FF:11400-118D5
From FANTOM5_SSTAR
| Name: | Endothelial Cells - Umbilical vein, donor3 |
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| Species: | Human (Homo sapiens) |
| Library ID: | {{{library_id}}} |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| CAGEd-oPOSSUM: | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA
link to dataset.
data
Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to
the median expression in the FANTOM5 collection is shown. Value is log10
transformed.
Analyst:NA
link to dataset.
data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this
sample. Pearson's correlation between the number of TFBSs estimated by
using the position-weight matrix for each promoter and its expression is
expressed as Z-score by taking the ones based on random position-weight
matrix, and the tail probability of the normal distribution corresponding
to the Z-score is taken as the resulting P-value. Lower P-value indicates
more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon
link to dataset.
data
library id: CNhs12010
FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in
169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon
link to dataset.
data
library id: CNhs12010
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.216 |
| 10 | 10 | 0.139 |
| 100 | 100 | 0.85 |
| 101 | 101 | 0.216 |
| 102 | 102 | 0.706 |
| 103 | 103 | 0.433 |
| 104 | 104 | 0.732 |
| 105 | 105 | 0.59 |
| 106 | 106 | 0.00474 |
| 107 | 107 | 0.35 |
| 108 | 108 | 0.666 |
| 109 | 109 | 0.246 |
| 11 | 11 | 0.144 |
| 110 | 110 | 0.947 |
| 111 | 111 | 0.478 |
| 112 | 112 | 0.13 |
| 113 | 113 | 0.154 |
| 114 | 114 | 0.146 |
| 115 | 115 | 0.871 |
| 116 | 116 | 0.286 |
| 117 | 117 | 0.581 |
| 118 | 118 | 0.45 |
| 119 | 119 | 0.242 |
| 12 | 12 | 0.918 |
| 120 | 120 | 0.58 |
| 121 | 121 | 0.132 |
| 122 | 122 | 0.748 |
| 123 | 123 | 0.0207 |
| 124 | 124 | 0.0193 |
| 125 | 125 | 0.31 |
| 126 | 126 | 0.414 |
| 127 | 127 | 0.385 |
| 128 | 128 | 0.0588 |
| 129 | 129 | 0.983 |
| 13 | 13 | 0.528 |
| 130 | 130 | 0.193 |
| 131 | 131 | 0.0631 |
| 132 | 132 | 0.794 |
| 133 | 133 | 0.965 |
| 134 | 134 | 0.898 |
| 135 | 135 | 0.885 |
| 136 | 136 | 0.0612 |
| 137 | 137 | 0.108 |
| 138 | 138 | 0.914 |
| 139 | 139 | 6.24976e-4 |
| 14 | 14 | 0.37 |
| 140 | 140 | 0.172 |
| 141 | 141 | 0.6 |
| 142 | 142 | 0.08 |
| 143 | 143 | 0.103 |
| 144 | 144 | 0.505 |
| 145 | 145 | 0.368 |
| 146 | 146 | 0.906 |
| 147 | 147 | 0.63 |
| 148 | 148 | 0.0119 |
| 149 | 149 | 0.525 |
| 15 | 15 | 0.192 |
| 150 | 150 | 0.672 |
| 151 | 151 | 0.283 |
| 152 | 152 | 0.895 |
| 153 | 153 | 0.0257 |
| 154 | 154 | 0.544 |
| 155 | 155 | 0.212 |
| 156 | 156 | 0.154 |
| 157 | 157 | 0.0394 |
| 158 | 158 | 0.18 |
| 159 | 159 | 0.335 |
| 16 | 16 | 0.112 |
| 160 | 160 | 0.746 |
| 161 | 161 | 0.128 |
| 162 | 162 | 0.645 |
| 163 | 163 | 0.882 |
| 164 | 164 | 0.922 |
| 165 | 165 | 0.411 |
| 166 | 166 | 0.506 |
| 167 | 167 | 0.0699 |
| 168 | 168 | 0.668 |
| 169 | 169 | 0.121 |
| 17 | 17 | 0.186 |
| 18 | 18 | 0.0279 |
| 19 | 19 | 0.268 |
| 2 | 2 | 0.608 |
| 20 | 20 | 0.578 |
| 21 | 21 | 0.4 |
| 22 | 22 | 0.511 |
| 23 | 23 | 0.0939 |
| 24 | 24 | 0.535 |
| 25 | 25 | 0.453 |
| 26 | 26 | 0.087 |
| 27 | 27 | 0.245 |
| 28 | 28 | 0.406 |
| 29 | 29 | 0.24 |
| 3 | 3 | 0.0598 |
| 30 | 30 | 0.697 |
| 31 | 31 | 0.337 |
| 32 | 32 | 7.60701e-4 |
| 33 | 33 | 0.737 |
| 34 | 34 | 0.601 |
| 35 | 35 | 0.0468 |
| 36 | 36 | 0.89 |
| 37 | 37 | 0.114 |
| 38 | 38 | 0.643 |
| 39 | 39 | 0.909 |
| 4 | 4 | 0.488 |
| 40 | 40 | 0.598 |
| 41 | 41 | 0.96 |
| 42 | 42 | 0.582 |
| 43 | 43 | 0.09 |
| 44 | 44 | 0.175 |
| 45 | 45 | 0.614 |
| 46 | 46 | 0.0267 |
| 47 | 47 | 0.353 |
| 48 | 48 | 0.594 |
| 49 | 49 | 0.104 |
| 5 | 5 | 0.188 |
| 50 | 50 | 0.933 |
| 51 | 51 | 0.502 |
| 52 | 52 | 0.317 |
| 53 | 53 | 0.509 |
| 54 | 54 | 0.34 |
| 55 | 55 | 0.135 |
| 56 | 56 | 0.432 |
| 57 | 57 | 0.527 |
| 58 | 58 | 0.0552 |
| 59 | 59 | 0.171 |
| 6 | 6 | 0.147 |
| 60 | 60 | 0.0445 |
| 61 | 61 | 0.578 |
| 62 | 62 | 0.0396 |
| 63 | 63 | 0.367 |
| 64 | 64 | 0.173 |
| 65 | 65 | 0.176 |
| 66 | 66 | 0.123 |
| 67 | 67 | 0.652 |
| 68 | 68 | 0.872 |
| 69 | 69 | 0.552 |
| 7 | 7 | 0.507 |
| 70 | 70 | 1.46095e-4 |
| 71 | 71 | 0.0321 |
| 72 | 72 | 0.85 |
| 73 | 73 | 0.989 |
| 74 | 74 | 0.953 |
| 75 | 75 | 0.434 |
| 76 | 76 | 0.821 |
| 77 | 77 | 0.0529 |
| 78 | 78 | 0.857 |
| 79 | 79 | 0.0306 |
| 8 | 8 | 0.515 |
| 80 | 80 | 0.407 |
| 81 | 81 | 0.0775 |
| 82 | 82 | 0.043 |
| 83 | 83 | 0.894 |
| 84 | 84 | 0.977 |
| 85 | 85 | 0.0145 |
| 86 | 86 | 0.519 |
| 87 | 87 | 0.504 |
| 88 | 88 | 0.309 |
| 89 | 89 | 0.0333 |
| 9 | 9 | 0.709 |
| 90 | 90 | 0.564 |
| 91 | 91 | 0.888 |
| 92 | 92 | 0.0989 |
| 93 | 93 | 0.741 |
| 94 | 94 | 0.0209 |
| 95 | 95 | 0.688 |
| 96 | 96 | 0.351 |
| 97 | 97 | 0.442 |
| 98 | 98 | 0.255 |
| 99 | 99 | 0.352 |
de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs12010
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000247 human endothelial cell of umbilical vein sample
Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji
link to source data
data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
0002543 (vein endothelial cell)
0002618 (endothelial cell of umbilical vein)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001638 (vein)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0000487 (simple squamous epithelium)
0010260 (umbilical blood vessel)
0003920 (venous blood vessel)
0004638 (blood vessel endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0002066 (umbilical vein)
0004535 (cardiovascular system)
0004537 (blood vasculature)
0004582 (venous system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000001 (sample)
0000052 (human endothelial cell of the vein sample)
0000247 (human endothelial cell of umbilical vein sample)
Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji
link to source data
data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)
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