FF:11654-122E7: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004675 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008343;DRR009215;DRZ000640;DRZ002025;DRZ011990;DRZ013375 | ||
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0000119,UBERON:0003210 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0002371,CL:0000499,CL:0000327,CL:0000255,CL:0000708 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000091 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Meningeal%2520Cells%252c%2520donor3.CNhs12731.11654-122E7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Meningeal%2520Cells%252c%2520donor3.CNhs12731.11654-122E7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Meningeal%2520Cells%252c%2520donor3.CNhs12731.11654-122E7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Meningeal%2520Cells%252c%2520donor3.CNhs12731.11654-122E7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Meningeal%2520Cells%252c%2520donor3.CNhs12731.11654-122E7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11654-122E7 | |id=FF:11654-122E7 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000091 | ||
|is_obsolete= | |||
|library_id=CNhs12731 | |||
|library_id_phase_based=2:CNhs12731 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11654 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11654 | |||
|name=Meningeal Cells, donor3 | |name=Meningeal Cells, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12731,LSID960,release012,COMPLETED | |profile_hcage=CNhs12731,LSID960,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.129581409228465,0,-0.27483329820609,-0.252683090928258,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.122586389490506,0,0.0153683104289607,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.0863651195885523,0,-0.161847228202635,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.365504672106848,0,0,0.0307366208579214,-0.0969923612426051,0,0,-0.0379026879157279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.168617142851002,0.0153683104289607,0,0,0,0,0,-0.0408310732115202,0.0307366208579214,0,0,-0.0584468268118252,-0.10113752816906,0,0.135670470848458,0,0,-0.0385944119403373,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31009549272546,0.0307366208579214,0,0,-0.180841264025709,-0.384910373348404,0,0,-0.00932649131054008,0,0,0 | |||
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| |||
|rna_box=122 | |rna_box=122 | ||
|rna_catalog_number=SC1405 | |rna_catalog_number=SC1405 | ||
| Line 54: | Line 76: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.22E+09 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.04087269735335e-266!GO:0043226;organelle;6.421833787763e-217!GO:0043229;intracellular organelle;1.42210346519194e-216!GO:0043231;intracellular membrane-bound organelle;9.06129480517997e-213!GO:0043227;membrane-bound organelle;1.21091578364943e-212!GO:0005737;cytoplasm;3.36493332108131e-181!GO:0044422;organelle part;3.04847190520419e-165!GO:0044446;intracellular organelle part;1.23156536787268e-163!GO:0044444;cytoplasmic part;3.64061162554002e-123!GO:0032991;macromolecular complex;4.90754513000961e-115!GO:0005634;nucleus;3.37352125077843e-101!GO:0044238;primary metabolic process;3.82477508096217e-97!GO:0030529;ribonucleoprotein complex;7.00668037706171e-97!GO:0044237;cellular metabolic process;2.34112809918336e-96!GO:0043170;macromolecule metabolic process;3.85851179944225e-91!GO:0044428;nuclear part;3.46471861900105e-90!GO:0043233;organelle lumen;3.1587815414772e-84!GO:0031974;membrane-enclosed lumen;3.1587815414772e-84!GO:0005515;protein binding;2.09089154726694e-81!GO:0003723;RNA binding;6.92476249002005e-80!GO:0005739;mitochondrion;1.4995778401666e-65!GO:0043234;protein complex;2.30595163642991e-58!GO:0006396;RNA processing;5.12887058410232e-58!GO:0016043;cellular component organization and biogenesis;1.7893820775496e-56!GO:0005840;ribosome;8.58007388679069e-56!GO:0043283;biopolymer metabolic process;1.49386060673509e-55!GO:0031981;nuclear lumen;3.10566157383634e-53!GO:0006412;translation;2.29191129752568e-52!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.92554198311944e-51!GO:0003735;structural constituent of ribosome;7.53354910643329e-49!GO:0031090;organelle membrane;1.79813455740494e-48!GO:0010467;gene expression;2.44053132319887e-48!GO:0019538;protein metabolic process;3.76717185353451e-47!GO:0043228;non-membrane-bound organelle;4.01260490653419e-47!GO:0043232;intracellular non-membrane-bound organelle;4.01260490653419e-47!GO:0044429;mitochondrial part;6.14262325206444e-45!GO:0016071;mRNA metabolic process;7.84665735630136e-44!GO:0006996;organelle organization and biogenesis;3.94962164110133e-43!GO:0031967;organelle envelope;4.33496917319417e-43!GO:0031975;envelope;8.8203792588943e-43!GO:0033036;macromolecule localization;1.54276869467374e-42!GO:0015031;protein transport;5.49126001398986e-42!GO:0044260;cellular macromolecule metabolic process;1.04644965908644e-41!GO:0044267;cellular protein metabolic process;1.07328042916979e-41!GO:0009058;biosynthetic process;2.4728303876911e-41!GO:0033279;ribosomal subunit;3.91370999281058e-41!GO:0006259;DNA metabolic process;6.14128766018193e-41!GO:0008380;RNA splicing;1.92880602850207e-40!GO:0009059;macromolecule biosynthetic process;8.66066539242753e-40!GO:0044249;cellular biosynthetic process;2.91808121439129e-39!GO:0008104;protein localization;1.07615001925512e-38!GO:0045184;establishment of protein localization;1.26329558723305e-38!GO:0006397;mRNA processing;1.79768759023424e-38!GO:0005829;cytosol;1.00460519979135e-36!GO:0046907;intracellular transport;1.66253950470389e-36!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.31949604569011e-36!GO:0007049;cell cycle;6.62857758681836e-36!GO:0065003;macromolecular complex assembly;1.24364158931764e-35!GO:0003676;nucleic acid binding;2.60081414319238e-33!GO:0005654;nucleoplasm;2.4456535544118e-32!GO:0022607;cellular component assembly;5.19176772405297e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.97009527490807e-30!GO:0005681;spliceosome;2.0944782429477e-29!GO:0006886;intracellular protein transport;5.96370647992893e-29!GO:0005740;mitochondrial envelope;1.73016643671652e-28!GO:0000278;mitotic cell cycle;4.26286005496308e-28!GO:0022402;cell cycle process;1.42222994368279e-27!GO:0000166;nucleotide binding;1.02585696545608e-26!GO:0031966;mitochondrial membrane;1.03654818605771e-26!GO:0019866;organelle inner membrane;6.72204198337582e-26!GO:0044451;nucleoplasm part;7.48473748259382e-26!GO:0005694;chromosome;7.48473748259382e-26!GO:0006974;response to DNA damage stimulus;1.03314472409276e-24!GO:0016462;pyrophosphatase activity;6.44396021303046e-24!GO:0005743;mitochondrial inner membrane;7.3720611497937e-24!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;9.3845128780214e-24!GO:0051649;establishment of cellular localization;1.44331717578833e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;1.47184631676493e-23!GO:0044445;cytosolic part;1.89387047666245e-23!GO:0051641;cellular localization;2.35113764939956e-23!GO:0044427;chromosomal part;3.52259203085469e-23!GO:0017111;nucleoside-triphosphatase activity;3.9699394307241e-23!GO:0022403;cell cycle phase;9.05978100158362e-23!GO:0000087;M phase of mitotic cell cycle;1.61723032501999e-22!GO:0007067;mitosis;3.98916723216078e-22!GO:0016070;RNA metabolic process;5.83689370203013e-22!GO:0005730;nucleolus;1.10312782105625e-21!GO:0015935;small ribosomal subunit;1.40581489583202e-21!GO:0006457;protein folding;2.3872920898106e-21!GO:0051301;cell division;4.41109019711154e-21!GO:0006281;DNA repair;4.49178274121087e-21!GO:0006119;oxidative phosphorylation;4.52583485907802e-21!GO:0012505;endomembrane system;9.66485464917935e-21!GO:0015934;large ribosomal subunit;1.40072929964986e-20!GO:0031980;mitochondrial lumen;1.43678006788722e-19!GO:0005759;mitochondrial matrix;1.43678006788722e-19!GO:0000279;M phase;2.19852682399797e-19!GO:0022618;protein-RNA complex assembly;2.31440703576235e-19!GO:0006260;DNA replication;4.5456288230625e-19!GO:0032553;ribonucleotide binding;7.32540948963552e-19!GO:0032555;purine ribonucleotide binding;7.32540948963552e-19!GO:0044455;mitochondrial membrane part;1.53412653456819e-18!GO:0051276;chromosome organization and biogenesis;2.8880234336701e-18!GO:0017076;purine nucleotide binding;3.63726426446757e-18!GO:0042254;ribosome biogenesis and assembly;1.2854836230766e-17!GO:0016874;ligase activity;1.70069839005894e-17!GO:0048770;pigment granule;4.2920579885024e-17!GO:0042470;melanosome;4.2920579885024e-17!GO:0009719;response to endogenous stimulus;4.58993930908587e-17!GO:0005783;endoplasmic reticulum;5.80187598245948e-17!GO:0044265;cellular macromolecule catabolic process;2.61757954692839e-16!GO:0006512;ubiquitin cycle;2.67660734887597e-16!GO:0008135;translation factor activity, nucleic acid binding;4.7594892560047e-16!GO:0005524;ATP binding;5.55719509098322e-16!GO:0000502;proteasome complex (sensu Eukaryota);7.91376740961241e-16!GO:0005761;mitochondrial ribosome;1.02495247515548e-15!GO:0000313;organellar ribosome;1.02495247515548e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.05158222733904e-15!GO:0044432;endoplasmic reticulum part;1.06214976504673e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;1.21962276911133e-15!GO:0005635;nuclear envelope;1.55916257034852e-15!GO:0032559;adenyl ribonucleotide binding;1.55916257034852e-15!GO:0006511;ubiquitin-dependent protein catabolic process;1.76258146111542e-15!GO:0019941;modification-dependent protein catabolic process;2.04171850907626e-15!GO:0043632;modification-dependent macromolecule catabolic process;2.04171850907626e-15!GO:0005746;mitochondrial respiratory chain;2.24671250627856e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.24982428729078e-15!GO:0044257;cellular protein catabolic process;3.40219864350553e-15!GO:0043285;biopolymer catabolic process;5.15218546247133e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;5.96018545480278e-15!GO:0000375;RNA splicing, via transesterification reactions;5.96018545480278e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.96018545480278e-15!GO:0008134;transcription factor binding;6.33244982434762e-15!GO:0044453;nuclear membrane part;6.67663515448212e-15!GO:0031965;nuclear membrane;7.82561457304197e-15!GO:0030554;adenyl nucleotide binding;1.0261797696198e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.05790331674688e-14!GO:0006605;protein targeting;2.12552883483451e-14!GO:0051186;cofactor metabolic process;3.00746893725506e-14!GO:0009057;macromolecule catabolic process;5.48959709318407e-14!GO:0050136;NADH dehydrogenase (quinone) activity;6.30096261071261e-14!GO:0003954;NADH dehydrogenase activity;6.30096261071261e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.30096261071261e-14!GO:0051082;unfolded protein binding;1.36267231329718e-13!GO:0016604;nuclear body;1.55916390665669e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;2.37821724427479e-13!GO:0030163;protein catabolic process;4.25775572922782e-13!GO:0048193;Golgi vesicle transport;5.29648962700511e-13!GO:0003743;translation initiation factor activity;7.06173941468771e-13!GO:0006323;DNA packaging;8.89207452764036e-13!GO:0043412;biopolymer modification;1.23981072971424e-12!GO:0051726;regulation of cell cycle;1.30424313388558e-12!GO:0000074;regulation of progression through cell cycle;1.47036237812593e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.49063552906775e-12!GO:0042773;ATP synthesis coupled electron transport;1.49063552906775e-12!GO:0005643;nuclear pore;1.50080302901308e-12!GO:0005794;Golgi apparatus;1.50160461870987e-12!GO:0044248;cellular catabolic process;2.07619530035062e-12!GO:0004386;helicase activity;2.85587960152323e-12!GO:0016887;ATPase activity;3.00230557137171e-12!GO:0042623;ATPase activity, coupled;3.30604555101842e-12!GO:0030964;NADH dehydrogenase complex (quinone);3.40281200975124e-12!GO:0045271;respiratory chain complex I;3.40281200975124e-12!GO:0005747;mitochondrial respiratory chain complex I;3.40281200975124e-12!GO:0006413;translational initiation;4.26937143415e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.96123198720518e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.93622544885441e-12!GO:0006364;rRNA processing;6.93622544885441e-12!GO:0065004;protein-DNA complex assembly;7.66452322415668e-12!GO:0006732;coenzyme metabolic process;1.1492901849705e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.48331246225705e-11!GO:0006399;tRNA metabolic process;1.89873913729445e-11!GO:0016072;rRNA metabolic process;1.98479324507937e-11!GO:0015630;microtubule cytoskeleton;2.13274913642648e-11!GO:0000785;chromatin;2.16677192019741e-11!GO:0065002;intracellular protein transport across a membrane;4.61707125648802e-11!GO:0005789;endoplasmic reticulum membrane;4.64159849077759e-11!GO:0050657;nucleic acid transport;4.64159849077759e-11!GO:0051236;establishment of RNA localization;4.64159849077759e-11!GO:0050658;RNA transport;4.64159849077759e-11!GO:0005793;ER-Golgi intermediate compartment;5.1553571338533e-11!GO:0009259;ribonucleotide metabolic process;5.32067456399661e-11!GO:0006333;chromatin assembly or disassembly;5.40686700690446e-11!GO:0006403;RNA localization;5.52467663130804e-11!GO:0006464;protein modification process;5.71902139400942e-11!GO:0008026;ATP-dependent helicase activity;7.87350434013623e-11!GO:0006913;nucleocytoplasmic transport;8.53563503686654e-11!GO:0016607;nuclear speck;1.37410818408453e-10!GO:0046930;pore complex;1.40964261766684e-10!GO:0000775;chromosome, pericentric region;1.47035819631791e-10!GO:0006446;regulation of translational initiation;2.15492712001101e-10!GO:0006163;purine nucleotide metabolic process;2.15721119279985e-10!GO:0051169;nuclear transport;2.21959972624013e-10!GO:0016192;vesicle-mediated transport;3.60457015938462e-10!GO:0003712;transcription cofactor activity;8.4207637178744e-10!GO:0009150;purine ribonucleotide metabolic process;8.71223732413596e-10!GO:0009260;ribonucleotide biosynthetic process;1.01441934977671e-09!GO:0006334;nucleosome assembly;1.19575967068691e-09!GO:0006164;purine nucleotide biosynthetic process;1.34737494283215e-09!GO:0043687;post-translational protein modification;1.39734795160608e-09!GO:0005819;spindle;1.71615918273824e-09!GO:0009055;electron carrier activity;1.81508852647237e-09!GO:0050794;regulation of cellular process;2.00448826668285e-09!GO:0008565;protein transporter activity;2.14462549691761e-09!GO:0043566;structure-specific DNA binding;2.57229308140058e-09!GO:0006461;protein complex assembly;2.58897682811518e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.02216024804019e-09!GO:0003697;single-stranded DNA binding;3.26845772060917e-09!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.89062387357496e-09!GO:0051028;mRNA transport;3.93974021517102e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.99266353665637e-09!GO:0004812;aminoacyl-tRNA ligase activity;4.99266353665637e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.99266353665637e-09!GO:0009152;purine ribonucleotide biosynthetic process;5.26011738767659e-09!GO:0031497;chromatin assembly;6.39660499627903e-09!GO:0006261;DNA-dependent DNA replication;6.45871557648135e-09!GO:0008639;small protein conjugating enzyme activity;7.63676115420907e-09!GO:0043038;amino acid activation;1.04856539818528e-08!GO:0006418;tRNA aminoacylation for protein translation;1.04856539818528e-08!GO:0043039;tRNA aminoacylation;1.04856539818528e-08!GO:0009060;aerobic respiration;1.05691605969358e-08!GO:0009141;nucleoside triphosphate metabolic process;1.08882772482122e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.34132928501394e-08!GO:0004842;ubiquitin-protein ligase activity;1.43019283000911e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.44560604769394e-08!GO:0030532;small nuclear ribonucleoprotein complex;1.47428415189136e-08!GO:0006366;transcription from RNA polymerase II promoter;1.6886800007949e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.74777493593784e-08!GO:0019787;small conjugating protein ligase activity;1.82948976926414e-08!GO:0016779;nucleotidyltransferase activity;2.27762042443412e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.27762042443412e-08!GO:0045333;cellular respiration;2.7997428837376e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.29600132883004e-08!GO:0009144;purine nucleoside triphosphate metabolic process;3.29600132883004e-08!GO:0017038;protein import;3.50238624007213e-08!GO:0005813;centrosome;3.70558275996248e-08!GO:0003924;GTPase activity;3.80983785965793e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.66766061363364e-08!GO:0051329;interphase of mitotic cell cycle;5.5225383442103e-08!GO:0012501;programmed cell death;5.86674761528533e-08!GO:0048523;negative regulation of cellular process;6.09683038488863e-08!GO:0015986;ATP synthesis coupled proton transport;6.70401935428343e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.70401935428343e-08!GO:0007051;spindle organization and biogenesis;7.96701699000342e-08!GO:0005815;microtubule organizing center;8.34166979004614e-08!GO:0009142;nucleoside triphosphate biosynthetic process;8.34166979004614e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;8.34166979004614e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;8.80162104076402e-08!GO:0051188;cofactor biosynthetic process;9.19206622095988e-08!GO:0006915;apoptosis;9.68223922723439e-08!GO:0051325;interphase;1.07548118055836e-07!GO:0007005;mitochondrion organization and biogenesis;1.20651411767883e-07!GO:0005667;transcription factor complex;1.59545456109928e-07!GO:0006099;tricarboxylic acid cycle;1.85121428304253e-07!GO:0046356;acetyl-CoA catabolic process;1.85121428304253e-07!GO:0016740;transferase activity;1.91459727290898e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.92851976377942e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.92851976377942e-07!GO:0046034;ATP metabolic process;2.05329762047519e-07!GO:0000075;cell cycle checkpoint;2.35401391947936e-07!GO:0051246;regulation of protein metabolic process;2.63719283131601e-07!GO:0030120;vesicle coat;2.6522906238429e-07!GO:0030662;coated vesicle membrane;2.6522906238429e-07!GO:0005657;replication fork;3.35483657359522e-07!GO:0016881;acid-amino acid ligase activity;4.23876674598544e-07!GO:0009056;catabolic process;5.55878196822748e-07!GO:0006084;acetyl-CoA metabolic process;6.02049453783256e-07!GO:0008219;cell death;6.07768682025031e-07!GO:0016265;death;6.07768682025031e-07!GO:0000245;spliceosome assembly;6.54436029641974e-07!GO:0008094;DNA-dependent ATPase activity;6.62008050678487e-07!GO:0048475;coated membrane;7.46046671113379e-07!GO:0030117;membrane coat;7.46046671113379e-07!GO:0005788;endoplasmic reticulum lumen;8.97794441083806e-07!GO:0009117;nucleotide metabolic process;9.79816444125379e-07!GO:0009109;coenzyme catabolic process;9.79816444125379e-07!GO:0016568;chromatin modification;1.05693482540279e-06!GO:0006754;ATP biosynthetic process;1.07062368824799e-06!GO:0006753;nucleoside phosphate metabolic process;1.07062368824799e-06!GO:0019829;cation-transporting ATPase activity;1.0755182121995e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.10592433414776e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.23744353972394e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.48795656544612e-06!GO:0003724;RNA helicase activity;1.68809825071458e-06!GO:0003899;DNA-directed RNA polymerase activity;1.74602871881538e-06!GO:0032446;protein modification by small protein conjugation;1.75547773740175e-06!GO:0048519;negative regulation of biological process;1.78896731668898e-06!GO:0016853;isomerase activity;2.23346572575485e-06!GO:0007010;cytoskeleton organization and biogenesis;2.23564590758333e-06!GO:0000151;ubiquitin ligase complex;2.43282407945975e-06!GO:0009108;coenzyme biosynthetic process;2.45223375270072e-06!GO:0050789;regulation of biological process;2.54097341612656e-06!GO:0051187;cofactor catabolic process;2.73587797848265e-06!GO:0045259;proton-transporting ATP synthase complex;2.79538813242084e-06!GO:0016567;protein ubiquitination;2.81857430174432e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;3.37716857670912e-06!GO:0016563;transcription activator activity;3.7629026783128e-06!GO:0006613;cotranslational protein targeting to membrane;3.91250174290055e-06!GO:0043623;cellular protein complex assembly;4.99798522444902e-06!GO:0016859;cis-trans isomerase activity;5.27277772488714e-06!GO:0005525;GTP binding;5.31856763241553e-06!GO:0005768;endosome;5.31856763241553e-06!GO:0005839;proteasome core complex (sensu Eukaryota);5.56196353867646e-06!GO:0007059;chromosome segregation;5.79345259938185e-06!GO:0031324;negative regulation of cellular metabolic process;6.32062697154291e-06!GO:0003713;transcription coactivator activity;7.00938992775769e-06!GO:0051427;hormone receptor binding;8.99528023421023e-06!GO:0006752;group transfer coenzyme metabolic process;9.09341812505712e-06!GO:0016787;hydrolase activity;9.79610516985141e-06!GO:0031252;leading edge;1.05597684293743e-05!GO:0044431;Golgi apparatus part;1.08674688525706e-05!GO:0016363;nuclear matrix;1.1862970721899e-05!GO:0006793;phosphorus metabolic process;1.20504273581937e-05!GO:0006796;phosphate metabolic process;1.20504273581937e-05!GO:0051170;nuclear import;1.32206841173423e-05!GO:0008654;phospholipid biosynthetic process;1.65301740693995e-05!GO:0019222;regulation of metabolic process;1.68627365164642e-05!GO:0005762;mitochondrial large ribosomal subunit;1.72879529769183e-05!GO:0000315;organellar large ribosomal subunit;1.72879529769183e-05!GO:0000776;kinetochore;1.82916433724926e-05!GO:0035257;nuclear hormone receptor binding;1.9796159361846e-05!GO:0019899;enzyme binding;2.31180629040855e-05!GO:0006606;protein import into nucleus;2.33426827794699e-05!GO:0045786;negative regulation of progression through cell cycle;2.58829031772216e-05!GO:0006302;double-strand break repair;2.75703330231165e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.8175866117056e-05!GO:0043021;ribonucleoprotein binding;2.9550518687243e-05!GO:0031988;membrane-bound vesicle;2.9565364207738e-05!GO:0030867;rough endoplasmic reticulum membrane;3.02112424079709e-05!GO:0005798;Golgi-associated vesicle;3.09822259843287e-05!GO:0004298;threonine endopeptidase activity;3.16582956011571e-05!GO:0009892;negative regulation of metabolic process;3.20470484521351e-05!GO:0008361;regulation of cell size;3.33547822901286e-05!GO:0032561;guanyl ribonucleotide binding;3.48085674164046e-05!GO:0019001;guanyl nucleotide binding;3.48085674164046e-05!GO:0051052;regulation of DNA metabolic process;3.62858965745169e-05!GO:0016023;cytoplasmic membrane-bound vesicle;3.76047567649988e-05!GO:0044440;endosomal part;3.82500138821854e-05!GO:0010008;endosome membrane;3.82500138821854e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.15285239399784e-05!GO:0000314;organellar small ribosomal subunit;4.17732567396882e-05!GO:0005763;mitochondrial small ribosomal subunit;4.17732567396882e-05!GO:0016049;cell growth;4.31432314800432e-05!GO:0016310;phosphorylation;4.38909833027503e-05!GO:0044452;nucleolar part;4.53767671313336e-05!GO:0000786;nucleosome;5.52591485856968e-05!GO:0019843;rRNA binding;5.9543343850984e-05!GO:0045454;cell redox homeostasis;6.07074475094815e-05!GO:0001558;regulation of cell growth;6.18903708867198e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;6.5192522455055e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;7.09652696084541e-05!GO:0051168;nuclear export;7.21833795358583e-05!GO:0006310;DNA recombination;7.35486073403267e-05!GO:0003690;double-stranded DNA binding;8.16177730515651e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;8.35137876247943e-05!GO:0008186;RNA-dependent ATPase activity;8.65775509764097e-05!GO:0030036;actin cytoskeleton organization and biogenesis;9.51397170722882e-05!GO:0015980;energy derivation by oxidation of organic compounds;9.80684117387272e-05!GO:0031982;vesicle;0.000101594118144214!GO:0005769;early endosome;0.000108356075656865!GO:0043069;negative regulation of programmed cell death;0.00011556912520897!GO:0005770;late endosome;0.000119383099277055!GO:0003684;damaged DNA binding;0.000121085116855848!GO:0016564;transcription repressor activity;0.000121628908169553!GO:0031410;cytoplasmic vesicle;0.000146050473097136!GO:0007093;mitotic cell cycle checkpoint;0.000147512674920285!GO:0006916;anti-apoptosis;0.000150367212622589!GO:0016126;sterol biosynthetic process;0.00015264047018653!GO:0019867;outer membrane;0.000160881144708763!GO:0042981;regulation of apoptosis;0.000172693213913961!GO:0043067;regulation of programmed cell death;0.000175177147707905!GO:0007052;mitotic spindle organization and biogenesis;0.000179756206236331!GO:0043066;negative regulation of apoptosis;0.000193662391099333!GO:0006612;protein targeting to membrane;0.000201373333158625!GO:0000059;protein import into nucleus, docking;0.000203055718392474!GO:0003682;chromatin binding;0.000211132037725833!GO:0031968;organelle outer membrane;0.000219554995546819!GO:0004004;ATP-dependent RNA helicase activity;0.000235691772950658!GO:0043681;protein import into mitochondrion;0.000247864853823466!GO:0006383;transcription from RNA polymerase III promoter;0.000269877168333325!GO:0003714;transcription corepressor activity;0.00028166719221062!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000309191968688388!GO:0005874;microtubule;0.000318503023322569!GO:0000139;Golgi membrane;0.000322089549565908!GO:0007088;regulation of mitosis;0.000322089549565908!GO:0003678;DNA helicase activity;0.000342688065436683!GO:0000082;G1/S transition of mitotic cell cycle;0.000346390077269225!GO:0008033;tRNA processing;0.000352951592229067!GO:0005885;Arp2/3 protein complex;0.000357940222784992!GO:0005791;rough endoplasmic reticulum;0.00035855467748124!GO:0005905;coated pit;0.000365251521974065!GO:0046474;glycerophospholipid biosynthetic process;0.000371492454695486!GO:0008250;oligosaccharyl transferase complex;0.000413886108112723!GO:0006626;protein targeting to mitochondrion;0.000418517867706572!GO:0009165;nucleotide biosynthetic process;0.000431408123311213!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000435778175397893!GO:0003729;mRNA binding;0.000436244845769176!GO:0006839;mitochondrial transport;0.000448685469203115!GO:0051252;regulation of RNA metabolic process;0.000449637592161435!GO:0030880;RNA polymerase complex;0.000484617222396206!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00052308654630416!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00052308654630416!GO:0030029;actin filament-based process;0.000530724875534614!GO:0007006;mitochondrial membrane organization and biogenesis;0.000537176994470422!GO:0016481;negative regulation of transcription;0.000549267028422076!GO:0005048;signal sequence binding;0.000551779738680692!GO:0006695;cholesterol biosynthetic process;0.000572894132874056!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000593457820929336!GO:0030133;transport vesicle;0.000604234039525478!GO:0004576;oligosaccharyl transferase activity;0.000610055886474236!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000611510477596083!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000617418055830729!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000629188922882021!GO:0006402;mRNA catabolic process;0.000631283096307894!GO:0033116;ER-Golgi intermediate compartment membrane;0.000634693286699427!GO:0004527;exonuclease activity;0.000653492282378186!GO:0035258;steroid hormone receptor binding;0.000727655318546256!GO:0000228;nuclear chromosome;0.000760506508684993!GO:0031072;heat shock protein binding;0.00079902887616938!GO:0015631;tubulin binding;0.000814105539320444!GO:0008092;cytoskeletal protein binding;0.000844567564797259!GO:0005741;mitochondrial outer membrane;0.000917308112736002!GO:0048471;perinuclear region of cytoplasm;0.000931555532130703!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000984727463455536!GO:0018196;peptidyl-asparagine modification;0.00104302527415859!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00104302527415859!GO:0032508;DNA duplex unwinding;0.00104836435346918!GO:0032392;DNA geometric change;0.00104836435346918!GO:0007017;microtubule-based process;0.00105753780104932!GO:0006275;regulation of DNA replication;0.00108553943234796!GO:0048500;signal recognition particle;0.0011009512225668!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00110598511759924!GO:0000428;DNA-directed RNA polymerase complex;0.00110598511759924!GO:0016491;oxidoreductase activity;0.00116924456314328!GO:0051920;peroxiredoxin activity;0.00122517608335644!GO:0030521;androgen receptor signaling pathway;0.00126076227391067!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00126751643086087!GO:0051789;response to protein stimulus;0.00132229882705981!GO:0006986;response to unfolded protein;0.00132229882705981!GO:0006414;translational elongation;0.00133107782880471!GO:0006401;RNA catabolic process;0.00133116304127832!GO:0008312;7S RNA binding;0.00136217287498215!GO:0046489;phosphoinositide biosynthetic process;0.00141188708281626!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00145036953409255!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00145036953409255!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00145036953409255!GO:0008168;methyltransferase activity;0.00151331669345244!GO:0031323;regulation of cellular metabolic process;0.00152436460867242!GO:0016741;transferase activity, transferring one-carbon groups;0.00153931609863765!GO:0030663;COPI coated vesicle membrane;0.00154083413781873!GO:0030126;COPI vesicle coat;0.00154083413781873!GO:0006268;DNA unwinding during replication;0.00158933665508996!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00164040947292451!GO:0046467;membrane lipid biosynthetic process;0.00178316544496388!GO:0000922;spindle pole;0.00187627727001648!GO:0005684;U2-dependent spliceosome;0.00188214445987018!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0019487443908426!GO:0051087;chaperone binding;0.00195653376339955!GO:0006352;transcription initiation;0.00203858250760152!GO:0048522;positive regulation of cellular process;0.00211799451185444!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00236040016487907!GO:0031124;mRNA 3'-end processing;0.00239219692329617!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00250165229243874!GO:0045047;protein targeting to ER;0.00250165229243874!GO:0043488;regulation of mRNA stability;0.00255908091991298!GO:0043487;regulation of RNA stability;0.00255908091991298!GO:0042802;identical protein binding;0.00256826257980893!GO:0008180;signalosome;0.00265425559658596!GO:0043596;nuclear replication fork;0.00265425559658596!GO:0005876;spindle microtubule;0.00274039084411592!GO:0006289;nucleotide-excision repair;0.00274155144170686!GO:0030027;lamellipodium;0.00288682395385098!GO:0030134;ER to Golgi transport vesicle;0.00303055481016755!GO:0006950;response to stress;0.00315262863653247!GO:0031570;DNA integrity checkpoint;0.00316456034690067!GO:0004518;nuclease activity;0.00320305667549992!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00320705889101961!GO:0016251;general RNA polymerase II transcription factor activity;0.00329848579314489!GO:0040008;regulation of growth;0.00329848579314489!GO:0003711;transcription elongation regulator activity;0.00342401439411031!GO:0016044;membrane organization and biogenesis;0.00342401439411031!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00342401439411031!GO:0030132;clathrin coat of coated pit;0.00342401439411031!GO:0030658;transport vesicle membrane;0.00347158746642745!GO:0042770;DNA damage response, signal transduction;0.00355326204246104!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00358736805468228!GO:0000819;sister chromatid segregation;0.00368860734176946!GO:0065007;biological regulation;0.00386084375596406!GO:0006405;RNA export from nucleus;0.00386310901034866!GO:0030137;COPI-coated vesicle;0.00387856188025438!GO:0005773;vacuole;0.00390549951431561!GO:0030127;COPII vesicle coat;0.00421165314103542!GO:0012507;ER to Golgi transport vesicle membrane;0.00421165314103542!GO:0006091;generation of precursor metabolites and energy;0.00421524975424993!GO:0000070;mitotic sister chromatid segregation;0.00422732063556927!GO:0048487;beta-tubulin binding;0.00436947634937645!GO:0000049;tRNA binding;0.00440521689527698!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00457043809989762!GO:0005637;nuclear inner membrane;0.00480762738841788!GO:0006350;transcription;0.00483283154600323!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00493575507507276!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00493575507507276!GO:0006891;intra-Golgi vesicle-mediated transport;0.00503527094825647!GO:0045941;positive regulation of transcription;0.00511836643264821!GO:0006284;base-excision repair;0.00530902242383066!GO:0008139;nuclear localization sequence binding;0.00539228885173427!GO:0000725;recombinational repair;0.00540119945354005!GO:0000724;double-strand break repair via homologous recombination;0.00540119945354005!GO:0050681;androgen receptor binding;0.00552221711668984!GO:0008610;lipid biosynthetic process;0.00559876468456263!GO:0006270;DNA replication initiation;0.00584269557301515!GO:0007264;small GTPase mediated signal transduction;0.00591658390500827!GO:0051287;NAD binding;0.00593182905561508!GO:0006650;glycerophospholipid metabolic process;0.00608616805913473!GO:0007050;cell cycle arrest;0.00628956998328414!GO:0016408;C-acyltransferase activity;0.00639373844642234!GO:0006595;polyamine metabolic process;0.00645245713879102!GO:0065009;regulation of a molecular function;0.00674320284749795!GO:0006144;purine base metabolic process;0.00691124066417564!GO:0008022;protein C-terminus binding;0.00696165520964443!GO:0045893;positive regulation of transcription, DNA-dependent;0.0071463998920339!GO:0000910;cytokinesis;0.00725928177459603!GO:0006611;protein export from nucleus;0.0074286094935159!GO:0030660;Golgi-associated vesicle membrane;0.00748097286655692!GO:0007021;tubulin folding;0.00749347838482686!GO:0000178;exosome (RNase complex);0.00752689465294122!GO:0015992;proton transport;0.00770673232387629!GO:0030118;clathrin coat;0.00801367189496838!GO:0000339;RNA cap binding;0.00804667020327802!GO:0004003;ATP-dependent DNA helicase activity;0.00819316690563955!GO:0006818;hydrogen transport;0.0083953304869407!GO:0017166;vinculin binding;0.00841954488774751!GO:0031901;early endosome membrane;0.00842993340087022!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00852087568942517!GO:0001726;ruffle;0.00860311331883491!GO:0006497;protein amino acid lipidation;0.00869052569927907!GO:0043022;ribosome binding;0.00874881236675538!GO:0005869;dynactin complex;0.00891278749726831!GO:0005669;transcription factor TFIID complex;0.00891278749726831!GO:0051540;metal cluster binding;0.00891278749726831!GO:0051536;iron-sulfur cluster binding;0.00891278749726831!GO:0032984;macromolecular complex disassembly;0.00894491014774927!GO:0016197;endosome transport;0.00912057774217954!GO:0005862;muscle thin filament tropomyosin;0.00913668735718825!GO:0007346;regulation of progression through mitotic cell cycle;0.00924772779023872!GO:0005832;chaperonin-containing T-complex;0.00944105566088827!GO:0043284;biopolymer biosynthetic process;0.00952304532872187!GO:0031123;RNA 3'-end processing;0.0100237934414077!GO:0051128;regulation of cellular component organization and biogenesis;0.0100540884546422!GO:0008408;3'-5' exonuclease activity;0.0101287285763276!GO:0000792;heterochromatin;0.010242703935547!GO:0030176;integral to endoplasmic reticulum membrane;0.0103881899060205!GO:0043601;nuclear replisome;0.0104170365743358!GO:0030894;replisome;0.0104170365743358!GO:0030384;phosphoinositide metabolic process;0.0110325877370419!GO:0044454;nuclear chromosome part;0.0110325877370419!GO:0030518;steroid hormone receptor signaling pathway;0.0110325877370419!GO:0030041;actin filament polymerization;0.0114887139420048!GO:0000323;lytic vacuole;0.0115005345110451!GO:0005764;lysosome;0.0115005345110451!GO:0042393;histone binding;0.0115979868769164!GO:0032200;telomere organization and biogenesis;0.0118023344579559!GO:0000723;telomere maintenance;0.0118023344579559!GO:0008047;enzyme activator activity;0.0121610089256701!GO:0051098;regulation of binding;0.0121775610394848!GO:0006378;mRNA polyadenylation;0.0126592039637694!GO:0043624;cellular protein complex disassembly;0.0126592039637694!GO:0000077;DNA damage checkpoint;0.0126592039637694!GO:0009116;nucleoside metabolic process;0.0126731676384044!GO:0003746;translation elongation factor activity;0.0127023884596383!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0135102066095964!GO:0004532;exoribonuclease activity;0.0135801222599536!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0135801222599536!GO:0016272;prefoldin complex;0.0136053232826195!GO:0051539;4 iron, 4 sulfur cluster binding;0.0139747259961792!GO:0006376;mRNA splice site selection;0.0140424648094998!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0140424648094998!GO:0051053;negative regulation of DNA metabolic process;0.0142953436452161!GO:0009303;rRNA transcription;0.0143403726096183!GO:0016584;nucleosome positioning;0.0143470514268676!GO:0000152;nuclear ubiquitin ligase complex;0.014521486118616!GO:0006338;chromatin remodeling;0.014779059653209!GO:0031970;organelle envelope lumen;0.0151306622687005!GO:0000096;sulfur amino acid metabolic process;0.0154049236970679!GO:0006506;GPI anchor biosynthetic process;0.0154049236970679!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0154049236970679!GO:0009112;nucleobase metabolic process;0.0154990213832951!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0156246199876616!GO:0006220;pyrimidine nucleotide metabolic process;0.0156796851683621!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0159434563326836!GO:0000793;condensed chromosome;0.0160406167465733!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0161296491299945!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0163069012878786!GO:0042158;lipoprotein biosynthetic process;0.0163372570209555!GO:0043241;protein complex disassembly;0.0163966994149708!GO:0009124;nucleoside monophosphate biosynthetic process;0.0170153769988606!GO:0009123;nucleoside monophosphate metabolic process;0.0170153769988606!GO:0006520;amino acid metabolic process;0.0174080736840554!GO:0005758;mitochondrial intermembrane space;0.0175604979925831!GO:0031625;ubiquitin protein ligase binding;0.0177040701575612!GO:0019206;nucleoside kinase activity;0.0191181704482228!GO:0008652;amino acid biosynthetic process;0.0191351330497653!GO:0004674;protein serine/threonine kinase activity;0.0191368454464887!GO:0010468;regulation of gene expression;0.0191368454464887!GO:0006505;GPI anchor metabolic process;0.0192904705754298!GO:0008154;actin polymerization and/or depolymerization;0.0194840185818423!GO:0030496;midbody;0.0197438809134843!GO:0045892;negative regulation of transcription, DNA-dependent;0.0198246073971733!GO:0005663;DNA replication factor C complex;0.0198596058996134!GO:0005096;GTPase activator activity;0.0200697125356015!GO:0006509;membrane protein ectodomain proteolysis;0.0205134327890406!GO:0033619;membrane protein proteolysis;0.0205134327890406!GO:0000209;protein polyubiquitination;0.0211221689854112!GO:0051101;regulation of DNA binding;0.021345255230522!GO:0006541;glutamine metabolic process;0.0220886359109395!GO:0007569;cell aging;0.0222759071127222!GO:0030659;cytoplasmic vesicle membrane;0.0224464931278001!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0224464931278001!GO:0015002;heme-copper terminal oxidase activity;0.0224464931278001!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0224464931278001!GO:0004129;cytochrome-c oxidase activity;0.0224464931278001!GO:0031529;ruffle organization and biogenesis;0.0225923480660221!GO:0006740;NADPH regeneration;0.023076208163105!GO:0006098;pentose-phosphate shunt;0.023076208163105!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0231372481144389!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0233607557594237!GO:0015399;primary active transmembrane transporter activity;0.0233607557594237!GO:0048146;positive regulation of fibroblast proliferation;0.024377430834714!GO:0033673;negative regulation of kinase activity;0.0244597485034882!GO:0006469;negative regulation of protein kinase activity;0.0244597485034882!GO:0009451;RNA modification;0.0245718215091234!GO:0031902;late endosome membrane;0.0246012869935529!GO:0044262;cellular carbohydrate metabolic process;0.0246211762670797!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0246900158225765!GO:0046483;heterocycle metabolic process;0.0247317292589276!GO:0007243;protein kinase cascade;0.02485825090855!GO:0048144;fibroblast proliferation;0.0255047098407757!GO:0048145;regulation of fibroblast proliferation;0.0255047098407757!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0260032178067584!GO:0000781;chromosome, telomeric region;0.0264832220034785!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0269731157450975!GO:0022890;inorganic cation transmembrane transporter activity;0.0275141133481031!GO:0016407;acetyltransferase activity;0.0279193185622956!GO:0051348;negative regulation of transferase activity;0.0286504694520631!GO:0008629;induction of apoptosis by intracellular signals;0.0287565312232353!GO:0006007;glucose catabolic process;0.0293229217032684!GO:0000726;non-recombinational repair;0.0293229217032684!GO:0006892;post-Golgi vesicle-mediated transport;0.0293591969721257!GO:0008632;apoptotic program;0.0300121498849877!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0302399172568699!GO:0030508;thiol-disulfide exchange intermediate activity;0.030969065531991!GO:0022415;viral reproductive process;0.0314014943156028!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0320525152940655!GO:0050662;coenzyme binding;0.0323431869798793!GO:0045045;secretory pathway;0.0326845957335797!GO:0030833;regulation of actin filament polymerization;0.032720058242664!GO:0022411;cellular component disassembly;0.0328416187292126!GO:0006266;DNA ligation;0.0329231350227518!GO:0006360;transcription from RNA polymerase I promoter;0.0329250832946682!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.033022120548024!GO:0044433;cytoplasmic vesicle part;0.0333177540976616!GO:0030125;clathrin vesicle coat;0.0337578505165184!GO:0030665;clathrin coated vesicle membrane;0.0337578505165184!GO:0006643;membrane lipid metabolic process;0.0339614478192113!GO:0004523;ribonuclease H activity;0.0346189041090959!GO:0031577;spindle checkpoint;0.0346189041090959!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0347259694426394!GO:0045039;protein import into mitochondrial inner membrane;0.0347259694426394!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0347259694426394!GO:0031371;ubiquitin conjugating enzyme complex;0.0347924812847788!GO:0006417;regulation of translation;0.0350453523679377!GO:0005784;translocon complex;0.0353497766386761!GO:0043130;ubiquitin binding;0.0353497766386761!GO:0032182;small conjugating protein binding;0.0353497766386761!GO:0009161;ribonucleoside monophosphate metabolic process;0.0354825589574015!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0354825589574015!GO:0007004;telomere maintenance via telomerase;0.0360487021764977!GO:0008538;proteasome activator activity;0.0363605962062909!GO:0016860;intramolecular oxidoreductase activity;0.0370284881881216!GO:0030119;AP-type membrane coat adaptor complex;0.0371392792798778!GO:0008017;microtubule binding;0.0374937268662996!GO:0008097;5S rRNA binding;0.0377626223327233!GO:0008286;insulin receptor signaling pathway;0.0377626223327233!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0377626223327233!GO:0000086;G2/M transition of mitotic cell cycle;0.0378198010114394!GO:0005680;anaphase-promoting complex;0.0382561107908013!GO:0006607;NLS-bearing substrate import into nucleus;0.0385879004060285!GO:0046519;sphingoid metabolic process;0.0398703829841508!GO:0019752;carboxylic acid metabolic process;0.04032363657718!GO:0008299;isoprenoid biosynthetic process;0.04032363657718!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.04032363657718!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.04032363657718!GO:0003923;GPI-anchor transamidase activity;0.04032363657718!GO:0016255;attachment of GPI anchor to protein;0.04032363657718!GO:0042765;GPI-anchor transamidase complex;0.04032363657718!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0405109176585555!GO:0005732;small nucleolar ribonucleoprotein complex;0.0412744009471993!GO:0031272;regulation of pseudopodium formation;0.0413000165371959!GO:0031269;pseudopodium formation;0.0413000165371959!GO:0031344;regulation of cell projection organization and biogenesis;0.0413000165371959!GO:0031268;pseudopodium organization and biogenesis;0.0413000165371959!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0413000165371959!GO:0031274;positive regulation of pseudopodium formation;0.0413000165371959!GO:0030522;intracellular receptor-mediated signaling pathway;0.0414415654516434!GO:0006400;tRNA modification;0.0415458765376938!GO:0047485;protein N-terminus binding;0.041563500525998!GO:0012506;vesicle membrane;0.041563500525998!GO:0031543;peptidyl-proline dioxygenase activity;0.0421856915132993!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0422307134681283!GO:0007034;vacuolar transport;0.0425235347994817!GO:0008156;negative regulation of DNA replication;0.0425750449304805!GO:0005092;GDP-dissociation inhibitor activity;0.0427255391858583!GO:0006082;organic acid metabolic process;0.0427255391858583!GO:0006984;ER-nuclear signaling pathway;0.0427318872367483!GO:0046128;purine ribonucleoside metabolic process;0.0434490906041158!GO:0042278;purine nucleoside metabolic process;0.0434490906041158!GO:0008234;cysteine-type peptidase activity;0.0437646925234688!GO:0045792;negative regulation of cell size;0.0442775392074248!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0451822124866847!GO:0042026;protein refolding;0.0456552888013949!GO:0006979;response to oxidative stress;0.0456657186463907!GO:0035267;NuA4 histone acetyltransferase complex;0.0461318182672557!GO:0004177;aminopeptidase activity;0.0461933594359723!GO:0008536;Ran GTPase binding;0.0464854602512374!GO:0050790;regulation of catalytic activity;0.0467664067842614!GO:0003756;protein disulfide isomerase activity;0.0472861843499682!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0472861843499682!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0476315069296726!GO:0033043;regulation of organelle organization and biogenesis;0.0476315069296726!GO:0045334;clathrin-coated endocytic vesicle;0.0481566742121705!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0488436324606409!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0488436324606409!GO:0030031;cell projection biogenesis;0.0491395859000013!GO:0015036;disulfide oxidoreductase activity;0.0496978997301851 | |||
|sample_id=11654 | |sample_id=11654 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=meninges | |sample_tissue=meninges | ||
|top_motifs=HSF1,2:1.68033279123;E2F1..5:1.40704291607;HOX{A5,B5}:1.37777632318;PAX8:1.35614239843;TFDP1:1.32605869307;EN1,2:1.30351445043;NR3C1:1.16718959246;T:1.16314137749;GFI1:1.08184081328;ZIC1..3:1.04835971579;NFY{A,B,C}:0.987927918658;TAL1_TCF{3,4,12}:0.977997175215;MYB:0.908818791026;NKX2-2,8:0.838442208006;GZF1:0.787444061413;IKZF1:0.761414666739;ALX4:0.74768488434;MYBL2:0.74367123182;GATA4:0.741573969189;ZNF143:0.729835478711;FOX{I1,J2}:0.701100558108;TEAD1:0.693694212112;SOX17:0.644097183947;HES1:0.637134182981;LEF1_TCF7_TCF7L1,2:0.63323717643;SRF:0.629619979575;TLX1..3_NFIC{dimer}:0.623476513405;ZNF384:0.616948853882;CDC5L:0.608224345817;CRX:0.592396222877;HBP1_HMGB_SSRP1_UBTF:0.558820670815;KLF4:0.518409647585;NFIX:0.514399388866;LHX3,4:0.493348130089;FOXD3:0.478969076088;ZNF238:0.462800153258;XCPE1{core}:0.453942266411;PAX1,9:0.438456694824;NFATC1..3:0.435540376665;PAX3,7:0.434473919743;EBF1:0.429817945516;TEF:0.410889155509;PAX4:0.391772727917;ELF1,2,4:0.390836935097;TFAP4:0.37952528581;NRF1:0.374879489977;STAT5{A,B}:0.373933312041;ZNF423:0.372220037105;NKX3-1:0.368921848976;ONECUT1,2:0.343981160473;UFEwm:0.339535476099;SOX2:0.336409305611;XBP1:0.29980352284;HOX{A4,D4}:0.297934264712;BACH2:0.297827963329;HMGA1,2:0.287992737238;GTF2A1,2:0.255769337518;ALX1:0.253773383471;HAND1,2:0.243489303995;YY1:0.219704753815;HNF4A_NR2F1,2:0.215690078213;FOSL2:0.203559606152;NR1H4:0.195333016747;GFI1B:0.18817726414;RXR{A,B,G}:0.183358778985;PRDM1:0.168965190034;FOS_FOS{B,L1}_JUN{B,D}:0.167400009297;RBPJ:0.150920219856;MZF1:0.140445256272;PAX5:0.131669543;NFE2L2:0.126373706112;SOX{8,9,10}:0.124934770927;GTF2I:0.10947488934;EVI1:0.104048492773;TFCP2:0.0738794222746;HLF:0.0701411354565;ELK1,4_GABP{A,B1}:0.0658355382749;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0642913777468;NR6A1:0.057731005866;POU1F1:0.054615356247;ESRRA:0.0535333117244;ARID5B:0.0462987274374;FOXA2:0.0319696951958;POU3F1..4:0.0298625258494;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0284441845798;MEF2{A,B,C,D}:0.0194089731531;TOPORS:0.00757100993189;SPZ1:0.0064051563396;ZFP161:0.00496735312365;NHLH1,2:-0.00617181575821;MAZ:-0.0111693445672;POU2F1..3:-0.0113364115009;TBX4,5:-0.0197898814869;PPARG:-0.0200858719204;FOXQ1:-0.0200971970198;TP53:-0.0283012810148;SOX5:-0.0308174660952;PDX1:-0.0355240781012;FOXO1,3,4:-0.0438992598524;NANOG{mouse}:-0.0593982091803;MYFfamily:-0.0612735977175;AHR_ARNT_ARNT2:-0.0626452703071;HOXA9_MEIS1:-0.0971191172582;AR:-0.104298498468;ADNP_IRX_SIX_ZHX:-0.104413306238;AIRE:-0.109256934575;STAT1,3:-0.110543198541;HNF1A:-0.114891653186;NFE2:-0.117637300407;POU5F1:-0.121364164802;CUX2:-0.12879597907;ETS1,2:-0.130448455633;OCT4_SOX2{dimer}:-0.143222341094;RUNX1..3:-0.152390403573;JUN:-0.154888900889;PBX1:-0.159327722509;NANOG:-0.159670854595;NKX6-1,2:-0.164709092452;bHLH_family:-0.170948873182;BPTF:-0.178471170435;TGIF1:-0.180935617095;RFX1:-0.181340156061;NR5A1,2:-0.182390779271;MAFB:-0.187640257458;ZBTB6:-0.191873982736;DMAP1_NCOR{1,2}_SMARC:-0.197419184729;GCM1,2:-0.201455376212;PATZ1:-0.215343024092;NFE2L1:-0.216734036792;TBP:-0.218681716465;PRRX1,2:-0.230015718051;NFIL3:-0.231957665554;FOXP3:-0.243261595219;SPI1:-0.243669785222;SPIB:-0.254968620667;HIC1:-0.257541275876;HOX{A6,A7,B6,B7}:-0.269637634111;IKZF2:-0.274229559166;BREu{core}:-0.276606554767;CEBPA,B_DDIT3:-0.281060950258;ZNF148:-0.282490952547;PAX2:-0.294446129965;NKX3-2:-0.309757579651;ATF6:-0.314332047808;HIF1A:-0.323370346246;MTF1:-0.327100440514;MED-1{core}:-0.328079738189;GLI1..3:-0.333175600328;GATA6:-0.340718506211;SP1:-0.346601396615;CDX1,2,4:-0.358329979725;CREB1:-0.359074136477;NFKB1_REL_RELA:-0.373852494265;RXRA_VDR{dimer}:-0.377217104084;NKX2-3_NKX2-5:-0.384223582798;MTE{core}:-0.388443143243;FOXM1:-0.396426730115;ZBTB16:-0.410957150294;ESR1:-0.430944837739;FOXL1:-0.434103957021;REST:-0.449489397861;TFAP2B:-0.45049649468;NKX2-1,4:-0.489687364435;TFAP2{A,C}:-0.519532930359;HMX1:-0.52845353009;EGR1..3:-0.542125339891;STAT2,4,6:-0.555405701724;PAX6:-0.556424966064;ATF2:-0.581713376703;RREB1:-0.588059054221;EP300:-0.589477913348;ATF5_CREB3:-0.605579238522;IRF1,2:-0.610672297625;SNAI1..3:-0.61637323433;FOXP1:-0.620219831658;IRF7:-0.625991130187;VSX1,2:-0.646067205378;RFX2..5_RFXANK_RFXAP:-0.713130213182;ATF4:-0.743557615257;RORA:-0.750225673479;SMAD1..7,9:-0.775184957543;SREBF1,2:-0.850304967536;PITX1..3:-0.864222713037;POU6F1:-0.867910053389;FOX{F1,F2,J1}:-0.889682355203;ZEB1:-0.91409014651;LMO2:-0.917776469969;MYOD1:-0.939196720698;FOX{D1,D2}:-0.942014609489;FOXN1:-0.962675094651;DBP:-0.986245995258;TLX2:-1.0400915677 | |top_motifs=HSF1,2:1.68033279123;E2F1..5:1.40704291607;HOX{A5,B5}:1.37777632318;PAX8:1.35614239843;TFDP1:1.32605869307;EN1,2:1.30351445043;NR3C1:1.16718959246;T:1.16314137749;GFI1:1.08184081328;ZIC1..3:1.04835971579;NFY{A,B,C}:0.987927918658;TAL1_TCF{3,4,12}:0.977997175215;MYB:0.908818791026;NKX2-2,8:0.838442208006;GZF1:0.787444061413;IKZF1:0.761414666739;ALX4:0.74768488434;MYBL2:0.74367123182;GATA4:0.741573969189;ZNF143:0.729835478711;FOX{I1,J2}:0.701100558108;TEAD1:0.693694212112;SOX17:0.644097183947;HES1:0.637134182981;LEF1_TCF7_TCF7L1,2:0.63323717643;SRF:0.629619979575;TLX1..3_NFIC{dimer}:0.623476513405;ZNF384:0.616948853882;CDC5L:0.608224345817;CRX:0.592396222877;HBP1_HMGB_SSRP1_UBTF:0.558820670815;KLF4:0.518409647585;NFIX:0.514399388866;LHX3,4:0.493348130089;FOXD3:0.478969076088;ZNF238:0.462800153258;XCPE1{core}:0.453942266411;PAX1,9:0.438456694824;NFATC1..3:0.435540376665;PAX3,7:0.434473919743;EBF1:0.429817945516;TEF:0.410889155509;PAX4:0.391772727917;ELF1,2,4:0.390836935097;TFAP4:0.37952528581;NRF1:0.374879489977;STAT5{A,B}:0.373933312041;ZNF423:0.372220037105;NKX3-1:0.368921848976;ONECUT1,2:0.343981160473;UFEwm:0.339535476099;SOX2:0.336409305611;XBP1:0.29980352284;HOX{A4,D4}:0.297934264712;BACH2:0.297827963329;HMGA1,2:0.287992737238;GTF2A1,2:0.255769337518;ALX1:0.253773383471;HAND1,2:0.243489303995;YY1:0.219704753815;HNF4A_NR2F1,2:0.215690078213;FOSL2:0.203559606152;NR1H4:0.195333016747;GFI1B:0.18817726414;RXR{A,B,G}:0.183358778985;PRDM1:0.168965190034;FOS_FOS{B,L1}_JUN{B,D}:0.167400009297;RBPJ:0.150920219856;MZF1:0.140445256272;PAX5:0.131669543;NFE2L2:0.126373706112;SOX{8,9,10}:0.124934770927;GTF2I:0.10947488934;EVI1:0.104048492773;TFCP2:0.0738794222746;HLF:0.0701411354565;ELK1,4_GABP{A,B1}:0.0658355382749;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0642913777468;NR6A1:0.057731005866;POU1F1:0.054615356247;ESRRA:0.0535333117244;ARID5B:0.0462987274374;FOXA2:0.0319696951958;POU3F1..4:0.0298625258494;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0284441845798;MEF2{A,B,C,D}:0.0194089731531;TOPORS:0.00757100993189;SPZ1:0.0064051563396;ZFP161:0.00496735312365;NHLH1,2:-0.00617181575821;MAZ:-0.0111693445672;POU2F1..3:-0.0113364115009;TBX4,5:-0.0197898814869;PPARG:-0.0200858719204;FOXQ1:-0.0200971970198;TP53:-0.0283012810148;SOX5:-0.0308174660952;PDX1:-0.0355240781012;FOXO1,3,4:-0.0438992598524;NANOG{mouse}:-0.0593982091803;MYFfamily:-0.0612735977175;AHR_ARNT_ARNT2:-0.0626452703071;HOXA9_MEIS1:-0.0971191172582;AR:-0.104298498468;ADNP_IRX_SIX_ZHX:-0.104413306238;AIRE:-0.109256934575;STAT1,3:-0.110543198541;HNF1A:-0.114891653186;NFE2:-0.117637300407;POU5F1:-0.121364164802;CUX2:-0.12879597907;ETS1,2:-0.130448455633;OCT4_SOX2{dimer}:-0.143222341094;RUNX1..3:-0.152390403573;JUN:-0.154888900889;PBX1:-0.159327722509;NANOG:-0.159670854595;NKX6-1,2:-0.164709092452;bHLH_family:-0.170948873182;BPTF:-0.178471170435;TGIF1:-0.180935617095;RFX1:-0.181340156061;NR5A1,2:-0.182390779271;MAFB:-0.187640257458;ZBTB6:-0.191873982736;DMAP1_NCOR{1,2}_SMARC:-0.197419184729;GCM1,2:-0.201455376212;PATZ1:-0.215343024092;NFE2L1:-0.216734036792;TBP:-0.218681716465;PRRX1,2:-0.230015718051;NFIL3:-0.231957665554;FOXP3:-0.243261595219;SPI1:-0.243669785222;SPIB:-0.254968620667;HIC1:-0.257541275876;HOX{A6,A7,B6,B7}:-0.269637634111;IKZF2:-0.274229559166;BREu{core}:-0.276606554767;CEBPA,B_DDIT3:-0.281060950258;ZNF148:-0.282490952547;PAX2:-0.294446129965;NKX3-2:-0.309757579651;ATF6:-0.314332047808;HIF1A:-0.323370346246;MTF1:-0.327100440514;MED-1{core}:-0.328079738189;GLI1..3:-0.333175600328;GATA6:-0.340718506211;SP1:-0.346601396615;CDX1,2,4:-0.358329979725;CREB1:-0.359074136477;NFKB1_REL_RELA:-0.373852494265;RXRA_VDR{dimer}:-0.377217104084;NKX2-3_NKX2-5:-0.384223582798;MTE{core}:-0.388443143243;FOXM1:-0.396426730115;ZBTB16:-0.410957150294;ESR1:-0.430944837739;FOXL1:-0.434103957021;REST:-0.449489397861;TFAP2B:-0.45049649468;NKX2-1,4:-0.489687364435;TFAP2{A,C}:-0.519532930359;HMX1:-0.52845353009;EGR1..3:-0.542125339891;STAT2,4,6:-0.555405701724;PAX6:-0.556424966064;ATF2:-0.581713376703;RREB1:-0.588059054221;EP300:-0.589477913348;ATF5_CREB3:-0.605579238522;IRF1,2:-0.610672297625;SNAI1..3:-0.61637323433;FOXP1:-0.620219831658;IRF7:-0.625991130187;VSX1,2:-0.646067205378;RFX2..5_RFXANK_RFXAP:-0.713130213182;ATF4:-0.743557615257;RORA:-0.750225673479;SMAD1..7,9:-0.775184957543;SREBF1,2:-0.850304967536;PITX1..3:-0.864222713037;POU6F1:-0.867910053389;FOX{F1,F2,J1}:-0.889682355203;ZEB1:-0.91409014651;LMO2:-0.917776469969;MYOD1:-0.939196720698;FOX{D1,D2}:-0.942014609489;FOXN1:-0.962675094651;DBP:-0.986245995258;TLX2:-1.0400915677 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11654-122E7;search_select_hide=table117:FF:11654-122E7 | |||
}} | }} | ||
Latest revision as of 18:13, 4 June 2020
| Name: | Meningeal Cells, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12731 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12731
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12731
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.996 |
| 10 | 10 | 0.565 |
| 100 | 100 | 0.938 |
| 101 | 101 | 0.757 |
| 102 | 102 | 0.206 |
| 103 | 103 | 0.885 |
| 104 | 104 | 0.669 |
| 105 | 105 | 0.681 |
| 106 | 106 | 0.169 |
| 107 | 107 | 0.302 |
| 108 | 108 | 0.348 |
| 109 | 109 | 0.151 |
| 11 | 11 | 0.868 |
| 110 | 110 | 0.202 |
| 111 | 111 | 0.682 |
| 112 | 112 | 0.205 |
| 113 | 113 | 0.0348 |
| 114 | 114 | 0.993 |
| 115 | 115 | 0.663 |
| 116 | 116 | 0.487 |
| 117 | 117 | 0.575 |
| 118 | 118 | 0.219 |
| 119 | 119 | 0.535 |
| 12 | 12 | 0.354 |
| 120 | 120 | 0.147 |
| 121 | 121 | 0.53 |
| 122 | 122 | 0.498 |
| 123 | 123 | 7.60717e-4 |
| 124 | 124 | 0.949 |
| 125 | 125 | 0.323 |
| 126 | 126 | 0.391 |
| 127 | 127 | 0.329 |
| 128 | 128 | 0.254 |
| 129 | 129 | 0.824 |
| 13 | 13 | 0.241 |
| 130 | 130 | 0.00788 |
| 131 | 131 | 0.818 |
| 132 | 132 | 0.641 |
| 133 | 133 | 0.99 |
| 134 | 134 | 0.277 |
| 135 | 135 | 0.326 |
| 136 | 136 | 0.158 |
| 137 | 137 | 0.207 |
| 138 | 138 | 0.452 |
| 139 | 139 | 4.93403e-4 |
| 14 | 14 | 0.0515 |
| 140 | 140 | 0.361 |
| 141 | 141 | 0.831 |
| 142 | 142 | 0.476 |
| 143 | 143 | 0.257 |
| 144 | 144 | 0.497 |
| 145 | 145 | 0.871 |
| 146 | 146 | 0.147 |
| 147 | 147 | 0.275 |
| 148 | 148 | 0.806 |
| 149 | 149 | 0.954 |
| 15 | 15 | 0.886 |
| 150 | 150 | 0.284 |
| 151 | 151 | 0.134 |
| 152 | 152 | 0.25 |
| 153 | 153 | 0.814 |
| 154 | 154 | 0.253 |
| 155 | 155 | 0.0754 |
| 156 | 156 | 0.62 |
| 157 | 157 | 0.0716 |
| 158 | 158 | 0.0107 |
| 159 | 159 | 0.251 |
| 16 | 16 | 0.436 |
| 160 | 160 | 0.0842 |
| 161 | 161 | 0.55 |
| 162 | 162 | 0.424 |
| 163 | 163 | 0.97 |
| 164 | 164 | 0.158 |
| 165 | 165 | 0.46 |
| 166 | 166 | 0.937 |
| 167 | 167 | 0.289 |
| 168 | 168 | 0.443 |
| 169 | 169 | 0.148 |
| 17 | 17 | 0.845 |
| 18 | 18 | 0.493 |
| 19 | 19 | 0.236 |
| 2 | 2 | 0.981 |
| 20 | 20 | 0.39 |
| 21 | 21 | 0.0766 |
| 22 | 22 | 0.411 |
| 23 | 23 | 0.191 |
| 24 | 24 | 0.0315 |
| 25 | 25 | 0.862 |
| 26 | 26 | 0.643 |
| 27 | 27 | 0.451 |
| 28 | 28 | 0.323 |
| 29 | 29 | 0.757 |
| 3 | 3 | 0.764 |
| 30 | 30 | 0.496 |
| 31 | 31 | 0.37 |
| 32 | 32 | 0.351 |
| 33 | 33 | 0.155 |
| 34 | 34 | 0.893 |
| 35 | 35 | 0.164 |
| 36 | 36 | 0.156 |
| 37 | 37 | 0.966 |
| 38 | 38 | 0.735 |
| 39 | 39 | 0.491 |
| 4 | 4 | 0.466 |
| 40 | 40 | 0.644 |
| 41 | 41 | 0.462 |
| 42 | 42 | 0.405 |
| 43 | 43 | 0.42 |
| 44 | 44 | 0.831 |
| 45 | 45 | 0.346 |
| 46 | 46 | 0.915 |
| 47 | 47 | 0.319 |
| 48 | 48 | 0.61 |
| 49 | 49 | 0.181 |
| 5 | 5 | 0.63 |
| 50 | 50 | 0.616 |
| 51 | 51 | 0.912 |
| 52 | 52 | 0.112 |
| 53 | 53 | 0.119 |
| 54 | 54 | 0.766 |
| 55 | 55 | 0.589 |
| 56 | 56 | 0.939 |
| 57 | 57 | 0.739 |
| 58 | 58 | 0.127 |
| 59 | 59 | 0.286 |
| 6 | 6 | 0.948 |
| 60 | 60 | 0.0554 |
| 61 | 61 | 0.83 |
| 62 | 62 | 0.426 |
| 63 | 63 | 0.499 |
| 64 | 64 | 0.743 |
| 65 | 65 | 0.365 |
| 66 | 66 | 0.011 |
| 67 | 67 | 0.759 |
| 68 | 68 | 0.528 |
| 69 | 69 | 0.607 |
| 7 | 7 | 0.942 |
| 70 | 70 | 0.00891 |
| 71 | 71 | 0.72 |
| 72 | 72 | 0.55 |
| 73 | 73 | 0.908 |
| 74 | 74 | 0.638 |
| 75 | 75 | 0.93 |
| 76 | 76 | 0.481 |
| 77 | 77 | 0.952 |
| 78 | 78 | 0.754 |
| 79 | 79 | 0.84 |
| 8 | 8 | 0.359 |
| 80 | 80 | 0.798 |
| 81 | 81 | 0.321 |
| 82 | 82 | 0.017 |
| 83 | 83 | 0.21 |
| 84 | 84 | 0.208 |
| 85 | 85 | 0.0551 |
| 86 | 86 | 0.161 |
| 87 | 87 | 0.0521 |
| 88 | 88 | 0.64 |
| 89 | 89 | 0.905 |
| 9 | 9 | 0.368 |
| 90 | 90 | 0.748 |
| 91 | 91 | 0.761 |
| 92 | 92 | 0.0565 |
| 93 | 93 | 0.554 |
| 94 | 94 | 0.745 |
| 95 | 95 | 0.0954 |
| 96 | 96 | 0.606 |
| 97 | 97 | 0.289 |
| 98 | 98 | 0.778 |
| 99 | 99 | 0.00106 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12731
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000327 (extracellular matrix secreting cell)
0000255 (eukaryotic cell)
0000708 (leptomeningeal cell)
UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
0000119 (cell layer)
0003210 (blood-cerebrospinal fluid barrier)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000091 (human leptomeningeal cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
