FF:11625-122B5: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005630 | |||
|accession_numbers=CAGE;DRX008059;DRR008931;DRZ000356;DRZ001741;DRZ011706;DRZ013091 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000034 | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000021,FF:0000026,FF:0000001 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD34%252b%2520Progenitors%252c%2520donor2.CNhs12205.11625-122B5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD34%252b%2520Progenitors%252c%2520donor2.CNhs12205.11625-122B5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD34%252b%2520Progenitors%252c%2520donor2.CNhs12205.11625-122B5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD34%252b%2520Progenitors%252c%2520donor2.CNhs12205.11625-122B5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD34%252b%2520Progenitors%252c%2520donor2.CNhs12205.11625-122B5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11625-122B5 | |id=FF:11625-122B5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000026 | ||
|is_obsolete= | |||
|library_id=CNhs12205 | |||
|library_id_phase_based=2:CNhs12205 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11625 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11625 | |||
|name=CD34+ Progenitors, donor2 | |name=CD34+ Progenitors, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12205,LSID976,release010,COMPLETED | |profile_hcage=CNhs12205,LSID976,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0.510817598835734,0,0,0,0,0.193266156112807,-0.160318030086386,0,-0.277362132193514,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0.214190980924287,0,-0.0979578962680575,0,0.290037056355742,-0.132956589778862,0,0,0,0.193266156112807,0,0.0966330780564035,0,0.193266156112807,0,0,0,0,-0.317954060866147,0,0,0,0,0,0,0,0,0.072418056943569,0,0,0,0,0,-0.0536171156364386,0,-0.0969923612426051,0,0.193266156112807,-0.097343627213097,0,0.0966330780564035,0,0,0,0,0.193266156112807,0,0,0,0.998613998544746,0,0,0.69227922951678,0,0,0,0,0,0,0,0,0,0,-0.293239148755966,0,0,0,-0.0584468268118252,0.00299357822841833,0,0,0.69494930996283,0,0.330346610610868,-0.138477200800895,0,0,0,0,0,0.443980239942894,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,-0.216899958319399,-1.17635918936661,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.330346610610868,0,0,0,0,0,0,0,0,0,0,0,-0.247178875285564,0.0966330780564035,-0.0457042569034343,0.436558970188012,0,0.193266156112807,0.0461218691713995,0,0.193266156112807,0,0,0,0,0.510817598835734,0.193266156112807,0,-0.128119866952565,0.193266156112807,-0.0504125515893149,0,0,0,0,0.0966330780564035,0.716900275233841,0,-0.17425806114951,-0.0683442610773682,0,0,0,0,-0.270240669334324,0,-0.120879483793741,-0.0827201683234173,0,-0.534381333911535,0.683390374328857,0,0,0,0.0915987990864795,-0.507561314557154,0,0.193266156112807,0.0714863043609332,0.074059180857208,0,0,-0.391044581551635,0,-0.0461198743758853,-0.152234972325849,0,-0.103464540124841,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,0.365290632837811,0,0,0,0,-0.247857046203617,0,0,-0.373286155956567,-0.269631976484861,0,0.142118170371489,0,0.27768438570157,0.00993850837301745,0.136428197397994,-0.138970437626661,-0.147401849371139,-0.189981719549847,0,-0.657477514022737,0.0336058231643519,0.0741712209389565,-0.111222567672068,-0.0705346433613992,-1.0381423521743,0.0133692312947247,0,0,0,-0.76514378723743,0,0.176502747122291,-0.296848558363966,0.223394365149531,-0.507715348874376,-0.263046669284076,-0.387956129705895,0.169626272018133,-0.0395325284566706,-0.0290544910480206,-0.0186141459472569,-0.4215723249037,0,0.998613998544746,0,0.0623544690359485,0.160889805054617,0.302550795678716,0,0.335900990467383,-0.0683442610773682,0.0966330780564035,0.10854424529376,-0.287776176788791,0,0,-0.150395269022838,0,0,0.098802088831021,0,0,0.0968469657702982,0.10029818409885,0.195526400293029,0,0.083602070592053,-0.0733457035298985,0.246074797344301,0,0.50434705142584,0.0472562586554129,-0.104807996248485,0.135748157252338,0,-0.141918473728536,-0.503395712835306,-0.10415090115199,0.00598715645683667,-0.0584468268118252,0.925436177032673,0.146871557491516,0.0551203257407593,0.066312344451615,-0.124307696593413,-0.0881268324752877,0,0.138827755613869,0.852874068434202,-0.11396929079003,-0.263634740665063,0,0.123323342745261,0,0.320262501028829,0,0.0384108381905244,-0.347167595360433,0.647432380813089,0.0287173623636896,0,-0.0632237589938601,-0.788130937773974,0,-0.27238437317198,0.0393110812401386,0,0.489423243794377,-0.697695966512583,0.517159327634248,0.0752015242450924,0,-0.59681400227685,0,0,-0.0045843421675795,-0.235476037764389,0,-0.217844097694174,-0.415936758100589,-0.410949885082487,-0.115971073434934,0,0,-0.645700337992725,0,0,-0.412661907705223,-0.132108261297753,-0.293239148755966,0.769046164645493,0,-0.108622809454255,0,0,0.149016409237492,0.326544175202668,-0.314760172814119,0,0,-0.15324821854242,-0.116628112990133,0,0.259905165657737,0,-0.195265690557764,0,0.108495058087785,0,0,0,0,0,-0.395427164862616,-0.161567174103641,0,0.0502295000896366,0,0,0,0,0,0.317578880718299,0,0,-0.95254051169066,0.0092901175276068,-0.12301741567642,0,0,0,0,-0.215723402553475,0.535866309015316,0,0.0614034496151754,0,0,0,0,-0.0861409897892114,0,0,0.0966330780564035,0.290037056355742,-0.057730457053664,-0.52308379245695,0,0,0,-0.27695440160179,0.193266156112807,0,0,0,0.472426269128375,0,0,-0.63193017338638,0,-0.0403855513052416,-0.0815818795468414,0,0.222755846566493,-0.281660793434904,-1.11635418453565,0,0,0.167034830058687,0,0,0.0303690293850414,0,0,0,0,0,0.163272087601334,0,0,1.38989861992566,-0.0210483562869485,0,0,0,0,0,0,0,0,0,0,0,-0.028023291156595,-0.0922240566585104,-0.0640596705171081,0,0,0,0,0,0,-0.0241060230789031,-0.308312862826852,0,0.193266156112807,0,0,0,0,0,0,-0.471425939663242,0,0,0,0,0,-0.0969923612426051,0,0,0.193266156112807,0,-0.564807121153884,0,0.193266156112807,-0.277362132193514,0,0,0,0,0,0,0,0,0,0.510817598835734,0,0,0,0.0699470700773594,-0.999322978843403,0,0,0,0,0,0,0,0.0517108769965774,0,0,0,0,1.82442420769475,0,0,0,-0.104796384789156,0,-0.160318030086386,0,0,0,0.0966330780564035,0,0,0,0,0,0,0,0,0,0,0,0,0.428381961848574,0.163272087601334,0,0,0,-0.568135431096206,-0.0224288921427321,0,-0.0457880369896895,0,0,0.0574087037227,0,0,0,0,0,0.290037056355742,-0.031340424028527,0,0,0,0,0,0,0,0,0.163272087601334,0.973480156564438,0,0.193266156112807,0.193266156112807,0,0,0,0,0.193266156112807,0,0,0,0.322295658531041,0,0,0,0.0752949769028222,0,0,0,0,0,0,0,-0.0979578962680575,0,0,1.26973678680163,0,0,0,0,0,0,-0.0737858597324224,-0.283220399823148,-0.0287253622275905,0,0,0,0.108886515118879,0,0,-0.107815646026168,0,-0.0667773874189013,0,0,0.510817598835734,0,0,0,0,0,0,0,0,0.47340095608097,0.0966330780564035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0.193266156112807,0.352041877474271,0,0,0,0,0,0,0,0,0,0,0,0.0966330780564035,0,0,0,0,0,0,0,0,0,0.163272087601334,0,0.214190980924287,0.193266156112807,0.0966330780564035,0,0.428381961848574,0.475400339084308,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113247687844169,0,0,0,0.29773136917869,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.69227922951678,0,0,0,0,0,0.193266156112807,0,-0.405428866950395,0,0,0,0,0,0,0,0,0,0.193266156112807,0,0,0,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| |||
|rna_box=122 | |rna_box=122 | ||
|rna_catalog_number=3H100-60-5 | |rna_catalog_number=3H100-60-5 | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=0.5 | |rna_weight_ug=0.5 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 91: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;8.33716087331819e-210!GO:0043227;membrane-bound organelle;2.18037574020221e-177!GO:0043231;intracellular membrane-bound organelle;3.6909604938471e-177!GO:0043226;organelle;2.61546316353832e-168!GO:0043229;intracellular organelle;1.33572220463957e-167!GO:0005737;cytoplasm;9.390092505679e-130!GO:0005634;nucleus;4.20957390612436e-100!GO:0044422;organelle part;7.73900350229612e-95!GO:0043170;macromolecule metabolic process;2.93550213248383e-93!GO:0044446;intracellular organelle part;2.93550213248383e-93!GO:0044237;cellular metabolic process;4.0352882786233e-93!GO:0044238;primary metabolic process;2.57996692404292e-90!GO:0032991;macromolecular complex;1.25711423825063e-83!GO:0044444;cytoplasmic part;6.81077308287075e-82!GO:0003723;RNA binding;1.98022649895483e-77!GO:0005515;protein binding;5.86108985327928e-77!GO:0030529;ribonucleoprotein complex;4.73966997050058e-72!GO:0044428;nuclear part;5.37064014644322e-68!GO:0043283;biopolymer metabolic process;1.39557912869206e-65!GO:0010467;gene expression;7.85173226218386e-63!GO:0043233;organelle lumen;2.73635242398906e-57!GO:0031974;membrane-enclosed lumen;2.73635242398906e-57!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.87376701108962e-55!GO:0006412;translation;4.75025300118684e-49!GO:0019538;protein metabolic process;3.87093799983604e-48!GO:0006396;RNA processing;1.30518119011036e-45!GO:0044267;cellular protein metabolic process;4.63165558005539e-45!GO:0031981;nuclear lumen;1.00816108332281e-44!GO:0033036;macromolecule localization;4.16298475791365e-44!GO:0044260;cellular macromolecule metabolic process;4.95335396783486e-44!GO:0016071;mRNA metabolic process;3.916929610426e-43!GO:0015031;protein transport;1.96167861323518e-42!GO:0043234;protein complex;3.25558651821284e-42!GO:0045184;establishment of protein localization;4.44743161447264e-41!GO:0008104;protein localization;6.87880621741526e-40!GO:0003676;nucleic acid binding;6.87880621741526e-40!GO:0005840;ribosome;2.03402007860339e-38!GO:0008380;RNA splicing;5.30158772999683e-38!GO:0016043;cellular component organization and biogenesis;3.04065897804222e-36!GO:0006397;mRNA processing;5.33572710745073e-36!GO:0005739;mitochondrion;1.55970600201749e-35!GO:0005829;cytosol;2.0905658062417e-35!GO:0016070;RNA metabolic process;4.20399454337395e-35!GO:0003735;structural constituent of ribosome;1.7876555429663e-34!GO:0009059;macromolecule biosynthetic process;8.26496696431066e-34!GO:0033279;ribosomal subunit;8.33069414019731e-33!GO:0065003;macromolecular complex assembly;1.20298675377121e-31!GO:0031090;organelle membrane;6.01322246093156e-30!GO:0046907;intracellular transport;8.67158069493085e-30!GO:0044249;cellular biosynthetic process;1.54538065022863e-29!GO:0005654;nucleoplasm;4.7286809551829e-29!GO:0006886;intracellular protein transport;5.19219564837123e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.44138650034175e-29!GO:0006915;apoptosis;1.29923742836043e-28!GO:0012501;programmed cell death;1.7982113977817e-28!GO:0005681;spliceosome;2.3109286955019e-28!GO:0009058;biosynthetic process;4.24373031205039e-28!GO:0031967;organelle envelope;1.40528684678264e-27!GO:0022607;cellular component assembly;1.66053476868159e-27!GO:0031975;envelope;2.81965008606544e-27!GO:0008219;cell death;4.74698523965214e-27!GO:0016265;death;4.74698523965214e-27!GO:0044445;cytosolic part;1.20221260929537e-26!GO:0006259;DNA metabolic process;5.60197313874292e-26!GO:0044429;mitochondrial part;1.08100176315085e-25!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.55359085705703e-25!GO:0050794;regulation of cellular process;3.61015293637618e-25!GO:0000166;nucleotide binding;2.07790997444006e-24!GO:0044451;nucleoplasm part;7.65439444983841e-24!GO:0008134;transcription factor binding;1.32906559245094e-23!GO:0006996;organelle organization and biogenesis;2.65547834897524e-23!GO:0051649;establishment of cellular localization;4.89348120842756e-22!GO:0051641;cellular localization;1.0304700438198e-21!GO:0006512;ubiquitin cycle;1.03978882406877e-21!GO:0019941;modification-dependent protein catabolic process;3.95484933877171e-20!GO:0043632;modification-dependent macromolecule catabolic process;3.95484933877171e-20!GO:0051603;proteolysis involved in cellular protein catabolic process;5.89553559742432e-20!GO:0006511;ubiquitin-dependent protein catabolic process;7.17314028931512e-20!GO:0044257;cellular protein catabolic process;1.3275981741583e-19!GO:0042981;regulation of apoptosis;2.74661729587549e-19!GO:0050789;regulation of biological process;3.45291042080343e-19!GO:0043067;regulation of programmed cell death;6.74255657590667e-19!GO:0022618;protein-RNA complex assembly;1.29597250668917e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.36363274059103e-18!GO:0016462;pyrophosphatase activity;2.36363274059103e-18!GO:0017111;nucleoside-triphosphatase activity;2.87762391939611e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;2.90434941197677e-18!GO:0006119;oxidative phosphorylation;3.05309998694098e-18!GO:0043412;biopolymer modification;3.32241053061754e-18!GO:0044265;cellular macromolecule catabolic process;4.08094070732278e-18!GO:0019222;regulation of metabolic process;1.95931196990655e-17!GO:0015935;small ribosomal subunit;2.74949538958613e-17!GO:0016604;nuclear body;2.82512495814331e-17!GO:0005740;mitochondrial envelope;2.85341734835363e-17!GO:0019866;organelle inner membrane;3.02933918129982e-17!GO:0031966;mitochondrial membrane;5.24116596615681e-17!GO:0032553;ribonucleotide binding;5.97261521455298e-17!GO:0032555;purine ribonucleotide binding;5.97261521455298e-17!GO:0043285;biopolymer catabolic process;7.25534079141946e-17!GO:0015934;large ribosomal subunit;1.64300690180405e-16!GO:0048523;negative regulation of cellular process;2.79677362043751e-16!GO:0043228;non-membrane-bound organelle;3.17831347734712e-16!GO:0043232;intracellular non-membrane-bound organelle;3.17831347734712e-16!GO:0006464;protein modification process;4.74394061682955e-16!GO:0016874;ligase activity;5.09494925735526e-16!GO:0006605;protein targeting;5.9146068588034e-16!GO:0043687;post-translational protein modification;6.38195430278414e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.02044944068609e-16!GO:0017076;purine nucleotide binding;9.96034320997535e-16!GO:0006325;establishment and/or maintenance of chromatin architecture;1.92280566462543e-15!GO:0065007;biological regulation;1.93736238597842e-15!GO:0016607;nuclear speck;2.22168753518721e-15!GO:0007049;cell cycle;2.53438262527188e-15!GO:0003712;transcription cofactor activity;4.4452344415731e-15!GO:0005730;nucleolus;5.53491036873109e-15!GO:0005743;mitochondrial inner membrane;5.54933792333976e-15!GO:0006323;DNA packaging;7.86986527670437e-15!GO:0006913;nucleocytoplasmic transport;1.09408998309521e-14!GO:0044455;mitochondrial membrane part;1.14166357657715e-14!GO:0006366;transcription from RNA polymerase II promoter;1.33282793422998e-14!GO:0031323;regulation of cellular metabolic process;1.76034517916897e-14!GO:0030163;protein catabolic process;2.02790499995366e-14!GO:0051169;nuclear transport;2.27723750376901e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.8776280155084e-14!GO:0000502;proteasome complex (sensu Eukaryota);4.19046491205091e-14!GO:0008135;translation factor activity, nucleic acid binding;4.41328822181791e-14!GO:0048519;negative regulation of biological process;4.99272151619219e-14!GO:0051276;chromosome organization and biogenesis;6.13697973334033e-14!GO:0016192;vesicle-mediated transport;6.64959955970609e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;7.77349471445438e-14!GO:0000375;RNA splicing, via transesterification reactions;7.77349471445438e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.77349471445438e-14!GO:0009057;macromolecule catabolic process;1.69752246677342e-13!GO:0007243;protein kinase cascade;4.29077607661137e-13!GO:0043069;negative regulation of programmed cell death;6.74319453013166e-13!GO:0005524;ATP binding;7.10131486636886e-13!GO:0043066;negative regulation of apoptosis;8.51263027202053e-13!GO:0044248;cellular catabolic process;1.15654584886931e-12!GO:0006457;protein folding;1.30221618338542e-12!GO:0032559;adenyl ribonucleotide binding;1.46081510898698e-12!GO:0010468;regulation of gene expression;1.5482729289965e-12!GO:0006350;transcription;1.71913904201665e-12!GO:0006793;phosphorus metabolic process;3.97272670572518e-12!GO:0006796;phosphate metabolic process;3.97272670572518e-12!GO:0048770;pigment granule;4.72358052780432e-12!GO:0042470;melanosome;4.72358052780432e-12!GO:0005746;mitochondrial respiratory chain;4.87182068637509e-12!GO:0006413;translational initiation;5.18404397383682e-12!GO:0003743;translation initiation factor activity;5.95277583166468e-12!GO:0006974;response to DNA damage stimulus;1.31125831920561e-11!GO:0051726;regulation of cell cycle;1.41857339924694e-11!GO:0006916;anti-apoptosis;1.51059387559212e-11!GO:0030554;adenyl nucleotide binding;2.6489599603345e-11!GO:0051246;regulation of protein metabolic process;3.14814893520753e-11!GO:0000074;regulation of progression through cell cycle;3.14814893520753e-11!GO:0065004;protein-DNA complex assembly;3.55982415736464e-11!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.35862645495951e-11!GO:0006446;regulation of translational initiation;5.64873379865236e-11!GO:0004386;helicase activity;6.68389482660046e-11!GO:0050136;NADH dehydrogenase (quinone) activity;7.66451210756498e-11!GO:0003954;NADH dehydrogenase activity;7.66451210756498e-11!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.66451210756498e-11!GO:0042623;ATPase activity, coupled;8.63524730476052e-11!GO:0016310;phosphorylation;1.00028175639851e-10!GO:0016887;ATPase activity;1.11876318266747e-10!GO:0031980;mitochondrial lumen;1.26849913487107e-10!GO:0005759;mitochondrial matrix;1.26849913487107e-10!GO:0008639;small protein conjugating enzyme activity;1.35918124612639e-10!GO:0005635;nuclear envelope;1.49751798999629e-10!GO:0004842;ubiquitin-protein ligase activity;1.5694357430212e-10!GO:0002376;immune system process;1.58168654098521e-10!GO:0017038;protein import;1.81995320035363e-10!GO:0012505;endomembrane system;1.81995320035363e-10!GO:0022402;cell cycle process;1.855327354516e-10!GO:0016564;transcription repressor activity;2.05194882257683e-10!GO:0007242;intracellular signaling cascade;2.22159570520956e-10!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.01537224370244e-10!GO:0006333;chromatin assembly or disassembly;3.58007275808417e-10!GO:0031324;negative regulation of cellular metabolic process;5.50847690530447e-10!GO:0031965;nuclear membrane;6.11057532095978e-10!GO:0016568;chromatin modification;6.44590429488153e-10!GO:0032774;RNA biosynthetic process;7.03350707024589e-10!GO:0003713;transcription coactivator activity;7.16593005193436e-10!GO:0005768;endosome;7.60847078924065e-10!GO:0006351;transcription, DNA-dependent;8.17699609854712e-10!GO:0008026;ATP-dependent helicase activity;8.18552547481143e-10!GO:0007249;I-kappaB kinase/NF-kappaB cascade;8.93097229769993e-10!GO:0042775;organelle ATP synthesis coupled electron transport;9.53973180068523e-10!GO:0042773;ATP synthesis coupled electron transport;9.53973180068523e-10!GO:0050657;nucleic acid transport;1.07870448876325e-09!GO:0051236;establishment of RNA localization;1.07870448876325e-09!GO:0050658;RNA transport;1.07870448876325e-09!GO:0019787;small conjugating protein ligase activity;1.24091916115233e-09!GO:0016563;transcription activator activity;1.5616186984208e-09!GO:0005794;Golgi apparatus;1.69794127646523e-09!GO:0006403;RNA localization;1.74205806112507e-09!GO:0006950;response to stress;1.97179226620738e-09!GO:0006281;DNA repair;1.97179226620738e-09!GO:0045449;regulation of transcription;2.15912639078237e-09!GO:0044453;nuclear membrane part;3.11781436610286e-09!GO:0030964;NADH dehydrogenase complex (quinone);3.26908236004539e-09!GO:0045271;respiratory chain complex I;3.26908236004539e-09!GO:0005747;mitochondrial respiratory chain complex I;3.26908236004539e-09!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.4999568204922e-09!GO:0051082;unfolded protein binding;3.59097540863107e-09!GO:0065009;regulation of a molecular function;4.69099595103548e-09!GO:0000785;chromatin;5.39406339802061e-09!GO:0048522;positive regulation of cellular process;6.05617191632745e-09!GO:0019829;cation-transporting ATPase activity;6.05617191632745e-09!GO:0005694;chromosome;6.32829593258852e-09!GO:0009615;response to virus;6.44103395592717e-09!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;7.04125863531532e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.20895118363943e-09!GO:0048193;Golgi vesicle transport;7.31281792380576e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.41062334104573e-09!GO:0045786;negative regulation of progression through cell cycle;7.64315114401126e-09!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;8.40376050510919e-09!GO:0008565;protein transporter activity;9.50710452961861e-09!GO:0016481;negative regulation of transcription;1.20208928868316e-08!GO:0042254;ribosome biogenesis and assembly;1.2596825378011e-08!GO:0006417;regulation of translation;2.40598223504455e-08!GO:0006606;protein import into nucleus;2.42856181041342e-08!GO:0051170;nuclear import;2.65229937263342e-08!GO:0009892;negative regulation of metabolic process;3.27335245465939e-08!GO:0006164;purine nucleotide biosynthetic process;3.6370955434879e-08!GO:0005643;nuclear pore;3.7319838939771e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.80314603902374e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.24228051058723e-08!GO:0009260;ribonucleotide biosynthetic process;5.08367312480076e-08!GO:0051028;mRNA transport;5.22842445934561e-08!GO:0015986;ATP synthesis coupled proton transport;5.54176600350529e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.54176600350529e-08!GO:0006355;regulation of transcription, DNA-dependent;5.67847497554634e-08!GO:0016881;acid-amino acid ligase activity;5.7176302935988e-08!GO:0009152;purine ribonucleotide biosynthetic process;6.72970593839722e-08!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;8.00663574527557e-08!GO:0009259;ribonucleotide metabolic process;8.30490505283915e-08!GO:0003924;GTPase activity;9.38288622584686e-08!GO:0044427;chromosomal part;1.09124183505134e-07!GO:0006163;purine nucleotide metabolic process;1.15426247936907e-07!GO:0043065;positive regulation of apoptosis;1.32215263129329e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.5063657152943e-07!GO:0019899;enzyme binding;1.51008140421231e-07!GO:0065002;intracellular protein transport across a membrane;2.00874599893032e-07!GO:0006917;induction of apoptosis;2.18059703089788e-07!GO:0043068;positive regulation of programmed cell death;2.22889612023805e-07!GO:0009150;purine ribonucleotide metabolic process;2.38204441490395e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.86489912668159e-07!GO:0006461;protein complex assembly;2.87564447799552e-07!GO:0006334;nucleosome assembly;2.90789769206691e-07!GO:0005761;mitochondrial ribosome;2.96117340308524e-07!GO:0000313;organellar ribosome;2.96117340308524e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.4107027085428e-07!GO:0009719;response to endogenous stimulus;3.68954473072189e-07!GO:0012502;induction of programmed cell death;3.68954473072189e-07!GO:0009889;regulation of biosynthetic process;3.85374946080618e-07!GO:0003714;transcription corepressor activity;4.38567843382937e-07!GO:0051186;cofactor metabolic process;4.54767146009446e-07!GO:0005525;GTP binding;5.08950465308319e-07!GO:0048518;positive regulation of biological process;5.50618681618464e-07!GO:0031326;regulation of cellular biosynthetic process;5.91260474542816e-07!GO:0031497;chromatin assembly;6.47897198046189e-07!GO:0009142;nucleoside triphosphate biosynthetic process;6.75020466321387e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.75020466321387e-07!GO:0015078;hydrogen ion transmembrane transporter activity;7.13467827482612e-07!GO:0005793;ER-Golgi intermediate compartment;7.8829754358171e-07!GO:0005773;vacuole;8.1213748818566e-07!GO:0006754;ATP biosynthetic process;8.23903616354571e-07!GO:0006753;nucleoside phosphate metabolic process;8.23903616354571e-07!GO:0043566;structure-specific DNA binding;8.31734166060432e-07!GO:0005839;proteasome core complex (sensu Eukaryota);8.66265351872031e-07!GO:0032446;protein modification by small protein conjugation;9.27277115126041e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.12326603078475e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.12326603078475e-06!GO:0005770;late endosome;1.35903356417429e-06!GO:0004298;threonine endopeptidase activity;1.586244964132e-06!GO:0005783;endoplasmic reticulum;1.63015461745625e-06!GO:0009056;catabolic process;1.67233159161595e-06!GO:0016567;protein ubiquitination;1.92663858402459e-06!GO:0045321;leukocyte activation;2.0556246436224e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.12702671260401e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.17699955344062e-06!GO:0016072;rRNA metabolic process;2.19607064900701e-06!GO:0009060;aerobic respiration;2.28250059652433e-06!GO:0046930;pore complex;2.50622687538716e-06!GO:0006364;rRNA processing;2.5898589313863e-06!GO:0006732;coenzyme metabolic process;2.89603784122101e-06!GO:0000245;spliceosome assembly;3.30273662386638e-06!GO:0032561;guanyl ribonucleotide binding;3.45761474948745e-06!GO:0019001;guanyl nucleotide binding;3.45761474948745e-06!GO:0050790;regulation of catalytic activity;3.73840233323268e-06!GO:0016787;hydrolase activity;3.73840233323268e-06!GO:0003677;DNA binding;3.89948824529921e-06!GO:0008270;zinc ion binding;4.35256066003517e-06!GO:0046649;lymphocyte activation;4.94085468019066e-06!GO:0006955;immune response;5.40291278612711e-06!GO:0007264;small GTPase mediated signal transduction;5.46631622381497e-06!GO:0045259;proton-transporting ATP synthase complex;5.61819020033432e-06!GO:0009199;ribonucleoside triphosphate metabolic process;6.01172025695162e-06!GO:0051168;nuclear export;6.14956107155669e-06!GO:0003697;single-stranded DNA binding;6.60488417059424e-06!GO:0030097;hemopoiesis;6.91552901396369e-06!GO:0044440;endosomal part;7.41775922025046e-06!GO:0010008;endosome membrane;7.41775922025046e-06!GO:0009141;nucleoside triphosphate metabolic process;8.69177086177089e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;8.72641552060809e-06!GO:0000323;lytic vacuole;8.89096095638879e-06!GO:0005764;lysosome;8.89096095638879e-06!GO:0006260;DNA replication;9.41227121143729e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;9.59202109907766e-06!GO:0009144;purine nucleoside triphosphate metabolic process;9.59202109907766e-06!GO:0016197;endosome transport;1.0408865867942e-05!GO:0009967;positive regulation of signal transduction;1.18847788203223e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.31132438044372e-05!GO:0046034;ATP metabolic process;1.36471720105424e-05!GO:0048468;cell development;1.36995324537563e-05!GO:0045333;cellular respiration;1.61841689963648e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.71429692920882e-05!GO:0009607;response to biotic stimulus;1.89461993715489e-05!GO:0006613;cotranslational protein targeting to membrane;2.13038686098499e-05!GO:0016363;nuclear matrix;2.1810072550644e-05!GO:0006888;ER to Golgi vesicle-mediated transport;2.18841814232091e-05!GO:0001775;cell activation;2.50450566698664e-05!GO:0051427;hormone receptor binding;2.50450566698664e-05!GO:0003724;RNA helicase activity;2.58494740502724e-05!GO:0030099;myeloid cell differentiation;2.74732869677239e-05!GO:0000151;ubiquitin ligase complex;2.79665342147457e-05!GO:0051188;cofactor biosynthetic process;3.02959192335615e-05!GO:0044432;endoplasmic reticulum part;3.08721902918083e-05!GO:0000278;mitotic cell cycle;3.48747070581507e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.60096093283188e-05!GO:0042110;T cell activation;3.6176306556232e-05!GO:0045892;negative regulation of transcription, DNA-dependent;3.81045149444769e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;3.84884473469276e-05!GO:0048475;coated membrane;4.07470605492503e-05!GO:0030117;membrane coat;4.07470605492503e-05!GO:0006401;RNA catabolic process;4.25630995169124e-05!GO:0006402;mRNA catabolic process;4.83650766368166e-05!GO:0035257;nuclear hormone receptor binding;4.83650766368166e-05!GO:0007050;cell cycle arrest;5.39227634803251e-05!GO:0030120;vesicle coat;5.39417513492778e-05!GO:0030662;coated vesicle membrane;5.39417513492778e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;5.41732036783282e-05!GO:0015399;primary active transmembrane transporter activity;5.41732036783282e-05!GO:0008047;enzyme activator activity;5.53989732520196e-05!GO:0009055;electron carrier activity;6.62628968652689e-05!GO:0002520;immune system development;6.70206738808179e-05!GO:0003729;mRNA binding;7.61085498363061e-05!GO:0006399;tRNA metabolic process;7.74073167773462e-05!GO:0005667;transcription factor complex;7.74073167773462e-05!GO:0009108;coenzyme biosynthetic process;7.94300717876706e-05!GO:0004674;protein serine/threonine kinase activity;8.17696224777733e-05!GO:0016779;nucleotidyltransferase activity;8.25215301506544e-05!GO:0016740;transferase activity;8.74965760603276e-05!GO:0005813;centrosome;9.67313599572318e-05!GO:0060090;molecular adaptor activity;0.000104191460948712!GO:0008654;phospholipid biosynthetic process;0.000106891668796694!GO:0008234;cysteine-type peptidase activity;0.000109808257814516!GO:0009966;regulation of signal transduction;0.00014981922845943!GO:0006752;group transfer coenzyme metabolic process;0.000150485341936099!GO:0006099;tricarboxylic acid cycle;0.000161129747006277!GO:0046356;acetyl-CoA catabolic process;0.000161129747006277!GO:0009117;nucleotide metabolic process;0.000164055337822394!GO:0005769;early endosome;0.000167515671227087!GO:0051789;response to protein stimulus;0.000190166887368328!GO:0006986;response to unfolded protein;0.000190166887368328!GO:0007005;mitochondrion organization and biogenesis;0.000190942230091679!GO:0031252;leading edge;0.000191854416496666!GO:0031982;vesicle;0.000207318238001258!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.000207318238001258!GO:0048471;perinuclear region of cytoplasm;0.000223627037222031!GO:0008632;apoptotic program;0.000233735161663692!GO:0016044;membrane organization and biogenesis;0.000261059084597692!GO:0048534;hemopoietic or lymphoid organ development;0.000295700208393311!GO:0030218;erythrocyte differentiation;0.000298304023007454!GO:0030695;GTPase regulator activity;0.000329150128277312!GO:0005815;microtubule organizing center;0.000329150128277312!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000339278096909718!GO:0006612;protein targeting to membrane;0.000348891290082248!GO:0005789;endoplasmic reticulum membrane;0.000350926745194372!GO:0043623;cellular protein complex assembly;0.000361919727459515!GO:0045637;regulation of myeloid cell differentiation;0.000368751198676309!GO:0046914;transition metal ion binding;0.000370018124988632!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000395407179241094!GO:0006352;transcription initiation;0.000405643855394842!GO:0008186;RNA-dependent ATPase activity;0.000440796225917685!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000464705397763287!GO:0004812;aminoacyl-tRNA ligase activity;0.000464705397763287!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000464705397763287!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000501330797164988!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00052837336926757!GO:0000786;nucleosome;0.000530037267833839!GO:0005096;GTPase activator activity;0.000549031920712475!GO:0043549;regulation of kinase activity;0.000603449913810137!GO:0006084;acetyl-CoA metabolic process;0.000611109514223139!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.000617715789650728!GO:0009893;positive regulation of metabolic process;0.000633758762725923!GO:0031410;cytoplasmic vesicle;0.00063973158322233!GO:0005774;vacuolar membrane;0.000649662909132418!GO:0043038;amino acid activation;0.00068510393810539!GO:0006418;tRNA aminoacylation for protein translation;0.00068510393810539!GO:0043039;tRNA aminoacylation;0.00068510393810539!GO:0006261;DNA-dependent DNA replication;0.000706691568569465!GO:0007265;Ras protein signal transduction;0.000742060000573247!GO:0019221;cytokine and chemokine mediated signaling pathway;0.000743678605599131!GO:0051338;regulation of transferase activity;0.000746653461578475!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000765187417842816!GO:0045859;regulation of protein kinase activity;0.000804852066083776!GO:0043021;ribonucleoprotein binding;0.000827491050578635!GO:0003690;double-stranded DNA binding;0.00086002933315655!GO:0005057;receptor signaling protein activity;0.000881281932426959!GO:0005070;SH3/SH2 adaptor activity;0.00088863361791829!GO:0042802;identical protein binding;0.000895435535589445!GO:0022415;viral reproductive process;0.000902915801960245!GO:0043492;ATPase activity, coupled to movement of substances;0.000972205769549191!GO:0031988;membrane-bound vesicle;0.00101539186672246!GO:0019843;rRNA binding;0.00101977654045737!GO:0046983;protein dimerization activity;0.00103509265096817!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00106941187092237!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00111613894223471!GO:0051251;positive regulation of lymphocyte activation;0.00111613894223471!GO:0009109;coenzyme catabolic process;0.00114217177117609!GO:0004004;ATP-dependent RNA helicase activity;0.00121375649489607!GO:0006818;hydrogen transport;0.0013415841077115!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00134758161738189!GO:0051090;regulation of transcription factor activity;0.0013627300413201!GO:0003725;double-stranded RNA binding;0.00139955122428033!GO:0001819;positive regulation of cytokine production;0.00155188717530974!GO:0015992;proton transport;0.0015576389528337!GO:0005885;Arp2/3 protein complex;0.00157428686391197!GO:0051187;cofactor catabolic process;0.0015834188418118!GO:0051329;interphase of mitotic cell cycle;0.00159367168093147!GO:0002521;leukocyte differentiation;0.00159942494245994!GO:0045941;positive regulation of transcription;0.00162153190572894!GO:0005083;small GTPase regulator activity;0.00182641744002391!GO:0006405;RNA export from nucleus;0.0018936089299234!GO:0044437;vacuolar part;0.00191028087222632!GO:0030384;phosphoinositide metabolic process;0.00193326165610249!GO:0051336;regulation of hydrolase activity;0.0019518740879917!GO:0031902;late endosome membrane;0.00198138170592833!GO:0015630;microtubule cytoskeleton;0.00199537671465155!GO:0016023;cytoplasmic membrane-bound vesicle;0.00202336498649585!GO:0009165;nucleotide biosynthetic process;0.00205324172768157!GO:0046822;regulation of nucleocytoplasmic transport;0.00205324172768157!GO:0005765;lysosomal membrane;0.00229174175705055!GO:0046966;thyroid hormone receptor binding;0.00232350617919214!GO:0033673;negative regulation of kinase activity;0.00236165607388475!GO:0006469;negative regulation of protein kinase activity;0.00236165607388475!GO:0051059;NF-kappaB binding;0.00237157979793248!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00239729834384534!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00239729834384534!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00239729834384534!GO:0002757;immune response-activating signal transduction;0.00245757489225933!GO:0019783;small conjugating protein-specific protease activity;0.00247291357811655!GO:0007259;JAK-STAT cascade;0.00251890976484165!GO:0031072;heat shock protein binding;0.0025834104576546!GO:0002764;immune response-regulating signal transduction;0.00262517806662887!GO:0048500;signal recognition particle;0.00281083378837715!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00308396970687542!GO:0043433;negative regulation of transcription factor activity;0.00310910674994533!GO:0006891;intra-Golgi vesicle-mediated transport;0.00321154839466303!GO:0022890;inorganic cation transmembrane transporter activity;0.00336505833802753!GO:0015631;tubulin binding;0.00338207067682521!GO:0046467;membrane lipid biosynthetic process;0.00338934422997086!GO:0002429;immune response-activating cell surface receptor signaling pathway;0.00357298412784523!GO:0006310;DNA recombination;0.00371485432506016!GO:0033116;ER-Golgi intermediate compartment membrane;0.00373807989629293!GO:0004843;ubiquitin-specific protease activity;0.00375372940463546!GO:0002768;immune response-regulating cell surface receptor signaling pathway;0.00383625577132361!GO:0005762;mitochondrial large ribosomal subunit;0.00408528931773394!GO:0000315;organellar large ribosomal subunit;0.00408528931773394!GO:0045893;positive regulation of transcription, DNA-dependent;0.00408579272539382!GO:0006897;endocytosis;0.00409078564929346!GO:0010324;membrane invagination;0.00409078564929346!GO:0051707;response to other organism;0.00411841658157133!GO:0001726;ruffle;0.00420692312267728!GO:0030036;actin cytoskeleton organization and biogenesis;0.00433731480118227!GO:0016251;general RNA polymerase II transcription factor activity;0.00436513993233788!GO:0031325;positive regulation of cellular metabolic process;0.0044043341442753!GO:0046519;sphingoid metabolic process;0.0044043341442753!GO:0032940;secretion by cell;0.00448046503592882!GO:0022403;cell cycle phase;0.00448046503592882!GO:0046474;glycerophospholipid biosynthetic process;0.00456585170572926!GO:0006414;translational elongation;0.00458079430143014!GO:0006611;protein export from nucleus;0.00465063594108358!GO:0006650;glycerophospholipid metabolic process;0.00471719185533814!GO:0051348;negative regulation of transferase activity;0.00471719185533814!GO:0006672;ceramide metabolic process;0.00479406612546708!GO:0051252;regulation of RNA metabolic process;0.00480350290751057!GO:0045646;regulation of erythrocyte differentiation;0.00480384064565913!GO:0030521;androgen receptor signaling pathway;0.00488187361809469!GO:0044431;Golgi apparatus part;0.00489999239868292!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00493613651166707!GO:0005637;nuclear inner membrane;0.00495155529177385!GO:0051087;chaperone binding;0.00499147043967573!GO:0030968;unfolded protein response;0.00499147043967573!GO:0051325;interphase;0.00513445673699284!GO:0008139;nuclear localization sequence binding;0.00549752781547687!GO:0043681;protein import into mitochondrion;0.00563691409167573!GO:0051223;regulation of protein transport;0.00564814408342076!GO:0006607;NLS-bearing substrate import into nucleus;0.00573484373968115!GO:0030518;steroid hormone receptor signaling pathway;0.00576275725066553!GO:0005798;Golgi-associated vesicle;0.0058258420039665!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00591191959408938!GO:0001816;cytokine production;0.00604338833498853!GO:0001772;immunological synapse;0.00614155171341348!GO:0004221;ubiquitin thiolesterase activity;0.00618667020368252!GO:0005684;U2-dependent spliceosome;0.00639650192781972!GO:0031625;ubiquitin protein ligase binding;0.00650675023362487!GO:0003684;damaged DNA binding;0.00650675023362487!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00661332106307002!GO:0045047;protein targeting to ER;0.00661332106307002!GO:0030658;transport vesicle membrane;0.00661332106307002!GO:0006468;protein amino acid phosphorylation;0.0070182357570221!GO:0031901;early endosome membrane;0.00720017770294932!GO:0000082;G1/S transition of mitotic cell cycle;0.00723670888577175!GO:0019079;viral genome replication;0.00740139916596215!GO:0006984;ER-nuclear signaling pathway;0.00747181013143973!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00758372023282036!GO:0046489;phosphoinositide biosynthetic process;0.00758417692306873!GO:0005741;mitochondrial outer membrane;0.00760835587154887!GO:0003899;DNA-directed RNA polymerase activity;0.00766975860465478!GO:0048487;beta-tubulin binding;0.00775253739573345!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00786150321053391!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00786150321053391!GO:0007034;vacuolar transport;0.00786150321053391!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00797579283621515!GO:0018193;peptidyl-amino acid modification;0.0080853317070859!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00823655219046534!GO:0030118;clathrin coat;0.00845967134935402!GO:0005869;dynactin complex;0.00859989460258171!GO:0001817;regulation of cytokine production;0.00866104351700131!GO:0004527;exonuclease activity;0.00875201395084711!GO:0008312;7S RNA binding;0.00880929408177878!GO:0006383;transcription from RNA polymerase III promoter;0.00882368807016686!GO:0043488;regulation of mRNA stability;0.00886184949171399!GO:0043487;regulation of RNA stability;0.00886184949171399!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00922554105470585!GO:0042113;B cell activation;0.0093626695047437!GO:0030433;ER-associated protein catabolic process;0.00954742613878012!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.00954742613878012!GO:0006643;membrane lipid metabolic process;0.00966262111909087!GO:0016301;kinase activity;0.00983587355235314!GO:0043281;regulation of caspase activity;0.0102974632370428!GO:0006626;protein targeting to mitochondrion;0.0105608106296633!GO:0000314;organellar small ribosomal subunit;0.010599059508608!GO:0005763;mitochondrial small ribosomal subunit;0.010599059508608!GO:0051092;activation of NF-kappaB transcription factor;0.0109694935790914!GO:0006919;caspase activation;0.0112271438514603!GO:0043022;ribosome binding;0.0115286440498956!GO:0043087;regulation of GTPase activity;0.011583332923877!GO:0002262;myeloid cell homeostasis;0.011978038190184!GO:0051052;regulation of DNA metabolic process;0.0121563433686898!GO:0016272;prefoldin complex;0.0122053656902577!GO:0001562;response to protozoan;0.0123600467210567!GO:0031968;organelle outer membrane;0.0128856059965737!GO:0050900;leukocyte migration;0.0129553751164322!GO:0005048;signal sequence binding;0.0129553751164322!GO:0045045;secretory pathway;0.0132775233285771!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0136137677606932!GO:0003711;transcription elongation regulator activity;0.0140258343071144!GO:0016859;cis-trans isomerase activity;0.0141132099360508!GO:0005669;transcription factor TFIID complex;0.0146288667532025!GO:0019867;outer membrane;0.014660242665992!GO:0050870;positive regulation of T cell activation;0.0147586151779405!GO:0016311;dephosphorylation;0.0148402888336821!GO:0045454;cell redox homeostasis;0.0150138004297519!GO:0006376;mRNA splice site selection;0.0155922829374821!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0155922829374821!GO:0030522;intracellular receptor-mediated signaling pathway;0.0158568279662527!GO:0008287;protein serine/threonine phosphatase complex;0.0160081353778488!GO:0016584;nucleosome positioning;0.0161327785178825!GO:0030660;Golgi-associated vesicle membrane;0.0163405695410032!GO:0019210;kinase inhibitor activity;0.016356384467965!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0163610023817574!GO:0005099;Ras GTPase activator activity;0.0164223682477013!GO:0043621;protein self-association;0.0166179538238242!GO:0030258;lipid modification;0.0176100628903814!GO:0008017;microtubule binding;0.0176974834512187!GO:0050851;antigen receptor-mediated signaling pathway;0.0177104581112817!GO:0050865;regulation of cell activation;0.0177104581112817!GO:0008097;5S rRNA binding;0.0177341298708404!GO:0030217;T cell differentiation;0.0180084070188816!GO:0051920;peroxiredoxin activity;0.0181424421579053!GO:0019058;viral infectious cycle;0.0181424421579053!GO:0033157;regulation of intracellular protein transport;0.0185981020775997!GO:0042306;regulation of protein import into nucleus;0.0185981020775997!GO:0017091;AU-rich element binding;0.0187624061211563!GO:0050779;RNA destabilization;0.0187624061211563!GO:0000289;poly(A) tail shortening;0.0187624061211563!GO:0030867;rough endoplasmic reticulum membrane;0.0187624061211563!GO:0043280;positive regulation of caspase activity;0.0187624061211563!GO:0030100;regulation of endocytosis;0.0194509408795017!GO:0004860;protein kinase inhibitor activity;0.0194684557895089!GO:0051098;regulation of binding;0.019792034000864!GO:0009116;nucleoside metabolic process;0.0200328634724002!GO:0007041;lysosomal transport;0.0201537469133312!GO:0030041;actin filament polymerization;0.0209477909026005!GO:0051249;regulation of lymphocyte activation;0.0215082262363242!GO:0030098;lymphocyte differentiation;0.0216651434352776!GO:0044452;nucleolar part;0.0218005435572781!GO:0008320;protein transmembrane transporter activity;0.0218512004101712!GO:0051101;regulation of DNA binding;0.0218905587662944!GO:0030127;COPII vesicle coat;0.0222406043278488!GO:0012507;ER to Golgi transport vesicle membrane;0.0222406043278488!GO:0022411;cellular component disassembly;0.0227262464528534!GO:0050871;positive regulation of B cell activation;0.0227262464528534!GO:0048872;homeostasis of number of cells;0.0231586928371652!GO:0030029;actin filament-based process;0.0231762569798615!GO:0048146;positive regulation of fibroblast proliferation;0.0233422406212222!GO:0004197;cysteine-type endopeptidase activity;0.0235540137647906!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0238317199658041!GO:0000118;histone deacetylase complex;0.0245488155611799!GO:0008383;manganese superoxide dismutase activity;0.0247816525796282!GO:0001315;age-dependent response to reactive oxygen species;0.0247816525796282!GO:0003682;chromatin binding;0.0249567031846438!GO:0008637;apoptotic mitochondrial changes;0.0253475104529706!GO:0000049;tRNA binding;0.0259404251511592!GO:0003702;RNA polymerase II transcription factor activity;0.0261713071834346!GO:0016790;thiolester hydrolase activity;0.027270324257387!GO:0043407;negative regulation of MAP kinase activity;0.0272898777675089!GO:0003678;DNA helicase activity;0.0272941478567429!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0277796969201363!GO:0022884;macromolecule transmembrane transporter activity;0.0281078559735687!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0281078559735687!GO:0008624;induction of apoptosis by extracellular signals;0.0284685535927627!GO:0006354;RNA elongation;0.0284685535927627!GO:0035258;steroid hormone receptor binding;0.0288532305540283!GO:0045792;negative regulation of cell size;0.0291945923434035!GO:0047485;protein N-terminus binding;0.0294615761340472!GO:0033367;protein localization in mast cell secretory granule;0.0294615761340472!GO:0033365;protein localization in organelle;0.0294615761340472!GO:0033371;T cell secretory granule organization and biogenesis;0.0294615761340472!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.0294615761340472!GO:0033375;protease localization in T cell secretory granule;0.0294615761340472!GO:0042629;mast cell granule;0.0294615761340472!GO:0033377;maintenance of protein localization in T cell secretory granule;0.0294615761340472!GO:0033364;mast cell secretory granule organization and biogenesis;0.0294615761340472!GO:0033380;granzyme B localization in T cell secretory granule;0.0294615761340472!GO:0033379;maintenance of protease localization in T cell secretory granule;0.0294615761340472!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.0294615761340472!GO:0033368;protease localization in mast cell secretory granule;0.0294615761340472!GO:0033366;protein localization in secretory granule;0.0294615761340472!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.0294615761340472!GO:0033374;protein localization in T cell secretory granule;0.0294615761340472!GO:0016605;PML body;0.0296975035118791!GO:0050671;positive regulation of lymphocyte proliferation;0.0296975035118791!GO:0032946;positive regulation of mononuclear cell proliferation;0.0296975035118791!GO:0000087;M phase of mitotic cell cycle;0.0304379392556407!GO:0019904;protein domain specific binding;0.0306359168472876!GO:0007006;mitochondrial membrane organization and biogenesis;0.0314368332429159!GO:0006338;chromatin remodeling;0.0315817185982095!GO:0048144;fibroblast proliferation;0.032008174457352!GO:0048145;regulation of fibroblast proliferation;0.032008174457352!GO:0003746;translation elongation factor activity;0.032008174457352!GO:0051091;positive regulation of transcription factor activity;0.032008174457352!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.032008174457352!GO:0015002;heme-copper terminal oxidase activity;0.032008174457352!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.032008174457352!GO:0004129;cytochrome-c oxidase activity;0.032008174457352!GO:0008168;methyltransferase activity;0.0323113997432636!GO:0000209;protein polyubiquitination;0.0326294217181316!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0326681787197992!GO:0001776;leukocyte homeostasis;0.0330035624198554!GO:0004715;non-membrane spanning protein tyrosine kinase activity;0.0330244601476968!GO:0030134;ER to Golgi transport vesicle;0.0330808922821665!GO:0005149;interleukin-1 receptor binding;0.0331240366856784!GO:0019220;regulation of phosphate metabolic process;0.0332151486349896!GO:0051174;regulation of phosphorus metabolic process;0.0332151486349896!GO:0030119;AP-type membrane coat adaptor complex;0.0336975035572654!GO:0045746;negative regulation of Notch signaling pathway;0.0337834272456903!GO:0045638;negative regulation of myeloid cell differentiation;0.0338407332871965!GO:0051301;cell division;0.0342390660115984!GO:0006595;polyamine metabolic process;0.0344451203153866!GO:0005657;replication fork;0.0344472837171311!GO:0030308;negative regulation of cell growth;0.0346447578829372!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.035419609317193!GO:0032508;DNA duplex unwinding;0.0356014378401197!GO:0032392;DNA geometric change;0.0356014378401197!GO:0006661;phosphatidylinositol biosynthetic process;0.0358745765858286!GO:0008276;protein methyltransferase activity;0.0358766841783424!GO:0000303;response to superoxide;0.036380197649496!GO:0007067;mitosis;0.0363878185824933!GO:0042832;defense response to protozoan;0.0368492145477481!GO:0000139;Golgi membrane;0.0371697673575332!GO:0006301;postreplication repair;0.0373043853778179!GO:0050755;chemokine metabolic process;0.0373668350761032!GO:0042033;chemokine biosynthetic process;0.0373668350761032!GO:0032602;chemokine production;0.0373668350761032!GO:0050811;GABA receptor binding;0.0376997969011197!GO:0046854;phosphoinositide phosphorylation;0.0380554130727944!GO:0005791;rough endoplasmic reticulum;0.0388611687180425!GO:0030663;COPI coated vesicle membrane;0.0394805855027886!GO:0030126;COPI vesicle coat;0.0394805855027886!GO:0006302;double-strand break repair;0.0394805855027886!GO:0019901;protein kinase binding;0.0396488122425869!GO:0030131;clathrin adaptor complex;0.0398534083784947!GO:0042990;regulation of transcription factor import into nucleus;0.0398534083784947!GO:0042991;transcription factor import into nucleus;0.0398534083784947!GO:0001516;prostaglandin biosynthetic process;0.0402549541056159!GO:0046457;prostanoid biosynthetic process;0.0402549541056159!GO:0016741;transferase activity, transferring one-carbon groups;0.0402549541056159!GO:0032318;regulation of Ras GTPase activity;0.0404336426641087!GO:0016566;specific transcriptional repressor activity;0.0407524341401623!GO:0000119;mediator complex;0.0407904498068844!GO:0006406;mRNA export from nucleus;0.0416026011762074!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0420699698484875!GO:0008629;induction of apoptosis by intracellular signals;0.0426879380972301!GO:0002274;myeloid leukocyte activation;0.0427003097843545!GO:0004576;oligosaccharyl transferase activity;0.0427003097843545!GO:0016279;protein-lysine N-methyltransferase activity;0.0427763124777074!GO:0018024;histone-lysine N-methyltransferase activity;0.0427763124777074!GO:0016278;lysine N-methyltransferase activity;0.0427763124777074!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.0430924437927901!GO:0015980;energy derivation by oxidation of organic compounds;0.046856440778859!GO:0005832;chaperonin-containing T-complex;0.0476571071011421!GO:0000738;DNA catabolic process, exonucleolytic;0.047810760652619!GO:0033549;MAP kinase phosphatase activity;0.0482398252970042!GO:0017017;MAP kinase tyrosine/serine/threonine phosphatase activity;0.0482398252970042!GO:0002440;production of molecular mediator of immune response;0.0485884682543641!GO:0000287;magnesium ion binding;0.0489074511177335!GO:0051540;metal cluster binding;0.0492727974598699!GO:0051536;iron-sulfur cluster binding;0.0492727974598699 | |||
|sample_id=11625 | |sample_id=11625 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=blood | |sample_tissue=blood | ||
|top_motifs=NFKB1_REL_RELA:3.49165616177;PAX3,7:3.34469960627;CREB1:2.81906102002;ATF4:2.81665042692;RUNX1..3:2.76665306001;PAX2:2.75137371255;ATF5_CREB3:2.58296618572;RORA:2.2722722791;FOXN1:2.18328780784;TGIF1:2.17296603564;DMAP1_NCOR{1,2}_SMARC:2.15560826902;ELF1,2,4:2.14572103122;ETS1,2:2.11221567456;SPI1:2.01685703535;JUN:2.00466441719;NFATC1..3:1.99093247999;SPIB:1.95986295872;FOS_FOS{B,L1}_JUN{B,D}:1.92866781929;NFE2:1.88296239433;FOSL2:1.85091555394;FOX{D1,D2}:1.82145536057;NANOG{mouse}:1.81807959481;IRF1,2:1.78002787728;HIF1A:1.72881164524;BACH2:1.72518185725;NFIL3:1.7216495131;ATF2:1.50907437316;TLX2:1.50575586197;IRF7:1.40489207137;NKX2-1,4:1.38643233409;STAT1,3:1.3475456465;TBX4,5:1.31209365948;STAT2,4,6:1.31093456241;GATA6:1.28816136801;HLF:1.22801660751;HMX1:1.17781003352;MYB:1.16588463726;RFX2..5_RFXANK_RFXAP:1.15174894266;ATF6:1.15053661588;BPTF:1.10314914179;FOXP3:1.06384510416;POU2F1..3:0.943285021988;NFE2L1:0.902920835499;XBP1:0.854728244075;FOXO1,3,4:0.84535645322;RXRA_VDR{dimer}:0.829630461141;BREu{core}:0.795206422142;CEBPA,B_DDIT3:0.791637491906;PAX6:0.745258766837;HSF1,2:0.732547416578;MAFB:0.726896074185;PAX8:0.673322778604;SREBF1,2:0.634415558193;NFE2L2:0.623302772104;PDX1:0.554060180149;FOX{F1,F2,J1}:0.528256354908;TBP:0.497270407865;RBPJ:0.47432762822;EGR1..3:0.442574875329;SOX2:0.435303571041;NANOG:0.396740150035;HBP1_HMGB_SSRP1_UBTF:0.302595791788;MEF2{A,B,C,D}:0.299420424042;CRX:0.29258661173;SMAD1..7,9:0.185072468566;ESR1:0.183003526826;RFX1:0.16641628531;EP300:0.143753058202;GLI1..3:0.126441266798;HMGA1,2:0.102142430331;MYOD1:0.0868258567633;CDX1,2,4:0.0105248013416;OCT4_SOX2{dimer}:0.00680064697922;PRRX1,2:-0.0672617407575;AHR_ARNT_ARNT2:-0.149852794751;POU5F1:-0.173545516196;ELK1,4_GABP{A,B1}:-0.181639300743;FOX{I1,J2}:-0.184680356275;HES1:-0.189309971875;E2F1..5:-0.19689142125;CUX2:-0.210361593802;PAX4:-0.21834674568;DBP:-0.234366540763;STAT5{A,B}:-0.261001643105;NHLH1,2:-0.265910149556;ZEB1:-0.289831303523;PBX1:-0.293485016236;MED-1{core}:-0.293543908498;FOXP1:-0.29833478636;NFY{A,B,C}:-0.336276389606;RXR{A,B,G}:-0.341497771736;SRF:-0.357062468886;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.363151603538;MZF1:-0.363693696937;IKZF2:-0.396781787382;TFAP2{A,C}:-0.407412379545;MYFfamily:-0.413448847604;PATZ1:-0.427783009333;LEF1_TCF7_TCF7L1,2:-0.433150381986;TFDP1:-0.435413770534;TFAP2B:-0.462048695273;ZNF148:-0.494399680203;REST:-0.527036584732;SOX17:-0.535280294041;ZFP161:-0.542641428546;ZNF238:-0.546947080808;MTE{core}:-0.571061023604;NR5A1,2:-0.572729626167;ALX1:-0.59643407118;SOX{8,9,10}:-0.605310181938;VSX1,2:-0.651241995776;ZBTB16:-0.654321922465;HOXA9_MEIS1:-0.672905552637;EN1,2:-0.728644633336;HNF1A:-0.728727998639;YY1:-0.743436979902;HNF4A_NR2F1,2:-0.75459561026;MAZ:-0.780681218848;SP1:-0.826078931664;PITX1..3:-0.857371975813;PAX5:-0.869802538696;GCM1,2:-0.891601158341;GZF1:-0.892102420364;TAL1_TCF{3,4,12}:-0.896885071242;HIC1:-0.898661271577;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.899461129746;FOXA2:-0.921707575955;FOXL1:-0.922008037494;SNAI1..3:-0.944907203393;TFCP2:-0.962865201187;T:-0.965743937949;ZNF384:-0.966323803754;bHLH_family:-1.00683632569;NKX6-1,2:-1.0148297261;AR:-1.01903570145;LMO2:-1.0445528443;EBF1:-1.04541785169;TFAP4:-1.04931068497;SOX5:-1.07611251212;RREB1:-1.09412518794;AIRE:-1.11374600644;NRF1:-1.11375154998;NKX2-3_NKX2-5:-1.12268118642;ZBTB6:-1.14003538387;NR6A1:-1.15050216172;MTF1:-1.15539354511;MYBL2:-1.19035013816;ESRRA:-1.20838947721;TLX1..3_NFIC{dimer}:-1.21302961966;ALX4:-1.22480495873;XCPE1{core}:-1.24572360812;GTF2I:-1.25435686519;HOX{A6,A7,B6,B7}:-1.26610069748;ZNF423:-1.27483857303;ADNP_IRX_SIX_ZHX:-1.31807173342;POU3F1..4:-1.32089240184;NKX3-1:-1.32966692266;GFI1:-1.33379345346;FOXQ1:-1.35988452021;GTF2A1,2:-1.4066379937;HOX{A5,B5}:-1.42955265485;ZNF143:-1.43238421041;PRDM1:-1.44643090243;GATA4:-1.47248455439;NR1H4:-1.47594259259;TEAD1:-1.48620246414;NFIX:-1.50159775874;PPARG:-1.53773966936;TP53:-1.55323922612;POU6F1:-1.57692433898;HAND1,2:-1.58007683472;ZIC1..3:-1.58189836732;CDC5L:-1.62445730582;FOXM1:-1.63070153157;EVI1:-1.64545990056;LHX3,4:-1.65033562787;NKX2-2,8:-1.72228347239;HOX{A4,D4}:-1.81094382754;TEF:-1.93092728007;IKZF1:-1.93098612306;GFI1B:-1.96404196734;ARID5B:-2.03811815614;PAX1,9:-2.03843470537;NR3C1:-2.21048510634;UFEwm:-2.40079665738;FOXD3:-2.43349292034;SPZ1:-2.47064153068;KLF4:-2.4948016436;TOPORS:-2.54316794039;POU1F1:-2.57563564231;ONECUT1,2:-2.59755040827;NKX3-2:-2.61779291549 | |top_motifs=NFKB1_REL_RELA:3.49165616177;PAX3,7:3.34469960627;CREB1:2.81906102002;ATF4:2.81665042692;RUNX1..3:2.76665306001;PAX2:2.75137371255;ATF5_CREB3:2.58296618572;RORA:2.2722722791;FOXN1:2.18328780784;TGIF1:2.17296603564;DMAP1_NCOR{1,2}_SMARC:2.15560826902;ELF1,2,4:2.14572103122;ETS1,2:2.11221567456;SPI1:2.01685703535;JUN:2.00466441719;NFATC1..3:1.99093247999;SPIB:1.95986295872;FOS_FOS{B,L1}_JUN{B,D}:1.92866781929;NFE2:1.88296239433;FOSL2:1.85091555394;FOX{D1,D2}:1.82145536057;NANOG{mouse}:1.81807959481;IRF1,2:1.78002787728;HIF1A:1.72881164524;BACH2:1.72518185725;NFIL3:1.7216495131;ATF2:1.50907437316;TLX2:1.50575586197;IRF7:1.40489207137;NKX2-1,4:1.38643233409;STAT1,3:1.3475456465;TBX4,5:1.31209365948;STAT2,4,6:1.31093456241;GATA6:1.28816136801;HLF:1.22801660751;HMX1:1.17781003352;MYB:1.16588463726;RFX2..5_RFXANK_RFXAP:1.15174894266;ATF6:1.15053661588;BPTF:1.10314914179;FOXP3:1.06384510416;POU2F1..3:0.943285021988;NFE2L1:0.902920835499;XBP1:0.854728244075;FOXO1,3,4:0.84535645322;RXRA_VDR{dimer}:0.829630461141;BREu{core}:0.795206422142;CEBPA,B_DDIT3:0.791637491906;PAX6:0.745258766837;HSF1,2:0.732547416578;MAFB:0.726896074185;PAX8:0.673322778604;SREBF1,2:0.634415558193;NFE2L2:0.623302772104;PDX1:0.554060180149;FOX{F1,F2,J1}:0.528256354908;TBP:0.497270407865;RBPJ:0.47432762822;EGR1..3:0.442574875329;SOX2:0.435303571041;NANOG:0.396740150035;HBP1_HMGB_SSRP1_UBTF:0.302595791788;MEF2{A,B,C,D}:0.299420424042;CRX:0.29258661173;SMAD1..7,9:0.185072468566;ESR1:0.183003526826;RFX1:0.16641628531;EP300:0.143753058202;GLI1..3:0.126441266798;HMGA1,2:0.102142430331;MYOD1:0.0868258567633;CDX1,2,4:0.0105248013416;OCT4_SOX2{dimer}:0.00680064697922;PRRX1,2:-0.0672617407575;AHR_ARNT_ARNT2:-0.149852794751;POU5F1:-0.173545516196;ELK1,4_GABP{A,B1}:-0.181639300743;FOX{I1,J2}:-0.184680356275;HES1:-0.189309971875;E2F1..5:-0.19689142125;CUX2:-0.210361593802;PAX4:-0.21834674568;DBP:-0.234366540763;STAT5{A,B}:-0.261001643105;NHLH1,2:-0.265910149556;ZEB1:-0.289831303523;PBX1:-0.293485016236;MED-1{core}:-0.293543908498;FOXP1:-0.29833478636;NFY{A,B,C}:-0.336276389606;RXR{A,B,G}:-0.341497771736;SRF:-0.357062468886;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.363151603538;MZF1:-0.363693696937;IKZF2:-0.396781787382;TFAP2{A,C}:-0.407412379545;MYFfamily:-0.413448847604;PATZ1:-0.427783009333;LEF1_TCF7_TCF7L1,2:-0.433150381986;TFDP1:-0.435413770534;TFAP2B:-0.462048695273;ZNF148:-0.494399680203;REST:-0.527036584732;SOX17:-0.535280294041;ZFP161:-0.542641428546;ZNF238:-0.546947080808;MTE{core}:-0.571061023604;NR5A1,2:-0.572729626167;ALX1:-0.59643407118;SOX{8,9,10}:-0.605310181938;VSX1,2:-0.651241995776;ZBTB16:-0.654321922465;HOXA9_MEIS1:-0.672905552637;EN1,2:-0.728644633336;HNF1A:-0.728727998639;YY1:-0.743436979902;HNF4A_NR2F1,2:-0.75459561026;MAZ:-0.780681218848;SP1:-0.826078931664;PITX1..3:-0.857371975813;PAX5:-0.869802538696;GCM1,2:-0.891601158341;GZF1:-0.892102420364;TAL1_TCF{3,4,12}:-0.896885071242;HIC1:-0.898661271577;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.899461129746;FOXA2:-0.921707575955;FOXL1:-0.922008037494;SNAI1..3:-0.944907203393;TFCP2:-0.962865201187;T:-0.965743937949;ZNF384:-0.966323803754;bHLH_family:-1.00683632569;NKX6-1,2:-1.0148297261;AR:-1.01903570145;LMO2:-1.0445528443;EBF1:-1.04541785169;TFAP4:-1.04931068497;SOX5:-1.07611251212;RREB1:-1.09412518794;AIRE:-1.11374600644;NRF1:-1.11375154998;NKX2-3_NKX2-5:-1.12268118642;ZBTB6:-1.14003538387;NR6A1:-1.15050216172;MTF1:-1.15539354511;MYBL2:-1.19035013816;ESRRA:-1.20838947721;TLX1..3_NFIC{dimer}:-1.21302961966;ALX4:-1.22480495873;XCPE1{core}:-1.24572360812;GTF2I:-1.25435686519;HOX{A6,A7,B6,B7}:-1.26610069748;ZNF423:-1.27483857303;ADNP_IRX_SIX_ZHX:-1.31807173342;POU3F1..4:-1.32089240184;NKX3-1:-1.32966692266;GFI1:-1.33379345346;FOXQ1:-1.35988452021;GTF2A1,2:-1.4066379937;HOX{A5,B5}:-1.42955265485;ZNF143:-1.43238421041;PRDM1:-1.44643090243;GATA4:-1.47248455439;NR1H4:-1.47594259259;TEAD1:-1.48620246414;NFIX:-1.50159775874;PPARG:-1.53773966936;TP53:-1.55323922612;POU6F1:-1.57692433898;HAND1,2:-1.58007683472;ZIC1..3:-1.58189836732;CDC5L:-1.62445730582;FOXM1:-1.63070153157;EVI1:-1.64545990056;LHX3,4:-1.65033562787;NKX2-2,8:-1.72228347239;HOX{A4,D4}:-1.81094382754;TEF:-1.93092728007;IKZF1:-1.93098612306;GFI1B:-1.96404196734;ARID5B:-2.03811815614;PAX1,9:-2.03843470537;NR3C1:-2.21048510634;UFEwm:-2.40079665738;FOXD3:-2.43349292034;SPZ1:-2.47064153068;KLF4:-2.4948016436;TOPORS:-2.54316794039;POU1F1:-2.57563564231;ONECUT1,2:-2.59755040827;NKX3-2:-2.61779291549 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11625-122B5;search_select_hide=table117:FF:11625-122B5 | |||
}} | }} | ||
Latest revision as of 18:12, 4 June 2020
| Name: | CD34+ Progenitors, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12205 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12205
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12205
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.841 |
| 10 | 10 | 0.127 |
| 100 | 100 | 0.173 |
| 101 | 101 | 0.953 |
| 102 | 102 | 0.951 |
| 103 | 103 | 0.563 |
| 104 | 104 | 0.434 |
| 105 | 105 | 0.0978 |
| 106 | 106 | 0.0123 |
| 107 | 107 | 0.564 |
| 108 | 108 | 0.232 |
| 109 | 109 | 0.698 |
| 11 | 11 | 0.657 |
| 110 | 110 | 0.936 |
| 111 | 111 | 0.759 |
| 112 | 112 | 0.946 |
| 113 | 113 | 0.213 |
| 114 | 114 | 0.908 |
| 115 | 115 | 0.162 |
| 116 | 116 | 0.213 |
| 117 | 117 | 0.0384 |
| 118 | 118 | 0.302 |
| 119 | 119 | 0.434 |
| 12 | 12 | 0.347 |
| 120 | 120 | 0.416 |
| 121 | 121 | 0.4 |
| 122 | 122 | 0.281 |
| 123 | 123 | 0.696 |
| 124 | 124 | 0.589 |
| 125 | 125 | 0.959 |
| 126 | 126 | 0.0668 |
| 127 | 127 | 0.781 |
| 128 | 128 | 0.389 |
| 129 | 129 | 0.556 |
| 13 | 13 | 0.185 |
| 130 | 130 | 0.8 |
| 131 | 131 | 0.442 |
| 132 | 132 | 0.0173 |
| 133 | 133 | 0.34 |
| 134 | 134 | 0.905 |
| 135 | 135 | 0.938 |
| 136 | 136 | 0.845 |
| 137 | 137 | 0.0158 |
| 138 | 138 | 0.73 |
| 139 | 139 | 0.227 |
| 14 | 14 | 0.528 |
| 140 | 140 | 0.589 |
| 141 | 141 | 0.545 |
| 142 | 142 | 0.17 |
| 143 | 143 | 0.0133 |
| 144 | 144 | 0.943 |
| 145 | 145 | 0.713 |
| 146 | 146 | 0.983 |
| 147 | 147 | 0.15 |
| 148 | 148 | 0.348 |
| 149 | 149 | 0.302 |
| 15 | 15 | 0.302 |
| 150 | 150 | 0.531 |
| 151 | 151 | 0.785 |
| 152 | 152 | 0.558 |
| 153 | 153 | 0.895 |
| 154 | 154 | 0.575 |
| 155 | 155 | 0.285 |
| 156 | 156 | 0.653 |
| 157 | 157 | 0.679 |
| 158 | 158 | 0.03 |
| 159 | 159 | 0.0995 |
| 16 | 16 | 0.659 |
| 160 | 160 | 0.337 |
| 161 | 161 | 0.625 |
| 162 | 162 | 0.00826 |
| 163 | 163 | 0.417 |
| 164 | 164 | 0.169 |
| 165 | 165 | 0.42 |
| 166 | 166 | 0.796 |
| 167 | 167 | 0.328 |
| 168 | 168 | 0.138 |
| 169 | 169 | 0.255 |
| 17 | 17 | 0.915 |
| 18 | 18 | 0.558 |
| 19 | 19 | 0.0838 |
| 2 | 2 | 0.209 |
| 20 | 20 | 0.211 |
| 21 | 21 | 0.685 |
| 22 | 22 | 0.785 |
| 23 | 23 | 0.48 |
| 24 | 24 | 0.723 |
| 25 | 25 | 0.267 |
| 26 | 26 | 0.676 |
| 27 | 27 | 0.387 |
| 28 | 28 | 0.261 |
| 29 | 29 | 0.161 |
| 3 | 3 | 0.73 |
| 30 | 30 | 0.263 |
| 31 | 31 | 0.761 |
| 32 | 32 | 4.80792e-4 |
| 33 | 33 | 0.283 |
| 34 | 34 | 0.785 |
| 35 | 35 | 0.169 |
| 36 | 36 | 0.208 |
| 37 | 37 | 0.152 |
| 38 | 38 | 0.91 |
| 39 | 39 | 0.779 |
| 4 | 4 | 0.895 |
| 40 | 40 | 0.65 |
| 41 | 41 | 0.0111 |
| 42 | 42 | 0.519 |
| 43 | 43 | 0.129 |
| 44 | 44 | 0.397 |
| 45 | 45 | 0.879 |
| 46 | 46 | 0.833 |
| 47 | 47 | 0.899 |
| 48 | 48 | 0.805 |
| 49 | 49 | 0.396 |
| 5 | 5 | 0.477 |
| 50 | 50 | 0.687 |
| 51 | 51 | 0.685 |
| 52 | 52 | 0.707 |
| 53 | 53 | 0.591 |
| 54 | 54 | 0.915 |
| 55 | 55 | 0.523 |
| 56 | 56 | 0.776 |
| 57 | 57 | 0.561 |
| 58 | 58 | 0.217 |
| 59 | 59 | 0.751 |
| 6 | 6 | 0.718 |
| 60 | 60 | 0.215 |
| 61 | 61 | 0.369 |
| 62 | 62 | 0.229 |
| 63 | 63 | 0.536 |
| 64 | 64 | 0.983 |
| 65 | 65 | 0.874 |
| 66 | 66 | 0.336 |
| 67 | 67 | 0.89 |
| 68 | 68 | 0.433 |
| 69 | 69 | 0.0946 |
| 7 | 7 | 0.353 |
| 70 | 70 | 0.617 |
| 71 | 71 | 0.26 |
| 72 | 72 | 0.193 |
| 73 | 73 | 0.43 |
| 74 | 74 | 0.0632 |
| 75 | 75 | 0.276 |
| 76 | 76 | 0.178 |
| 77 | 77 | 0.135 |
| 78 | 78 | 0.409 |
| 79 | 79 | 0.128 |
| 8 | 8 | 0.353 |
| 80 | 80 | 0.0132 |
| 81 | 81 | 0.919 |
| 82 | 82 | 0.647 |
| 83 | 83 | 0.00226 |
| 84 | 84 | 0.0657 |
| 85 | 85 | 0.71 |
| 86 | 86 | 0.0511 |
| 87 | 87 | 0.216 |
| 88 | 88 | 0.606 |
| 89 | 89 | 0.306 |
| 9 | 9 | 0.436 |
| 90 | 90 | 0.807 |
| 91 | 91 | 0.998 |
| 92 | 92 | 0.949 |
| 93 | 93 | 0.35 |
| 94 | 94 | 0.208 |
| 95 | 95 | 0.0897 |
| 96 | 96 | 0.886 |
| 97 | 97 | 0.943 |
| 98 | 98 | 0.312 |
| 99 | 99 | 5.93318e-6 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12205
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000026 human CD34-positive hematopoietic stem cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000021 (hematopoietic stem cell sample)
0000026 (human CD34-positive hematopoietic stem cell sample)
0000001 (sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
