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Difference between revisions of "FF:11616-122A5"

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{{f5samples
 
{{f5samples
 
|DRA_sample_Accession=CAGE@SAMD00005989
 
|DRA_sample_Accession=CAGE@SAMD00005989
|accession_numbers=CAGE;DRX008352;DRR009224;DRZ000649;DRZ002034
+
|accession_numbers=CAGE;DRX008352;DRR009224;DRZ000649;DRZ002034;DRZ011999;DRZ013384
 
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405
 
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405
 
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002092,CL:0002540
 
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002092,CL:0002540
Line 13: Line 13:
 
|def=
 
|def=
 
|expression_enrichment_score=chr7:19157248..19157268,-!p1@TWIST1!1.90!209.94!TWIST1;;chr12:66218255..66218304,+!p3@HMGA2!1.80!161.71!HMGA2;;chr6:34204921..34204939,+!p3@HMGA1!1.71!1421.33!HMGA1;;chr14:61116183..61116208,-!p1@SIX1!1.62!148.94!SIX1;;chr12:66218598..66218645,+!p2@HMGA2!1.56!156.03!HMGA2;;chr5:2751762..2751784,-!p1@IRX2!1.54!34.04!IRX2;;chr16:86600426..86600441,+!p1@FOXC2!1.51!75.18!FOXC2;;chr2:5832508..5832524,+!p1@SOX11!1.45!26.95!SOX11;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.45!26.95!HOXC5;;chr17:46675420..46675465,-!p3@HOXB6!1.37!25.53!HOXB6;;chr11:65686802..65686818,+!p6@DRAP1!1.33!35.46!DRAP1;;chr12:66218212..66218244,+!p5@HMGA2!1.27!25.53!HMGA2;;chr17:46675558..46675577,-!p2@HOXB6!1.26!17.02!HOXB6;;chr9:132427883..132427951,+!p2@PRRX2!1.26!17.02!PRRX2;;chr12:66218836..66218888,+!p1@HMGA2!1.25!153.20!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!1.22!15.60!HMGA2;;chr17:46682321..46682362,-!p1@HOXB6!1.22!15.60!HOXB6;;chr11:65687222..65687240,+!p7@DRAP1!1.19!18.44!DRAP1;;chr12:54394309..54394336,+!p2@HOXC9!1.18!14.18!HOXC9;;chr12:54402745..54402788,+!p1@HOXC8!1.14!12.77!HOXC8;;chr12:66218469..66218477,+!p16@HMGA2!1.14!12.77!HMGA2;;chr17:59477403..59477414,+!p4@TBX2!1.14!12.77!TBX2;;chr11:46299539..46299620,+!p2@CREB3L1!1.13!21.28!CREB3L1;;chr11:65686732..65686756,+!p2@DRAP1!1.12!51.07!DRAP1;;chr9:132427972..132428056,+!p1@PRRX2!1.11!15.60!PRRX2;;chr5:2751785..2751808,-!p2@IRX2!1.09!11.35!IRX2;;chr6:134210243..134210257,+!p1@TCF21!1.09!11.35!TCF21;;chr12:66218183..66218209,+!p4@HMGA2!1.08!21.28!HMGA2;;chr2:200322654..200322707,-!p2@SATB2!1.07!15.60!SATB2;;chr11:46299199..46299233,+!p1@CREB3L1!1.06!55.32!CREB3L1;;chr7:19157043..19157088,-!p2@TWIST1!1.04!25.53!TWIST1;;chr5:3595977..3595999,+!p1@IRX1!1.04!9.93!IRX1;;chr12:54422217..54422239,+!p3@HOXC6!1.04!9.93!HOXC6;;chr12:54447637..54447659,+!p4@HOXC4!1.04!9.93!HOXC4;;chr2:85981107..85981120,+!p3@ATOH8!1.04!9.93!ATOH8;;chr16:86600458..86600461,+!p3@FOXC2!1.04!9.93!FOXC2;;chr17:46690839..46690884,-!p1@HOXB8!1.04!9.93!HOXB8;;chr5:176738887..176738934,-!p1@MXD3!1.03!65.25!MXD3;;chr6:34204672..34204692,+!p1@HMGA1!1.02!1083.73!HMGA1;;chr12:66218573..66218596,+!p7@HMGA2!1.02!14.18!HMGA2;;chr2:19558373..19558392,-!p1@OSR1!1.01!25.53!OSR1;;chr17:46687959..46688007,-!p2@HOXB7!1.01!12.77!HOXB7;;chr1:170633262..170633285,+!p3@PRRX1!0.98!9.93!PRRX1;;chr2:176994408..176994492,+!p1@HOXD8!0.98!8.51!HOXD8;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.98!8.51!HOXC5;;chr1:170633348..170633399,+!p2@PRRX1!0.97!11.35!PRRX1;;chr12:66218378..66218401,+!p6@HMGA2!0.96!12.77!HMGA2;;chr12:2986206..2986258,-!p2@FOXM1!0.95!49.65!FOXM1;;chr17:59477233..59477263,+!p1@TBX2!0.95!25.53!TBX2;;chr19:38720294..38720348,-!p1@DPF1!0.95!9.93!DPF1;;chr12:66218443..66218461,+!p8@HMGA2!0.94!9.93!HMGA2;;chr20:30193083..30193098,+!p1@ID1!0.92!612.79!ID1;;chr16:54320646..54320672,-!p2@IRX3!0.92!11.35!IRX3;;chr6:45296048..45296082,+!p1@RUNX2!0.92!8.51!RUNX2;;chr5:72744594..72744609,-!p1@FOXD1!0.91!34.04!FOXD1;;chr8:145669791..145669834,-!p1@TONSL!0.91!21.28!TONSL;;chr11:65687243..65687276,+!p8@DRAP1!0.91!9.93!DRAP1;;chr12:115122318..115122331,-!p2@TBX3!0.91!7.09!TBX3;;chr12:54410948..54410992,+!p3@HOXC5!0.91!7.09!HOXC5;;chr12:66218420..66218439,+!p12@HMGA2!0.91!7.09!HMGA2;;chr12:66218923..66218934,+!p14@HMGA2!0.91!7.09!HMGA2;;chr16:54320127..54320148,-!p6@IRX3!0.91!7.09!IRX3;;chr17:46675586..46675600,-!p6@HOXB6!0.91!7.09!HOXB6;;chr17:46691732..46691766,-!p4@HOXB8!0.91!7.09!HOXB8;;chr19:47523058..47523114,+!p1@NPAS1!0.91!7.09!NPAS1;;chr1:2461692..2461710,-!p1@HES5!0.91!7.09!HES5;;chr5:3595961..3595975,+!p3@IRX1!0.91!7.09!IRX1;;chr12:54447599..54447630,+!p3@HOXC4!0.90!8.51!HOXC4;;chr2:85980951..85981004,+!p1@ATOH8!0.89!11.35!ATOH8;;chr16:54320617..54320643,-!p3@IRX3!0.88!8.51!IRX3;;chr17:41622765..41622821,-!p2@ETV4!0.87!9.93!ETV4;;chr1:8926441..8926473,-!p10@ENO1!0.87!9.93!ENO1;;chr8:49833948..49833973,-!p2@SNAI2!0.86!42.55!SNAI2;;chr1:170632285..170632309,+!p1@PRRX1!0.86!7.09!PRRX1;;chr14:61116168..61116180,-!p2@SIX1!0.85!7.09!SIX1;;chr16:54320101..54320125,-!p4@IRX3!0.83!8.51!IRX3;;chr20:48599506..48599526,+!p1@SNAI1!0.82!38.30!SNAI1;;chr11:65687158..65687216,+!p4@DRAP1!0.82!34.04!DRAP1;;chr2:239756739..239756755,+!p2@TWIST2!0.82!9.93!TWIST2;;chr22:19748231..19748317,+!p1@TBX1!0.82!5.67!TBX1;;chr4:299227..299272,-!p1@ZNF732!0.82!5.67!ZNF732;;chr11:46316699..46316719,+!p10@CREB3L1!0.82!5.67!CREB3L1;;chr5:3595934..3595957,+!p2@IRX1!0.82!5.67!IRX1;;chr7:27183291..27183324,-!p1@HOXA5!0.82!5.67!HOXA5;;chr17:8027418..8027432,-!p1@HES7!0.82!5.67!HES7;;chr1:23885981..23886002,-!p1@ID3!0.80!1004.29!ID3;;chr11:65667846..65667868,-!p1@FOSL1!0.79!150.36!FOSL1;;chr11:65687362..65687436,+!p3@DRAP1!0.79!25.53!DRAP1;;chr20:42295745..42295765,+!p1@MYBL2!0.77!87.95!MYBL2;;chr6:34204973..34204990,+!p4@HMGA1!0.77!72.34!HMGA1;;chr15:83953397..83953425,-!p1@BNC1!0.77!5.67!BNC1;;chr11:65667884..65667895,-!p2@FOSL1!0.76!19.86!FOSL1;;chr16:54320158..54320200,-!p5@IRX3!0.76!7.09!IRX3;;chr16:54964740..54964789,+!p1@IRX5!0.76!7.09!IRX5;;chr20:32274179..32274213,-!p1@E2F1!0.75!34.04!E2F1;;chr3:12329397..12329433,+!p2@PPARG!0.75!11.35!PPARG;;chr17:59477197..59477212,+!p2@TBX2!0.75!8.51!TBX2;;chr19:13134772..13134822,+!p2@NFIX!0.75!7.09!NFIX;;chr11:65686776..65686787,+!p9@DRAP1!0.75!5.67!DRAP1;;chr5:321810..321877,+!p1@AHRR!0.74!15.60!AHRR;;chr2:214015111..214015179,-!p1@IKZF2!0.74!8.51!IKZF2;;chr6:31126291..31126399,+!p1@TCF19!0.73!46.81!TCF19;;chr12:115121962..115121987,-!p1@TBX3!0.73!41.14!TBX3;;chr5:92918919..92918942,+!p1@NR2F1!0.72!21.28!NR2F1;;chr3:12329358..12329393,+!p3@PPARG!0.72!11.35!PPARG;;chr2:5832493..5832507,+!p2@SOX11!0.72!4.26!SOX11;;chr2:85981073..85981091,+!p5@ATOH8!0.72!4.26!ATOH8;;chr2:96012397..96012417,+!p3@KCNIP3!0.72!4.26!KCNIP3;;chr15:67418177..67418204,+!p9@SMAD3!0.72!4.26!SMAD3;;chr16:54320280..54320291,-!p9@IRX3!0.72!4.26!IRX3;;chr16:86601088..86601105,+!p5@FOXC2!0.72!4.26!FOXC2;;chr17:41622731..41622764,-!p5@ETV4!0.72!4.26!ETV4;;chr17:41623716..41623727,-!p12@ETV4!0.72!4.26!ETV4;;chr17:46621146..46621180,-!p10@HOXB2!0.72!4.26!HOXB2;;chr17:46675469..46675481,-!p4@HOXB6!0.72!4.26!HOXB6;;chr17:46692603..46692621,-!p6@HOXB8!0.72!4.26!HOXB8;;chr19:46801639..46801699,+!p1@HIF3A!0.72!4.26!HIF3A;;chr7:27196217..27196246,-!p2@HOXA7!0.72!4.26!HOXA7;;chr7:96654026..96654061,-!p2@DLX5!0.72!4.26!DLX5;;chr8:60031934..60031986,-!p6@TOX!0.72!4.26!TOX;;chr11:65668011..65668020,-!p3@FOSL1!0.72!4.26!FOSL1;;chr11:65688877..65688891,+!p13@DRAP1!0.72!4.26!DRAP1;;chr12:115122303..115122314,-!p6@TBX3!0.72!4.26!TBX3;;chr12:54393880..54393962,+!p1@HOXC9!0.72!4.26!HOXC9;;chr12:54394059..54394088,+!p3@HOXC9!0.72!4.26!HOXC9;;chr12:54394416..54394467,+!p5@HOXC9!0.72!4.26!HOXC9;;chr12:54402694..54402705,+!p5@HOXC8!0.72!4.26!HOXC8;;chr12:54402729..54402743,+!p3@HOXC8!0.72!4.26!HOXC8;;chr12:54402790..54402805,+!p2@HOXC8!0.72!4.26!HOXC8;;chr12:54447868..54447892,+!p6@HOXC6,p7@HOXC4!0.72!4.26!HOXC6;;chr12:66218413..66218418,+!p17@HMGA2!0.72!4.26!HMGA2;;chr19:1592714..1592762,-!p1@MBD3!0.71!35.46!MBD3;;chr12:3068544..3068597,+!p1@TEAD4!0.70!26.95!TEAD4;;chr20:42295713..42295738,+!p2@MYBL2!0.70!26.95!MYBL2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.69!4.26!GLIS1;;chr12:66218152..66218174,+!p10@HMGA2!0.69!4.26!HMGA2;;chr12:7079780..7079791,-!p2@PHB2!0.68!22.70!PHB2;;chr7:137686763..137686784,-!p5@CREB3L2!0.68!7.09!CREB3L2;;chr11:46299186..46299195,+!p3@CREB3L1!0.68!4.26!CREB3L1;;chr7:150945754..150945789,-!p2@SMARCD3!0.67!12.77!SMARCD3;;chr11:65686952..65686975,+!p5@DRAP1!0.66!22.70!DRAP1;;chr3:52001426..52001447,-!p3@PCBP4!0.66!11.35!PCBP4;;chr1:247171347..247171366,-!p2@ZNF695!0.66!7.09!ZNF695;;chr20:32274150..32274166,-!p2@E2F1!0.65!7.09!E2F1;;chr5:92919068..92919082,+!p5@NR2F1!0.65!4.26!NR2F1;;chr8:49833978..49833996,-!p1@SNAI2!0.64!82.27!SNAI2;;chr5:138609782..138609826,+!p5@MATR3!0.64!25.53!MATR3;;chr19:24097675..24097699,+!p1@ZNF726!0.64!12.77!ZNF726;;chr1:151032833..151032850,+!p3@MLLT11!0.64!8.51!MLLT11;;chr20:50721803..50721857,-!p2@ZFP64!0.64!5.67!ZFP64;;chr12:66218003..66218018,+!p9@HMGA2!0.64!4.26!HMGA2;;chr13:114238987..114238994,+!p2@TFDP1!0.64!4.26!TFDP1;;chr3:52001448..52001478,-!p2@PCBP4!0.63!53.90!PCBP4;;chr19:58962974..58963001,+!p1@ZNF324B!0.63!17.02!ZNF324B;;chr8:60031682..60031710,-!p2@TOX!0.63!5.67!TOX;;chr5:72744562..72744573,-!p3@FOXD1!0.63!4.26!FOXD1;;chr15:96874012..96874042,+!p2@NR2F2!0.62!34.04!NR2F2;;chr8:77593474..77593612,+!p1@ZFHX4!0.62!15.60!ZFHX4;;chr1:8483878..8483907,-!p4@RERE!0.62!14.18!RERE;;chr2:85981222..85981259,+!p2@ATOH8!0.62!5.67!ATOH8;;chr3:141087393..141087426,+!p3@ZBTB38!0.61!14.18!ZBTB38;;chr1:8483756..8483809,-!p5@RERE!0.61!9.93!RERE;;chr19:45260775..45260838,+!p5@BCL3!0.61!4.26!BCL3;;chr11:61520075..61520136,+!p1@C11orf9!0.60!7.09!C11orf9;;chr13:74708269..74708291,-!p7@KLF12!0.60!4.26!KLF12;;chr1:8938709..8938720,-!p3@ENO1!0.59!171.64!ENO1;;chr20:39946361..39946379,-!p2@ZHX3!0.59!9.93!ZHX3;;chr16:54320675..54320715,-!p1@IRX3!0.59!7.09!IRX3;;chr19:49864746..49864780,-!p2@TEAD2!0.59!4.26!TEAD2;;chr17:41623692..41623715,-!p1@ETV4!0.58!14.18!ETV4;;chr3:126076264..126076305,-!p2@KLF15!0.58!4.26!KLF15;;chr2:200320768..200320800,-!p4@SATB2!0.58!2.84!SATB2;;chr2:85981008..85981025,+!p7@ATOH8!0.58!2.84!ATOH8;;chr4:109089215..109089236,-!p25@LEF1!0.58!2.84!LEF1;;chr4:57522674..57522699,-!p5@HOPX!0.58!2.84!HOPX;;chr15:80843484..80843499,+!p5@ARNT2!0.58!2.84!ARNT2;;chr15:83953373..83953386,-!p2@BNC1!0.58!2.84!BNC1;;chr15:90294087..90294115,-!p1@MESP1!0.58!2.84!MESP1;;chr16:54320322..54320343,-!p7@IRX3!0.58!2.84!IRX3;;chr16:86600870..86600921,+!p2@FOXC2!0.58!2.84!FOXC2;;chr17:46655672..46655697,-!p3@HOXB4!0.58!2.84!HOXB4;;chr17:46671504..46671541,-!p2@HOXB5!0.58!2.84!HOXB5;;chr17:46675539..46675551,-!p7@HOXB6!0.58!2.84!HOXB6;;chr17:46692318..46692362,-!p5@HOXB8!0.58!2.84!HOXB8;;chr17:46703212..46703238,-!p2@HOXB9!0.58!2.84!HOXB9;;chr19:11750543..11750565,+!p2@ZNF833P!0.58!2.84!ZNF833P;;chr5:76382989..76383001,-!p4@ZBED3!0.58!2.84!ZBED3;;chr5:9291878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:8185346..8185360,+!p2@FOXJ2!0.19!1.42!FOXJ2;;chr3:40547505..40547545,+!p2@ZNF620!0.19!1.42!ZNF620;;chr3:71114279..71114308,-!p13@FOXP1!0.19!1.42!FOXP1;;chr4:103422457..103422469,+!p3@NFKB1!0.19!1.42!NFKB1;;chr11:65101305..65101359,+!p1@DPF2!0.18!53.90!DPF2;;chr6:155635583..155635644,-!p1@TFB1M!0.18!17.02!TFB1M;;chr19:4066803..4066886,-!p1@ZBTB7A!0.18!14.18!ZBTB7A;;chr1:43312258..43312310,+!p1@ZNF691!0.18!12.77!ZNF691;;chr15:96873892..96873919,+!p4@NR2F2!0.18!12.77!NR2F2;;chr12:57400261..57400344,-!p1@ZBTB39!0.18!5.67!ZBTB39;;chr8:146176199..146176272,-!p1@ZNF16!0.18!5.67!ZNF16;;chr6:35227282..35227330,+!p2@ZNF76!0.18!4.26!ZNF76;;chr10:94449675..94449694,+!p2@HHEX!0.18!2.84!HHEX;;chr2:172967621..172967637,-!p1@DLX2!0.18!2.84!DLX2;;chr2:208030299..208030332,-!p6@KLF7!0.18!1.42!KLF7;;chr3:150126101..150126118,+!p6@TSC22D2!0.18!1.42!TSC22D2;;chr3:168864315..168864339,-!p2@MECOM!0.18!1.42!MECOM;;chr4:87968203..87968221,+!p11@AFF1!0.18!1.42!AFF1;;chr15:57211660..57211687,+!p6@TCF12!0.18!1.42!TCF12;;chr19:17356189..17356221,-!p2@NR2F6!0.18!1.42!NR2F6;;chr19:23941647..23941672,-!p2@ZNF681!0.18!1.42!ZNF681;;chr19:54024251..54024305,+!p4@ZNF331!0.18!1.42!ZNF331;;chr1:151032922..151032951,+!p2@MLLT11!0.18!1.42!MLLT11;;chr1:151431811..151431832,-!p3@POGZ!0.18!1.42!POGZ;;chr1:8483849..8483868,-!p14@RERE!0.18!1.42!RERE;;chr12:80084279..80084293,-!p8@PAWR!0.18!1.42!PAWR;;chr14:64971014..64971044,+!p4@ZBTB1!0.18!1.42!ZBTB1;;chr6:45390269..45390298,+!p5@RUNX2!0.18!1.42!RUNX2;;chr7:99613195..99613206,+!p4@ZKSCAN1!0.18!1.42!ZKSCAN1;;chr9:109625229..109625282,+!p2@ZNF462!0.18!1.42!ZNF462;;chr9:110252074..110252079,-!p3@KLF4!0.18!1.42!KLF4;;chr8:128748470..128748487,+!p1@MYC!0.17!147.52!MYC;;chr3:71114066..71114114,-!p1@FOXP1!0.17!26.95!FOXP1;;chr3:126194707..126194798,-!p1@ZXDC!0.17!21.28!ZXDC;;chr14:64970494..64970578,-!p1@ZBTB25!0.17!12.77!ZBTB25;;chr6:41514078..41514158,+!p1@FOXP4!0.17!11.35!FOXP4;;chr19:1592828..1592910,-!p2@MBD3!0.17!9.93!MBD3;;chr12:27485785..27485816,+!p1@ARNTL2!0.17!8.51!ARNTL2;;chr17:42296855..42296894,-!p4@UBTF!0.17!4.26!UBTF;;chr1:43148792..43148849,+!p2@YBX1!0.17!4.26!YBX1;;chr12:96588368..96588394,+!p3@ELK3!0.17!2.84!ELK3;;chr18:3451646..3451691,+!p3@TGIF1!0.17!2.84!TGIF1;;chr14:89029308..89029318,+!p3@ZC3H14!0.17!1.42!ZC3H14;;chr15:31619570..31619615,+!p6@KLF13!0.17!1.42!KLF13;;chr15:57511609..57511651,+!p2@TCF12!0.17!1.42!TCF12;;chr16:30418894..30418909,+!p2@ZNF771!0.17!1.42!ZNF771;;chr18:3451584..3451606,+!p12@TGIF1!0.17!1.42!TGIF1;;chr18:47814010..47814021,-!p3@CXXC1!0.17!1.42!CXXC1;;chr19:12476469..12476509,-!p2@ZNF442!0.17!1.42!ZNF442;;chr19:12662314..12662328,-!p2@ZNF564!0.17!1.42!ZNF564;;chr19:22817119..22817145,+!p1@ZNF492!0.17!1.42!ZNF492;;chr19:37997812..37997866,+!p1@ZNF793!0.17!1.42!ZNF793;;chr19:42788636..42788660,+!p1@CIC!0.17!1.42!CIC;;chr1:226595648..226595659,-!p3@PARP1!0.17!1.42!PARP1;;chr1:249132462..249132481,+!p6@ZNF672!0.17!1.42!ZNF672;;chr6:1610293..1610310,+!p1@FOXC1!0.17!1.42!FOXC1;;chr6:21597514..21597578,+!p4@SOX4!0.17!1.42!SOX4;;chr13:45151509..45151539,-!p6@TSC22D1!0.17!1.42!TSC22D1;;chr12:53835508..53835533,+!p1@PRR13,p2@PCBP2!0.16!97.88!PCBP2;;chr8:145515263..145515299,+!p1@HSF1!0.16!93.62!HSF1;;chr3:52008016..52008071,-!p1@ABHD14A-ACY1,p1@ABHD14B,p1@PCBP4!0.16!75.18!PCBP4;;chr16:30798492..30798535,-!p1@ZNF629!0.16!19.86!ZNF629;;chr11:695006..695074,-!p1@DEAF1!0.16!19.86!DEAF1;;chr19:57702846..57702891,+!p1@ZNF264!0.16!12.77!ZNF264;;
 
|expression_enrichment_score=chr7:19157248..19157268,-!p1@TWIST1!1.90!209.94!TWIST1;;chr12:66218255..66218304,+!p3@HMGA2!1.80!161.71!HMGA2;;chr6:34204921..34204939,+!p3@HMGA1!1.71!1421.33!HMGA1;;chr14:61116183..61116208,-!p1@SIX1!1.62!148.94!SIX1;;chr12:66218598..66218645,+!p2@HMGA2!1.56!156.03!HMGA2;;chr5:2751762..2751784,-!p1@IRX2!1.54!34.04!IRX2;;chr16:86600426..86600441,+!p1@FOXC2!1.51!75.18!FOXC2;;chr2:5832508..5832524,+!p1@SOX11!1.45!26.95!SOX11;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.45!26.95!HOXC5;;chr17:46675420..46675465,-!p3@HOXB6!1.37!25.53!HOXB6;;chr11:65686802..65686818,+!p6@DRAP1!1.33!35.46!DRAP1;;chr12:66218212..66218244,+!p5@HMGA2!1.27!25.53!HMGA2;;chr17:46675558..46675577,-!p2@HOXB6!1.26!17.02!HOXB6;;chr9:132427883..132427951,+!p2@PRRX2!1.26!17.02!PRRX2;;chr12:66218836..66218888,+!p1@HMGA2!1.25!153.20!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!1.22!15.60!HMGA2;;chr17:46682321..46682362,-!p1@HOXB6!1.22!15.60!HOXB6;;chr11:65687222..65687240,+!p7@DRAP1!1.19!18.44!DRAP1;;chr12:54394309..54394336,+!p2@HOXC9!1.18!14.18!HOXC9;;chr12:54402745..54402788,+!p1@HOXC8!1.14!12.77!HOXC8;;chr12:66218469..66218477,+!p16@HMGA2!1.14!12.77!HMGA2;;chr17:59477403..59477414,+!p4@TBX2!1.14!12.77!TBX2;;chr11:46299539..46299620,+!p2@CREB3L1!1.13!21.28!CREB3L1;;chr11:65686732..65686756,+!p2@DRAP1!1.12!51.07!DRAP1;;chr9:132427972..132428056,+!p1@PRRX2!1.11!15.60!PRRX2;;chr5:2751785..2751808,-!p2@IRX2!1.09!11.35!IRX2;;chr6:134210243..134210257,+!p1@TCF21!1.09!11.35!TCF21;;chr12:66218183..66218209,+!p4@HMGA2!1.08!21.28!HMGA2;;chr2:200322654..200322707,-!p2@SATB2!1.07!15.60!SATB2;;chr11:46299199..46299233,+!p1@CREB3L1!1.06!55.32!CREB3L1;;chr7:19157043..19157088,-!p2@TWIST1!1.04!25.53!TWIST1;;chr5:3595977..3595999,+!p1@IRX1!1.04!9.93!IRX1;;chr12:54422217..54422239,+!p3@HOXC6!1.04!9.93!HOXC6;;chr12:54447637..54447659,+!p4@HOXC4!1.04!9.93!HOXC4;;chr2:85981107..85981120,+!p3@ATOH8!1.04!9.93!ATOH8;;chr16:86600458..86600461,+!p3@FOXC2!1.04!9.93!FOXC2;;chr17:46690839..46690884,-!p1@HOXB8!1.04!9.93!HOXB8;;chr5:176738887..176738934,-!p1@MXD3!1.03!65.25!MXD3;;chr6:34204672..34204692,+!p1@HMGA1!1.02!1083.73!HMGA1;;chr12:66218573..66218596,+!p7@HMGA2!1.02!14.18!HMGA2;;chr2:19558373..19558392,-!p1@OSR1!1.01!25.53!OSR1;;chr17:46687959..46688007,-!p2@HOXB7!1.01!12.77!HOXB7;;chr1:170633262..170633285,+!p3@PRRX1!0.98!9.93!PRRX1;;chr2:176994408..176994492,+!p1@HOXD8!0.98!8.51!HOXD8;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.98!8.51!HOXC5;;chr1:170633348..170633399,+!p2@PRRX1!0.97!11.35!PRRX1;;chr12:66218378..66218401,+!p6@HMGA2!0.96!12.77!HMGA2;;chr12:2986206..2986258,-!p2@FOXM1!0.95!49.65!FOXM1;;chr17:59477233..59477263,+!p1@TBX2!0.95!25.53!TBX2;;chr19:38720294..38720348,-!p1@DPF1!0.95!9.93!DPF1;;chr12:66218443..66218461,+!p8@HMGA2!0.94!9.93!HMGA2;;chr20:30193083..30193098,+!p1@ID1!0.92!612.79!ID1;;chr16:54320646..54320672,-!p2@IRX3!0.92!11.35!IRX3;;chr6:45296048..45296082,+!p1@RUNX2!0.92!8.51!RUNX2;;chr5:72744594..72744609,-!p1@FOXD1!0.91!34.04!FOXD1;;chr8:145669791..145669834,-!p1@TONSL!0.91!21.28!TONSL;;chr11:65687243..65687276,+!p8@DRAP1!0.91!9.93!DRAP1;;chr12:115122318..115122331,-!p2@TBX3!0.91!7.09!TBX3;;chr12:54410948..54410992,+!p3@HOXC5!0.91!7.09!HOXC5;;chr12:66218420..66218439,+!p12@HMGA2!0.91!7.09!HMGA2;;chr12:66218923..66218934,+!p14@HMGA2!0.91!7.09!HMGA2;;chr16:54320127..54320148,-!p6@IRX3!0.91!7.09!IRX3;;chr17:46675586..46675600,-!p6@HOXB6!0.91!7.09!HOXB6;;chr17:46691732..46691766,-!p4@HOXB8!0.91!7.09!HOXB8;;chr19:47523058..47523114,+!p1@NPAS1!0.91!7.09!NPAS1;;chr1:2461692..2461710,-!p1@HES5!0.91!7.09!HES5;;chr5:3595961..3595975,+!p3@IRX1!0.91!7.09!IRX1;;chr12:54447599..54447630,+!p3@HOXC4!0.90!8.51!HOXC4;;chr2:85980951..85981004,+!p1@ATOH8!0.89!11.35!ATOH8;;chr16:54320617..54320643,-!p3@IRX3!0.88!8.51!IRX3;;chr17:41622765..41622821,-!p2@ETV4!0.87!9.93!ETV4;;chr1:8926441..8926473,-!p10@ENO1!0.87!9.93!ENO1;;chr8:49833948..49833973,-!p2@SNAI2!0.86!42.55!SNAI2;;chr1:170632285..170632309,+!p1@PRRX1!0.86!7.09!PRRX1;;chr14:61116168..61116180,-!p2@SIX1!0.85!7.09!SIX1;;chr16:54320101..54320125,-!p4@IRX3!0.83!8.51!IRX3;;chr20:48599506..48599526,+!p1@SNAI1!0.82!38.30!SNAI1;;chr11:65687158..65687216,+!p4@DRAP1!0.82!34.04!DRAP1;;chr2:239756739..239756755,+!p2@TWIST2!0.82!9.93!TWIST2;;chr22:19748231..19748317,+!p1@TBX1!0.82!5.67!TBX1;;chr4:299227..299272,-!p1@ZNF732!0.82!5.67!ZNF732;;chr11:46316699..46316719,+!p10@CREB3L1!0.82!5.67!CREB3L1;;chr5:3595934..3595957,+!p2@IRX1!0.82!5.67!IRX1;;chr7:27183291..27183324,-!p1@HOXA5!0.82!5.67!HOXA5;;chr17:8027418..8027432,-!p1@HES7!0.82!5.67!HES7;;chr1:23885981..23886002,-!p1@ID3!0.80!1004.29!ID3;;chr11:65667846..65667868,-!p1@FOSL1!0.79!150.36!FOSL1;;chr11:65687362..65687436,+!p3@DRAP1!0.79!25.53!DRAP1;;chr20:42295745..42295765,+!p1@MYBL2!0.77!87.95!MYBL2;;chr6:34204973..34204990,+!p4@HMGA1!0.77!72.34!HMGA1;;chr15:83953397..83953425,-!p1@BNC1!0.77!5.67!BNC1;;chr11:65667884..65667895,-!p2@FOSL1!0.76!19.86!FOSL1;;chr16:54320158..54320200,-!p5@IRX3!0.76!7.09!IRX3;;chr16:54964740..54964789,+!p1@IRX5!0.76!7.09!IRX5;;chr20:32274179..32274213,-!p1@E2F1!0.75!34.04!E2F1;;chr3:12329397..12329433,+!p2@PPARG!0.75!11.35!PPARG;;chr17:59477197..59477212,+!p2@TBX2!0.75!8.51!TBX2;;chr19:13134772..13134822,+!p2@NFIX!0.75!7.09!NFIX;;chr11:65686776..65686787,+!p9@DRAP1!0.75!5.67!DRAP1;;chr5:321810..321877,+!p1@AHRR!0.74!15.60!AHRR;;chr2:214015111..214015179,-!p1@IKZF2!0.74!8.51!IKZF2;;chr6:31126291..31126399,+!p1@TCF19!0.73!46.81!TCF19;;chr12:115121962..115121987,-!p1@TBX3!0.73!41.14!TBX3;;chr5:92918919..92918942,+!p1@NR2F1!0.72!21.28!NR2F1;;chr3:12329358..12329393,+!p3@PPARG!0.72!11.35!PPARG;;chr2:5832493..5832507,+!p2@SOX11!0.72!4.26!SOX11;;chr2:85981073..85981091,+!p5@ATOH8!0.72!4.26!ATOH8;;chr2:96012397..96012417,+!p3@KCNIP3!0.72!4.26!KCNIP3;;chr15:67418177..67418204,+!p9@SMAD3!0.72!4.26!SMAD3;;chr16:54320280..54320291,-!p9@IRX3!0.72!4.26!IRX3;;chr16:86601088..86601105,+!p5@FOXC2!0.72!4.26!FOXC2;;chr17:41622731..41622764,-!p5@ETV4!0.72!4.26!ETV4;;chr17:41623716..41623727,-!p12@ETV4!0.72!4.26!ETV4;;chr17:46621146..46621180,-!p10@HOXB2!0.72!4.26!HOXB2;;chr17:46675469..46675481,-!p4@HOXB6!0.72!4.26!HOXB6;;chr17:46692603..46692621,-!p6@HOXB8!0.72!4.26!HOXB8;;chr19:46801639..46801699,+!p1@HIF3A!0.72!4.26!HIF3A;;chr7:27196217..27196246,-!p2@HOXA7!0.72!4.26!HOXA7;;chr7:96654026..96654061,-!p2@DLX5!0.72!4.26!DLX5;;chr8:60031934..60031986,-!p6@TOX!0.72!4.26!TOX;;chr11:65668011..65668020,-!p3@FOSL1!0.72!4.26!FOSL1;;chr11:65688877..65688891,+!p13@DRAP1!0.72!4.26!DRAP1;;chr12:115122303..115122314,-!p6@TBX3!0.72!4.26!TBX3;;chr12:54393880..54393962,+!p1@HOXC9!0.72!4.26!HOXC9;;chr12:54394059..54394088,+!p3@HOXC9!0.72!4.26!HOXC9;;chr12:54394416..54394467,+!p5@HOXC9!0.72!4.26!HOXC9;;chr12:54402694..54402705,+!p5@HOXC8!0.72!4.26!HOXC8;;chr12:54402729..54402743,+!p3@HOXC8!0.72!4.26!HOXC8;;chr12:54402790..54402805,+!p2@HOXC8!0.72!4.26!HOXC8;;chr12:54447868..54447892,+!p6@HOXC6,p7@HOXC4!0.72!4.26!HOXC6;;chr12:66218413..66218418,+!p17@HMGA2!0.72!4.26!HMGA2;;chr19:1592714..1592762,-!p1@MBD3!0.71!35.46!MBD3;;chr12:3068544..3068597,+!p1@TEAD4!0.70!26.95!TEAD4;;chr20:42295713..42295738,+!p2@MYBL2!0.70!26.95!MYBL2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.69!4.26!GLIS1;;chr12:66218152..66218174,+!p10@HMGA2!0.69!4.26!HMGA2;;chr12:7079780..7079791,-!p2@PHB2!0.68!22.70!PHB2;;chr7:137686763..137686784,-!p5@CREB3L2!0.68!7.09!CREB3L2;;chr11:46299186..46299195,+!p3@CREB3L1!0.68!4.26!CREB3L1;;chr7:150945754..150945789,-!p2@SMARCD3!0.67!12.77!SMARCD3;;chr11:65686952..65686975,+!p5@DRAP1!0.66!22.70!DRAP1;;chr3:52001426..52001447,-!p3@PCBP4!0.66!11.35!PCBP4;;chr1:247171347..247171366,-!p2@ZNF695!0.66!7.09!ZNF695;;chr20:32274150..32274166,-!p2@E2F1!0.65!7.09!E2F1;;chr5:92919068..92919082,+!p5@NR2F1!0.65!4.26!NR2F1;;chr8:49833978..49833996,-!p1@SNAI2!0.64!82.27!SNAI2;;chr5:138609782..138609826,+!p5@MATR3!0.64!25.53!MATR3;;chr19:24097675..24097699,+!p1@ZNF726!0.64!12.77!ZNF726;;chr1:151032833..151032850,+!p3@MLLT11!0.64!8.51!MLLT11;;chr20:50721803..50721857,-!p2@ZFP64!0.64!5.67!ZFP64;;chr12:66218003..66218018,+!p9@HMGA2!0.64!4.26!HMGA2;;chr13:114238987..114238994,+!p2@TFDP1!0.64!4.26!TFDP1;;chr3:52001448..52001478,-!p2@PCBP4!0.63!53.90!PCBP4;;chr19:58962974..58963001,+!p1@ZNF324B!0.63!17.02!ZNF324B;;chr8:60031682..60031710,-!p2@TOX!0.63!5.67!TOX;;chr5:72744562..72744573,-!p3@FOXD1!0.63!4.26!FOXD1;;chr15:96874012..96874042,+!p2@NR2F2!0.62!34.04!NR2F2;;chr8:77593474..77593612,+!p1@ZFHX4!0.62!15.60!ZFHX4;;chr1:8483878..8483907,-!p4@RERE!0.62!14.18!RERE;;chr2:85981222..85981259,+!p2@ATOH8!0.62!5.67!ATOH8;;chr3:141087393..141087426,+!p3@ZBTB38!0.61!14.18!ZBTB38;;chr1:8483756..8483809,-!p5@RERE!0.61!9.93!RERE;;chr19:45260775..45260838,+!p5@BCL3!0.61!4.26!BCL3;;chr11:61520075..61520136,+!p1@C11orf9!0.60!7.09!C11orf9;;chr13:74708269..74708291,-!p7@KLF12!0.60!4.26!KLF12;;chr1:8938709..8938720,-!p3@ENO1!0.59!171.64!ENO1;;chr20:39946361..39946379,-!p2@ZHX3!0.59!9.93!ZHX3;;chr16:54320675..54320715,-!p1@IRX3!0.59!7.09!IRX3;;chr19:49864746..49864780,-!p2@TEAD2!0.59!4.26!TEAD2;;chr17:41623692..41623715,-!p1@ETV4!0.58!14.18!ETV4;;chr3:126076264..126076305,-!p2@KLF15!0.58!4.26!KLF15;;chr2:200320768..200320800,-!p4@SATB2!0.58!2.84!SATB2;;chr2:85981008..85981025,+!p7@ATOH8!0.58!2.84!ATOH8;;chr4:109089215..109089236,-!p25@LEF1!0.58!2.84!LEF1;;chr4:57522674..57522699,-!p5@HOPX!0.58!2.84!HOPX;;chr15:80843484..80843499,+!p5@ARNT2!0.58!2.84!ARNT2;;chr15:83953373..83953386,-!p2@BNC1!0.58!2.84!BNC1;;chr15:90294087..90294115,-!p1@MESP1!0.58!2.84!MESP1;;chr16:54320322..54320343,-!p7@IRX3!0.58!2.84!IRX3;;chr16:86600870..86600921,+!p2@FOXC2!0.58!2.84!FOXC2;;chr17:46655672..46655697,-!p3@HOXB4!0.58!2.84!HOXB4;;chr17:46671504..46671541,-!p2@HOXB5!0.58!2.84!HOXB5;;chr17:46675539..46675551,-!p7@HOXB6!0.58!2.84!HOXB6;;chr17:46692318..46692362,-!p5@HOXB8!0.58!2.84!HOXB8;;chr17:46703212..46703238,-!p2@HOXB9!0.58!2.84!HOXB9;;chr19:11750543..11750565,+!p2@ZNF833P!0.58!2.84!ZNF833P;;chr5:76382989..76383001,-!p4@ZBED3!0.58!2.84!ZBED3;;chr5:9291878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:8185346..8185360,+!p2@FOXJ2!0.19!1.42!FOXJ2;;chr3:40547505..40547545,+!p2@ZNF620!0.19!1.42!ZNF620;;chr3:71114279..71114308,-!p13@FOXP1!0.19!1.42!FOXP1;;chr4:103422457..103422469,+!p3@NFKB1!0.19!1.42!NFKB1;;chr11:65101305..65101359,+!p1@DPF2!0.18!53.90!DPF2;;chr6:155635583..155635644,-!p1@TFB1M!0.18!17.02!TFB1M;;chr19:4066803..4066886,-!p1@ZBTB7A!0.18!14.18!ZBTB7A;;chr1:43312258..43312310,+!p1@ZNF691!0.18!12.77!ZNF691;;chr15:96873892..96873919,+!p4@NR2F2!0.18!12.77!NR2F2;;chr12:57400261..57400344,-!p1@ZBTB39!0.18!5.67!ZBTB39;;chr8:146176199..146176272,-!p1@ZNF16!0.18!5.67!ZNF16;;chr6:35227282..35227330,+!p2@ZNF76!0.18!4.26!ZNF76;;chr10:94449675..94449694,+!p2@HHEX!0.18!2.84!HHEX;;chr2:172967621..172967637,-!p1@DLX2!0.18!2.84!DLX2;;chr2:208030299..208030332,-!p6@KLF7!0.18!1.42!KLF7;;chr3:150126101..150126118,+!p6@TSC22D2!0.18!1.42!TSC22D2;;chr3:168864315..168864339,-!p2@MECOM!0.18!1.42!MECOM;;chr4:87968203..87968221,+!p11@AFF1!0.18!1.42!AFF1;;chr15:57211660..57211687,+!p6@TCF12!0.18!1.42!TCF12;;chr19:17356189..17356221,-!p2@NR2F6!0.18!1.42!NR2F6;;chr19:23941647..23941672,-!p2@ZNF681!0.18!1.42!ZNF681;;chr19:54024251..54024305,+!p4@ZNF331!0.18!1.42!ZNF331;;chr1:151032922..151032951,+!p2@MLLT11!0.18!1.42!MLLT11;;chr1:151431811..151431832,-!p3@POGZ!0.18!1.42!POGZ;;chr1:8483849..8483868,-!p14@RERE!0.18!1.42!RERE;;chr12:80084279..80084293,-!p8@PAWR!0.18!1.42!PAWR;;chr14:64971014..64971044,+!p4@ZBTB1!0.18!1.42!ZBTB1;;chr6:45390269..45390298,+!p5@RUNX2!0.18!1.42!RUNX2;;chr7:99613195..99613206,+!p4@ZKSCAN1!0.18!1.42!ZKSCAN1;;chr9:109625229..109625282,+!p2@ZNF462!0.18!1.42!ZNF462;;chr9:110252074..110252079,-!p3@KLF4!0.18!1.42!KLF4;;chr8:128748470..128748487,+!p1@MYC!0.17!147.52!MYC;;chr3:71114066..71114114,-!p1@FOXP1!0.17!26.95!FOXP1;;chr3:126194707..126194798,-!p1@ZXDC!0.17!21.28!ZXDC;;chr14:64970494..64970578,-!p1@ZBTB25!0.17!12.77!ZBTB25;;chr6:41514078..41514158,+!p1@FOXP4!0.17!11.35!FOXP4;;chr19:1592828..1592910,-!p2@MBD3!0.17!9.93!MBD3;;chr12:27485785..27485816,+!p1@ARNTL2!0.17!8.51!ARNTL2;;chr17:42296855..42296894,-!p4@UBTF!0.17!4.26!UBTF;;chr1:43148792..43148849,+!p2@YBX1!0.17!4.26!YBX1;;chr12:96588368..96588394,+!p3@ELK3!0.17!2.84!ELK3;;chr18:3451646..3451691,+!p3@TGIF1!0.17!2.84!TGIF1;;chr14:89029308..89029318,+!p3@ZC3H14!0.17!1.42!ZC3H14;;chr15:31619570..31619615,+!p6@KLF13!0.17!1.42!KLF13;;chr15:57511609..57511651,+!p2@TCF12!0.17!1.42!TCF12;;chr16:30418894..30418909,+!p2@ZNF771!0.17!1.42!ZNF771;;chr18:3451584..3451606,+!p12@TGIF1!0.17!1.42!TGIF1;;chr18:47814010..47814021,-!p3@CXXC1!0.17!1.42!CXXC1;;chr19:12476469..12476509,-!p2@ZNF442!0.17!1.42!ZNF442;;chr19:12662314..12662328,-!p2@ZNF564!0.17!1.42!ZNF564;;chr19:22817119..22817145,+!p1@ZNF492!0.17!1.42!ZNF492;;chr19:37997812..37997866,+!p1@ZNF793!0.17!1.42!ZNF793;;chr19:42788636..42788660,+!p1@CIC!0.17!1.42!CIC;;chr1:226595648..226595659,-!p3@PARP1!0.17!1.42!PARP1;;chr1:249132462..249132481,+!p6@ZNF672!0.17!1.42!ZNF672;;chr6:1610293..1610310,+!p1@FOXC1!0.17!1.42!FOXC1;;chr6:21597514..21597578,+!p4@SOX4!0.17!1.42!SOX4;;chr13:45151509..45151539,-!p6@TSC22D1!0.17!1.42!TSC22D1;;chr12:53835508..53835533,+!p1@PRR13,p2@PCBP2!0.16!97.88!PCBP2;;chr8:145515263..145515299,+!p1@HSF1!0.16!93.62!HSF1;;chr3:52008016..52008071,-!p1@ABHD14A-ACY1,p1@ABHD14B,p1@PCBP4!0.16!75.18!PCBP4;;chr16:30798492..30798535,-!p1@ZNF629!0.16!19.86!ZNF629;;chr11:695006..695074,-!p1@DEAF1!0.16!19.86!DEAF1;;chr19:57702846..57702891,+!p1@ZNF264!0.16!12.77!ZNF264;;
 +
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002092;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002540;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
 
|ffid_belonging_in_development=CL:0000134
 
|ffid_belonging_in_development=CL:0000134
 
|fonse_cell_line=
 
|fonse_cell_line=
Line 41: Line 42:
 
|fonse_treatment_closure=
 
|fonse_treatment_closure=
 
|has_quality=
 
|has_quality=
 +
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor2.CNhs12100.11616-122A5.hg19.nobarcode.bam
 +
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor2.CNhs12100.11616-122A5.hg19.ctss.bed.gz
 +
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor2.CNhs12100.11616-122A5.hg19.nobarcode.rdna.fa.gz
 +
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor2.CNhs12100.11616-122A5.hg38.nobarcode.bam
 +
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor2.CNhs12100.11616-122A5.hg38.nobarcode.ctss.bed.gz
 
|id=FF:11616-122A5
 
|id=FF:11616-122A5
 
|is_a=EFO:0002091;;FF:0000097
 
|is_a=EFO:0002091;;FF:0000097
Line 46: Line 52:
 
|library_id=CNhs12100
 
|library_id=CNhs12100
 
|library_id_phase_based=2:CNhs12100
 
|library_id_phase_based=2:CNhs12100
 +
|microRNAs=
 +
|microRNAs_nn=
 +
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11616
 +
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11616
 
|name=Mesenchymal Stem Cells - bone marrow, donor2
 
|name=Mesenchymal Stem Cells - bone marrow, donor2
 
|namespace=FANTOM5
 
|namespace=FANTOM5
Line 53: Line 63:
 
|profile_rnaseq=
 
|profile_rnaseq=
 
|profile_srnaseq=SRhi10005,,,
 
|profile_srnaseq=SRhi10005,,,
 +
|refex=http://refex.dbcls.jp/genelist.php?lang
 
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Line 90: Line 101:
 
|top_motifs=PBX1:1.64580801491;GZF1:1.27413080254;HOX{A5,B5}:1.21338508684;NR3C1:1.17443205097;NR5A1,2:1.04595257148;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.01504740023;HES1:1.00553307235;GFI1:0.962438142366;LEF1_TCF7_TCF7L1,2:0.919576398529;POU2F1..3:0.903700605464;NR6A1:0.834369360824;GTF2A1,2:0.821993479463;ONECUT1,2:0.737785482418;TOPORS:0.733832068985;RXRA_VDR{dimer}:0.71787991318;ESR1:0.705908852782;EN1,2:0.696135656641;GFI1B:0.684810325489;SPZ1:0.675619727113;E2F1..5:0.654628775575;TAL1_TCF{3,4,12}:0.651749397411;NFE2L1:0.61894635739;PAX3,7:0.582304201164;PPARG:0.580091695489;HOX{A6,A7,B6,B7}:0.579357272614;ZIC1..3:0.558784042379;KLF4:0.546205530723;STAT5{A,B}:0.501267129103;PAX8:0.494749333704;RXR{A,B,G}:0.494051962427;NANOG:0.472090477462;FOXD3:0.444335739999;IKZF1:0.418305201344;AR:0.412792997283;SRF:0.39734058985;EBF1:0.387872482475;PRRX1,2:0.376286458796;POU3F1..4:0.367606382979;AIRE:0.362999119505;RREB1:0.354093319281;FOXL1:0.349773236668;HOXA9_MEIS1:0.345734315383;SOX17:0.329432816282;NFY{A,B,C}:0.325308131363;LMO2:0.305908467105;TLX1..3_NFIC{dimer}:0.278491459624;TFAP4:0.277444995441;ZNF238:0.274386036901;HNF4A_NR2F1,2:0.234844586619;TFCP2:0.230939101443;ZBTB6:0.225768951225;TFAP2{A,C}:0.221235518078;TFDP1:0.196955087146;TEAD1:0.195937456668;ESRRA:0.191544333606;VSX1,2:0.18643241792;MYB:0.181086451844;TBX4,5:0.173800347709;MEF2{A,B,C,D}:0.163451998792;ZNF423:0.158808064829;POU5F1:0.146334072343;UFEwm:0.143048363967;GLI1..3:0.134869241165;NFE2L2:0.114983936659;XCPE1{core}:0.111594260411;PDX1:0.108820866194;BACH2:0.105127176016;RORA:0.103267325761;TBP:0.099837553802;ATF6:0.0960428276663;MYOD1:0.0948730468207;OCT4_SOX2{dimer}:0.0856673683432;LHX3,4:0.0835232243026;SOX{8,9,10}:0.0731012228916;NR1H4:0.069083124427;POU1F1:0.0658624128706;HIC1:0.0616768179589;DBP:0.0573840211018;TP53:0.0493261621722;HLF:0.045790904708;FOS_FOS{B,L1}_JUN{B,D}:0.0233013315609;EVI1:0.0167643483079;NFE2:0.0150599122563;YY1:0.00508877752231;MTF1:0.00259939043368;GATA6:0.00174036793197;REST:0.00143167842561;HNF1A:-3.64726836786e-05;FOSL2:-0.00840922079431;GCM1,2:-0.0131574701717;HMX1:-0.0204146801295;ARID5B:-0.0508761933649;CUX2:-0.0754842998965;RUNX1..3:-0.0854361408022;NKX2-3_NKX2-5:-0.0865822039223;MAFB:-0.108601289913;CRX:-0.112277117885;ALX4:-0.118120912955;PAX1,9:-0.121839158971;FOXP3:-0.129024278831;ZNF148:-0.151462238246;STAT2,4,6:-0.17163262953;bHLH_family:-0.197134787831;RFX1:-0.208805340396;ADNP_IRX_SIX_ZHX:-0.216352789852;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.23028120921;MTE{core}:-0.246958192842;NKX2-2,8:-0.25254883743;POU6F1:-0.258911936273;NFKB1_REL_RELA:-0.265477899851;NKX2-1,4:-0.268861950822;TGIF1:-0.278352896493;SOX5:-0.296900904819;TFAP2B:-0.317224942215;JUN:-0.322401869058;ZNF384:-0.323761243978;BREu{core}:-0.323975266764;NRF1:-0.32978888039;PATZ1:-0.335226822391;PITX1..3:-0.337978652066;PAX4:-0.346449346497;FOXQ1:-0.353680172472;ZNF143:-0.358250314938;GTF2I:-0.375167126805;EGR1..3:-0.376639835019;AHR_ARNT_ARNT2:-0.383087326534;HOX{A4,D4}:-0.423628101943;ALX1:-0.429394749905;PRDM1:-0.455579930094;SNAI1..3:-0.501306807579;SPIB:-0.509529568792;MED-1{core}:-0.526065166295;HSF1,2:-0.532247516822;NKX6-1,2:-0.536936815502;ETS1,2:-0.553774188771;FOX{F1,F2,J1}:-0.560065722903;NHLH1,2:-0.570295610313;DMAP1_NCOR{1,2}_SMARC:-0.572389324535;NFIX:-0.577248564065;CREB1:-0.580328862043;MYBL2:-0.582832276649;CEBPA,B_DDIT3:-0.586540492481;HAND1,2:-0.605291331608;NANOG{mouse}:-0.608891223239;TEF:-0.615473454046;NFATC1..3:-0.626467335358;GATA4:-0.634191714886;ZFP161:-0.638474361326;ATF5_CREB3:-0.642056781487;MYFfamily:-0.646733122215;SPI1:-0.653498384576;ELF1,2,4:-0.658497012429;HBP1_HMGB_SSRP1_UBTF:-0.680050196824;ELK1,4_GABP{A,B1}:-0.680103759554;FOXM1:-0.688781643745;IKZF2:-0.690070673223;NKX3-2:-0.698645470134;CDC5L:-0.704104094159;MZF1:-0.704440472639;XBP1:-0.734959480124;CDX1,2,4:-0.768298732161;PAX6:-0.77763839738;FOXA2:-0.784889091902;T:-0.797887871622;SP1:-0.830126046063;FOX{I1,J2}:-0.835001591394;ZEB1:-0.841872608179;NFIL3:-0.84872339103;PAX5:-0.851646247482;FOXP1:-0.869160949683;ZBTB16:-0.87781209132;RBPJ:-0.881425808725;IRF7:-0.883005778547;NKX3-1:-0.91300655423;SOX2:-0.930462975054;MAZ:-0.97982841445;SMAD1..7,9:-0.986123197971;PAX2:-0.999475362089;ATF2:-1.01075294878;RFX2..5_RFXANK_RFXAP:-1.15406113504;IRF1,2:-1.17488691747;HMGA1,2:-1.19527919882;ATF4:-1.22126821121;HIF1A:-1.29288907352;EP300:-1.33440996911;BPTF:-1.50356288143;SREBF1,2:-1.56600509311;FOX{D1,D2}:-1.58615920476;TLX2:-1.7311010613;FOXO1,3,4:-1.87564486704;STAT1,3:-1.88332303363;FOXN1:-2.05750397403
 
|top_motifs=PBX1:1.64580801491;GZF1:1.27413080254;HOX{A5,B5}:1.21338508684;NR3C1:1.17443205097;NR5A1,2:1.04595257148;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.01504740023;HES1:1.00553307235;GFI1:0.962438142366;LEF1_TCF7_TCF7L1,2:0.919576398529;POU2F1..3:0.903700605464;NR6A1:0.834369360824;GTF2A1,2:0.821993479463;ONECUT1,2:0.737785482418;TOPORS:0.733832068985;RXRA_VDR{dimer}:0.71787991318;ESR1:0.705908852782;EN1,2:0.696135656641;GFI1B:0.684810325489;SPZ1:0.675619727113;E2F1..5:0.654628775575;TAL1_TCF{3,4,12}:0.651749397411;NFE2L1:0.61894635739;PAX3,7:0.582304201164;PPARG:0.580091695489;HOX{A6,A7,B6,B7}:0.579357272614;ZIC1..3:0.558784042379;KLF4:0.546205530723;STAT5{A,B}:0.501267129103;PAX8:0.494749333704;RXR{A,B,G}:0.494051962427;NANOG:0.472090477462;FOXD3:0.444335739999;IKZF1:0.418305201344;AR:0.412792997283;SRF:0.39734058985;EBF1:0.387872482475;PRRX1,2:0.376286458796;POU3F1..4:0.367606382979;AIRE:0.362999119505;RREB1:0.354093319281;FOXL1:0.349773236668;HOXA9_MEIS1:0.345734315383;SOX17:0.329432816282;NFY{A,B,C}:0.325308131363;LMO2:0.305908467105;TLX1..3_NFIC{dimer}:0.278491459624;TFAP4:0.277444995441;ZNF238:0.274386036901;HNF4A_NR2F1,2:0.234844586619;TFCP2:0.230939101443;ZBTB6:0.225768951225;TFAP2{A,C}:0.221235518078;TFDP1:0.196955087146;TEAD1:0.195937456668;ESRRA:0.191544333606;VSX1,2:0.18643241792;MYB:0.181086451844;TBX4,5:0.173800347709;MEF2{A,B,C,D}:0.163451998792;ZNF423:0.158808064829;POU5F1:0.146334072343;UFEwm:0.143048363967;GLI1..3:0.134869241165;NFE2L2:0.114983936659;XCPE1{core}:0.111594260411;PDX1:0.108820866194;BACH2:0.105127176016;RORA:0.103267325761;TBP:0.099837553802;ATF6:0.0960428276663;MYOD1:0.0948730468207;OCT4_SOX2{dimer}:0.0856673683432;LHX3,4:0.0835232243026;SOX{8,9,10}:0.0731012228916;NR1H4:0.069083124427;POU1F1:0.0658624128706;HIC1:0.0616768179589;DBP:0.0573840211018;TP53:0.0493261621722;HLF:0.045790904708;FOS_FOS{B,L1}_JUN{B,D}:0.0233013315609;EVI1:0.0167643483079;NFE2:0.0150599122563;YY1:0.00508877752231;MTF1:0.00259939043368;GATA6:0.00174036793197;REST:0.00143167842561;HNF1A:-3.64726836786e-05;FOSL2:-0.00840922079431;GCM1,2:-0.0131574701717;HMX1:-0.0204146801295;ARID5B:-0.0508761933649;CUX2:-0.0754842998965;RUNX1..3:-0.0854361408022;NKX2-3_NKX2-5:-0.0865822039223;MAFB:-0.108601289913;CRX:-0.112277117885;ALX4:-0.118120912955;PAX1,9:-0.121839158971;FOXP3:-0.129024278831;ZNF148:-0.151462238246;STAT2,4,6:-0.17163262953;bHLH_family:-0.197134787831;RFX1:-0.208805340396;ADNP_IRX_SIX_ZHX:-0.216352789852;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.23028120921;MTE{core}:-0.246958192842;NKX2-2,8:-0.25254883743;POU6F1:-0.258911936273;NFKB1_REL_RELA:-0.265477899851;NKX2-1,4:-0.268861950822;TGIF1:-0.278352896493;SOX5:-0.296900904819;TFAP2B:-0.317224942215;JUN:-0.322401869058;ZNF384:-0.323761243978;BREu{core}:-0.323975266764;NRF1:-0.32978888039;PATZ1:-0.335226822391;PITX1..3:-0.337978652066;PAX4:-0.346449346497;FOXQ1:-0.353680172472;ZNF143:-0.358250314938;GTF2I:-0.375167126805;EGR1..3:-0.376639835019;AHR_ARNT_ARNT2:-0.383087326534;HOX{A4,D4}:-0.423628101943;ALX1:-0.429394749905;PRDM1:-0.455579930094;SNAI1..3:-0.501306807579;SPIB:-0.509529568792;MED-1{core}:-0.526065166295;HSF1,2:-0.532247516822;NKX6-1,2:-0.536936815502;ETS1,2:-0.553774188771;FOX{F1,F2,J1}:-0.560065722903;NHLH1,2:-0.570295610313;DMAP1_NCOR{1,2}_SMARC:-0.572389324535;NFIX:-0.577248564065;CREB1:-0.580328862043;MYBL2:-0.582832276649;CEBPA,B_DDIT3:-0.586540492481;HAND1,2:-0.605291331608;NANOG{mouse}:-0.608891223239;TEF:-0.615473454046;NFATC1..3:-0.626467335358;GATA4:-0.634191714886;ZFP161:-0.638474361326;ATF5_CREB3:-0.642056781487;MYFfamily:-0.646733122215;SPI1:-0.653498384576;ELF1,2,4:-0.658497012429;HBP1_HMGB_SSRP1_UBTF:-0.680050196824;ELK1,4_GABP{A,B1}:-0.680103759554;FOXM1:-0.688781643745;IKZF2:-0.690070673223;NKX3-2:-0.698645470134;CDC5L:-0.704104094159;MZF1:-0.704440472639;XBP1:-0.734959480124;CDX1,2,4:-0.768298732161;PAX6:-0.77763839738;FOXA2:-0.784889091902;T:-0.797887871622;SP1:-0.830126046063;FOX{I1,J2}:-0.835001591394;ZEB1:-0.841872608179;NFIL3:-0.84872339103;PAX5:-0.851646247482;FOXP1:-0.869160949683;ZBTB16:-0.87781209132;RBPJ:-0.881425808725;IRF7:-0.883005778547;NKX3-1:-0.91300655423;SOX2:-0.930462975054;MAZ:-0.97982841445;SMAD1..7,9:-0.986123197971;PAX2:-0.999475362089;ATF2:-1.01075294878;RFX2..5_RFXANK_RFXAP:-1.15406113504;IRF1,2:-1.17488691747;HMGA1,2:-1.19527919882;ATF4:-1.22126821121;HIF1A:-1.29288907352;EP300:-1.33440996911;BPTF:-1.50356288143;SREBF1,2:-1.56600509311;FOX{D1,D2}:-1.58615920476;TLX2:-1.7311010613;FOXO1,3,4:-1.87564486704;STAT1,3:-1.88332303363;FOXN1:-2.05750397403
 
|xref=
 
|xref=
 +
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11616-122A5;search_select_hide=table117:FF:11616-122A5
 
}}
 
}}

Latest revision as of 09:12, 4 June 2020

Name:Mesenchymal Stem Cells - bone marrow, donor2
Species:Human (Homo sapiens)
Library ID:CNhs12100
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebone marrow
dev stageNA
sexNA
ageNA
cell typemesenchymal stem cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC7505
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005989
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12100 CAGE DRX008352 DRR009224
Accession ID Hg19

Library idBAMCTSS
CNhs12100 DRZ000649 DRZ002034
Accession ID Hg38

Library idBAMCTSS
CNhs12100 DRZ011999 DRZ013384
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis--0.0244
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.152
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural--0.0955
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19--0.425
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle--0.166
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.292
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.198
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.782
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory--0.0129
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth--0.0139
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.698
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.384
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.384
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.584
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs12100

Jaspar motif P-value
MA0002.2 0.243
MA0003.1 0.344
MA0004.1 0.586
MA0006.1 0.657
MA0007.1 0.00238
MA0009.1 0.0638
MA0014.1 0.9
MA0017.1 0.117
MA0018.2 0.00293
MA0019.1 0.774
MA0024.1 0.705
MA0025.1 0.114
MA0027.1 0.281
MA0028.1 0.421
MA0029.1 0.0394
MA0030.1 1.60618e-5
MA0031.1 8.99065e-6
MA0035.2 0.409
MA0038.1 0.0399
MA0039.2 0.787
MA0040.1 0.16
MA0041.1 0.494
MA0042.1 0.533
MA0043.1 4.08483e-5
MA0046.1 0.106
MA0047.2 0.183
MA0048.1 0.187
MA0050.1 1.61196e-11
MA0051.1 4.82727e-7
MA0052.1 0.0158
MA0055.1 0.11
MA0057.1 0.372
MA0058.1 0.848
MA0059.1 0.096
MA0060.1 0.00214
MA0061.1 0.339
MA0062.2 0.0177
MA0065.2 0.0672
MA0066.1 0.0212
MA0067.1 0.0398
MA0068.1 9.37233e-4
MA0069.1 0.811
MA0070.1 0.0455
MA0071.1 0.0353
MA0072.1 0.105
MA0073.1 0.772
MA0074.1 0.71
MA0076.1 0.0491
MA0077.1 0.762
MA0078.1 0.415
MA0079.2 0.181
MA0080.2 3.05086e-6
MA0081.1 0.0469
MA0083.1 0.0041
MA0084.1 0.439
MA0087.1 0.474
MA0088.1 0.181
MA0090.1 0.194
MA0091.1 0.234
MA0092.1 0.333
MA0093.1 0.761
MA0099.2 0.00174
MA0100.1 0.893
MA0101.1 0.74
MA0102.2 3.80166e-4
MA0103.1 0.441
MA0104.2 0.379
MA0105.1 0.0191
MA0106.1 0.0834
MA0107.1 0.785
MA0108.2 0.00313
MA0111.1 0.703
MA0112.2 5.16574e-4
MA0113.1 0.0135
MA0114.1 0.0554
MA0115.1 0.889
MA0116.1 0.0233
MA0117.1 0.921
MA0119.1 0.0223
MA0122.1 0.505
MA0124.1 0.498
MA0125.1 0.131
MA0131.1 0.566
MA0135.1 0.0362
MA0136.1 1.1045e-5
MA0137.2 9.61317e-4
MA0138.2 0.0724
MA0139.1 0.585
MA0140.1 0.158
MA0141.1 0.00921
MA0142.1 0.401
MA0143.1 0.898
MA0144.1 0.307
MA0145.1 0.527
MA0146.1 0.0407
MA0147.1 0.153
MA0148.1 0.799
MA0149.1 0.0464
MA0150.1 0.734
MA0152.1 0.437
MA0153.1 0.812
MA0154.1 0.115
MA0155.1 0.149
MA0156.1 0.00238
MA0157.1 0.0864
MA0159.1 0.404
MA0160.1 0.0366
MA0162.1 0.237
MA0163.1 0.00126
MA0164.1 0.659
MA0258.1 0.0172
MA0259.1 0.511



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs12100

Novel motif P-value
1 0.133
10 0.358
100 0.395
101 0.536
102 0.548
103 0.264
104 0.401
105 0.123
106 0.111
107 0.125
108 0.537
109 0.0284
11 0.0119
110 0.0609
111 0.12
112 0.252
113 0.569
114 0.243
115 0.976
116 0.135
117 0.404
118 0.39
119 0.257
12 0.916
120 0.0783
121 0.963
122 0.999
123 0.915
124 0.672
125 0.139
126 0.58
127 0.0661
128 0.21
129 0.586
13 0.32
130 0.768
131 0.621
132 0.338
133 0.449
134 0.831
135 0.583
136 0.646
137 0.197
138 0.203
139 0.374
14 0.982
140 0.335
141 0.293
142 0.272
143 0.0807
144 0.759
145 0.098
146 0.662
147 0.438
148 0.818
149 0.189
15 0.165
150 0.35
151 0.454
152 0.206
153 0.916
154 0.746
155 0.749
156 0.236
157 0.753
158 0.912
159 0.715
16 0.23
160 0.0026
161 0.938
162 0.311
163 0.396
164 0.66
165 0.717
166 0.731
167 0.538
168 0.796
169 0.0401
17 0.18
18 0.0801
19 0.111
2 0.673
20 0.898
21 0.514
22 0.161
23 0.247
24 0.819
25 0.79
26 0.0112
27 0.258
28 0.481
29 0.217
3 0.226
30 0.578
31 0.427
32 4.8488e-4
33 0.239
34 0.678
35 0.688
36 0.055
37 0.151
38 0.232
39 0.542
4 0.409
40 0.0176
41 0.757
42 0.488
43 0.142
44 0.377
45 0.6
46 0.0103
47 0.11
48 0.1
49 0.0902
5 0.589
50 0.596
51 0.326
52 0.899
53 0.993
54 0.339
55 0.343
56 0.252
57 0.0675
58 0.898
59 0.0451
6 0.946
60 0.582
61 0.573
62 0.406
63 0.165
64 0.101
65 0.0554
66 0.0483
67 0.888
68 0.377
69 0.00779
7 0.578
70 0.342
71 0.0534
72 0.745
73 0.0915
74 0.869
75 0.256
76 0.872
77 0.183
78 0.334
79 0.143
8 0.00854
80 0.847
81 0.335
82 0.191
83 0.502
84 0.37
85 0.228
86 0.845
87 0.503
88 0.377
89 0.113
9 0.443
90 0.702
91 0.329
92 0.275
93 0.211
94 0.0876
95 0.0823
96 0.28
97 0.746
98 0.093
99 0.00863



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs12100


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002092 (bone marrow cell)
0002540 (mesenchymal stem cell of the bone marrow)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002371 (bone marrow)
0001474 (bone element)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000097 (human mesenchymal stem cell of bone marrow sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

CL:0000134 (mesenchymal cell)