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{{f5samples
 
{{f5samples
 
|DRA_sample_Accession=CAGE@SAMD00005741
 
|DRA_sample_Accession=CAGE@SAMD00005741
|accession_numbers=CAGE;DRX008320;DRR009192;DRZ000617;DRZ002002
+
|accession_numbers=CAGE;DRX008320;DRR009192;DRZ000617;DRZ002002;DRZ011967;DRZ013352
 
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000970,UBERON:0000019,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0010077,UBERON:0005389,UBERON:0000020,UBERON:0010371,UBERON:0007625,UBERON:0000484,UBERON:0001032,UBERON:0010317,UBERON:0000965,UBERON:0001803,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0002104,UBERON:0001801,UBERON:0004456,UBERON:0001456,UBERON:0010230
 
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000970,UBERON:0000019,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0010077,UBERON:0005389,UBERON:0000020,UBERON:0010371,UBERON:0007625,UBERON:0000484,UBERON:0001032,UBERON:0010317,UBERON:0000965,UBERON:0001803,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0002104,UBERON:0001801,UBERON:0004456,UBERON:0001456,UBERON:0010230
 
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0000325,CL:0000255,CL:0000306,CL:0002222,CL:0002224
 
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0000325,CL:0000255,CL:0000306,CL:0002222,CL:0002224
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|created_by=
 
|created_by=
 
|creation_date=
 
|creation_date=
|data_phase=1
+
|data_phase=2
|datafreeze_phase=1
+
|datafreeze_phase=2
 
|def=
 
|def=
 
|expression_enrichment_score=chr9:77112244..77112262,+!p1@RORB!2.44!303.04!RORB;;chr3:181429704..181429722,+!p1@SOX2!2.24!170.88!SOX2;;chr4:8873545..8873583,-!p1@HMX1!2.01!100.86!HMX1;;chr18:56940611..56940660,-!p1@RAX!2.00!98.66!RAX;;chr11:31839488..31839515,-!p3@PAX6!1.92!81.96!PAX6;;chr1:2461692..2461710,-!p1@HES5!1.87!73.15!HES5;;chr12:103351444..103351461,+!p1@ASCL1!1.85!70.25!ASCL1;;chr2:45168834..45168847,+!p2@SIX3!1.83!65.85!SIX3;;chr2:45169193..45169219,+!p3@SIX3!1.76!57.04!SIX3;;chr3:181429741..181429767,+!p2@SOX2!1.74!54.37!SOX2;;chr2:45168875..45168916,+!p1@SIX3!1.71!49.85!SIX3;;chr13:72441315..72441454,-!p1@DACH1!1.62!78.83!DACH1;;chr13:100634031..100634045,+!p1@ZIC2!1.62!40.34!ZIC2;;chr9:126774018..126774055,+!p1@LHX2!1.59!38.26!LHX2;;chr11:31832658..31832681,-!p1@PAX6!1.59!37.56!PAX6;;chr14:29235961..29236008,+!p1@FOXG1!1.56!35.24!FOXG1;;chr1:214161272..214161322,+!p1@PROX1!1.55!48.00!PROX1;;chrX:139587228..139587234,-!p1@SOX3!1.55!34.08!SOX3;;chr3:147127177..147127194,+!p2@ZIC1!1.54!33.97!ZIC1;;chr14:60975883..60975911,+!p1@SIX6!1.54!33.62!SIX6;;chr1:197886461..197886558,+!p1@LHX9!1.53!32.81!LHX9;;chr3:62358596..62358618,-!p3@FEZF2!1.50!30.95!FEZF2;;chr3:147127142..147127168,+!p1@ZIC1!1.43!25.97!ZIC1;;chr6:45296048..45296082,+!p1@RUNX2!1.41!28.52!RUNX2;;chr2:5832508..5832524,+!p1@SOX11!1.41!24.81!SOX11;;chr4:8873531..8873542,-!p4@HMX1!1.39!23.77!HMX1;;chr8:80679993..80680011,-!p1@HEY1!1.38!32.81!HEY1;;chr14:29236269..29236285,+!p3@FOXG1!1.38!22.72!FOXG1;;chr11:31832862..31832884,-!p2@PAX6!1.35!21.33!PAX6;;chr7:35293685..35293718,-!p1@TBX20!1.35!21.33!TBX20;;chrX:136648279..136648295,+!p1@ZIC3!1.33!20.40!ZIC3;;chr14:74706150..74706155,+!p1@VSX2!1.29!18.66!VSX2;;chr5:92918919..92918942,+!p1@NR2F1!1.28!78.48!NR2F1;;chr16:79634624..79634642,-!p1@MAF!1.28!69.33!MAF;;chrX:136648643..136648711,+!p2@ZIC3!1.28!18.09!ZIC3;;chr18:56940663..56940691,-!p2@RAX!1.27!17.62!RAX;;chr19:48325184..48325211,+!p1@CRX!1.26!17.39!CRX;;chr9:126774058..126774081,+!p3@LHX2!1.26!17.27!LHX2;;chr3:62358748..62358751,-!p7@FEZF2!1.26!17.16!FEZF2;;chr12:66218255..66218304,+!p3@HMGA2!1.23!42.31!HMGA2;;chr2:63277948..63277974,+!p1@OTX1!1.23!16.00!OTX1;;chr9:126773880..126773895,+!p2@LHX2!1.22!15.53!LHX2;;chr2:45169233..45169244,+!p10@SIX3!1.22!15.42!SIX3;;chr14:29234581..29234601,+!p2@FOXG1!1.21!15.19!FOXG1;;chr2:45169143..45169167,+!p5@SIX3!1.20!14.72!SIX3;;chr14:60975858..60975869,+!p2@SIX6!1.19!14.61!SIX6;;chr2:45169179..45169190,+!p8@SIX3!1.18!14.14!SIX3;;chr2:182545234..182545252,-!p1@NEUROD1!1.17!13.80!NEUROD1;;chr16:79633894..79633954,-!p3@MAF!1.15!25.16!MAF;;chr2:88752207..88752218,-!p1@FOXI3!1.15!12.98!FOXI3;;chr17:59477233..59477263,+!p1@TBX2!1.13!38.95!TBX2;;chr13:100623375..100623425,-!p1@ZIC5!1.12!12.29!ZIC5;;chr12:66218183..66218209,+!p4@HMGA2!1.10!22.26!HMGA2;;chr10:104001259..104001274,-!p1@PITX3!1.10!11.71!PITX3;;chr11:31832807..31832823,-!p4@PAX6!1.10!11.71!PAX6;;chr11:31839453..31839462,-!p9@PAX6!1.09!11.36!PAX6;;chr17:70117153..70117174,+!p1@SOX9!1.08!114.89!SOX9;;chr11:63684602..63684664,-!p1@RCOR2!1.08!22.14!RCOR2;;chr12:66218212..66218244,+!p5@HMGA2!1.07!15.53!HMGA2;;chr5:92918956..92918969,+!p4@NR2F1!1.07!11.94!NR2F1;;chr13:72441074..72441172,-!p2@DACH1!1.07!10.78!DACH1;;chr2:45168856..45168867,+!p7@SIX3!1.07!10.67!SIX3;;chr2:239148671..239148686,-!p1@HES6!1.06!38.72!HES6;;chr8:60031682..60031710,-!p2@TOX!1.06!17.16!TOX;;chr6:34204672..34204692,+!p1@HMGA1!1.04!1120.70!HMGA1;;chr17:59477197..59477212,+!p2@TBX2!1.04!17.27!TBX2;;chr12:66218598..66218645,+!p2@HMGA2!1.03!45.33!HMGA2;;chr2:71127699..71127744,+!p1@VAX2!1.03!20.17!VAX2;;chr3:147111231..147111281,+!p3@ZIC1!1.03!9.62!ZIC1;;chr8:60031619..60031676,-!p1@TOX!1.02!20.64!TOX;;chr19:46800289..46800327,+!p2@HIF3A!1.02!9.39!HIF3A;;chr19:49864746..49864780,-!p2@TEAD2!1.01!12.75!TEAD2;;chr3:25470156..25470227,+!p2@RARB!1.01!9.27!RARB;;chr13:100638100..100638115,+!p4@ZIC2!1.01!9.27!ZIC2;;chr5:124082322..124082364,-!p1@ZNF608!1.00!23.42!ZNF608;;chr2:16080659..16080685,+!p1@MYCN!1.00!9.04!MYCN;;chr3:147139053..147139112,+!p5@ZIC1!1.00!9.04!ZIC1;;chr11:31825588..31825613,-!p8@PAX6!1.00!9.04!PAX6;;chr14:24553835..24553850,-!p1@NRL!1.00!8.93!NRL;;chr14:60975644..60975673,+!p3@SIX6!0.99!8.81!SIX6;;chr3:62359214..62359232,-!p1@FEZF2!0.99!8.69!FEZF2;;chr1:151032922..151032951,+!p2@MLLT11!0.98!14.38!MLLT11;;chr19:53496768..53496799,-!p1@ZNF702P!0.98!13.33!ZNF702P;;chr20:20348740..20348757,+!p1@INSM1!0.98!8.46!INSM1;;chr14:57277178..57277203,-!p1@OTX2!0.98!8.46!OTX2;;chr11:31832610..31832639,-!p5@PAX6!0.97!8.23!PAX6;;chr12:54779511..54779577,-!p5@ZNF385A!0.96!8.12!ZNF385A;;chr1:151032860..151032918,+!p1@MLLT11!0.95!98.19!MLLT11;;chr6:21597765..21597779,+!p2@SOX4!0.95!65.96!SOX4;;chr8:80680024..80680046,-!p2@HEY1!0.95!9.04!HEY1;;chrX:136648297..136648319,+!p3@ZIC3!0.95!7.88!ZIC3;;chr8:60031809..60031835,-!p4@TOX!0.94!9.85!TOX;;chr5:124082279..124082319,-!p3@ZNF608!0.94!9.39!ZNF608;;chr11:31832581..31832601,-!p7@PAX6!0.94!7.77!PAX6;;chr14:29237009..29237049,+!p4@FOXG1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FP90!0.23!14.38!ZFP90;;chr18:53255415..53255491,-!p1@TCF4!0.23!12.40!TCF4;;chr10:114710098..114710130,+!p2@TCF7L2!0.23!11.01!TCF7L2;;chr11:65479702..65479731,+!p1@KAT5!0.23!9.27!KAT5;;chr8:28243661..28243709,-!p1@ZNF395!0.23!8.23!ZNF395;;chr19:56152437..56152467,+!p3@ZNF580!0.23!7.19!ZNF580;;chr2:60780753..60780800,-!p1@BCL11A!0.23!6.84!BCL11A;;chr17:16557128..16557174,-!p1@ZNF624!0.23!6.26!ZNF624;;chr19:11959532..11959593,+!p1@ZNF439!0.23!5.22!ZNF439;;chr17:41277372..41277418,-!p1@BRCA1!0.23!4.87!BRCA1;;chr12:104531854..104531893,-!p2@NFYB!0.23!4.87!NFYB;;chr19:37960240..37960299,+!p1@ZNF570!0.23!4.75!ZNF570;;chr19:44455368..44455396,+!p1@ZNF221!0.23!4.52!ZNF221;;chr7:150945754..150945789,-!p2@SMARCD3!0.23!3.94!SMARCD3;;chr7:42276822..42276895,-!p2@GLI3!0.23!3.83!GLI3;;chr3:187463220..187463232,-!p3@BCL6!0.23!3.83!BCL6;;chr19:20188776..20188826,+!p1@ZNF90!0.23!3.36!ZNF90;;chr2:42795651..42795676,+!p3@MTA3!0.23!3.25!MTA3;;chr19:53662295..53662319,-!p1@ZNF347!0.23!3.13!ZNF347;;chr3:12329358..12329393,+!p3@PPARG!0.23!3.01!PPARG;;chr9:32550839..32550962,-!p3@TOPORS!0.23!3.01!TOPORS;;chr3:114819124..114819200,-!p3@ZBTB20!0.23!2.78!ZBTB20;;chr4:57774018..57774040,+!p3@REST!0.23!2.78!REST;;chr7:99102592..99102620,+!p3@ZKSCAN5!0.23!2.55!ZKSCAN5;;chr4:38665703..38665713,+!p5@KLF3!0.23!2.20!KLF3;;chr19:9420483..9420530,-!p@chr19:9420483..9420530,-!0.23!2.20!ZNF699;;chr12:57400227..57400245,-!p2@ZBTB39!0.23!2.20!ZBTB39;;chr19:21265028..21265052,+!p2@ZNF714!0.23!1.97!ZNF714;;chr19:17356436..17356481,-!p3@NR2F6!0.23!1.85!NR2F6;;chr18:74072572..74072588,-!p2@ZNF516!0.23!1.62!ZNF516;;chr12:50479101..50479108,+!p3@SMARCD1!0.23!1.62!SMARCD1;;chr14:105886300..105886316,+!p2@MTA1!0.23!1.62!MTA1;;chr3:40547505..40547545,+!p2@ZNF620!0.23!1.62!ZNF620;;chr12:51566592..51566617,-!p3@TFCP2!0.23!1.51!TFCP2;;chr15:57211634..57211657,+!p5@TCF12!0.23!1.51!TCF12;;chr19:53496806..53496848,-!p2@ZNF702P!0.23!1.51!ZNF702P;;chr1:33004996..33005017,+!p3@ZBTB8A!0.23!1.28!ZBTB8A;;chr6:45390343..45390388,+!p10@RUNX2!0.23!1.28!RUNX2;;chr15:96869114..96869160,+!p11@NR2F2!0.23!1.28!NR2F2;;chr1:164528297..164528309,+!p9@PBX1!0.23!1.16!PBX1;;chr12:125003087..125003141,-!p4@NCOR2!0.23!1.16!NCOR2;;chr17:41622834..41622883,-!p6@ETV4!0.23!1.04!ETV4;;chr1:114301755..114301796,-!p3@PHTF1!0.23!0.93!PHTF1;;chr3:170076223..170076242,+!p6@SKIL!0.23!0.93!SKIL;;chr10:44144219..44144230,-!p5@ZNF32!0.23!0.81!ZNF32;;chr11:16629261..16629284,-!p1@SOX6!0.23!0.70!SOX6;;chr11:31832539..31832548,-!p16@PAX6!0.23!0.70!PAX6;;chr12:103352326..103352351,+!p3@ASCL1!0.23!0.70!ASCL1;;chr12:109747023..109747033,-!p3@FOXN4!0.23!0.70!FOXN4;;chr12:24715342..24715354,-!p4@SOX5!0.23!0.70!SOX5;;chr12:96588425..96588432,+!p8@ELK3!0.23!0.70!ELK3;;chr14:69263043..69263069,-!p8@ZFP36L1!0.23!0.70!ZFP36L1;;chr2:100721881..100721904,-!p6@AFF3!0.23!0.70!AFF3;;chr2:145275982..145276003,-!p7@ZEB2!0.23!0.70!ZEB2;;chr2:16080635..16080650,+!p4@MYCN!0.23!0.70!MYCN;;chr2:208030614..208030625,-!p9@KLF7!0.23!0.70!KLF7;;chr2:25475185..25475196,-!p15@DNMT3A!0.23!0.70!DNMT3A;;chr2:85980868..85980880,+!p12@ATOH8!0.23!0.70!ATOH8;;chr3:71355138..71355149,-!p41@FOXP1!0.23!0.70!FOXP1;;chr4:109088940..109089037,-!p4@LEF1!0.23!0.70!LEF1;;chr4:109089901..109089930,-!p3@LEF1!0.23!0.70!LEF1;;chr19:50922187..50922204,+!p1@SPIB!0.23!0.70!SPIB;;chr1:214161600..214161606,+!p7@PROX1!0.23!0.70!PROX1;;chr15:57511589..57511608,+!p4@TCF12!0.23!0.70!TCF12;;chr15:90294087..90294115,-!p1@MESP1!0.23!0.70!MESP1;;chr16:79633867..79633872,-!p16@MAF!0.23!0.70!MAF;;chr16:79634447..79634462,-!p8@MAF!0.23!0.70!MAF;;chr17:41622982..41623001,-!p11@ETV4!0.23!0.70!ETV4;;chr19:12595565..12595576,-!p3@ZNF709!0.23!0.70!ZNF709;;chr19:19976620..19976631,+!p4@ZNF253!0.23!0.70!ZNF253;;chr5:124082548..124082571,-!p9@ZNF608!0.23!0.70!ZNF608;;chr5:92923160..92923166,+!p23@NR2F1!0.23!0.70!NR2F1;;chr6:21597499..21597513,+!p16@SOX4!0.23!0.70!SOX4;;chr6:45390137..45390148,+!p12@RUNX2!0.23!0.70!RUNX2;;chr6:45390399..45390418,+!p15@RUNX2!0.23!0.70!RUNX2;;chr6:99282461..99282472,+!p7@POU3F2!0.23!0.70!POU3F2;;chr7:14026063..14026091,-!p10@ETV1!0.23!0.70!ETV1;;chr8:86089472..86089483,+!p9@E2F5!0.23!0.70!E2F5;;chr9:2159850..2159880,+!p14@SMARCA2!0.23!0.70!SMARCA2;;chr9:126777702..126777716,+!p5@LHX2!0.23!0.70!LHX2;;chrX:84498946..84498955,+!p4@ZNF711!0.23!0.70!ZNF711;;chr9:126777688..126777700,+!p6@LHX2!0.23!0.70!LHX2;;chrX:84498924..84498935,+!p5@ZNF711!0.23!0.70!ZNF711;;chr12:53845879..53845894,+!p1@PCBP2!0.22!1059.95!PCBP2;;chr1:8938709..8938720,-!p3@ENO1!0.22!73.27!ENO1;;chr16:30798492..30798535,-!p1@ZNF629!0.22!23.30!ZNF629;;chr19:17356697..17356762,-!p1@NR2F6!0.22!19.94!NR2F6;;chr19:9731872..9731915,-!p1@ZNF561!0.22!18.78!ZNF561;;chr6:43139153..43139232,+!p1@SRF!0.22!13.80!SRF;;chr14:55493763..55493824,-!p1@WDHD1!0.22!10.55!WDHD1;;chr1:227751231..227751273,+!p1@ZNF678!0.22!8.93!ZNF678;;chr4:146859927..146860055,-!p1@ZNF827!0.22!8.35!ZNF827;;chr19:52643169..52643199,-!p1@ZNF616!0.22!8.12!ZNF616;;chr19:36545128..36545203,-!p1@THAP8!0.22!6.26!THAP8;;chr15:77713025..77713081,+!p2@HMG20A!0.22!5.80!HMG20A;;chr19:38210622..38210681,-!p1@ZNF607!0.22!4.87!ZNF607;;chr19:44598498..44598529,+!p1@ZNF224!0.22!4.06!ZNF224;;chr4:1873155..1873185,+!p3@WHSC1!0.22!3.36!WHSC1;;chr20:306051..306096,+!p3@SOX12!0.22!3.25!SOX12;;chr19:58920102..58920149,+!p2@ZNF584!0.22!3.01!ZNF584;;chr1:33938236..33938267,+!p1@ZSCAN20!0.22!3.01!ZSCAN20;;chr9:14083467..14083483,-!p4@NFIB!0.22!2.90!NFIB;;chr6:45390025..45390076,+!p2@RUNX2!0.22!2.78!RUNX2;;chr19:44037546..44037594,+!p1@ZNF575!0.22!2.32!ZNF575;;chr15:37391271..37391376,-!p5@MEIS2!0.22!1.97!MEIS2;;chr4:206390..206444,+!p1@ZNF876P!0.22!1.85!ZNF876P;;chrX:119384566..119384585,+!p2@ZBTB33!0.22!1.62!ZBTB33;;chr1:27022578..27022589,+!p5@ARID1A!0.22!1.62!ARID1A;;chr5:72744562..72744573,-!p3@FOXD1!0.22!1.04!FOXD1;;chr15:37392094..37392116,-!p6@MEIS2!0.22!1.04!MEIS2;;chr2:176033054..176033065,-!p4@ATF2!0.22!0.93!ATF2;;chr3:169381420..169381535,-!p1@MECOM!0.22!0.93!MECOM;;chr10:8096772..8096787,+!p2@GATA3!0.22!0.93!GATA3;;chr12:96640858..96640878,+!p6@ELK3!0.22!0.93!ELK3;;chr1:6845497..6845561,+!p1@CAMTA1!0.21!53.79!CAMTA1;;chr7:99613212..99613236,+!p1@ZKSCAN1!0.21!51.01!ZKSCAN1;;chr19:56154958..56155027,+!p1@ZNF581!0.21!48.23!ZNF581;;chr19:11071685..11071798,+!p1@SMARCA4!0.21!41.04!SMARCA4;;chr19:36706024..36706049,+!p1@ZNF146!0.21!25.85!ZNF146;;chr1:161015706..161015747,-!p1@USF1!0.21!16.81!USF1;;chr6:32095968..32096032,-!p1@ATF6B!0.21!12.17!ATF6B;;chr21:27107259..27107299,+!p1@GABPA!0.21!8.00!GABPA;;chr15:57025759..57025811,-!p2@ZNF280D!0.21!6.84!ZNF280D;;chr19:53466095..53466149,-!p1@ZNF321P,p1@ZNF816-ZNF321P,p1@ZNF816!0.21!5.45!ZNF816;;chr5:137804484..137804498,+!p2@EGR1!0.21!5.22!EGR1;;chr19:44617538..44617598,+!p1@ZNF225!0.21!4.99!ZNF225;;chr19:19303619..19303651,+!p2@RFXANK!0.21!4.87!RFXANK;;chr17:38256877..38256900,-!p2@NR1D1!0.21!3.94!NR1D1;;chr16:67062996..67063016,+!p3@CBFB!0.21!3.71!CBFB;;chr19:8942962..8942987,-!p1@ZNF558!0.21!3.25!ZNF558;;chr19:56904880..56904919,-!p1@ZNF582!0.21!2.78!ZNF582;;chr18:32957260..32957309,-!p1@ZNF396!0.21!2.43!ZNF396;;chr12:56753939..56753951,-!p2@STAT2!0.21!2.32!STAT2;;chrX:134478026..134478052,-!p2@ZNF75D!0.21!2.32!ZNF75D;;chr1:33721873..33721898,+!p3@ZNF362!0.21!1.97!ZNF362;;chr9:14082760..14082775,-!p6@NFIB!0.21!1.62!NFIB;;chr6:10412600..10412637,-!p1@TFAP2A!0.21!1.62!TFAP2A;;chr18:56530136..56530199,+!p3@ZNF532!0.21!1.39!ZNF532;;chr15:56535722..56535764,-!p3@RFX7!0.21!1.28!RFX7;;chr19:58987786..58987805,+!p3@ZNF446!0.21!1.28!ZNF446;;chr16:68573640..68573660,+!p3@ZFP90!0.21!1.16!ZFP90;;chr6:28973090..28973094,-!p1@ZNF311!0.21!1.04!ZNF311;;chr15:37392593..37392607,-!p13@MEIS2!0.21!0.93!MEIS2;;chr19:36545320..36545335,-!p5@THAP8!0.21!0.93!THAP8;;chr15:85144307..85144329,+!p2@ZSCAN2!0.21!0.81!ZSCAN2;;chr19:20748603..20748606,-!p4@ZNF737!0.21!0.81!ZNF737;;chr19:40503013..40503044,+!p3@ZNF546!0.21!0.81!ZNF546;;chr5:138629417..138629446,+!p1@MATR3!0.20!134.48!MATR3;;chr4:41992513..41992561,+!p1@SLC30A9!0.20!92.05!SLC30A9;;chr22:41697520..41697613,+!p1@ZC3H7B!0.20!81.15!ZC3H7B;;chr6:155635583..155635644,-!p1@TFB1M!0.20!17.85!TFB1M;;chr5:138629389..138629416,+!p4@MATR3!0.20!17.16!MATR3;;chr20:39317868..39317884,-!p1@MAFB!0.20!16.35!MAFB;;chr16:3162557..3162600,+!p1@ZNF205!0.20!11.59!ZNF205;;chr2:145274900..145274934,-!p4@ZEB2!0.20!8.12!ZEB2;;chr1:249132512..249132547,+!p2@ZNF672!0.20!7.88!ZNF672;;chr19:37157713..37157760,-!p1@ZNF461!0.20!7.54!ZNF461;;chr6:108882109..108882173,+!p2@FOXO3!0.20!7.07!FOXO3;;chr17:42298615..42298692,-!p2@UBTF!0.20!6.72!UBTF;;chr2:95831529..95831569,+!p1@ZNF2!0.20!5.91!ZNF2;;
 
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FP90!0.23!14.38!ZFP90;;chr18:53255415..53255491,-!p1@TCF4!0.23!12.40!TCF4;;chr10:114710098..114710130,+!p2@TCF7L2!0.23!11.01!TCF7L2;;chr11:65479702..65479731,+!p1@KAT5!0.23!9.27!KAT5;;chr8:28243661..28243709,-!p1@ZNF395!0.23!8.23!ZNF395;;chr19:56152437..56152467,+!p3@ZNF580!0.23!7.19!ZNF580;;chr2:60780753..60780800,-!p1@BCL11A!0.23!6.84!BCL11A;;chr17:16557128..16557174,-!p1@ZNF624!0.23!6.26!ZNF624;;chr19:11959532..11959593,+!p1@ZNF439!0.23!5.22!ZNF439;;chr17:41277372..41277418,-!p1@BRCA1!0.23!4.87!BRCA1;;chr12:104531854..104531893,-!p2@NFYB!0.23!4.87!NFYB;;chr19:37960240..37960299,+!p1@ZNF570!0.23!4.75!ZNF570;;chr19:44455368..44455396,+!p1@ZNF221!0.23!4.52!ZNF221;;chr7:150945754..150945789,-!p2@SMARCD3!0.23!3.94!SMARCD3;;chr7:42276822..42276895,-!p2@GLI3!0.23!3.83!GLI3;;chr3:187463220..187463232,-!p3@BCL6!0.23!3.83!BCL6;;chr19:20188776..20188826,+!p1@ZNF90!0.23!3.36!ZNF90;;chr2:42795651..42795676,+!p3@MTA3!0.23!3.25!MTA3;;chr19:53662295..53662319,-!p1@ZNF347!0.23!3.13!ZNF347;;chr3:12329358..12329393,+!p3@PPARG!0.23!3.01!PPARG;;chr9:32550839..32550962,-!p3@TOPORS!0.23!3.01!TOPORS;;chr3:114819124..114819200,-!p3@ZBTB20!0.23!2.78!ZBTB20;;chr4:57774018..57774040,+!p3@REST!0.23!2.78!REST;;chr7:99102592..99102620,+!p3@ZKSCAN5!0.23!2.55!ZKSCAN5;;chr4:38665703..38665713,+!p5@KLF3!0.23!2.20!KLF3;;chr19:9420483..9420530,-!p@chr19:9420483..9420530,-!0.23!2.20!ZNF699;;chr12:57400227..57400245,-!p2@ZBTB39!0.23!2.20!ZBTB39;;chr19:21265028..21265052,+!p2@ZNF714!0.23!1.97!ZNF714;;chr19:17356436..17356481,-!p3@NR2F6!0.23!1.85!NR2F6;;chr18:74072572..74072588,-!p2@ZNF516!0.23!1.62!ZNF516;;chr12:50479101..50479108,+!p3@SMARCD1!0.23!1.62!SMARCD1;;chr14:105886300..105886316,+!p2@MTA1!0.23!1.62!MTA1;;chr3:40547505..40547545,+!p2@ZNF620!0.23!1.62!ZNF620;;chr12:51566592..51566617,-!p3@TFCP2!0.23!1.51!TFCP2;;chr15:57211634..57211657,+!p5@TCF12!0.23!1.51!TCF12;;chr19:53496806..53496848,-!p2@ZNF702P!0.23!1.51!ZNF702P;;chr1:33004996..33005017,+!p3@ZBTB8A!0.23!1.28!ZBTB8A;;chr6:45390343..45390388,+!p10@RUNX2!0.23!1.28!RUNX2;;chr15:96869114..96869160,+!p11@NR2F2!0.23!1.28!NR2F2;;chr1:164528297..164528309,+!p9@PBX1!0.23!1.16!PBX1;;chr12:125003087..125003141,-!p4@NCOR2!0.23!1.16!NCOR2;;chr17:41622834..41622883,-!p6@ETV4!0.23!1.04!ETV4;;chr1:114301755..114301796,-!p3@PHTF1!0.23!0.93!PHTF1;;chr3:170076223..170076242,+!p6@SKIL!0.23!0.93!SKIL;;chr10:44144219..44144230,-!p5@ZNF32!0.23!0.81!ZNF32;;chr11:16629261..16629284,-!p1@SOX6!0.23!0.70!SOX6;;chr11:31832539..31832548,-!p16@PAX6!0.23!0.70!PAX6;;chr12:103352326..103352351,+!p3@ASCL1!0.23!0.70!ASCL1;;chr12:109747023..109747033,-!p3@FOXN4!0.23!0.70!FOXN4;;chr12:24715342..24715354,-!p4@SOX5!0.23!0.70!SOX5;;chr12:96588425..96588432,+!p8@ELK3!0.23!0.70!ELK3;;chr14:69263043..69263069,-!p8@ZFP36L1!0.23!0.70!ZFP36L1;;chr2:100721881..100721904,-!p6@AFF3!0.23!0.70!AFF3;;chr2:145275982..145276003,-!p7@ZEB2!0.23!0.70!ZEB2;;chr2:16080635..16080650,+!p4@MYCN!0.23!0.70!MYCN;;chr2:208030614..208030625,-!p9@KLF7!0.23!0.70!KLF7;;chr2:25475185..25475196,-!p15@DNMT3A!0.23!0.70!DNMT3A;;chr2:85980868..85980880,+!p12@ATOH8!0.23!0.70!ATOH8;;chr3:71355138..71355149,-!p41@FOXP1!0.23!0.70!FOXP1;;chr4:109088940..109089037,-!p4@LEF1!0.23!0.70!LEF1;;chr4:109089901..109089930,-!p3@LEF1!0.23!0.70!LEF1;;chr19:50922187..50922204,+!p1@SPIB!0.23!0.70!SPIB;;chr1:214161600..214161606,+!p7@PROX1!0.23!0.70!PROX1;;chr15:57511589..57511608,+!p4@TCF12!0.23!0.70!TCF12;;chr15:90294087..90294115,-!p1@MESP1!0.23!0.70!MESP1;;chr16:79633867..79633872,-!p16@MAF!0.23!0.70!MAF;;chr16:79634447..79634462,-!p8@MAF!0.23!0.70!MAF;;chr17:41622982..41623001,-!p11@ETV4!0.23!0.70!ETV4;;chr19:12595565..12595576,-!p3@ZNF709!0.23!0.70!ZNF709;;chr19:19976620..19976631,+!p4@ZNF253!0.23!0.70!ZNF253;;chr5:124082548..124082571,-!p9@ZNF608!0.23!0.70!ZNF608;;chr5:92923160..92923166,+!p23@NR2F1!0.23!0.70!NR2F1;;chr6:21597499..21597513,+!p16@SOX4!0.23!0.70!SOX4;;chr6:45390137..45390148,+!p12@RUNX2!0.23!0.70!RUNX2;;chr6:45390399..45390418,+!p15@RUNX2!0.23!0.70!RUNX2;;chr6:99282461..99282472,+!p7@POU3F2!0.23!0.70!POU3F2;;chr7:14026063..14026091,-!p10@ETV1!0.23!0.70!ETV1;;chr8:86089472..86089483,+!p9@E2F5!0.23!0.70!E2F5;;chr9:2159850..2159880,+!p14@SMARCA2!0.23!0.70!SMARCA2;;chr9:126777702..126777716,+!p5@LHX2!0.23!0.70!LHX2;;chrX:84498946..84498955,+!p4@ZNF711!0.23!0.70!ZNF711;;chr9:126777688..126777700,+!p6@LHX2!0.23!0.70!LHX2;;chrX:84498924..84498935,+!p5@ZNF711!0.23!0.70!ZNF711;;chr12:53845879..53845894,+!p1@PCBP2!0.22!1059.95!PCBP2;;chr1:8938709..8938720,-!p3@ENO1!0.22!73.27!ENO1;;chr16:30798492..30798535,-!p1@ZNF629!0.22!23.30!ZNF629;;chr19:17356697..17356762,-!p1@NR2F6!0.22!19.94!NR2F6;;chr19:9731872..9731915,-!p1@ZNF561!0.22!18.78!ZNF561;;chr6:43139153..43139232,+!p1@SRF!0.22!13.80!SRF;;chr14:55493763..55493824,-!p1@WDHD1!0.22!10.55!WDHD1;;chr1:227751231..227751273,+!p1@ZNF678!0.22!8.93!ZNF678;;chr4:146859927..146860055,-!p1@ZNF827!0.22!8.35!ZNF827;;chr19:52643169..52643199,-!p1@ZNF616!0.22!8.12!ZNF616;;chr19:36545128..36545203,-!p1@THAP8!0.22!6.26!THAP8;;chr15:77713025..77713081,+!p2@HMG20A!0.22!5.80!HMG20A;;chr19:38210622..38210681,-!p1@ZNF607!0.22!4.87!ZNF607;;chr19:44598498..44598529,+!p1@ZNF224!0.22!4.06!ZNF224;;chr4:1873155..1873185,+!p3@WHSC1!0.22!3.36!WHSC1;;chr20:306051..306096,+!p3@SOX12!0.22!3.25!SOX12;;chr19:58920102..58920149,+!p2@ZNF584!0.22!3.01!ZNF584;;chr1:33938236..33938267,+!p1@ZSCAN20!0.22!3.01!ZSCAN20;;chr9:14083467..14083483,-!p4@NFIB!0.22!2.90!NFIB;;chr6:45390025..45390076,+!p2@RUNX2!0.22!2.78!RUNX2;;chr19:44037546..44037594,+!p1@ZNF575!0.22!2.32!ZNF575;;chr15:37391271..37391376,-!p5@MEIS2!0.22!1.97!MEIS2;;chr4:206390..206444,+!p1@ZNF876P!0.22!1.85!ZNF876P;;chrX:119384566..119384585,+!p2@ZBTB33!0.22!1.62!ZBTB33;;chr1:27022578..27022589,+!p5@ARID1A!0.22!1.62!ARID1A;;chr5:72744562..72744573,-!p3@FOXD1!0.22!1.04!FOXD1;;chr15:37392094..37392116,-!p6@MEIS2!0.22!1.04!MEIS2;;chr2:176033054..176033065,-!p4@ATF2!0.22!0.93!ATF2;;chr3:169381420..169381535,-!p1@MECOM!0.22!0.93!MECOM;;chr10:8096772..8096787,+!p2@GATA3!0.22!0.93!GATA3;;chr12:96640858..96640878,+!p6@ELK3!0.22!0.93!ELK3;;chr1:6845497..6845561,+!p1@CAMTA1!0.21!53.79!CAMTA1;;chr7:99613212..99613236,+!p1@ZKSCAN1!0.21!51.01!ZKSCAN1;;chr19:56154958..56155027,+!p1@ZNF581!0.21!48.23!ZNF581;;chr19:11071685..11071798,+!p1@SMARCA4!0.21!41.04!SMARCA4;;chr19:36706024..36706049,+!p1@ZNF146!0.21!25.85!ZNF146;;chr1:161015706..161015747,-!p1@USF1!0.21!16.81!USF1;;chr6:32095968..32096032,-!p1@ATF6B!0.21!12.17!ATF6B;;chr21:27107259..27107299,+!p1@GABPA!0.21!8.00!GABPA;;chr15:57025759..57025811,-!p2@ZNF280D!0.21!6.84!ZNF280D;;chr19:53466095..53466149,-!p1@ZNF321P,p1@ZNF816-ZNF321P,p1@ZNF816!0.21!5.45!ZNF816;;chr5:137804484..137804498,+!p2@EGR1!0.21!5.22!EGR1;;chr19:44617538..44617598,+!p1@ZNF225!0.21!4.99!ZNF225;;chr19:19303619..19303651,+!p2@RFXANK!0.21!4.87!RFXANK;;chr17:38256877..38256900,-!p2@NR1D1!0.21!3.94!NR1D1;;chr16:67062996..67063016,+!p3@CBFB!0.21!3.71!CBFB;;chr19:8942962..8942987,-!p1@ZNF558!0.21!3.25!ZNF558;;chr19:56904880..56904919,-!p1@ZNF582!0.21!2.78!ZNF582;;chr18:32957260..32957309,-!p1@ZNF396!0.21!2.43!ZNF396;;chr12:56753939..56753951,-!p2@STAT2!0.21!2.32!STAT2;;chrX:134478026..134478052,-!p2@ZNF75D!0.21!2.32!ZNF75D;;chr1:33721873..33721898,+!p3@ZNF362!0.21!1.97!ZNF362;;chr9:14082760..14082775,-!p6@NFIB!0.21!1.62!NFIB;;chr6:10412600..10412637,-!p1@TFAP2A!0.21!1.62!TFAP2A;;chr18:56530136..56530199,+!p3@ZNF532!0.21!1.39!ZNF532;;chr15:56535722..56535764,-!p3@RFX7!0.21!1.28!RFX7;;chr19:58987786..58987805,+!p3@ZNF446!0.21!1.28!ZNF446;;chr16:68573640..68573660,+!p3@ZFP90!0.21!1.16!ZFP90;;chr6:28973090..28973094,-!p1@ZNF311!0.21!1.04!ZNF311;;chr15:37392593..37392607,-!p13@MEIS2!0.21!0.93!MEIS2;;chr19:36545320..36545335,-!p5@THAP8!0.21!0.93!THAP8;;chr15:85144307..85144329,+!p2@ZSCAN2!0.21!0.81!ZSCAN2;;chr19:20748603..20748606,-!p4@ZNF737!0.21!0.81!ZNF737;;chr19:40503013..40503044,+!p3@ZNF546!0.21!0.81!ZNF546;;chr5:138629417..138629446,+!p1@MATR3!0.20!134.48!MATR3;;chr4:41992513..41992561,+!p1@SLC30A9!0.20!92.05!SLC30A9;;chr22:41697520..41697613,+!p1@ZC3H7B!0.20!81.15!ZC3H7B;;chr6:155635583..155635644,-!p1@TFB1M!0.20!17.85!TFB1M;;chr5:138629389..138629416,+!p4@MATR3!0.20!17.16!MATR3;;chr20:39317868..39317884,-!p1@MAFB!0.20!16.35!MAFB;;chr16:3162557..3162600,+!p1@ZNF205!0.20!11.59!ZNF205;;chr2:145274900..145274934,-!p4@ZEB2!0.20!8.12!ZEB2;;chr1:249132512..249132547,+!p2@ZNF672!0.20!7.88!ZNF672;;chr19:37157713..37157760,-!p1@ZNF461!0.20!7.54!ZNF461;;chr6:108882109..108882173,+!p2@FOXO3!0.20!7.07!FOXO3;;chr17:42298615..42298692,-!p2@UBTF!0.20!6.72!UBTF;;chr2:95831529..95831569,+!p1@ZNF2!0.20!5.91!ZNF2;;
 +
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002224;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000970;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001801
 
|fonse_cell_line=
 
|fonse_cell_line=
 
|fonse_cell_line_closure=
 
|fonse_cell_line_closure=
Line 40: Line 41:
 
|fonse_treatment_closure=
 
|fonse_treatment_closure=
 
|has_quality=
 
|has_quality=
 +
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Lens%2520Epithelial%2520Cells%252c%2520donor2.CNhs12568.11609-120I7.hg19.nobarcode.bam
 +
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Lens%2520Epithelial%2520Cells%252c%2520donor2.CNhs12568.11609-120I7.hg19.ctss.bed.gz
 +
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Lens%2520Epithelial%2520Cells%252c%2520donor2.CNhs12568.11609-120I7.hg19.nobarcode.rdna.fa.gz
 +
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Lens%2520Epithelial%2520Cells%252c%2520donor2.CNhs12568.11609-120I7.hg38.nobarcode.bam
 +
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Lens%2520Epithelial%2520Cells%252c%2520donor2.CNhs12568.11609-120I7.hg38.nobarcode.ctss.bed.gz
 
|id=FF:11609-120I7
 
|id=FF:11609-120I7
 
|is_a=EFO:0002091;;FF:0000085
 
|is_a=EFO:0002091;;FF:0000085
 
|is_obsolete=
 
|is_obsolete=
 
|library_id=CNhs12568
 
|library_id=CNhs12568
|library_id_phase_based=1:CNhs12568
+
|library_id_phase_based=2:CNhs12568
 +
|microRNAs=
 +
|microRNAs_nn=
 +
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11609
 +
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11609
 
|name=Lens Epithelial Cells, donor2
 
|name=Lens Epithelial Cells, donor2
 
|namespace=FANTOM5
 
|namespace=FANTOM5
Line 50: Line 60:
 
|profile_cagescan=,,,
 
|profile_cagescan=,,,
 
|profile_hcage=CNhs12568,LSID917,release011,COMPLETED
 
|profile_hcage=CNhs12568,LSID917,release011,COMPLETED
|profile_rnaseq=,,,
+
|profile_rnaseq=
 
|profile_srnaseq=,,,
 
|profile_srnaseq=,,,
 +
|refex=http://refex.dbcls.jp/genelist.php?lang
 
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Line 89: Line 100:
 
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|top_motifs=NANOG:2.85379555922;PAX1,9:2.69123322933;SOX2:2.42607685551;T:2.21164932884;RBPJ:1.98299030759;NKX2-1,4:1.86608885439;GFI1:1.76234102644;ZIC1..3:1.75114056344;OCT4_SOX2{dimer}:1.63681701236;LHX3,4:1.5390403069;SOX{8,9,10}:1.48925696968;SOX17:1.45319473946;SP1:1.42537245533;VSX1,2:1.37526683105;NFY{A,B,C}:1.32036375753;GTF2A1,2:1.28414176308;PBX1:1.26928381328;FOXM1:1.24820076219;PATZ1:1.24041229649;ALX1:1.22951991181;TFDP1:1.22337065542;PAX5:1.22044082635;MZF1:1.19984268064;POU5F1:1.19766270917;MAZ:1.09659522;EBF1:1.08160720978;ZFP161:1.0739074322;PRRX1,2:1.0623779868;NKX2-3_NKX2-5:1.05683105506;HOX{A6,A7,B6,B7}:1.04640027335;MTE{core}:1.03040005565;LEF1_TCF7_TCF7L1,2:1.02841346592;ONECUT1,2:1.0261508476;HOX{A4,D4}:0.994024298258;GFI1B:0.979369352607;RREB1:0.97103180807;RORA:0.958334006181;ADNP_IRX_SIX_ZHX:0.929783943466;NHLH1,2:0.914019350568;STAT1,3:0.909053422209;CDX1,2,4:0.896447973127;NKX6-1,2:0.890677141452;GTF2I:0.880013770336;RFX1:0.853306208;CUX2:0.785246550716;LMO2:0.745366901872;TLX1..3_NFIC{dimer}:0.73780963632;DBP:0.698854574735;CRX:0.692874417409;XCPE1{core}:0.690552124828;RFX2..5_RFXANK_RFXAP:0.606704315497;ZBTB6:0.603073147472;POU1F1:0.594108780458;EVI1:0.58623985621;EGR1..3:0.584880484443;HIC1:0.577309865676;NRF1:0.556785093254;ZNF384:0.553085044443;CDC5L:0.550053154031;ZNF143:0.472502825056;JUN:0.47224625028;TFAP2B:0.453634069304;EP300:0.431632516153;TFAP4:0.413514763997;AHR_ARNT_ARNT2:0.413482980231;MED-1{core}:0.385077789771;MYFfamily:0.382849228825;PAX6:0.38075512186;E2F1..5:0.373049101504;PRDM1:0.367953144976;REST:0.333191363542;HAND1,2:0.292806348401;MYOD1:0.270790988869;GATA4:0.264744645327;SREBF1,2:0.250710355423;TGIF1:0.240871052092;NR3C1:0.234682531581;HNF4A_NR2F1,2:0.206299141057;KLF4:0.201459402801;SMAD1..7,9:0.169278822457;TEAD1:0.168130524084;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.164790030922;PAX8:0.152606746662;NFE2:0.135315180787;NKX3-1:0.121510390276;PAX4:0.108433879197;TBP:0.104550260824;HOX{A5,B5}:0.103289393816;BPTF:0.0944549284775;TFCP2:0.0919179626891;YY1:0.0672646057492;ESRRA:0.0634652297419;FOXP1:0.0567675590263;ZEB1:0.0509786746587;FOXP3:0.040913209617;TAL1_TCF{3,4,12}:0.0277766467251;FOSL2:0.0197647015863;POU3F1..4:0.0031443104297;SOX5:-0.0207010013873;TFAP2{A,C}:-0.0254888846564;RXR{A,B,G}:-0.0294278841389;NFATC1..3:-0.0308515536536;HNF1A:-0.0408607381042;MYBL2:-0.0624116675226;BREu{core}:-0.0695820969786;ELK1,4_GABP{A,B1}:-0.07898932633;NR1H4:-0.0917697439702;HSF1,2:-0.0990700812571;GCM1,2:-0.105768047877;IKZF1:-0.114541942508;HMX1:-0.11498679717;SRF:-0.132490750007;ATF2:-0.134520261736;RUNX1..3:-0.166750020354;TP53:-0.167223105345;MYB:-0.168071710301;MEF2{A,B,C,D}:-0.181177182426;HIF1A:-0.198802928052;FOXQ1:-0.212024996961;FOX{I1,J2}:-0.212309327209;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.216127014572;POU2F1..3:-0.222966982376;FOS_FOS{B,L1}_JUN{B,D}:-0.22354404941;BACH2:-0.230905559238;POU6F1:-0.238753864561;SNAI1..3:-0.24614171694;NFIL3:-0.250360427406;ZNF148:-0.250938639974;IKZF2:-0.251735582486;NKX3-2:-0.258432454985;FOXL1:-0.262274733208;ZNF423:-0.262329877031;EN1,2:-0.262861054983;MTF1:-0.302431658961;ZBTB16:-0.319807012335;NR6A1:-0.322071996613;NFKB1_REL_RELA:-0.333113671878;GZF1:-0.336572948695;PDX1:-0.339269870059;UFEwm:-0.342430332332;NR5A1,2:-0.35136356496;NFE2L2:-0.355683476763;STAT5{A,B}:-0.370734622365;NFIX:-0.38087832894;STAT2,4,6:-0.390788722458;FOXN1:-0.397804877038;DMAP1_NCOR{1,2}_SMARC:-0.429914459402;TBX4,5:-0.457050472849;FOXA2:-0.459968967516;PITX1..3:-0.470542258948;IRF1,2:-0.475110331371;GATA6:-0.475773124121;CREB1:-0.506621923487;ATF4:-0.519407427714;IRF7:-0.528538703594;FOXD3:-0.533346525993;GLI1..3:-0.534776490717;TEF:-0.558447421201;XBP1:-0.559236923142;TOPORS:-0.56421218307;ALX4:-0.568243427151;MAFB:-0.576249731904;PAX2:-0.577431119093;CEBPA,B_DDIT3:-0.592951009306;FOX{D1,D2}:-0.606184688103;ARID5B:-0.611354322632;FOXO1,3,4:-0.627206466934;NKX2-2,8:-0.646413024531;SPIB:-0.655653863385;HMGA1,2:-0.666918096143;SPI1:-0.702139523604;AIRE:-0.730718873265;ZNF238:-0.758785528039;HLF:-0.763213233193;ELF1,2,4:-0.767558991038;ESR1:-0.781434172162;FOX{F1,F2,J1}:-0.786605517644;SPZ1:-0.795264397187;HOXA9_MEIS1:-0.798335533871;bHLH_family:-0.853969157008;RXRA_VDR{dimer}:-0.875146778547;ETS1,2:-0.903832894701;NANOG{mouse}:-0.906175283087;PPARG:-0.908548841655;ATF5_CREB3:-0.910294846571;HBP1_HMGB_SSRP1_UBTF:-0.920045315724;ATF6:-0.977585309886;NFE2L1:-1.01067764438;PAX3,7:-1.13824122954;TLX2:-1.1416498694;AR:-1.42860854997;HES1:-1.75643856365
 
|xref=
 
|xref=
 +
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11609-120I7;search_select_hide=table117:FF:11609-120I7
 
}}
 
}}

Latest revision as of 09:11, 4 June 2020

Name:Lens Epithelial Cells, donor2
Species:Human (Homo sapiens)
Library ID:CNhs12568
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueeye
dev stageNA
sexNA
ageNA
cell typelens epithelial cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1357
catalog numberSC6555
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005741
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12568 CAGE DRX008320 DRR009192
Accession ID Hg19

Library idBAMCTSS
CNhs12568 DRZ000617 DRZ002002
Accession ID Hg38

Library idBAMCTSS
CNhs12568 DRZ011967 DRZ013352
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis--0.107
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.207
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0476
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19--0.08
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle--0.173
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0476
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed--0.168
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0.0476
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte--0.17
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.112
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory--0.0149
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.642
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.0476
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.555
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.0476
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.123
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.165
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0476
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0476
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.0476
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.0476
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs12568

Jaspar motif P-value
MA0002.2 7.59982e-4
MA0003.1 0.0788
MA0004.1 0.269
MA0006.1 0.867
MA0007.1 0.158
MA0009.1 0.658
MA0014.1 0.874
MA0017.1 0.0254
MA0018.2 0.833
MA0019.1 0.522
MA0024.1 0.0133
MA0025.1 0.704
MA0027.1 0.453
MA0028.1 0.563
MA0029.1 0.17
MA0030.1 0.306
MA0031.1 0.0649
MA0035.2 0.501
MA0038.1 4.94677e-5
MA0039.2 0.725
MA0040.1 0.513
MA0041.1 0.288
MA0042.1 0.663
MA0043.1 0.279
MA0046.1 0.596
MA0047.2 0.00274
MA0048.1 0.687
MA0050.1 7.75419e-5
MA0051.1 0.0527
MA0052.1 0.0704
MA0055.1 0.478
MA0057.1 0.547
MA0058.1 0.287
MA0059.1 0.045
MA0060.1 1.31937e-13
MA0061.1 0.0132
MA0062.2 0.0195
MA0065.2 0.00731
MA0066.1 0.187
MA0067.1 0.277
MA0068.1 0.0883
MA0069.1 0.727
MA0070.1 0.00685
MA0071.1 0.212
MA0072.1 0.301
MA0073.1 0.67
MA0074.1 0.399
MA0076.1 0.589
MA0077.1 0.0122
MA0078.1 0.212
MA0079.2 0.563
MA0080.2 4.13381e-12
MA0081.1 0.0958
MA0083.1 0.807
MA0084.1 0.442
MA0087.1 0.877
MA0088.1 0.0531
MA0090.1 0.611
MA0091.1 0.106
MA0092.1 0.309
MA0093.1 0.328
MA0099.2 0.00654
MA0100.1 0.601
MA0101.1 0.144
MA0102.2 0.102
MA0103.1 0.155
MA0104.2 0.0723
MA0105.1 3.26908e-5
MA0106.1 0.0855
MA0107.1 0.0862
MA0108.2 3.17497e-6
MA0111.1 0.722
MA0112.2 2.85703e-5
MA0113.1 0.0513
MA0114.1 0.243
MA0115.1 0.548
MA0116.1 8.30218e-5
MA0117.1 0.578
MA0119.1 0.132
MA0122.1 0.342
MA0124.1 0.408
MA0125.1 0.00418
MA0131.1 0.75
MA0135.1 0.00123
MA0136.1 1.69793e-12
MA0137.2 0.886
MA0138.2 0.987
MA0139.1 0.473
MA0140.1 0.292
MA0141.1 0.0397
MA0142.1 0.00263
MA0143.1 0.0125
MA0144.1 0.203
MA0145.1 0.687
MA0146.1 0.0705
MA0147.1 0.0242
MA0148.1 0.00692
MA0149.1 0.00645
MA0150.1 8.80398e-4
MA0152.1 0.332
MA0153.1 0.429
MA0154.1 0.0042
MA0155.1 0.914
MA0156.1 1.44576e-7
MA0157.1 0.0396
MA0159.1 0.048
MA0160.1 0.0606
MA0162.1 0.493
MA0163.1 2.04598e-9
MA0164.1 0.512
MA0258.1 0.00545
MA0259.1 0.46



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs12568

Novel motif P-value
1 0.0252
10 0.0111
100 0.893
101 0.524
102 0.964
103 0.152
104 0.662
105 0.47
106 0.0365
107 0.978
108 0.337
109 0.0307
11 0.0296
110 0.249
111 0.0207
112 0.0523
113 0.715
114 0.0102
115 0.0845
116 0.577
117 0.0152
118 0.178
119 0.242
12 0.67
120 0.292
121 0.711
122 0.739
123 0.0359
124 0.694
125 0.964
126 0.324
127 0.616
128 0.293
129 0.261
13 0.161
130 0.0681
131 0.478
132 0.938
133 0.863
134 0.808
135 0.401
136 0.571
137 0.0843
138 0.235
139 0.0025
14 0.84
140 0.442
141 0.216
142 0.0988
143 0.0321
144 0.731
145 0.788
146 0.876
147 0.864
148 0.00687
149 0.111
15 0.0719
150 0.392
151 0.311
152 0.12
153 0.419
154 0.604
155 0.0253
156 0.25
157 0.622
158 0.334
159 0.446
16 0.0999
160 0.203
161 0.452
162 0.232
163 0.867
164 0.00292
165 0.586
166 0.294
167 0.217
168 0.496
169 0.00389
17 0.0746
18 0.0764
19 0.307
2 0.696
20 0.664
21 0.293
22 0.362
23 0.21
24 0.59
25 0.348
26 0.0802
27 0.537
28 0.825
29 0.0283
3 0.0343
30 0.397
31 0.892
32 0.077
33 0.275
34 0.836
35 0.279
36 0.106
37 0.0729
38 0.163
39 0.744
4 0.755
40 0.49
41 0.293
42 0.232
43 0.135
44 0.151
45 0.936
46 0.0641
47 0.051
48 0.104
49 0.106
5 0.193
50 0.889
51 0.471
52 0.751
53 0.606
54 0.393
55 0.0741
56 0.616
57 0.366
58 0.0992
59 0.0978
6 0.51
60 0.0724
61 0.119
62 0.0445
63 0.162
64 0.287
65 0.107
66 0.714
67 0.682
68 0.463
69 0.37
7 0.243
70 0.00826
71 0.0142
72 0.398
73 0.0402
74 0.204
75 0.00993
76 0.142
77 0.234
78 0.149
79 0.159
8 0.147
80 0.7
81 0.221
82 0.0512
83 0.636
84 0.627
85 0.0929
86 0.0712
87 0.128
88 0.765
89 0.347
9 0.455
90 0.486
91 0.602
92 0.12
93 0.0541
94 0.0624
95 0.0259
96 0.541
97 0.717
98 0.229
99 0.871



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs12568


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000255 (eukaryotic cell)
0000306 (crystallin accumulating cell)
0002222 (vertebrate lens cell)
0002224 (lens epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000970 (eye)
0000019 (camera-type eye)
0000483 (epithelium)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0010077 (cuboidal epithelium)
0005389 (transparent eye structure)
0000020 (sense organ)
0010371 (ecto-epithelium)
0007625 (pigment epithelium of eye)
0000484 (simple cuboidal epithelium)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0000965 (lens of camera-type eye)
0001803 (epithelium of lens)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002104 (visual system)
0001801 (anterior segment of eyeball)
0004456 (entire sense organ system)
0001456 (face)
0010230 (eyeball of camera-type eye)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000085 (human lens epithelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

NA