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Difference between revisions of "FF:11400-118D5"

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{{f5samples
 
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001638,UBERON:0000483,UBERON:0000926,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000025,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0003914,UBERON:0002050,UBERON:0005423,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0005291,UBERON:0000487,UBERON:0001981,UBERON:0003920,UBERON:0002049,UBERON:0001986,UBERON:0004638,UBERON:0007500,UBERON:0006598,UBERON:0007798,UBERON:0004852,UBERON:0002532,UBERON:0002066,UBERON:0004535,UBERON:0004537,UBERON:0004582,UBERON:0003081,UBERON:0001009,UBERON:0006603,UBERON:0004872,UBERON:0006965
+
|DRA_sample_Accession=CAGE@SAMD00005667
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000548,CL:0000012,CL:0002321,CL:0000063,CL:0000066,CL:0002371,CL:0000076,CL:0000115,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000220,CL:0000004,CL:0000255,CL:0000071,CL:0000222,CL:0002543,CL:0002618,CL:0002546
+
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005667
 +
|accession_numbers=CAGE;DRX008233;DRR009105;DRZ000530;DRZ001915;DRZ011880;DRZ013265
 +
|accession_numbers_RNASeq=sRNA-Seq;DRX037105;DRR041471;DRZ007113
 +
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001638,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0000487,UBERON:0010260,UBERON:0003920,UBERON:0004638,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0002066,UBERON:0004535,UBERON:0004537,UBERON:0004582,UBERON:0001009
 +
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:0002543,CL:0002618
 
|ancestors_in_disease_facet=
 
|ancestors_in_disease_facet=
 +
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000046,FF:0000001,FF:0000052,FF:0000247
 
|comment=
 
|comment=
 
|created_by=
 
|created_by=
 
|creation_date=
 
|creation_date=
 +
|data_phase=2
 +
|datafreeze_phase=2
 
|def=
 
|def=
 
|expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.30!260.92!SOX18;;chr8:10588010..10588030,-!p1@SOX7!2.07!116.22!SOX7;;chr21:39870339..39870443,-!p1@ERG!2.04!108.11!ERG;;chr18:53068911..53068935,-!p4@TCF4!1.76!63.51!TCF4;;chr3:169381420..169381535,-!p1@MECOM!1.74!62.16!MECOM;;chr12:96588368..96588394,+!p3@ELK3!1.71!129.84!ELK3;;chr17:6926362..6926377,+!p1@BCL6B!1.59!37.50!BCL6B;;chr8:55370487..55370503,+!p1@SOX17!1.48!29.50!SOX17;;chr12:66218255..66218304,+!p3@HMGA2!1.45!71.40!HMGA2;;chr7:27205106..27205134,-!p2@HOXA9!1.45!27.25!HOXA9;;chr10:94449703..94449718,+!p1@HHEX!1.38!87.39!HHEX;;chr12:66218183..66218209,+!p4@HMGA2!1.36!41.89!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.36!31.64!HMGA2;;chr6:34204921..34204939,+!p3@HMGA1!1.32!579.95!HMGA1;;chr7:27205136..27205164,-!p1@HOXA9!1.32!19.93!HOXA9;;chr18:22932080..22932170,-!p1@ZNF521!1.28!75.90!ZNF521;;chr13:72441315..72441454,-!p1@DACH1!1.25!33.67!DACH1;;chr8:106330656..106330684,+!p1@ZFPM2!1.22!40.65!ZFPM2;;chr7:27192185..27192209,-!p1@HOXA3!1.22!15.77!HOXA3;;chr9:14314131..14314147,-!p2@NFIB!1.19!79.95!NFIB;;chr3:128206762..128206781,-!p2@GATA2!1.17!84.23!GATA2;;chr17:46682321..46682362,-!p1@HOXB6!1.17!13.74!HOXB6;;chr7:15726243..15726293,-!p2@MEOX2!1.17!13.63!MEOX2;;chr17:46655672..46655697,-!p3@HOXB4!1.15!13.29!HOXB4;;chr20:50159198..50159299,-!p1@NFATC2!1.13!18.47!NFATC2;;chr19:46801639..46801699,+!p1@HIF3A!1.13!12.39!HIF3A;;chr6:28321971..28321995,-!p1@ZNF323!1.10!11.49!ZNF323;;chr18:53068982..53068993,-!p20@TCF4!1.05!10.14!TCF4;;chr5:71803177..71803255,-!p1@ZNF366!1.03!9.68!ZNF366;;chr19:13213511..13213545,-!p2@LYL1!1.02!10.36!LYL1;;chr9:16705069..16705086,-!p3@BNC2!1.02!9.46!BNC2;;chr6:34204672..34204692,+!p1@HMGA1!1.00!1041.32!HMGA1;;chr12:66218598..66218645,+!p2@HMGA2!1.00!42.23!HMGA2;;chr20:50721803..50721857,-!p2@ZFP64!1.00!14.19!ZFP64;;chr2:176994408..176994492,+!p1@HOXD8!0.98!8.56!HOXD8;;chr16:86600426..86600441,+!p1@FOXC2!0.97!20.83!FOXC2;;chr17:46687959..46688007,-!p2@HOXB7!0.97!11.71!HOXB7;;chr12:66218152..66218174,+!p10@HMGA2!0.97!9.01!HMGA2;;chr19:13213399..13213414,-!p6@LYL1!0.97!8.33!LYL1;;chr5:88178983..88179012,-!p1@MEF2C!0.96!64.98!MEF2C;;chr7:15726296..15726315,-!p1@MEOX2!0.95!7.88!MEOX2;;chr7:115670804..115670825,-!p1@TFEC!0.91!7.09!TFEC;;chr11:128563948..128564003,+!p1@FLI1!0.90!86.94!FLI1;;chr10:94449675..94449694,+!p2@HHEX!0.90!19.59!HHEX;;chr2:46524537..46524553,+!p1@EPAS1!0.89!693.12!EPAS1;;chr15:96873984..96873999,+!p3@NR2F2!0.89!52.14!NR2F2;;chr10:31288370..31288393,-!p3@ZNF438!0.89!6.76!ZNF438;;chr19:53496768..53496799,-!p1@ZNF702P!0.87!10.25!ZNF702P;;chr10:31288398..31288455,-!p2@ZNF438!0.87!7.66!ZNF438;;chr3:168864315..168864339,-!p2@MECOM!0.86!10.47!MECOM;;chr12:66218836..66218888,+!p1@HMGA2!0.85!60.81!HMGA2;;chr12:66218378..66218401,+!p6@HMGA2!0.85!9.80!HMGA2;;chr9:14314566..14314618,-!p1@NFIB!0.83!74.89!NFIB;;chr12:2986206..2986258,-!p2@FOXM1!0.83!37.50!FOXM1;;chr9:14314106..14314119,-!p5@NFIB!0.83!10.81!NFIB;;chrY:21906594..21906622,-!p1@KDM5D!0.83!5.74!KDM5D;;chr18:53177984..53178004,-!p17@TCF4!0.82!5.63!TCF4;;chr13:72441506..72441562,-!p3@DACH1!0.82!5.63!DACH1;;chr5:88179195..88179224,-!p3@MEF2C!0.81!9.01!MEF2C;;chr17:46688334..46688385,-!p1@HOXB7!0.81!8.11!HOXB7;;chr17:46690839..46690884,-!p1@HOXB8!0.81!5.41!HOXB8;;chr20:42295745..42295765,+!p1@MYBL2!0.80!94.59!MYBL2;;chr12:2986275..2986363,-!p1@FOXM1!0.80!58.45!FOXM1;;chr17:46655704..46655718,-!p2@HOXB4!0.80!8.22!HOXB4;;chr2:177053386..177053402,+!p1@HOXD1!0.80!5.29!HOXD1;;chrX:66763815..66763854,+!p2@AR!0.79!6.98!AR;;chr3:25469815..25469866,+!p3@RARB!0.79!5.18!RARB;;chr18:52989565..52989623,-!p9@TCF4!0.78!6.64!TCF4;;chr1:47695003..47695042,-!p2@TAL1!0.78!5.07!TAL1;;chr15:96873921..96873946,+!p1@NR2F2!0.77!153.04!NR2F2;;chr1:209979467..209979494,-!p1@IRF6!0.77!5.63!IRF6;;chrY:2803415..2803468,+!p1@ZFY!0.77!4.84!ZFY;;chr7:27224842..27224872,-!p1@HOXA11!0.77!4.84!HOXA11;;chr20:42295713..42295738,+!p2@MYBL2!0.75!30.41!MYBL2;;chr3:168865194..168865245,-!p3@MECOM!0.75!6.19!MECOM;;chr13:72441074..72441172,-!p2@DACH1!0.75!4.62!DACH1;;chr6:130339710..130339745,+!p1@L3MBTL3!0.74!39.86!L3MBTL3;;chr18:19749541..19749557,+!p1@GATA6!0.74!15.54!GATA6;;chrX:66763856..66763896,+!p1@AR!0.74!6.76!AR;;chr5:176738887..176738934,-!p1@MXD3!0.72!31.64!MXD3;;chr8:93115584..93115642,-!p5@RUNX1T1!0.72!4.28!RUNX1T1;;chr18:53255415..53255491,-!p1@TCF4!0.71!39.19!TCF4;;chr4:299227..299272,-!p1@ZNF732!0.71!4.17!ZNF732;;chr8:106330696..106330719,+!p2@ZFPM2!0.70!5.29!ZFPM2;;chr18:53257001..53257015,-!p5@TCF4!0.69!7.21!TCF4;;chr11:113930291..113930339,+!p2@ZBTB16!0.69!6.76!ZBTB16;;chr17:41622925..41622976,-!p3@ETV4!0.69!6.08!ETV4;;chr20:42543441..42543497,+!p1@TOX2!0.68!19.37!TOX2;;chr20:42543506..42543549,+!p2@TOX2!0.68!9.91!TOX2;;chr10:45496320..45496336,+!p3@ZNF22!0.68!3.83!ZNF22;;chr1:205601064..205601087,-!p4@ELK4!0.67!7.77!ELK4;;chr11:113930425..113930471,+!p1@ZBTB16!0.67!5.63!ZBTB16;;chr1:221052840..221052875,+!p4@HLX!0.67!4.50!HLX;;chr12:80084018..80084035,-!p17@PAWR!0.67!3.72!PAWR;;chr17:41623692..41623715,-!p1@ETV4!0.66!17.45!ETV4;;chr12:66218003..66218018,+!p9@HMGA2!0.66!4.50!HMGA2;;chr7:27170359..27170381,-!p1@HOXA4!0.66!3.60!HOXA4;;chr7:27183263..27183284,-!p2@HOXA5!0.66!3.60!HOXA5;;chr7:27183291..27183324,-!p1@HOXA5!0.66!3.60!HOXA5;;chr3:168865250..168865272,-!p5@MECOM!0.66!3.60!MECOM;;chr13:41240737..41240787,-!p1@FOXO1!0.65!48.76!FOXO1;;chr5:88179017..88179046,-!p2@MEF2C!0.65!16.10!MEF2C;;chr4:146402843..146402864,+!p3@SMAD1!0.65!7.54!SMAD1;;chr7:27169801..27169844,-!p2@HOXA4!0.65!3.49!HOXA4;;chr1:47697539..47697573,-!p3@TAL1!0.65!3.49!TAL1;;chr17:46687935..46687950,-!p3@HOXB7!0.65!3.49!HOXB7;;chr19:13213555..13213568,-!p5@LYL1!0.65!3.49!LYL1;;chr9:14314066..14314075,-!p11@NFIB!0.65!3.49!NFIB;;chr13:41240717..41240735,-!p2@FOXO1!0.64!26.58!FOXO1;;chr12:3069037..3069119,+!p2@TEAD4!0.64!13.29!TEAD4;;chr18:22932004..22932021,-!p2@ZNF521!0.64!3.38!ZNF521;;chr18:53068940..53068951,-!p21@TCF4!0.64!3.38!TCF4;;chr19:49865646..49865718,-!p1@TEAD2!0.63!33.22!TEAD2;;chr12:80084167..80084197,-!p5@PAWR!0.63!8.67!PAWR;;chr9:14314522..14314556,-!p3@NFIB!0.63!8.67!NFIB;;chr19:45260775..45260838,+!p5@BCL3!0.63!4.50!BCL3;;chr1:221052733..221052749,+!p2@HLX!0.63!4.50!HLX;;chr10:94451574..94451587,+!p6@HHEX!0.63!3.27!HHEX;;chr9:116638565..116638606,+!p1@ZNF618!0.62!15.77!ZNF618;;chr17:6926381..6926392,+!p2@BCL6B!0.62!3.15!BCL6B;;chr15:96874012..96874042,+!p2@NR2F2!0.61!33.45!NR2F2;;chr1:221052776..221052799,+!p1@HLX!0.61!6.08!HLX;;chr1:214161272..214161322,+!p1@PROX1!0.61!4.62!PROX1;;chr2:25475120..25475176,-!p2@DNMT3A!0.61!4.39!DNMT3A;;chr20:590944..590960,-!p1@TCF15!0.61!3.04!TCF15;;chr7:27196267..27196311,-!p1@HOXA7!0.61!3.04!HOXA7;;chr19:58341656..58341694,+!p5@ZNF587!0.60!3.72!ZNF587;;chr1:221052994..221053008,+!p6@HLX!0.60!3.72!HLX;;chr1:205601093..205601158,-!p1@ELK4!0.59!31.19!ELK4;;chr17:41623009..41623053,-!p4@ETV4!0.59!5.07!ETV4;;chr10:8096631..8096660,+!p1@GATA3!0.59!3.60!GATA3;;chr12:66218420..66218439,+!p12@HMGA2!0.59!2.93!HMGA2;;chr2:177001290..177001315,+!p1@HOXD3!0.59!2.93!HOXD3;;chr2:238536207..238536290,+!p2@LRRFIP1!0.58!33.11!LRRFIP1;;chr18:77160282..77160343,+!p2@NFATC1!0.58!21.17!NFATC1;;chr15:90544532..90544563,+!p1@ZNF710!0.58!6.42!ZNF710;;chr19:53496806..53496848,-!p2@ZNF702P!0.58!4.62!ZNF702P;;chr11:19262421..19262455,-!p3@E2F8!0.58!2.82!E2F8;;chr7:27224795..27224840,-!p2@HOXA11!0.58!2.82!HOXA11;;chr17:46691732..46691766,-!p4@HOXB8!0.58!2.82!HOXB8;;chr12:77459306..77459365,-!p1@E2F7!0.57!41.78!E2F7;;chr12:27485785..27485816,+!p1@ARNTL2!0.57!22.97!ARNTL2;;chr22:42666593..42666623,-!p@chr22:42666593..42666623,-!0.57!7.09!TCF20;;chr11:19263192..19263222,-!p2@E2F8!0.57!3.49!E2F8;;chr11:128562372..128562397,+!p4@FLI1!0.57!2.70!FLI1;;chr2:16080659..16080685,+!p1@MYCN!0.57!2.70!MYCN;;chr18:22931979..22931992,-!p3@ZNF521!0.57!2.70!ZNF521;;chr7:27196217..27196246,-!p2@HOXA7!0.57!2.70!HOXA7;;chr15:96873861..96873872,+!p9@NR2F2!0.56!6.31!NR2F2;;chr3:33482052..33482116,-!p2@UBP1!0.56!4.50!UBP1;;chr4:146402795..146402816,+!p7@SMAD1!0.56!3.83!SMAD1;;chr19:13213465..13213478,-!p7@LYL1!0.56!2.59!LYL1;;chr6:28321909..28321965,-!p3@ZNF323!0.56!2.59!ZNF323;;chr3:71114066..71114114,-!p1@FOXP1!0.55!65.88!FOXP1;;chr12:27485823..27485868,+!p2@ARNTL2!0.55!12.61!ARNTL2;;chr1:61548069..61548102,+!p3@NFIA!0.55!7.21!NFIA;;chr12:3068544..3068597,+!p1@TEAD4!0.54!18.36!TEAD4;;chr17:41277372..41277418,-!p1@BRCA1!0.54!10.92!BRCA1;;chr12:3068501..3068515,+!p4@TEAD4!0.54!4.84!TEAD4;;chr11:19263160..19263176,-!p1@E2F8!0.54!3.04!E2F8;;chr22:19748231..19748317,+!p1@TBX1!0.54!2.48!TBX1;;chr18:53068893..53068902,-!p28@TCF4!0.54!2.48!TCF4;;chr15:57210961..57211012,+!p3@TCF12!0.53!9.23!TCF12;;chr8:145669791..145669834,-!p1@TONSL!0.53!8.22!TONSL;;chr6:130339753..130339762,+!p2@L3MBTL3!0.53!3.04!L3MBTL3;;chr5:88180342..88180365,-!p10@MEF2C!0.53!2.36!MEF2C;;chr7:27213893..27213954,-!p1@HOXA10!0.53!2.36!HOXA10;;chr3:168864383..168864400,-!p7@MECOM!0.53!2.36!MECOM;;chr6:126112074..126112144,+!p1@NCOA7!0.52!39.86!NCOA7;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.52!13.06!TAL1;;chr6:157099198..157099221,+!p3@ARID1B!0.52!9.35!ARID1B;;chr1:8877735..8877760,-!p8@RERE!0.52!7.43!RERE;;chr1:8763296..8763339,-!p9@RERE!0.52!6.87!RERE;;chr18:52989031..52989079,-!p2@TCF4!0.52!6.42!TCF4;;chr3:114343826..114343869,-!p4@ZBTB20!0.52!5.41!ZBTB20;;chr20:50179368..50179392,-!p2@NFATC2!0.52!3.27!NFATC2;;chr7:26191809..26191890,+!p1@NFE2L3!0.51!14.08!NFE2L3;;chr7:149470641..149470694,-!p1@ZNF467!0.51!12.95!ZNF467;;chr16:1429627..1429662,-!p2@UNKL!0.51!8.00!UNKL;;chr12:27485762..27485776,+!p3@ARNTL2!0.51!7.32!ARNTL2;;chr12:66218923..66218934,+!p14@HMGA2!0.51!2.25!HMGA2;;chr1:47696918..47696935,-!p6@TAL1!0.51!2.25!TAL1;;chr4:146402827..146402839,+!p10@SMAD1!0.51!2.25!SMAD1;;chr7:139741594..139741615,-!p5@PARP12!0.51!2.25!PARP12;;chr6:31126291..31126399,+!p1@TCF19!0.50!27.03!TCF19;;chr19:1592714..1592762,-!p1@MBD3!0.50!21.40!MBD3;;chr3:178789522..178789564,-!p2@ZMAT3!0.50!20.95!ZMAT3;;chr1:205601000..205601055,-!p2@ELK4!0.50!11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 +
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000071;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000115;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002139;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002543;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002618;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000487;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001638;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006914;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010260
 +
|ffid_belonging_in_development=CL:0002546,CL:0000222
 
|fonse_cell_line=
 
|fonse_cell_line=
 
|fonse_cell_line_closure=
 
|fonse_cell_line_closure=
Line 35: Line 44:
 
|fonse_treatment_closure=
 
|fonse_treatment_closure=
 
|has_quality=
 
|has_quality=
 +
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Umbilical%2520vein%252c%2520donor3.CNhs12010.11400-118D5.hg19.nobarcode.bam
 +
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Umbilical%2520vein%252c%2520donor3.CNhs12010.11400-118D5.hg19.ctss.bed.gz
 +
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Umbilical%2520vein%252c%2520donor3.CNhs12010.11400-118D5.hg19.nobarcode.rdna.fa.gz
 +
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Umbilical%2520vein%252c%2520donor3.CNhs12010.11400-118D5.hg38.nobarcode.bam
 +
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Umbilical%2520vein%252c%2520donor3.CNhs12010.11400-118D5.hg38.nobarcode.ctss.bed.gz
 
|id=FF:11400-118D5
 
|id=FF:11400-118D5
|is_a=EFO:0002091;;FF:0000002;;FF:0000210;;FF:0000247
+
|is_a=EFO:0002091;;FF:0000247
 +
|is_obsolete=
 +
|library_id=CNhs12010
 +
|library_id_phase_based=2:CNhs12010
 +
|microRNAs=
 +
|microRNAs_nn=
 +
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11400
 +
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10007.GTGGCC.11400
 +
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11400
 +
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10007.GTGGCC.11400
 
|name=Endothelial Cells - Umbilical vein, donor3
 
|name=Endothelial Cells - Umbilical vein, donor3
 
|namespace=FANTOM5
 
|namespace=FANTOM5
Line 42: Line 65:
 
|profile_cagescan=,,,
 
|profile_cagescan=,,,
 
|profile_hcage=CNhs12010,LSID837,release011,COMPLETED
 
|profile_hcage=CNhs12010,LSID837,release011,COMPLETED
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+
|profile_rnaseq=
 
|profile_srnaseq=SRhi10007,,,
 
|profile_srnaseq=SRhi10007,,,
 +
|refex=http://refex.dbcls.jp/genelist.php?lang
 +
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|rna_box=118
 
|rna_box=118
 
|rna_catalog_number=SC8005
 
|rna_catalog_number=SC8005
Line 56: Line 82:
 
|rna_tube_id=118D5
 
|rna_tube_id=118D5
 
|rna_weight_ug=10
 
|rna_weight_ug=10
 +
|rnaseq_library_id=SRhi10007.GTGGCC
 
|sample_age=fetal
 
|sample_age=fetal
 +
|sample_category=primary cells
 
|sample_cell_catalog=N/A
 
|sample_cell_catalog=N/A
 
|sample_cell_line=
 
|sample_cell_line=
Line 77: Line 105:
 
|sample_tissue=umbilical vein
 
|sample_tissue=umbilical vein
 
|top_motifs=SOX{8,9,10}:1.62923572453;PAX6:1.3942560421;RXR{A,B,G}:1.29958592718;TFDP1:1.23969900217;HBP1_HMGB_SSRP1_UBTF:1.22623559639;NFATC1..3:1.1957141566;ADNP_IRX_SIX_ZHX:1.05823570263;IKZF2:1.03144009257;NFY{A,B,C}:0.967579042057;ALX1:0.959635675944;E2F1..5:0.943909651129;TLX1..3_NFIC{dimer}:0.909182492865;ZFP161:0.867334972441;FOX{I1,J2}:0.83959676905;GATA6:0.798644607241;XCPE1{core}:0.749979030256;GFI1:0.74655117624;TFAP2{A,C}:0.739059456755;HIC1:0.698746327201;ELF1,2,4:0.693312748073;SOX17:0.69096556515;SOX2:0.667746160263;AR:0.666205805076;PBX1:0.645562082161;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.638421961191;NRF1:0.624444608873;ZNF143:0.604677448016;PAX1,9:0.596376973681;POU3F1..4:0.577168892227;MYB:0.57541028913;SOX5:0.548279494417;POU1F1:0.5445692747;ETS1,2:0.502579941289;GFI1B:0.466970992635;HMGA1,2:0.459351085413;SP1:0.448428819896;FOXD3:0.448250542705;EGR1..3:0.439020504456;GZF1:0.425347387814;TFAP4:0.393963142897;PAX8:0.341605013887;SPIB:0.339286059451;TEAD1:0.337197924381;ONECUT1,2:0.331084744768;TFAP2B:0.306616188675;GATA4:0.296059926338;NR5A1,2:0.277760037894;YY1:0.275743328892;FOXA2:0.273452796504;PITX1..3:0.272019163765;RBPJ:0.270526195696;HES1:0.261687806751;ARID5B:0.257679222905;LEF1_TCF7_TCF7L1,2:0.244602193978;EN1,2:0.24285919841;CRX:0.231589968867;STAT5{A,B}:0.207147295082;IKZF1:0.205260972196;STAT1,3:0.201944521406;HOX{A5,B5}:0.194122754428;MTE{core}:0.173984279667;CDC5L:0.17045662923;NANOG:0.123306808715;BREu{core}:0.111188087424;MED-1{core}:0.106282586932;ZBTB16:0.104792992428;ZNF423:0.0997876310437;PAX3,7:0.0815755609096;HOXA9_MEIS1:0.0799389493766;bHLH_family:0.0677976225929;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0671208103145;MAZ:0.0668484986743;POU5F1:0.065972805286;MYOD1:0.0640828639248;GTF2I:0.056931421468;RORA:0.0523390230359;FOXQ1:0.0497475789549;SPI1:0.0430805586383;NFE2L2:0.0356935124325;NKX2-3_NKX2-5:0.0264184666914;NFE2:0.0244338969577;MZF1:0.0229799725893;CREB1:0.0117866981966;T:0.0109609137738;NR3C1:0.00550113278076;BACH2:0.00333874637819;HNF4A_NR2F1,2:0.00244373633489;ZIC1..3:-0.017847160867;PRDM1:-0.0239587118603;REST:-0.0284322789819;GTF2A1,2:-0.0386610217888;TGIF1:-0.0645236788618;FOXN1:-0.0649920723261;PATZ1:-0.0681790831416;FOS_FOS{B,L1}_JUN{B,D}:-0.0702087788918;CUX2:-0.0712323569079;SREBF1,2:-0.0732403771558;TP53:-0.0799313182607;FOSL2:-0.0809682019805;STAT2,4,6:-0.0830898951747;LHX3,4:-0.0852219827587;TAL1_TCF{3,4,12}:-0.0868257808506;PAX4:-0.0906681933361;MEF2{A,B,C,D}:-0.10464221968;ZBTB6:-0.106556225746;ZNF148:-0.112125528449;ZNF238:-0.117212904508;POU6F1:-0.120114625985;NKX2-2,8:-0.134164512186;ATF6:-0.147669297922;NANOG{mouse}:-0.167766265833;TEF:-0.169007588169;OCT4_SOX2{dimer}:-0.182564102003;HNF1A:-0.194971248788;PAX5:-0.202745286166;HAND1,2:-0.220047276968;NHLH1,2:-0.229108550505;IRF1,2:-0.243341223769;GLI1..3:-0.244221896838;PRRX1,2:-0.259883896892;DMAP1_NCOR{1,2}_SMARC:-0.272272509604;UFEwm:-0.295338849429;KLF4:-0.302525373615;LMO2:-0.316935349789;TOPORS:-0.317260530805;NFIX:-0.324867666994;FOX{D1,D2}:-0.336892592417;FOX{F1,F2,J1}:-0.347197756982;NFKB1_REL_RELA:-0.361007373056;IRF7:-0.365395755772;AHR_ARNT_ARNT2:-0.369244676822;PPARG:-0.386223924277;EVI1:-0.387099113811;XBP1:-0.387927123184;HOX{A6,A7,B6,B7}:-0.389409704382;SRF:-0.394398796122;EBF1:-0.395463762677;GCM1,2:-0.397371636724;SPZ1:-0.403538343814;FOXP1:-0.413921798451;POU2F1..3:-0.416815853831;PDX1:-0.430049200567;MTF1:-0.446084450235;PAX2:-0.47097612719;FOXO1,3,4:-0.473903524968;SMAD1..7,9:-0.489226079003;HLF:-0.489250873606;AIRE:-0.512644353146;HSF1,2:-0.519733642024;ATF2:-0.522717805434;ELK1,4_GABP{A,B1}:-0.526246643766;MYBL2:-0.527541830665;CDX1,2,4:-0.537988169649;RFX1:-0.544122257073;NR1H4:-0.557952309974;CEBPA,B_DDIT3:-0.572018906294;NKX3-2:-0.578944963143;FOXL1:-0.597571838572;TLX2:-0.610709320724;ATF4:-0.611406603707;TBP:-0.626985832801;ESRRA:-0.64101562972;MYFfamily:-0.672346920745;SNAI1..3:-0.680647645673;RUNX1..3:-0.682193618398;BPTF:-0.691242327833;RREB1:-0.720534289355;FOXM1:-0.723616506498;ALX4:-0.76659497541;VSX1,2:-0.779016587239;ZNF384:-0.79086895129;DBP:-0.814080689074;JUN:-0.844185176026;NFIL3:-0.848053799126;FOXP3:-0.863919674191;ATF5_CREB3:-0.882789551638;HOX{A4,D4}:-0.886033494504;NKX3-1:-0.895309049203;ZEB1:-0.901014739806;NFE2L1:-0.952982698063;HIF1A:-0.960091005342;TFCP2:-0.976333250781;NKX6-1,2:-1.00699821062;TBX4,5:-1.01732833076;EP300:-1.03509904444;NR6A1:-1.06845207956;ESR1:-1.08083266434;NKX2-1,4:-1.11221091147;RFX2..5_RFXANK_RFXAP:-1.13522122179;MAFB:-1.13902734707;HMX1:-1.26546217937;RXRA_VDR{dimer}:-1.31045581796
 
|top_motifs=SOX{8,9,10}:1.62923572453;PAX6:1.3942560421;RXR{A,B,G}:1.29958592718;TFDP1:1.23969900217;HBP1_HMGB_SSRP1_UBTF:1.22623559639;NFATC1..3:1.1957141566;ADNP_IRX_SIX_ZHX:1.05823570263;IKZF2:1.03144009257;NFY{A,B,C}:0.967579042057;ALX1:0.959635675944;E2F1..5:0.943909651129;TLX1..3_NFIC{dimer}:0.909182492865;ZFP161:0.867334972441;FOX{I1,J2}:0.83959676905;GATA6:0.798644607241;XCPE1{core}:0.749979030256;GFI1:0.74655117624;TFAP2{A,C}:0.739059456755;HIC1:0.698746327201;ELF1,2,4:0.693312748073;SOX17:0.69096556515;SOX2:0.667746160263;AR:0.666205805076;PBX1:0.645562082161;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.638421961191;NRF1:0.624444608873;ZNF143:0.604677448016;PAX1,9:0.596376973681;POU3F1..4:0.577168892227;MYB:0.57541028913;SOX5:0.548279494417;POU1F1:0.5445692747;ETS1,2:0.502579941289;GFI1B:0.466970992635;HMGA1,2:0.459351085413;SP1:0.448428819896;FOXD3:0.448250542705;EGR1..3:0.439020504456;GZF1:0.425347387814;TFAP4:0.393963142897;PAX8:0.341605013887;SPIB:0.339286059451;TEAD1:0.337197924381;ONECUT1,2:0.331084744768;TFAP2B:0.306616188675;GATA4:0.296059926338;NR5A1,2:0.277760037894;YY1:0.275743328892;FOXA2:0.273452796504;PITX1..3:0.272019163765;RBPJ:0.270526195696;HES1:0.261687806751;ARID5B:0.257679222905;LEF1_TCF7_TCF7L1,2:0.244602193978;EN1,2:0.24285919841;CRX:0.231589968867;STAT5{A,B}:0.207147295082;IKZF1:0.205260972196;STAT1,3:0.201944521406;HOX{A5,B5}:0.194122754428;MTE{core}:0.173984279667;CDC5L:0.17045662923;NANOG:0.123306808715;BREu{core}:0.111188087424;MED-1{core}:0.106282586932;ZBTB16:0.104792992428;ZNF423:0.0997876310437;PAX3,7:0.0815755609096;HOXA9_MEIS1:0.0799389493766;bHLH_family:0.0677976225929;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0671208103145;MAZ:0.0668484986743;POU5F1:0.065972805286;MYOD1:0.0640828639248;GTF2I:0.056931421468;RORA:0.0523390230359;FOXQ1:0.0497475789549;SPI1:0.0430805586383;NFE2L2:0.0356935124325;NKX2-3_NKX2-5:0.0264184666914;NFE2:0.0244338969577;MZF1:0.0229799725893;CREB1:0.0117866981966;T:0.0109609137738;NR3C1:0.00550113278076;BACH2:0.00333874637819;HNF4A_NR2F1,2:0.00244373633489;ZIC1..3:-0.017847160867;PRDM1:-0.0239587118603;REST:-0.0284322789819;GTF2A1,2:-0.0386610217888;TGIF1:-0.0645236788618;FOXN1:-0.0649920723261;PATZ1:-0.0681790831416;FOS_FOS{B,L1}_JUN{B,D}:-0.0702087788918;CUX2:-0.0712323569079;SREBF1,2:-0.0732403771558;TP53:-0.0799313182607;FOSL2:-0.0809682019805;STAT2,4,6:-0.0830898951747;LHX3,4:-0.0852219827587;TAL1_TCF{3,4,12}:-0.0868257808506;PAX4:-0.0906681933361;MEF2{A,B,C,D}:-0.10464221968;ZBTB6:-0.106556225746;ZNF148:-0.112125528449;ZNF238:-0.117212904508;POU6F1:-0.120114625985;NKX2-2,8:-0.134164512186;ATF6:-0.147669297922;NANOG{mouse}:-0.167766265833;TEF:-0.169007588169;OCT4_SOX2{dimer}:-0.182564102003;HNF1A:-0.194971248788;PAX5:-0.202745286166;HAND1,2:-0.220047276968;NHLH1,2:-0.229108550505;IRF1,2:-0.243341223769;GLI1..3:-0.244221896838;PRRX1,2:-0.259883896892;DMAP1_NCOR{1,2}_SMARC:-0.272272509604;UFEwm:-0.295338849429;KLF4:-0.302525373615;LMO2:-0.316935349789;TOPORS:-0.317260530805;NFIX:-0.324867666994;FOX{D1,D2}:-0.336892592417;FOX{F1,F2,J1}:-0.347197756982;NFKB1_REL_RELA:-0.361007373056;IRF7:-0.365395755772;AHR_ARNT_ARNT2:-0.369244676822;PPARG:-0.386223924277;EVI1:-0.387099113811;XBP1:-0.387927123184;HOX{A6,A7,B6,B7}:-0.389409704382;SRF:-0.394398796122;EBF1:-0.395463762677;GCM1,2:-0.397371636724;SPZ1:-0.403538343814;FOXP1:-0.413921798451;POU2F1..3:-0.416815853831;PDX1:-0.430049200567;MTF1:-0.446084450235;PAX2:-0.47097612719;FOXO1,3,4:-0.473903524968;SMAD1..7,9:-0.489226079003;HLF:-0.489250873606;AIRE:-0.512644353146;HSF1,2:-0.519733642024;ATF2:-0.522717805434;ELK1,4_GABP{A,B1}:-0.526246643766;MYBL2:-0.527541830665;CDX1,2,4:-0.537988169649;RFX1:-0.544122257073;NR1H4:-0.557952309974;CEBPA,B_DDIT3:-0.572018906294;NKX3-2:-0.578944963143;FOXL1:-0.597571838572;TLX2:-0.610709320724;ATF4:-0.611406603707;TBP:-0.626985832801;ESRRA:-0.64101562972;MYFfamily:-0.672346920745;SNAI1..3:-0.680647645673;RUNX1..3:-0.682193618398;BPTF:-0.691242327833;RREB1:-0.720534289355;FOXM1:-0.723616506498;ALX4:-0.76659497541;VSX1,2:-0.779016587239;ZNF384:-0.79086895129;DBP:-0.814080689074;JUN:-0.844185176026;NFIL3:-0.848053799126;FOXP3:-0.863919674191;ATF5_CREB3:-0.882789551638;HOX{A4,D4}:-0.886033494504;NKX3-1:-0.895309049203;ZEB1:-0.901014739806;NFE2L1:-0.952982698063;HIF1A:-0.960091005342;TFCP2:-0.976333250781;NKX6-1,2:-1.00699821062;TBX4,5:-1.01732833076;EP300:-1.03509904444;NR6A1:-1.06845207956;ESR1:-1.08083266434;NKX2-1,4:-1.11221091147;RFX2..5_RFXANK_RFXAP:-1.13522122179;MAFB:-1.13902734707;HMX1:-1.26546217937;RXRA_VDR{dimer}:-1.31045581796
 +
|xref=
 +
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11400-118D5;search_select_hide=table117:FF:11400-118D5
 
}}
 
}}

Latest revision as of 08:58, 4 June 2020

Name:Endothelial Cells - Umbilical vein, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12010
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueumbilical vein
dev stagefetus
sexunknown
agefetal
cell typeblood vessel endothelial cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number5025
catalog numberSC8005
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005667
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12010 CAGE DRX008233 DRR009105
Accession ID Hg19

Library idBAMCTSS
CNhs12010 DRZ000530 DRZ001915
Accession ID Hg38

Library idBAMCTSS
CNhs12010 DRZ011880 DRZ013265
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005667
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10007.GTGGCC sRNA-Seq DRX037105 DRR041471
Accession ID Hg19

Library idBAMCTSS
SRhi10007.GTGGCC DRZ007113


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-3.111699e-4
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.463
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen1.019
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.328
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19--0.0323
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle--0.116
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0269
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0441
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.417
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8--0.00582
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth--0.0268
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.497
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0882
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0882
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.194
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.0463
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs12010

Jaspar motif P-value
MA0002.2 6.1228e-5
MA0003.1 0.43
MA0004.1 0.594
MA0006.1 0.771
MA0007.1 0.627
MA0009.1 0.673
MA0014.1 0.915
MA0017.1 0.185
MA0018.2 0.116
MA0019.1 0.0861
MA0024.1 7.53861e-6
MA0025.1 0.519
MA0027.1 0.758
MA0028.1 0.73
MA0029.1 0.274
MA0030.1 0.603
MA0031.1 0.435
MA0035.2 0.0238
MA0038.1 0.00258
MA0039.2 0.456
MA0040.1 0.668
MA0041.1 0.0351
MA0042.1 0.248
MA0043.1 0.00191
MA0046.1 0.384
MA0047.2 0.689
MA0048.1 0.163
MA0050.1 0.626
MA0051.1 0.0784
MA0052.1 0.413
MA0055.1 0.0772
MA0057.1 0.936
MA0058.1 0.631
MA0059.1 0.491
MA0060.1 2.01319e-12
MA0061.1 0.00158
MA0062.2 0.689
MA0065.2 0.029
MA0066.1 0.0389
MA0067.1 0.423
MA0068.1 0.527
MA0069.1 0.0464
MA0070.1 0.373
MA0071.1 0.694
MA0072.1 0.589
MA0073.1 0.876
MA0074.1 0.469
MA0076.1 0.654
MA0077.1 7.31875e-6
MA0078.1 0.105
MA0079.2 0.186
MA0080.2 0.0141
MA0081.1 0.259
MA0083.1 0.158
MA0084.1 0.0979
MA0087.1 0.0157
MA0088.1 0.786
MA0090.1 0.511
MA0091.1 0.343
MA0092.1 0.327
MA0093.1 0.528
MA0099.2 0.736
MA0100.1 0.368
MA0101.1 0.471
MA0102.2 0.00513
MA0103.1 0.00178
MA0104.2 0.653
MA0105.1 3.55363e-6
MA0106.1 0.438
MA0107.1 0.231
MA0108.2 0.701
MA0111.1 0.726
MA0112.2 4.07718e-6
MA0113.1 0.461
MA0114.1 0.0555
MA0115.1 0.996
MA0116.1 0.0011
MA0117.1 0.551
MA0119.1 0.761
MA0122.1 0.173
MA0124.1 0.158
MA0125.1 0.62
MA0131.1 0.387
MA0135.1 0.471
MA0136.1 0.0888
MA0137.2 0.529
MA0138.2 0.649
MA0139.1 0.663
MA0140.1 0.103
MA0141.1 0.483
MA0142.1 0.663
MA0143.1 0.821
MA0144.1 0.844
MA0145.1 0.326
MA0146.1 0.268
MA0147.1 0.647
MA0148.1 0.353
MA0149.1 0.071
MA0150.1 0.336
MA0152.1 0.883
MA0153.1 0.533
MA0154.1 6.30876e-4
MA0155.1 0.696
MA0156.1 0.0242
MA0157.1 0.395
MA0159.1 0.0143
MA0160.1 0.451
MA0162.1 0.322
MA0163.1 8.29119e-6
MA0164.1 0.822
MA0258.1 2.11774e-4
MA0259.1 0.71



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs12010

Novel motif P-value
1 0.216
10 0.139
100 0.85
101 0.216
102 0.706
103 0.433
104 0.732
105 0.59
106 0.00474
107 0.35
108 0.666
109 0.246
11 0.144
110 0.947
111 0.478
112 0.13
113 0.154
114 0.146
115 0.871
116 0.286
117 0.581
118 0.45
119 0.242
12 0.918
120 0.58
121 0.132
122 0.748
123 0.0207
124 0.0193
125 0.31
126 0.414
127 0.385
128 0.0588
129 0.983
13 0.528
130 0.193
131 0.0631
132 0.794
133 0.965
134 0.898
135 0.885
136 0.0612
137 0.108
138 0.914
139 6.24976e-4
14 0.37
140 0.172
141 0.6
142 0.08
143 0.103
144 0.505
145 0.368
146 0.906
147 0.63
148 0.0119
149 0.525
15 0.192
150 0.672
151 0.283
152 0.895
153 0.0257
154 0.544
155 0.212
156 0.154
157 0.0394
158 0.18
159 0.335
16 0.112
160 0.746
161 0.128
162 0.645
163 0.882
164 0.922
165 0.411
166 0.506
167 0.0699
168 0.668
169 0.121
17 0.186
18 0.0279
19 0.268
2 0.608
20 0.578
21 0.4
22 0.511
23 0.0939
24 0.535
25 0.453
26 0.087
27 0.245
28 0.406
29 0.24
3 0.0598
30 0.697
31 0.337
32 7.60701e-4
33 0.737
34 0.601
35 0.0468
36 0.89
37 0.114
38 0.643
39 0.909
4 0.488
40 0.598
41 0.96
42 0.582
43 0.09
44 0.175
45 0.614
46 0.0267
47 0.353
48 0.594
49 0.104
5 0.188
50 0.933
51 0.502
52 0.317
53 0.509
54 0.34
55 0.135
56 0.432
57 0.527
58 0.0552
59 0.171
6 0.147
60 0.0445
61 0.578
62 0.0396
63 0.367
64 0.173
65 0.176
66 0.123
67 0.652
68 0.872
69 0.552
7 0.507
70 1.46095e-4
71 0.0321
72 0.85
73 0.989
74 0.953
75 0.434
76 0.821
77 0.0529
78 0.857
79 0.0306
8 0.515
80 0.407
81 0.0775
82 0.043
83 0.894
84 0.977
85 0.0145
86 0.519
87 0.504
88 0.309
89 0.0333
9 0.709
90 0.564
91 0.888
92 0.0989
93 0.741
94 0.0209
95 0.688
96 0.351
97 0.442
98 0.255
99 0.352



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs12010


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
0002543 (vein endothelial cell)
0002618 (endothelial cell of umbilical vein)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001638 (vein)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0000487 (simple squamous epithelium)
0010260 (umbilical blood vessel)
0003920 (venous blood vessel)
0004638 (blood vessel endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0002066 (umbilical vein)
0004535 (cardiovascular system)
0004537 (blood vasculature)
0004582 (venous system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000001 (sample)
0000052 (human endothelial cell of the vein sample)
0000247 (human endothelial cell of umbilical vein sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)