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{{f5samples
 
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001062,UBERON:0001434,UBERON:0001474,UBERON:0002050,UBERON:0002193,UBERON:0002204,UBERON:0002371,UBERON:0002384,UBERON:0002390,UBERON:0002405,UBERON:0002532,UBERON:0004120,UBERON:0004765,UBERON:0005423
+
|DRA_sample_Accession=CAGE@SAMD00005989
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002092,CL:0002320,CL:0002371,CL:0002540
+
|accession_numbers=CAGE;DRX008352;DRR009224;DRZ000649;DRZ002034;DRZ011999;DRZ013384
 +
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405
 +
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002092,CL:0002540
 
|ancestors_in_disease_facet=
 
|ancestors_in_disease_facet=
 +
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000097
 
|comment=
 
|comment=
 
|created_by=
 
|created_by=
 
|creation_date=
 
|creation_date=
 +
|data_phase=2
 +
|datafreeze_phase=2
 
|def=
 
|def=
|
+
|expression_enrichment_score=
 
|fonse_cell_line=
 
|fonse_cell_line=
 
|fonse_cell_line_closure=
 
|fonse_cell_line_closure=
Line 35: Line 42:
 
|fonse_treatment_closure=
 
|fonse_treatment_closure=
 
|has_quality=
 
|has_quality=
 +
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor2.CNhs12100.11616-122A5.hg19.nobarcode.bam
 +
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor2.CNhs12100.11616-122A5.hg19.ctss.bed.gz
 +
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor2.CNhs12100.11616-122A5.hg19.nobarcode.rdna.fa.gz
 +
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor2.CNhs12100.11616-122A5.hg38.nobarcode.bam
 +
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor2.CNhs12100.11616-122A5.hg38.nobarcode.ctss.bed.gz
 
|id=FF:11616-122A5
 
|id=FF:11616-122A5
|is_a=EFO:0002091;;FF:0000002;;FF:0000097;;FF:0000210
+
|is_a=EFO:0002091;;FF:0000097
 +
|is_obsolete=
 +
|library_id=CNhs12100
 +
|library_id_phase_based=2:CNhs12100
 +
|microRNAs=
 +
|microRNAs_nn=
 +
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11616
 +
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11616
 
|name=Mesenchymal Stem Cells - bone marrow, donor2
 
|name=Mesenchymal Stem Cells - bone marrow, donor2
 
|namespace=FANTOM5
 
|namespace=FANTOM5
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|profile_cagescan=,,,
 
|profile_cagescan=,,,
 
|profile_hcage=CNhs12100,LSID839,release011,COMPLETED
 
|profile_hcage=CNhs12100,LSID839,release011,COMPLETED
|profile_rnaseq=,,,
+
|profile_rnaseq=
 
|profile_srnaseq=SRhi10005,,,
 
|profile_srnaseq=SRhi10005,,,
 +
|refex=http://refex.dbcls.jp/genelist.php?lang
 +
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,0.306627702144999,0.236895379477808,0,0,0,0,0,0,0,0,0,0,0,0,0,0.430666823990085,0,0,0,0,0,0.285586636811896,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.0655904722138066,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.720611888629525,0,0,0,0.286552171837349,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0202262068567818,0,0,0,0,0,0,0,0,0,0,-0.0584468268118252,0.149108541618894,0,0,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0.383544533079954,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.162481025649352,0.127100842454776,0,0,0,0,0,0
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|rna_box=122
 
|rna_box=122
 
|rna_catalog_number=SC7505
 
|rna_catalog_number=SC7505
Line 57: Line 79:
 
|rna_weight_ug=10
 
|rna_weight_ug=10
 
|sample_age=
 
|sample_age=
 +
|sample_category=primary cells
 
|sample_cell_catalog=N/A
 
|sample_cell_catalog=N/A
 
|sample_cell_line=
 
|sample_cell_line=
Line 69: Line 92:
 
|sample_ethnicity=
 
|sample_ethnicity=
 
|sample_experimental_condition=
 
|sample_experimental_condition=
 +
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.53213633808354e-218!GO:0005737;cytoplasm;1.24749296748163e-186!GO:0043226;organelle;2.53100185925544e-178!GO:0043229;intracellular organelle;4.09244876079475e-178!GO:0043231;intracellular membrane-bound organelle;2.38626416239669e-175!GO:0043227;membrane-bound organelle;6.11341491746811e-175!GO:0044422;organelle part;1.94975591627397e-158!GO:0044446;intracellular organelle part;2.56890349565497e-157!GO:0044444;cytoplasmic part;3.52546091847737e-142!GO:0032991;macromolecular complex;8.92154786038341e-103!GO:0030529;ribonucleoprotein complex;2.73606126101152e-88!GO:0044237;cellular metabolic process;2.73299906506881e-84!GO:0044238;primary metabolic process;4.68844650367327e-83!GO:0005739;mitochondrion;7.20321531676914e-83!GO:0043233;organelle lumen;7.84409760497318e-75!GO:0031974;membrane-enclosed lumen;7.84409760497318e-75!GO:0043170;macromolecule metabolic process;3.62576182695809e-71!GO:0044428;nuclear part;2.85608264141174e-70!GO:0005515;protein binding;4.06518296673756e-66!GO:0003723;RNA binding;1.23782144726819e-62!GO:0005634;nucleus;4.68086079527e-59!GO:0005840;ribosome;6.03584660899026e-58!GO:0031090;organelle membrane;9.43933751743829e-56!GO:0044429;mitochondrial part;1.19879024169061e-55!GO:0003735;structural constituent of ribosome;3.06830997744137e-52!GO:0043234;protein complex;5.55863037569037e-52!GO:0009058;biosynthetic process;5.45098169690287e-51!GO:0006412;translation;7.88850830201095e-51!GO:0019538;protein metabolic process;5.09282986002834e-48!GO:0044249;cellular biosynthetic process;2.48295809476852e-47!GO:0031967;organelle envelope;2.61039109487605e-46!GO:0031975;envelope;6.09274398439181e-46!GO:0006396;RNA processing;2.42558114245965e-44!GO:0033279;ribosomal subunit;8.17320235092058e-44!GO:0016043;cellular component organization and biogenesis;1.85907049157641e-43!GO:0044260;cellular macromolecule metabolic process;4.85743779255833e-43!GO:0009059;macromolecule biosynthetic process;6.43904941168682e-43!GO:0044267;cellular protein metabolic process;3.99211737283444e-42!GO:0031981;nuclear lumen;8.56131354102376e-42!GO:0043228;non-membrane-bound organelle;1.69713777262854e-38!GO:0043232;intracellular non-membrane-bound organelle;1.69713777262854e-38!GO:0005829;cytosol;2.19681003526475e-36!GO:0005740;mitochondrial envelope;2.64814086239396e-36!GO:0043283;biopolymer metabolic process;1.71862123878672e-34!GO:0031966;mitochondrial membrane;4.32751169071975e-34!GO:0006996;organelle organization and biogenesis;5.14111643045019e-34!GO:0033036;macromolecule localization;7.36291639472682e-34!GO:0015031;protein transport;8.10218549736921e-34!GO:0006259;DNA metabolic process;1.87294037649004e-33!GO:0019866;organelle inner membrane;2.6711516738838e-33!GO:0016071;mRNA metabolic process;7.84641953140967e-33!GO:0065003;macromolecular complex assembly;2.41536601450376e-32!GO:0005743;mitochondrial inner membrane;1.74853431324781e-31!GO:0008104;protein localization;1.92921621190776e-31!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.41008650003328e-31!GO:0045184;establishment of protein localization;3.91771425666107e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.44766536757583e-31!GO:0046907;intracellular transport;1.80006412637699e-29!GO:0010467;gene expression;3.4727998483807e-29!GO:0008380;RNA splicing;3.69490869441558e-29!GO:0022607;cellular component assembly;9.1796418785302e-29!GO:0006397;mRNA processing;3.11851672323907e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.83803395804186e-27!GO:0006886;intracellular protein transport;1.83752117918961e-25!GO:0007049;cell cycle;2.02055353631524e-25!GO:0005654;nucleoplasm;3.31123784029079e-24!GO:0044445;cytosolic part;3.79860429339462e-24!GO:0015934;large ribosomal subunit;4.68834126563026e-24!GO:0031980;mitochondrial lumen;1.74486158034136e-23!GO:0005759;mitochondrial matrix;1.74486158034136e-23!GO:0044455;mitochondrial membrane part;2.68492853953937e-23!GO:0006119;oxidative phosphorylation;6.40863141723054e-23!GO:0005681;spliceosome;5.37932960942488e-22!GO:0015935;small ribosomal subunit;7.19395157636959e-21!GO:0022402;cell cycle process;1.58717535569853e-20!GO:0012505;endomembrane system;1.61738486743997e-20!GO:0044451;nucleoplasm part;2.49909822618011e-20!GO:0016462;pyrophosphatase activity;9.49271408888945e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.06963564209986e-19!GO:0000278;mitotic cell cycle;1.0700251932865e-19!GO:0005783;endoplasmic reticulum;1.36621776100712e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;1.71389102006701e-19!GO:0005730;nucleolus;3.13242343854076e-19!GO:0051186;cofactor metabolic process;3.54638474804537e-19!GO:0017111;nucleoside-triphosphatase activity;4.98832669258343e-19!GO:0000166;nucleotide binding;5.12072871495016e-19!GO:0006457;protein folding;1.83669431180257e-18!GO:0005746;mitochondrial respiratory chain;2.21946232556733e-18!GO:0051649;establishment of cellular localization;2.32096934629547e-18!GO:0051641;cellular localization;2.39933014500934e-18!GO:0006974;response to DNA damage stimulus;1.08667580261446e-17!GO:0044432;endoplasmic reticulum part;1.13237615006629e-17!GO:0005694;chromosome;1.97528828124857e-17!GO:0016874;ligase activity;2.66535516817422e-17!GO:0048770;pigment granule;5.93905502533335e-17!GO:0042470;melanosome;5.93905502533335e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.31707806293291e-16!GO:0005761;mitochondrial ribosome;1.31707806293291e-16!GO:0000313;organellar ribosome;1.31707806293291e-16!GO:0050136;NADH dehydrogenase (quinone) activity;1.55413421513969e-16!GO:0003954;NADH dehydrogenase activity;1.55413421513969e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.55413421513969e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.65685354515073e-16!GO:0044427;chromosomal part;6.32143660368908e-16!GO:0022403;cell cycle phase;1.14999451332082e-15!GO:0006512;ubiquitin cycle;2.58335672215922e-15!GO:0006281;DNA repair;3.34695359316641e-15!GO:0051276;chromosome organization and biogenesis;6.28852897208426e-15!GO:0022618;protein-RNA complex assembly;1.06228143982311e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.22227181644092e-14!GO:0042773;ATP synthesis coupled electron transport;1.22227181644092e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.26382452782385e-14!GO:0000087;M phase of mitotic cell cycle;1.81959734122805e-14!GO:0007067;mitosis;1.92785363877496e-14!GO:0030964;NADH dehydrogenase complex (quinone);2.01027589242079e-14!GO:0045271;respiratory chain complex I;2.01027589242079e-14!GO:0005747;mitochondrial respiratory chain complex I;2.01027589242079e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.48110694422133e-14!GO:0006732;coenzyme metabolic process;5.14251911494e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.59603169423146e-14!GO:0009719;response to endogenous stimulus;7.03666827237872e-14!GO:0006605;protein targeting;9.15787406394925e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;1.27863215583006e-13!GO:0006260;DNA replication;2.01316023023772e-13!GO:0005794;Golgi apparatus;2.27631489454124e-13!GO:0044265;cellular macromolecule catabolic process;3.38407298789215e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.41647420487404e-13!GO:0051082;unfolded protein binding;6.8330271934618e-13!GO:0017076;purine nucleotide binding;7.01347856160822e-13!GO:0003676;nucleic acid binding;7.0225204212869e-13!GO:0006323;DNA packaging;7.13475835550713e-13!GO:0032553;ribonucleotide binding;1.04503653374784e-12!GO:0032555;purine ribonucleotide binding;1.04503653374784e-12!GO:0005789;endoplasmic reticulum membrane;1.06852779433673e-12!GO:0008134;transcription factor binding;1.20004159384398e-12!GO:0042254;ribosome biogenesis and assembly;1.24068785698633e-12!GO:0000502;proteasome complex (sensu Eukaryota);1.24866079766659e-12!GO:0044248;cellular catabolic process;1.27047295404076e-12!GO:0009055;electron carrier activity;1.49832656306795e-12!GO:0000279;M phase;2.75313079464149e-12!GO:0009057;macromolecule catabolic process;3.71732686750732e-12!GO:0005524;ATP binding;5.41217258168175e-12!GO:0043412;biopolymer modification;5.75151895530712e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;5.77937514185993e-12!GO:0000375;RNA splicing, via transesterification reactions;5.77937514185993e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.77937514185993e-12!GO:0043285;biopolymer catabolic process;6.37903634186999e-12!GO:0065004;protein-DNA complex assembly;6.90949004909723e-12!GO:0030554;adenyl nucleotide binding;7.94637185065848e-12!GO:0032559;adenyl ribonucleotide binding;8.0984675690491e-12!GO:0042623;ATPase activity, coupled;8.5634121878857e-12!GO:0016887;ATPase activity;1.034247498629e-11!GO:0006333;chromatin assembly or disassembly;1.23359606827104e-11!GO:0008135;translation factor activity, nucleic acid binding;1.58721623983158e-11!GO:0006399;tRNA metabolic process;1.66741362925467e-11!GO:0012501;programmed cell death;2.5368379625457e-11!GO:0051726;regulation of cell cycle;2.91127803722463e-11!GO:0000074;regulation of progression through cell cycle;3.6693096558204e-11!GO:0048193;Golgi vesicle transport;5.00638198136029e-11!GO:0005635;nuclear envelope;6.74818687080204e-11!GO:0006915;apoptosis;6.92584708430018e-11!GO:0000785;chromatin;6.98198727070844e-11!GO:0006334;nucleosome assembly;8.85731592153593e-11!GO:0051301;cell division;1.02556288278055e-10!GO:0031965;nuclear membrane;1.04167480657326e-10!GO:0044453;nuclear membrane part;1.16765753317342e-10!GO:0006464;protein modification process;1.20151985743114e-10!GO:0009259;ribonucleotide metabolic process;1.30761997652979e-10!GO:0006163;purine nucleotide metabolic process;1.48097103492337e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;1.66724446451046e-10!GO:0019941;modification-dependent protein catabolic process;2.23904816950309e-10!GO:0043632;modification-dependent macromolecule catabolic process;2.23904816950309e-10!GO:0006511;ubiquitin-dependent protein catabolic process;2.56313494333519e-10!GO:0051188;cofactor biosynthetic process;3.3679508554269e-10!GO:0044257;cellular protein catabolic process;3.48664294477831e-10!GO:0008219;cell death;3.51813685387087e-10!GO:0016265;death;3.51813685387087e-10!GO:0016491;oxidoreductase activity;3.86468727465793e-10!GO:0009150;purine ribonucleotide metabolic process;4.6205055867459e-10!GO:0005793;ER-Golgi intermediate compartment;4.99449470843124e-10!GO:0031497;chromatin assembly;5.20401721012066e-10!GO:0030532;small nuclear ribonucleoprotein complex;9.04964995912573e-10!GO:0006164;purine nucleotide biosynthetic process;9.04964995912573e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.04929269967374e-09!GO:0065002;intracellular protein transport across a membrane;1.2317255480102e-09!GO:0003743;translation initiation factor activity;1.2317255480102e-09!GO:0009260;ribonucleotide biosynthetic process;1.65155968951419e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.63006584377813e-09!GO:0009152;purine ribonucleotide biosynthetic process;2.87030269060411e-09!GO:0006913;nucleocytoplasmic transport;2.90511468419671e-09!GO:0008639;small protein conjugating enzyme activity;3.13224048759489e-09!GO:0016604;nuclear body;3.65789596862033e-09!GO:0009141;nucleoside triphosphate metabolic process;4.51450016563879e-09!GO:0009199;ribonucleoside triphosphate metabolic process;4.51450016563879e-09!GO:0030163;protein catabolic process;4.52489793933349e-09!GO:0016070;RNA metabolic process;4.70309206040586e-09!GO:0006364;rRNA processing;5.60952336484435e-09!GO:0006413;translational initiation;5.68221067067887e-09!GO:0051169;nuclear transport;6.10771718188075e-09!GO:0006461;protein complex assembly;7.53394973749531e-09!GO:0004842;ubiquitin-protein ligase activity;8.50538686050107e-09!GO:0043687;post-translational protein modification;8.78045394643724e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;9.37555649921037e-09!GO:0005643;nuclear pore;9.42141822309276e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.01420095491389e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.01420095491389e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.05443063413859e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.05443063413859e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.05443063413859e-08!GO:0008565;protein transporter activity;1.06235804053446e-08!GO:0006091;generation of precursor metabolites and energy;1.41454934716912e-08!GO:0003712;transcription cofactor activity;1.69979315475481e-08!GO:0007005;mitochondrion organization and biogenesis;1.83168551637432e-08!GO:0016072;rRNA metabolic process;1.99402489318157e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.02268822417252e-08!GO:0015078;hydrogen ion transmembrane transporter activity;2.18850059869954e-08!GO:0019787;small conjugating protein ligase activity;2.19013827533192e-08!GO:0015630;microtubule cytoskeleton;2.3483856209078e-08!GO:0016740;transferase activity;2.63216165820315e-08!GO:0009117;nucleotide metabolic process;2.89533741262756e-08!GO:0017038;protein import;3.0412670682226e-08!GO:0016192;vesicle-mediated transport;3.36075264348549e-08!GO:0043038;amino acid activation;3.89023826923587e-08!GO:0006418;tRNA aminoacylation for protein translation;3.89023826923587e-08!GO:0043039;tRNA aminoacylation;3.89023826923587e-08!GO:0009142;nucleoside triphosphate biosynthetic process;4.24508879569184e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.24508879569184e-08!GO:0019829;cation-transporting ATPase activity;4.40013753163176e-08!GO:0006446;regulation of translational initiation;5.20263742353704e-08!GO:0015986;ATP synthesis coupled proton transport;5.76536122078915e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.76536122078915e-08!GO:0046034;ATP metabolic process;6.32447544677193e-08!GO:0046930;pore complex;8.30432389526411e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.82728916943767e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.82728916943767e-08!GO:0016779;nucleotidyltransferase activity;1.3073307857428e-07!GO:0009060;aerobic respiration;1.40210704642709e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.79171749442711e-07!GO:0005768;endosome;1.84725446139568e-07!GO:0009056;catabolic process;1.87369660066556e-07!GO:0009108;coenzyme biosynthetic process;2.10155684958761e-07!GO:0030120;vesicle coat;2.66585895779867e-07!GO:0030662;coated vesicle membrane;2.66585895779867e-07!GO:0016787;hydrolase activity;3.07972718249541e-07!GO:0003697;single-stranded DNA binding;4.28753814959189e-07!GO:0016881;acid-amino acid ligase activity;4.76129334773188e-07!GO:0006754;ATP biosynthetic process;5.81275993687317e-07!GO:0006753;nucleoside phosphate metabolic process;5.81275993687317e-07!GO:0045333;cellular respiration;5.81275993687317e-07!GO:0005788;endoplasmic reticulum lumen;6.66914488783361e-07!GO:0004386;helicase activity;6.83746487531431e-07!GO:0003899;DNA-directed RNA polymerase activity;7.02192189453065e-07!GO:0016568;chromatin modification;7.62507424973052e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;7.66333576329267e-07!GO:0005762;mitochondrial large ribosomal subunit;7.68917902537034e-07!GO:0000315;organellar large ribosomal subunit;7.68917902537034e-07!GO:0043067;regulation of programmed cell death;7.68917902537034e-07!GO:0042981;regulation of apoptosis;7.95627085242436e-07!GO:0048523;negative regulation of cellular process;8.01899564108102e-07!GO:0005667;transcription factor complex;8.17388001203916e-07!GO:0006366;transcription from RNA polymerase II promoter;8.98453673209138e-07!GO:0045259;proton-transporting ATP synthase complex;1.07625368547616e-06!GO:0008026;ATP-dependent helicase activity;1.23741675862792e-06!GO:0051329;interphase of mitotic cell cycle;1.32761240420973e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.55176380434127e-06!GO:0048475;coated membrane;1.59016929469565e-06!GO:0030117;membrane coat;1.59016929469565e-06!GO:0005813;centrosome;1.62860046837704e-06!GO:0000786;nucleosome;1.90696763785424e-06!GO:0016607;nuclear speck;1.96007514362834e-06!GO:0006752;group transfer coenzyme metabolic process;2.09853469847355e-06!GO:0006261;DNA-dependent DNA replication;2.27957375096711e-06!GO:0008654;phospholipid biosynthetic process;2.46055146278379e-06!GO:0051325;interphase;2.66743382286582e-06!GO:0006099;tricarboxylic acid cycle;2.86879084091217e-06!GO:0046356;acetyl-CoA catabolic process;2.86879084091217e-06!GO:0006084;acetyl-CoA metabolic process;3.39045117207698e-06!GO:0050657;nucleic acid transport;3.93196943229987e-06!GO:0051236;establishment of RNA localization;3.93196943229987e-06!GO:0050658;RNA transport;3.93196943229987e-06!GO:0051246;regulation of protein metabolic process;3.94093859582687e-06!GO:0051187;cofactor catabolic process;3.95067913000292e-06!GO:0005815;microtubule organizing center;3.96197303701479e-06!GO:0006403;RNA localization;4.00846960044117e-06!GO:0044431;Golgi apparatus part;4.28731539066322e-06!GO:0016853;isomerase activity;5.20686768993429e-06!GO:0032446;protein modification by small protein conjugation;5.66617641462647e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.31406995483895e-06!GO:0016567;protein ubiquitination;8.21632077244783e-06!GO:0009109;coenzyme catabolic process;8.77045172547078e-06!GO:0005819;spindle;9.28049382308334e-06!GO:0045454;cell redox homeostasis;1.07428940399306e-05!GO:0043623;cellular protein complex assembly;1.26731021580968e-05!GO:0044440;endosomal part;1.50529250513601e-05!GO:0010008;endosome membrane;1.50529250513601e-05!GO:0005770;late endosome;1.51896356670773e-05!GO:0043566;structure-specific DNA binding;1.71622579305106e-05!GO:0048519;negative regulation of biological process;1.72091383551517e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.767330672137e-05!GO:0005798;Golgi-associated vesicle;2.25069718114908e-05!GO:0000245;spliceosome assembly;2.40299875223761e-05!GO:0003924;GTPase activity;2.5570714954588e-05!GO:0019867;outer membrane;2.75586307801342e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;3.0028338112908e-05!GO:0015399;primary active transmembrane transporter activity;3.0028338112908e-05!GO:0003714;transcription corepressor activity;4.15128248679498e-05!GO:0031968;organelle outer membrane;4.20079373444254e-05!GO:0000151;ubiquitin ligase complex;4.52254391488979e-05!GO:0031324;negative regulation of cellular metabolic process;4.93496513830688e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;5.19844581212025e-05!GO:0051028;mRNA transport;5.36010631336921e-05!GO:0045786;negative regulation of progression through cell cycle;6.10064269830512e-05!GO:0006793;phosphorus metabolic process;6.36958531107973e-05!GO:0006796;phosphate metabolic process;6.36958531107973e-05!GO:0015980;energy derivation by oxidation of organic compounds;6.39027603409062e-05!GO:0006082;organic acid metabolic process;6.61133648576185e-05!GO:0000314;organellar small ribosomal subunit;6.61133648576185e-05!GO:0005763;mitochondrial small ribosomal subunit;6.61133648576185e-05!GO:0005839;proteasome core complex (sensu Eukaryota);6.95412157010234e-05!GO:0019752;carboxylic acid metabolic process;7.075388698282e-05!GO:0044262;cellular carbohydrate metabolic process;7.09060747475455e-05!GO:0043681;protein import into mitochondrion;7.24238945663203e-05!GO:0000075;cell cycle checkpoint;7.55575842803865e-05!GO:0006916;anti-apoptosis;8.04601680257672e-05!GO:0008361;regulation of cell size;8.19672174821079e-05!GO:0016049;cell growth;8.20257122635845e-05!GO:0009165;nucleotide biosynthetic process;8.69415644685261e-05!GO:0031252;leading edge;9.09782463401183e-05!GO:0051170;nuclear import;9.27311708503665e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;9.6262132324597e-05!GO:0005048;signal sequence binding;9.76489767487771e-05!GO:0046474;glycerophospholipid biosynthetic process;9.84710599008966e-05!GO:0008033;tRNA processing;9.98683412695473e-05!GO:0005741;mitochondrial outer membrane;0.000101485291623535!GO:0006626;protein targeting to mitochondrion;0.000105205452566548!GO:0008094;DNA-dependent ATPase activity;0.000109154100679823!GO:0001558;regulation of cell growth;0.000114542604081911!GO:0016023;cytoplasmic membrane-bound vesicle;0.000116675534388795!GO:0006606;protein import into nucleus;0.000119434984822076!GO:0000139;Golgi membrane;0.000119566180962347!GO:0005657;replication fork;0.000121466074924377!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000129322352254669!GO:0051789;response to protein stimulus;0.000131914000501764!GO:0006986;response to unfolded protein;0.000131914000501764!GO:0016564;transcription repressor activity;0.000132503267838245!GO:0008610;lipid biosynthetic process;0.000137510807227513!GO:0006839;mitochondrial transport;0.000142316483406473!GO:0030867;rough endoplasmic reticulum membrane;0.000152813772359994!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000170906503976658!GO:0000775;chromosome, pericentric region;0.00018095762489678!GO:0005773;vacuole;0.00018095762489678!GO:0019899;enzyme binding;0.000192055440016998!GO:0031988;membrane-bound vesicle;0.000197188906452808!GO:0051427;hormone receptor binding;0.000197188906452808!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00020449295422468!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000229892328618733!GO:0031410;cytoplasmic vesicle;0.000230134107487845!GO:0043069;negative regulation of programmed cell death;0.000233284881795128!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000245946539390776!GO:0016126;sterol biosynthetic process;0.000261982574132707!GO:0031982;vesicle;0.000270958031286316!GO:0016859;cis-trans isomerase activity;0.000272473298135706!GO:0009892;negative regulation of metabolic process;0.000296461142939177!GO:0043066;negative regulation of apoptosis;0.000339372129153772!GO:0016563;transcription activator activity;0.000341580359535667!GO:0033116;ER-Golgi intermediate compartment membrane;0.000359433375045898!GO:0043021;ribonucleoprotein binding;0.000362483829568469!GO:0005905;coated pit;0.00037983214161645!GO:0003684;damaged DNA binding;0.000391191431786489!GO:0004298;threonine endopeptidase activity;0.000400469883018701!GO:0035257;nuclear hormone receptor binding;0.000403624054935864!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000410370190207856!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000440113284161555!GO:0030176;integral to endoplasmic reticulum membrane;0.000478414531860524!GO:0051252;regulation of RNA metabolic process;0.000490795483382182!GO:0016310;phosphorylation;0.000491625162502045!GO:0043492;ATPase activity, coupled to movement of substances;0.000494777636438114!GO:0019843;rRNA binding;0.000527887000631098!GO:0008250;oligosaccharyl transferase complex;0.000533845940830872!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000534195557863109!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000551563157350044!GO:0007006;mitochondrial membrane organization and biogenesis;0.000552394891000068!GO:0005769;early endosome;0.000590193817468448!GO:0006613;cotranslational protein targeting to membrane;0.00065020875629766!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000696472536178732!GO:0006520;amino acid metabolic process;0.000726554457202276!GO:0051168;nuclear export;0.000735317297007987!GO:0044452;nucleolar part;0.000763538721693615!GO:0006383;transcription from RNA polymerase III promoter;0.000764560791125357!GO:0007051;spindle organization and biogenesis;0.00077402649062414!GO:0005791;rough endoplasmic reticulum;0.000812346108928569!GO:0007088;regulation of mitosis;0.000840854756515888!GO:0006778;porphyrin metabolic process;0.000870357559006386!GO:0033013;tetrapyrrole metabolic process;0.000870357559006386!GO:0000323;lytic vacuole;0.000870357559006386!GO:0005764;lysosome;0.000870357559006386!GO:0003729;mRNA binding;0.000894393696411384!GO:0046489;phosphoinositide biosynthetic process;0.000919211457524198!GO:0042802;identical protein binding;0.000944141566839507!GO:0006818;hydrogen transport;0.000985751624003949!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000988233985177439!GO:0015992;proton transport;0.00102654995117535!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00103472387532988!GO:0000082;G1/S transition of mitotic cell cycle;0.00103945865148072!GO:0006595;polyamine metabolic process;0.00109063546970961!GO:0003713;transcription coactivator activity;0.00111607745724613!GO:0006118;electron transport;0.00113911267458825!GO:0051920;peroxiredoxin activity;0.00117567505151549!GO:0007010;cytoskeleton organization and biogenesis;0.00118613663580367!GO:0043488;regulation of mRNA stability;0.00120440268023233!GO:0043487;regulation of RNA stability;0.00120440268023233!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00123138051284434!GO:0030880;RNA polymerase complex;0.00123138051284434!GO:0005684;U2-dependent spliceosome;0.00123138051284434!GO:0018196;peptidyl-asparagine modification;0.00123138051284434!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00123138051284434!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00123951016246542!GO:0004576;oligosaccharyl transferase activity;0.00126991072356633!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00128775115924194!GO:0015002;heme-copper terminal oxidase activity;0.00128775115924194!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00128775115924194!GO:0004129;cytochrome-c oxidase activity;0.00128775115924194!GO:0043284;biopolymer biosynthetic process;0.00139384809983505!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00147289032688604!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00147289032688604!GO:0003724;RNA helicase activity;0.00153089495435554!GO:0006695;cholesterol biosynthetic process;0.00153089495435554!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00153962964604108!GO:0003678;DNA helicase activity;0.00153972307766715!GO:0048468;cell development;0.001541645071268!GO:0048522;positive regulation of cellular process;0.00155090369131763!GO:0006414;translational elongation;0.00162799745125426!GO:0030133;transport vesicle;0.00167757181131874!GO:0032508;DNA duplex unwinding;0.00171853811092371!GO:0032392;DNA geometric change;0.00171853811092371!GO:0065009;regulation of a molecular function;0.00174494222011092!GO:0046483;heterocycle metabolic process;0.00179897345304624!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00180054090784384!GO:0005885;Arp2/3 protein complex;0.00185050426356606!GO:0040008;regulation of growth;0.0018746824560307!GO:0016481;negative regulation of transcription;0.00188777943267426!GO:0006779;porphyrin biosynthetic process;0.00195441264845889!GO:0033014;tetrapyrrole biosynthetic process;0.00195441264845889!GO:0006289;nucleotide-excision repair;0.00198287658535125!GO:0046467;membrane lipid biosynthetic process;0.00198383350836008!GO:0031072;heat shock protein binding;0.00219127084870223!GO:0005874;microtubule;0.0022858441185656!GO:0030132;clathrin coat of coated pit;0.00252498587773778!GO:0022890;inorganic cation transmembrane transporter activity;0.00253658446636238!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00265231475231895!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00265231475231895!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00265231475231895!GO:0016741;transferase activity, transferring one-carbon groups;0.00291434140866574!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00293005714193485!GO:0000428;DNA-directed RNA polymerase complex;0.00293005714193485!GO:0006950;response to stress;0.00310258982421862!GO:0048471;perinuclear region of cytoplasm;0.00312618851405398!GO:0048037;cofactor binding;0.00314614131735471!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00316194536427763!GO:0008168;methyltransferase activity;0.0032037106634602!GO:0006740;NADPH regeneration;0.00346468412478239!GO:0006098;pentose-phosphate shunt;0.00346468412478239!GO:0000059;protein import into nucleus, docking;0.00353755556477736!GO:0003682;chromatin binding;0.00358888215276202!GO:0006402;mRNA catabolic process;0.00368725543396979!GO:0006268;DNA unwinding during replication;0.00370824316793295!GO:0030137;COPI-coated vesicle;0.00374309874291777!GO:0030118;clathrin coat;0.00381587393837293!GO:0030663;COPI coated vesicle membrane;0.00381839784071894!GO:0030126;COPI vesicle coat;0.00381839784071894!GO:0008139;nuclear localization sequence binding;0.00401100520217287!GO:0042168;heme metabolic process;0.00429696837243717!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00434775749040135!GO:0043596;nuclear replication fork;0.00434775749040135!GO:0017166;vinculin binding;0.00452403140851917!GO:0006612;protein targeting to membrane;0.00455019497550749!GO:0030658;transport vesicle membrane;0.00456562408491034!GO:0004518;nuclease activity;0.00462433668956726!GO:0015631;tubulin binding;0.00480647475682992!GO:0005525;GTP binding;0.00483963938877921!GO:0050662;coenzyme binding;0.00491472775633313!GO:0016044;membrane organization and biogenesis;0.00500432809528581!GO:0006497;protein amino acid lipidation;0.00519150937581802!GO:0030036;actin cytoskeleton organization and biogenesis;0.00526509505736878!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00535186638918068!GO:0005774;vacuolar membrane;0.00545525596044492!GO:0006220;pyrimidine nucleotide metabolic process;0.00552304666640085!GO:0006979;response to oxidative stress;0.00600365402626144!GO:0005758;mitochondrial intermembrane space;0.00606364430652054!GO:0051087;chaperone binding;0.00617700632925715!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00618401721731409!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00621751636522387!GO:0050794;regulation of cellular process;0.00636010446251424!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00651440784224775!GO:0003711;transcription elongation regulator activity;0.00660980940379169!GO:0000049;tRNA binding;0.0070241919582809!GO:0008632;apoptotic program;0.00710279352000925!GO:0006302;double-strand break repair;0.00758525605189011!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00780581143303!GO:0045792;negative regulation of cell size;0.00780755229861207!GO:0031902;late endosome membrane;0.0078190848510453!GO:0016125;sterol metabolic process;0.00782321697197449!GO:0051540;metal cluster binding;0.00787256093980837!GO:0051536;iron-sulfur cluster binding;0.00787256093980837!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00799779739297479!GO:0019206;nucleoside kinase activity;0.00805955185208907!GO:0030308;negative regulation of cell growth;0.0081128483978346!GO:0042158;lipoprotein biosynthetic process;0.00811713964285299!GO:0006401;RNA catabolic process;0.0084296559422995!GO:0030134;ER to Golgi transport vesicle;0.00846256033038822!GO:0006506;GPI anchor biosynthetic process;0.00888829216495192!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00931912158126306!GO:0033673;negative regulation of kinase activity;0.0093864096085157!GO:0006469;negative regulation of protein kinase activity;0.0093864096085157!GO:0030119;AP-type membrane coat adaptor complex;0.00954822462828907!GO:0007346;regulation of progression through mitotic cell cycle;0.0095508965393634!GO:0051539;4 iron, 4 sulfur cluster binding;0.00959804238987512!GO:0031124;mRNA 3'-end processing;0.00977245091492901!GO:0006783;heme biosynthetic process;0.00998748576775364!GO:0016272;prefoldin complex;0.0100981096175594!GO:0030660;Golgi-associated vesicle membrane;0.0101624816389245!GO:0007093;mitotic cell cycle checkpoint;0.0102213515744326!GO:0006405;RNA export from nucleus;0.010247268434703!GO:0044437;vacuolar part;0.0106667535369862!GO:0030127;COPII vesicle coat;0.0108062370056819!GO:0012507;ER to Golgi transport vesicle membrane;0.0108062370056819!GO:0000287;magnesium ion binding;0.0108481175136016!GO:0008186;RNA-dependent ATPase activity;0.0111424892277726!GO:0051348;negative regulation of transferase activity;0.0112947538356928!GO:0005637;nuclear inner membrane;0.0114362563029071!GO:0004527;exonuclease activity;0.0115516955451367!GO:0048487;beta-tubulin binding;0.0117676427087955!GO:0005996;monosaccharide metabolic process;0.0119805493703993!GO:0006007;glucose catabolic process;0.0121345648706748!GO:0006505;GPI anchor metabolic process;0.0121345648706748!GO:0006284;base-excision repair;0.0122605500291505!GO:0000228;nuclear chromosome;0.0123625499261525!GO:0009303;rRNA transcription;0.0124440854491525!GO:0030433;ER-associated protein catabolic process;0.01245162691904!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.01245162691904!GO:0030659;cytoplasmic vesicle membrane;0.0126020009721744!GO:0030131;clathrin adaptor complex;0.0126411005741326!GO:0006807;nitrogen compound metabolic process;0.0128117025334341!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0129165251341331!GO:0006352;transcription initiation;0.0134715876630191!GO:0006739;NADP metabolic process;0.0135255299059139!GO:0030125;clathrin vesicle coat;0.0135710215439777!GO:0030665;clathrin coated vesicle membrane;0.0135710215439777!GO:0006611;protein export from nucleus;0.0137714440197104!GO:0031970;organelle envelope lumen;0.013802463293776!GO:0019318;hexose metabolic process;0.0142152090838648!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0144699784374468!GO:0016363;nuclear matrix;0.0144791504252072!GO:0030027;lamellipodium;0.0147524631584808!GO:0009262;deoxyribonucleotide metabolic process;0.0155038262818316!GO:0001726;ruffle;0.015870116662377!GO:0009308;amine metabolic process;0.0161263688614724!GO:0006509;membrane protein ectodomain proteolysis;0.0161935732000744!GO:0033619;membrane protein proteolysis;0.0161935732000744!GO:0051052;regulation of DNA metabolic process;0.0162612621062188!GO:0000910;cytokinesis;0.0162947190881836!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0164218496875343!GO:0007243;protein kinase cascade;0.0164218496875343!GO:0000084;S phase of mitotic cell cycle;0.0165054844159762!GO:0030521;androgen receptor signaling pathway;0.0168229188874935!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0172753268927467!GO:0035258;steroid hormone receptor binding;0.0180254259964405!GO:0005881;cytoplasmic microtubule;0.0180254259964405!GO:0005765;lysosomal membrane;0.0180254259964405!GO:0000209;protein polyubiquitination;0.0183843253283229!GO:0032561;guanyl ribonucleotide binding;0.0186971391055063!GO:0019001;guanyl nucleotide binding;0.0186971391055063!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.018865012407077!GO:0045039;protein import into mitochondrial inner membrane;0.018865012407077!GO:0006891;intra-Golgi vesicle-mediated transport;0.0191352739485812!GO:0030508;thiol-disulfide exchange intermediate activity;0.0195962671467412!GO:0043601;nuclear replisome;0.0196243271804738!GO:0030894;replisome;0.0196243271804738!GO:0006519;amino acid and derivative metabolic process;0.0201327215932142!GO:0045926;negative regulation of growth;0.0201711917734106!GO:0008652;amino acid biosynthetic process;0.020585231197882!GO:0040029;regulation of gene expression, epigenetic;0.0211406684034475!GO:0006650;glycerophospholipid metabolic process;0.0216370822329331!GO:0051287;NAD binding;0.0216804445632893!GO:0000776;kinetochore;0.0218443838200811!GO:0006310;DNA recombination;0.0218443838200811!GO:0043189;H4/H2A histone acetyltransferase complex;0.0220713477529316!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0221177188797107!GO:0009451;RNA modification;0.0221177188797107!GO:0019798;procollagen-proline dioxygenase activity;0.0221177188797107!GO:0005862;muscle thin filament tropomyosin;0.0222511283748078!GO:0006733;oxidoreduction coenzyme metabolic process;0.022275448438832!GO:0030145;manganese ion binding;0.0225183359016171!GO:0050790;regulation of catalytic activity;0.0226729077367104!GO:0045941;positive regulation of transcription;0.0229228840583221!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0234812197824341!GO:0005869;dynactin complex;0.0234889018306208!GO:0004004;ATP-dependent RNA helicase activity;0.023637821541376!GO:0048518;positive regulation of biological process;0.023637821541376!GO:0006596;polyamine biosynthetic process;0.023637821541376!GO:0007021;tubulin folding;0.023637821541376!GO:0031543;peptidyl-proline dioxygenase activity;0.0236732530894892!GO:0051128;regulation of cellular component organization and biogenesis;0.0242360502045541!GO:0009112;nucleobase metabolic process;0.0244682581728014!GO:0050178;phenylpyruvate tautomerase activity;0.0249221095554464!GO:0007040;lysosome organization and biogenesis;0.0250068403438133!GO:0043065;positive regulation of apoptosis;0.0253871360050037!GO:0004003;ATP-dependent DNA helicase activity;0.0256379618631084!GO:0000096;sulfur amino acid metabolic process;0.0257796157943794!GO:0043022;ribosome binding;0.0259389411696164!GO:0030029;actin filament-based process;0.0259542250671293!GO:0006066;alcohol metabolic process;0.0261856842648124!GO:0035267;NuA4 histone acetyltransferase complex;0.0262914668097872!GO:0004177;aminopeptidase activity;0.0263458806149609!GO:0048500;signal recognition particle;0.0264223147519523!GO:0003756;protein disulfide isomerase activity;0.0268207714671202!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0268207714671202!GO:0006275;regulation of DNA replication;0.0270232564114646!GO:0007050;cell cycle arrest;0.0278706950984696!GO:0007017;microtubule-based process;0.0280321327788656!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0281996305914111!GO:0003887;DNA-directed DNA polymerase activity;0.0285915496789117!GO:0043068;positive regulation of programmed cell death;0.0286893970381676!GO:0015036;disulfide oxidoreductase activity;0.0286907296734036!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0286907296734036!GO:0010257;NADH dehydrogenase complex assembly;0.0286907296734036!GO:0033108;mitochondrial respiratory chain complex assembly;0.0286907296734036!GO:0000118;histone deacetylase complex;0.0286907296734036!GO:0008629;induction of apoptosis by intracellular signals;0.0288434562355244!GO:0000178;exosome (RNase complex);0.0288434562355244!GO:0031529;ruffle organization and biogenesis;0.0288755230147092!GO:0006458;'de novo' protein folding;0.0293339305954635!GO:0051084;'de novo' posttranslational protein folding;0.0293339305954635!GO:0005832;chaperonin-containing T-complex;0.029490458624937!GO:0007059;chromosome segregation;0.0305545294246419!GO:0030496;midbody;0.0314435256557198!GO:0008538;proteasome activator activity;0.031704544430743!GO:0045892;negative regulation of transcription, DNA-dependent;0.0318105028817194!GO:0008092;cytoskeletal protein binding;0.0320148932012102!GO:0000030;mannosyltransferase activity;0.0323789643199858!GO:0051059;NF-kappaB binding;0.0330495755804592!GO:0033559;unsaturated fatty acid metabolic process;0.0332475943087596!GO:0006636;unsaturated fatty acid biosynthetic process;0.0332475943087596!GO:0009116;nucleoside metabolic process;0.0332475943087596!GO:0043086;negative regulation of catalytic activity;0.0332774400949257!GO:0004549;tRNA-specific ribonuclease activity;0.033409728138517!GO:0008022;protein C-terminus binding;0.0334519908765729!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0335784419891892!GO:0030911;TPR domain binding;0.0336937318405799!GO:0044433;cytoplasmic vesicle part;0.0343359890632638!GO:0043407;negative regulation of MAP kinase activity;0.0348365452374325!GO:0004523;ribonuclease H activity;0.0348478846463928!GO:0008312;7S RNA binding;0.034877815951706!GO:0031123;RNA 3'-end processing;0.0355064245424217!GO:0008047;enzyme activator activity;0.0355064245424217!GO:0000123;histone acetyltransferase complex;0.0355425598328401!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0357740991500928!GO:0051320;S phase;0.0359115586792759!GO:0009124;nucleoside monophosphate biosynthetic process;0.0364271046345801!GO:0009123;nucleoside monophosphate metabolic process;0.0364271046345801!GO:0008286;insulin receptor signaling pathway;0.0365516205921274!GO:0048144;fibroblast proliferation;0.0367291830362359!GO:0048145;regulation of fibroblast proliferation;0.0367291830362359!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0368311639192895!GO:0051098;regulation of binding;0.0378186229430189!GO:0005876;spindle microtubule;0.0382455984389362!GO:0042393;histone binding;0.0384798141860984!GO:0016791;phosphoric monoester hydrolase activity;0.0385240071272538!GO:0006270;DNA replication initiation;0.0392006607512485!GO:0031272;regulation of pseudopodium formation;0.0393265568682498!GO:0031269;pseudopodium formation;0.0393265568682498!GO:0031344;regulation of cell projection organization and biogenesis;0.0393265568682498!GO:0031268;pseudopodium organization and biogenesis;0.0393265568682498!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0393265568682498!GO:0031274;positive regulation of pseudopodium formation;0.0393265568682498!GO:0007052;mitotic spindle organization and biogenesis;0.0393265568682498!GO:0043433;negative regulation of transcription factor activity;0.0394003152322161!GO:0004526;ribonuclease P activity;0.0394003152322161!GO:0004448;isocitrate dehydrogenase activity;0.0398640525175205!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0421552515636727!GO:0008287;protein serine/threonine phosphatase complex;0.0426286671627554!GO:0004674;protein serine/threonine kinase activity;0.0426929061617323!GO:0007033;vacuole organization and biogenesis;0.0429245061221066!GO:0043414;biopolymer methylation;0.0431298422548816!GO:0007034;vacuolar transport;0.0431298422548816!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0431298422548816!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0431298422548816!GO:0008180;signalosome;0.043178003756875!GO:0031901;early endosome membrane;0.0434128547957535!GO:0030041;actin filament polymerization;0.0434128547957535!GO:0004680;casein kinase activity;0.0449926726288964!GO:0006984;ER-nuclear signaling pathway;0.0453720799340086!GO:0046822;regulation of nucleocytoplasmic transport;0.0461875594434457!GO:0008637;apoptotic mitochondrial changes;0.046521902284631!GO:0031418;L-ascorbic acid binding;0.046521902284631!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0465775888286625!GO:0046365;monosaccharide catabolic process;0.0467492995049129!GO:0031371;ubiquitin conjugating enzyme complex;0.0469370109913892!GO:0005975;carbohydrate metabolic process;0.0471517893319155!GO:0016860;intramolecular oxidoreductase activity;0.0471665229055488!GO:0006378;mRNA polyadenylation;0.0475280823392091!GO:0009081;branched chain family amino acid metabolic process;0.0477976766475793!GO:0051775;response to redox state;0.0489859725258663!GO:0006980;redox signal response;0.0489859725258663
 
|sample_id=11616
 
|sample_id=11616
 
|sample_note=
 
|sample_note=
Line 76: Line 100:
 
|sample_tissue=bone marrow
 
|sample_tissue=bone marrow
 
|top_motifs=PBX1:1.64580801491;GZF1:1.27413080254;HOX{A5,B5}:1.21338508684;NR3C1:1.17443205097;NR5A1,2:1.04595257148;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.01504740023;HES1:1.00553307235;GFI1:0.962438142366;LEF1_TCF7_TCF7L1,2:0.919576398529;POU2F1..3:0.903700605464;NR6A1:0.834369360824;GTF2A1,2:0.821993479463;ONECUT1,2:0.737785482418;TOPORS:0.733832068985;RXRA_VDR{dimer}:0.71787991318;ESR1:0.705908852782;EN1,2:0.696135656641;GFI1B:0.684810325489;SPZ1:0.675619727113;E2F1..5:0.654628775575;TAL1_TCF{3,4,12}:0.651749397411;NFE2L1:0.61894635739;PAX3,7:0.582304201164;PPARG:0.580091695489;HOX{A6,A7,B6,B7}:0.579357272614;ZIC1..3:0.558784042379;KLF4:0.546205530723;STAT5{A,B}:0.501267129103;PAX8:0.494749333704;RXR{A,B,G}:0.494051962427;NANOG:0.472090477462;FOXD3:0.444335739999;IKZF1:0.418305201344;AR:0.412792997283;SRF:0.39734058985;EBF1:0.387872482475;PRRX1,2:0.376286458796;POU3F1..4:0.367606382979;AIRE:0.362999119505;RREB1:0.354093319281;FOXL1:0.349773236668;HOXA9_MEIS1:0.345734315383;SOX17:0.329432816282;NFY{A,B,C}:0.325308131363;LMO2:0.305908467105;TLX1..3_NFIC{dimer}:0.278491459624;TFAP4:0.277444995441;ZNF238:0.274386036901;HNF4A_NR2F1,2:0.234844586619;TFCP2:0.230939101443;ZBTB6:0.225768951225;TFAP2{A,C}:0.221235518078;TFDP1:0.196955087146;TEAD1:0.195937456668;ESRRA:0.191544333606;VSX1,2:0.18643241792;MYB:0.181086451844;TBX4,5:0.173800347709;MEF2{A,B,C,D}:0.163451998792;ZNF423:0.158808064829;POU5F1:0.146334072343;UFEwm:0.143048363967;GLI1..3:0.134869241165;NFE2L2:0.114983936659;XCPE1{core}:0.111594260411;PDX1:0.108820866194;BACH2:0.105127176016;RORA:0.103267325761;TBP:0.099837553802;ATF6:0.0960428276663;MYOD1:0.0948730468207;OCT4_SOX2{dimer}:0.0856673683432;LHX3,4:0.0835232243026;SOX{8,9,10}:0.0731012228916;NR1H4:0.069083124427;POU1F1:0.0658624128706;HIC1:0.0616768179589;DBP:0.0573840211018;TP53:0.0493261621722;HLF:0.045790904708;FOS_FOS{B,L1}_JUN{B,D}:0.0233013315609;EVI1:0.0167643483079;NFE2:0.0150599122563;YY1:0.00508877752231;MTF1:0.00259939043368;GATA6:0.00174036793197;REST:0.00143167842561;HNF1A:-3.64726836786e-05;FOSL2:-0.00840922079431;GCM1,2:-0.0131574701717;HMX1:-0.0204146801295;ARID5B:-0.0508761933649;CUX2:-0.0754842998965;RUNX1..3:-0.0854361408022;NKX2-3_NKX2-5:-0.0865822039223;MAFB:-0.108601289913;CRX:-0.112277117885;ALX4:-0.118120912955;PAX1,9:-0.121839158971;FOXP3:-0.129024278831;ZNF148:-0.151462238246;STAT2,4,6:-0.17163262953;bHLH_family:-0.197134787831;RFX1:-0.208805340396;ADNP_IRX_SIX_ZHX:-0.216352789852;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.23028120921;MTE{core}:-0.246958192842;NKX2-2,8:-0.25254883743;POU6F1:-0.258911936273;NFKB1_REL_RELA:-0.265477899851;NKX2-1,4:-0.268861950822;TGIF1:-0.278352896493;SOX5:-0.296900904819;TFAP2B:-0.317224942215;JUN:-0.322401869058;ZNF384:-0.323761243978;BREu{core}:-0.323975266764;NRF1:-0.32978888039;PATZ1:-0.335226822391;PITX1..3:-0.337978652066;PAX4:-0.346449346497;FOXQ1:-0.353680172472;ZNF143:-0.358250314938;GTF2I:-0.375167126805;EGR1..3:-0.376639835019;AHR_ARNT_ARNT2:-0.383087326534;HOX{A4,D4}:-0.423628101943;ALX1:-0.429394749905;PRDM1:-0.455579930094;SNAI1..3:-0.501306807579;SPIB:-0.509529568792;MED-1{core}:-0.526065166295;HSF1,2:-0.532247516822;NKX6-1,2:-0.536936815502;ETS1,2:-0.553774188771;FOX{F1,F2,J1}:-0.560065722903;NHLH1,2:-0.570295610313;DMAP1_NCOR{1,2}_SMARC:-0.572389324535;NFIX:-0.577248564065;CREB1:-0.580328862043;MYBL2:-0.582832276649;CEBPA,B_DDIT3:-0.586540492481;HAND1,2:-0.605291331608;NANOG{mouse}:-0.608891223239;TEF:-0.615473454046;NFATC1..3:-0.626467335358;GATA4:-0.634191714886;ZFP161:-0.638474361326;ATF5_CREB3:-0.642056781487;MYFfamily:-0.646733122215;SPI1:-0.653498384576;ELF1,2,4:-0.658497012429;HBP1_HMGB_SSRP1_UBTF:-0.680050196824;ELK1,4_GABP{A,B1}:-0.680103759554;FOXM1:-0.688781643745;IKZF2:-0.690070673223;NKX3-2:-0.698645470134;CDC5L:-0.704104094159;MZF1:-0.704440472639;XBP1:-0.734959480124;CDX1,2,4:-0.768298732161;PAX6:-0.77763839738;FOXA2:-0.784889091902;T:-0.797887871622;SP1:-0.830126046063;FOX{I1,J2}:-0.835001591394;ZEB1:-0.841872608179;NFIL3:-0.84872339103;PAX5:-0.851646247482;FOXP1:-0.869160949683;ZBTB16:-0.87781209132;RBPJ:-0.881425808725;IRF7:-0.883005778547;NKX3-1:-0.91300655423;SOX2:-0.930462975054;MAZ:-0.97982841445;SMAD1..7,9:-0.986123197971;PAX2:-0.999475362089;ATF2:-1.01075294878;RFX2..5_RFXANK_RFXAP:-1.15406113504;IRF1,2:-1.17488691747;HMGA1,2:-1.19527919882;ATF4:-1.22126821121;HIF1A:-1.29288907352;EP300:-1.33440996911;BPTF:-1.50356288143;SREBF1,2:-1.56600509311;FOX{D1,D2}:-1.58615920476;TLX2:-1.7311010613;FOXO1,3,4:-1.87564486704;STAT1,3:-1.88332303363;FOXN1:-2.05750397403
 
|top_motifs=PBX1:1.64580801491;GZF1:1.27413080254;HOX{A5,B5}:1.21338508684;NR3C1:1.17443205097;NR5A1,2:1.04595257148;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.01504740023;HES1:1.00553307235;GFI1:0.962438142366;LEF1_TCF7_TCF7L1,2:0.919576398529;POU2F1..3:0.903700605464;NR6A1:0.834369360824;GTF2A1,2:0.821993479463;ONECUT1,2:0.737785482418;TOPORS:0.733832068985;RXRA_VDR{dimer}:0.71787991318;ESR1:0.705908852782;EN1,2:0.696135656641;GFI1B:0.684810325489;SPZ1:0.675619727113;E2F1..5:0.654628775575;TAL1_TCF{3,4,12}:0.651749397411;NFE2L1:0.61894635739;PAX3,7:0.582304201164;PPARG:0.580091695489;HOX{A6,A7,B6,B7}:0.579357272614;ZIC1..3:0.558784042379;KLF4:0.546205530723;STAT5{A,B}:0.501267129103;PAX8:0.494749333704;RXR{A,B,G}:0.494051962427;NANOG:0.472090477462;FOXD3:0.444335739999;IKZF1:0.418305201344;AR:0.412792997283;SRF:0.39734058985;EBF1:0.387872482475;PRRX1,2:0.376286458796;POU3F1..4:0.367606382979;AIRE:0.362999119505;RREB1:0.354093319281;FOXL1:0.349773236668;HOXA9_MEIS1:0.345734315383;SOX17:0.329432816282;NFY{A,B,C}:0.325308131363;LMO2:0.305908467105;TLX1..3_NFIC{dimer}:0.278491459624;TFAP4:0.277444995441;ZNF238:0.274386036901;HNF4A_NR2F1,2:0.234844586619;TFCP2:0.230939101443;ZBTB6:0.225768951225;TFAP2{A,C}:0.221235518078;TFDP1:0.196955087146;TEAD1:0.195937456668;ESRRA:0.191544333606;VSX1,2:0.18643241792;MYB:0.181086451844;TBX4,5:0.173800347709;MEF2{A,B,C,D}:0.163451998792;ZNF423:0.158808064829;POU5F1:0.146334072343;UFEwm:0.143048363967;GLI1..3:0.134869241165;NFE2L2:0.114983936659;XCPE1{core}:0.111594260411;PDX1:0.108820866194;BACH2:0.105127176016;RORA:0.103267325761;TBP:0.099837553802;ATF6:0.0960428276663;MYOD1:0.0948730468207;OCT4_SOX2{dimer}:0.0856673683432;LHX3,4:0.0835232243026;SOX{8,9,10}:0.0731012228916;NR1H4:0.069083124427;POU1F1:0.0658624128706;HIC1:0.0616768179589;DBP:0.0573840211018;TP53:0.0493261621722;HLF:0.045790904708;FOS_FOS{B,L1}_JUN{B,D}:0.0233013315609;EVI1:0.0167643483079;NFE2:0.0150599122563;YY1:0.00508877752231;MTF1:0.00259939043368;GATA6:0.00174036793197;REST:0.00143167842561;HNF1A:-3.64726836786e-05;FOSL2:-0.00840922079431;GCM1,2:-0.0131574701717;HMX1:-0.0204146801295;ARID5B:-0.0508761933649;CUX2:-0.0754842998965;RUNX1..3:-0.0854361408022;NKX2-3_NKX2-5:-0.0865822039223;MAFB:-0.108601289913;CRX:-0.112277117885;ALX4:-0.118120912955;PAX1,9:-0.121839158971;FOXP3:-0.129024278831;ZNF148:-0.151462238246;STAT2,4,6:-0.17163262953;bHLH_family:-0.197134787831;RFX1:-0.208805340396;ADNP_IRX_SIX_ZHX:-0.216352789852;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.23028120921;MTE{core}:-0.246958192842;NKX2-2,8:-0.25254883743;POU6F1:-0.258911936273;NFKB1_REL_RELA:-0.265477899851;NKX2-1,4:-0.268861950822;TGIF1:-0.278352896493;SOX5:-0.296900904819;TFAP2B:-0.317224942215;JUN:-0.322401869058;ZNF384:-0.323761243978;BREu{core}:-0.323975266764;NRF1:-0.32978888039;PATZ1:-0.335226822391;PITX1..3:-0.337978652066;PAX4:-0.346449346497;FOXQ1:-0.353680172472;ZNF143:-0.358250314938;GTF2I:-0.375167126805;EGR1..3:-0.376639835019;AHR_ARNT_ARNT2:-0.383087326534;HOX{A4,D4}:-0.423628101943;ALX1:-0.429394749905;PRDM1:-0.455579930094;SNAI1..3:-0.501306807579;SPIB:-0.509529568792;MED-1{core}:-0.526065166295;HSF1,2:-0.532247516822;NKX6-1,2:-0.536936815502;ETS1,2:-0.553774188771;FOX{F1,F2,J1}:-0.560065722903;NHLH1,2:-0.570295610313;DMAP1_NCOR{1,2}_SMARC:-0.572389324535;NFIX:-0.577248564065;CREB1:-0.580328862043;MYBL2:-0.582832276649;CEBPA,B_DDIT3:-0.586540492481;HAND1,2:-0.605291331608;NANOG{mouse}:-0.608891223239;TEF:-0.615473454046;NFATC1..3:-0.626467335358;GATA4:-0.634191714886;ZFP161:-0.638474361326;ATF5_CREB3:-0.642056781487;MYFfamily:-0.646733122215;SPI1:-0.653498384576;ELF1,2,4:-0.658497012429;HBP1_HMGB_SSRP1_UBTF:-0.680050196824;ELK1,4_GABP{A,B1}:-0.680103759554;FOXM1:-0.688781643745;IKZF2:-0.690070673223;NKX3-2:-0.698645470134;CDC5L:-0.704104094159;MZF1:-0.704440472639;XBP1:-0.734959480124;CDX1,2,4:-0.768298732161;PAX6:-0.77763839738;FOXA2:-0.784889091902;T:-0.797887871622;SP1:-0.830126046063;FOX{I1,J2}:-0.835001591394;ZEB1:-0.841872608179;NFIL3:-0.84872339103;PAX5:-0.851646247482;FOXP1:-0.869160949683;ZBTB16:-0.87781209132;RBPJ:-0.881425808725;IRF7:-0.883005778547;NKX3-1:-0.91300655423;SOX2:-0.930462975054;MAZ:-0.97982841445;SMAD1..7,9:-0.986123197971;PAX2:-0.999475362089;ATF2:-1.01075294878;RFX2..5_RFXANK_RFXAP:-1.15406113504;IRF1,2:-1.17488691747;HMGA1,2:-1.19527919882;ATF4:-1.22126821121;HIF1A:-1.29288907352;EP300:-1.33440996911;BPTF:-1.50356288143;SREBF1,2:-1.56600509311;FOX{D1,D2}:-1.58615920476;TLX2:-1.7311010613;FOXO1,3,4:-1.87564486704;STAT1,3:-1.88332303363;FOXN1:-2.05750397403
 +
|xref=
 +
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11616-122A5;search_select_hide=table117:FF:11616-122A5
 
}}
 
}}

Latest revision as of 09:12, 4 June 2020

Name:Mesenchymal Stem Cells - bone marrow, donor2
Species:Human (Homo sapiens)
Library ID:CNhs12100
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebone marrow
dev stageNA
sexNA
ageNA
cell typemesenchymal stem cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC7505
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005989
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12100 CAGE DRX008352 DRR009224
Accession ID Hg19

Library idBAMCTSS
CNhs12100 DRZ000649 DRZ002034
Accession ID Hg38

Library idBAMCTSS
CNhs12100 DRZ011999 DRZ013384
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
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C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs12100

Jaspar motif P-value
MA0002.2 0.243
MA0003.1 0.344
MA0004.1 0.586
MA0006.1 0.657
MA0007.1 0.00238
MA0009.1 0.0638
MA0014.1 0.9
MA0017.1 0.117
MA0018.2 0.00293
MA0019.1 0.774
MA0024.1 0.705
MA0025.1 0.114
MA0027.1 0.281
MA0028.1 0.421
MA0029.1 0.0394
MA0030.1 1.60618e-5
MA0031.1 8.99065e-6
MA0035.2 0.409
MA0038.1 0.0399
MA0039.2 0.787
MA0040.1 0.16
MA0041.1 0.494
MA0042.1 0.533
MA0043.1 4.08483e-5
MA0046.1 0.106
MA0047.2 0.183
MA0048.1 0.187
MA0050.1 1.61196e-11
MA0051.1 4.82727e-7
MA0052.1 0.0158
MA0055.1 0.11
MA0057.1 0.372
MA0058.1 0.848
MA0059.1 0.096
MA0060.1 0.00214
MA0061.1 0.339
MA0062.2 0.0177
MA0065.2 0.0672
MA0066.1 0.0212
MA0067.1 0.0398
MA0068.1 9.37233e-4
MA0069.1 0.811
MA0070.1 0.0455
MA0071.1 0.0353
MA0072.1 0.105
MA0073.1 0.772
MA0074.1 0.71
MA0076.1 0.0491
MA0077.1 0.762
MA0078.1 0.415
MA0079.2 0.181
MA0080.2 3.05086e-6
MA0081.1 0.0469
MA0083.1 0.0041
MA0084.1 0.439
MA0087.1 0.474
MA0088.1 0.181
MA0090.1 0.194
MA0091.1 0.234
MA0092.1 0.333
MA0093.1 0.761
MA0099.2 0.00174
MA0100.1 0.893
MA0101.1 0.74
MA0102.2 3.80166e-4
MA0103.1 0.441
MA0104.2 0.379
MA0105.1 0.0191
MA0106.1 0.0834
MA0107.1 0.785
MA0108.2 0.00313
MA0111.1 0.703
MA0112.2 5.16574e-4
MA0113.1 0.0135
MA0114.1 0.0554
MA0115.1 0.889
MA0116.1 0.0233
MA0117.1 0.921
MA0119.1 0.0223
MA0122.1 0.505
MA0124.1 0.498
MA0125.1 0.131
MA0131.1 0.566
MA0135.1 0.0362
MA0136.1 1.1045e-5
MA0137.2 9.61317e-4
MA0138.2 0.0724
MA0139.1 0.585
MA0140.1 0.158
MA0141.1 0.00921
MA0142.1 0.401
MA0143.1 0.898
MA0144.1 0.307
MA0145.1 0.527
MA0146.1 0.0407
MA0147.1 0.153
MA0148.1 0.799
MA0149.1 0.0464
MA0150.1 0.734
MA0152.1 0.437
MA0153.1 0.812
MA0154.1 0.115
MA0155.1 0.149
MA0156.1 0.00238
MA0157.1 0.0864
MA0159.1 0.404
MA0160.1 0.0366
MA0162.1 0.237
MA0163.1 0.00126
MA0164.1 0.659
MA0258.1 0.0172
MA0259.1 0.511



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs12100

Novel motif P-value
1 0.133
10 0.358
100 0.395
101 0.536
102 0.548
103 0.264
104 0.401
105 0.123
106 0.111
107 0.125
108 0.537
109 0.0284
11 0.0119
110 0.0609
111 0.12
112 0.252
113 0.569
114 0.243
115 0.976
116 0.135
117 0.404
118 0.39
119 0.257
12 0.916
120 0.0783
121 0.963
122 0.999
123 0.915
124 0.672
125 0.139
126 0.58
127 0.0661
128 0.21
129 0.586
13 0.32
130 0.768
131 0.621
132 0.338
133 0.449
134 0.831
135 0.583
136 0.646
137 0.197
138 0.203
139 0.374
14 0.982
140 0.335
141 0.293
142 0.272
143 0.0807
144 0.759
145 0.098
146 0.662
147 0.438
148 0.818
149 0.189
15 0.165
150 0.35
151 0.454
152 0.206
153 0.916
154 0.746
155 0.749
156 0.236
157 0.753
158 0.912
159 0.715
16 0.23
160 0.0026
161 0.938
162 0.311
163 0.396
164 0.66
165 0.717
166 0.731
167 0.538
168 0.796
169 0.0401
17 0.18
18 0.0801
19 0.111
2 0.673
20 0.898
21 0.514
22 0.161
23 0.247
24 0.819
25 0.79
26 0.0112
27 0.258
28 0.481
29 0.217
3 0.226
30 0.578
31 0.427
32 4.8488e-4
33 0.239
34 0.678
35 0.688
36 0.055
37 0.151
38 0.232
39 0.542
4 0.409
40 0.0176
41 0.757
42 0.488
43 0.142
44 0.377
45 0.6
46 0.0103
47 0.11
48 0.1
49 0.0902
5 0.589
50 0.596
51 0.326
52 0.899
53 0.993
54 0.339
55 0.343
56 0.252
57 0.0675
58 0.898
59 0.0451
6 0.946
60 0.582
61 0.573
62 0.406
63 0.165
64 0.101
65 0.0554
66 0.0483
67 0.888
68 0.377
69 0.00779
7 0.578
70 0.342
71 0.0534
72 0.745
73 0.0915
74 0.869
75 0.256
76 0.872
77 0.183
78 0.334
79 0.143
8 0.00854
80 0.847
81 0.335
82 0.191
83 0.502
84 0.37
85 0.228
86 0.845
87 0.503
88 0.377
89 0.113
9 0.443
90 0.702
91 0.329
92 0.275
93 0.211
94 0.0876
95 0.0823
96 0.28
97 0.746
98 0.093
99 0.00863



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs12100


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002092 (bone marrow cell)
0002540 (mesenchymal stem cell of the bone marrow)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002371 (bone marrow)
0001474 (bone element)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000097 (human mesenchymal stem cell of bone marrow sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

CL:0000134 (mesenchymal cell)