ007249


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0858
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.213
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0366
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.0366
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0413
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0366
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.00693
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0366
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19--0.0592
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0366
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.0703
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0352
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.176
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.0366
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.0366
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.00183
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.0725
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory--0.0128
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.019
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.102
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.162
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.242
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0703
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0703
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.00108
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.561
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.313
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.00114
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.253
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.348
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs12009

Jaspar motif P-value
MA0002.2 0.011
MA0003.1 0.0495
MA0004.1 0.1
MA0006.1 0.465
MA0007.1 0.267
MA0009.1 0.33
MA0014.1 0.277
MA0017.1 0.0258
MA0018.2 0.399
MA0019.1 0.734
MA0024.1 0.0446
MA0025.1 0.778
MA0027.1 0.744
MA0028.1 0.774
MA0029.1 0.532
MA0030.1 0.00342
MA0031.1 0.00114
MA0035.2 0.0502
MA0038.1 0.0262
MA0039.2 0.564
MA0040.1 0.205
MA0041.1 0.274
MA0042.1 0.163
MA0043.1 0.31
MA0046.1 0.514
MA0047.2 7.68234e-5
MA0048.1 0.252
MA0050.1 0.00112
MA0051.1 0.00816
MA0052.1 0.0518
MA0055.1 0.851
MA0057.1 0.466
MA0058.1 0.0443
MA0059.1 0.0519
MA0060.1 1.26543e-5
MA0061.1 0.00133
MA0062.2 0.226
MA0065.2 0.00402
MA0066.1 0.233
MA0067.1 0.0378
MA0068.1 0.0073
MA0069.1 0.739
MA0070.1 0.965
MA0071.1 0.133
MA0072.1 0.486
MA0073.1 0.782
MA0074.1 0.293
MA0076.1 0.804
MA0077.1 0.0802
MA0078.1 0.37
MA0079.2 0.764
MA0080.2 6.08542e-12
MA0081.1 0.0975
MA0083.1 0.00278
MA0084.1 0.474
MA0087.1 0.394
MA0088.1 0.0309
MA0090.1 0.00685
MA0091.1 0.0496
MA0092.1 0.161
MA0093.1 0.127
MA0099.2 2.95288e-5
MA0100.1 0.867
MA0101.1 0.0407
MA0102.2 0.00199
MA0103.1 0.111
MA0104.2 0.0268
MA0105.1 2.11274e-6
MA0106.1 0.306
MA0107.1 0.00369
MA0108.2 0.00522
MA0111.1 0.494
MA0112.2 2.01095e-5
MA0113.1 0.0325
MA0114.1 0.0377
MA0115.1 0.288
MA0116.1 4.42022e-5
MA0117.1 0.699
MA0119.1 0.312
MA0122.1 0.999
MA0124.1 0.975
MA0125.1 0.152
MA0131.1 0.743
MA0135.1 0.215
MA0136.1 2.73582e-13
MA0137.2 0.37
MA0138.2 0.2
MA0139.1 0.211
MA0140.1 0.0315
MA0141.1 0.0265
MA0142.1 0.103
MA0143.1 0.282
MA0144.1 0.256
MA0145.1 0.325
MA0146.1 0.147
MA0147.1 0.0485
MA0148.1 5.69592e-4
MA0149.1 0.0407
MA0150.1 2.1166e-4
MA0152.1 0.395
MA0153.1 0.828
MA0154.1 0.00209
MA0155.1 0.706
MA0156.1 1.75609e-5
MA0157.1 0.0231
MA0159.1 0.0145
MA0160.1 0.0131
MA0162.1 0.236
MA0163.1 6.6888e-7
MA0164.1 0.834
MA0258.1 0.00299
MA0259.1 0.225



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs12009

Novel motif P-value
1 0.0536
10 0.1
100 0.978
101 0.7
102 0.501
103 0.193
104 0.742
105 0.168
106 0.0872
107 0.993
108 0.511
109 0.0605
11 0.0497
110 0.343
111 0.00424
112 0.0156
113 0.672
114 0.0419
115 0.343
116 0.793
117 0.173
118 0.228
119 0.353
12 0.431
120 0.423
121 0.814
122 0.521
123 0.0855
124 0.3
125 0.642
126 0.146
127 0.195
128 0.245
129 0.167
13 0.346
130 0.305
131 0.966
132 0.818
133 0.574
134 0.805
135 0.00827
136 0.396
137 0.181
138 0.166
139 0.128
14 0.793
140 0.376
141 0.148
142 0.435
143 0.26
144 0.827
145 0.509
146 0.509
147 0.777
148 0.0075
149 0.0588
15 0.0808
150 0.701
151 0.195
152 0.364
153 0.216
154 0.793
155 0.021
156 0.0374
157 0.638
158 0.0315
159 0.793
16 0.327
160 0.143
161 0.491
162 0.241
163 0.389
164 0.252
165 0.243
166 0.211
167 0.682
168 0.459
169 0.00985
17 0.132
18 0.063
19 0.296
2 0.564
20 0.773
21 0.972
22 0.215
23 0.137
24 0.336
25 0.271
26 0.223
27 0.345
28 0.947
29 0.0933
3 0.17
30 0.936
31 0.576
32 0.554
33 0.25
34 0.639
35 0.232
36 0.0137
37 0.0931
38 0.146
39 0.652
4 0.747
40 0.0518
41 0.0256
42 0.336
43 0.0849
44 0.698
45 0.545
46 0.0621
47 0.148
48 0.182
49 0.0514
5 0.146
50 0.692
51 0.5
52 0.565
53 0.43
54 0.418
55 0.547
56 0.468
57 0.404
58 0.121
59 0.135
6 0.911
60 0.0816
61 0.232
62 0.0628
63 0.15
64 0.183
65 0.157
66 0.911
67 0.714
68 0.158
69 0.66
7 0.231
70 0.0128
71 0.0732
72 0.111
73 0.137
74 0.31
75 0.0319
76 0.187
77 0.178
78 0.382
79 0.815
8 0.314
80 0.163
81 0.343
82 0.0379
83 0.573
84 0.313
85 0.0366
86 0.179
87 0.46
88 0.884
89 0.229
9 0.352
90 0.236
91 0.897
92 0.177
93 0.0267
94 0.0712
95 0.0781
96 0.0911
97 0.866
98 0.0352
99 0.267



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs12009


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000064 (ciliated cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000710 (neurecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000067 (ciliated epithelial cell)
0005012 (multi-ciliated epithelial cell)
0002304 (non-pigmented ciliary epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000970 (eye)
0000019 (camera-type eye)
0000483 (epithelium)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000020 (sense organ)
0010371 (ecto-epithelium)
0002203 (vasculature of eye)
0001768 (uvea)
0000488 (atypical epithelium)
0007625 (pigment epithelium of eye)
0001032 (sensory system)
0002049 (vasculature)
0002200 (vasculature of head)
0006876 (vasculature of organ)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001778 (ciliary epithelium)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0004535 (cardiovascular system)
0002104 (visual system)
0001801 (anterior segment of eyeball)
0004456 (entire sense organ system)
0001456 (face)
0001775 (ciliary body)
0010230 (eyeball of camera-type eye)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000040 (human ciliary epithelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)