FF:11689-122I6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00004906 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX008443;DRR009315;DRZ000740;DRZ002125;DRZ012090;DRZ013475 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000966,UBERON:0000970,UBERON:0000019,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004923,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0005388,UBERON:0000020,UBERON:0010371,UBERON:0007625,UBERON:0001781,UBERON:0001032,UBERON:0010317,UBERON:0001782,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0002104,UBERON:0001802,UBERON:0004456,UBERON:0001456,UBERON:0010230 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000325,CL:0000147,CL:0000255,CL:0000149,CL:0002586 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000158 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr14:57277178..57277203,-!p1@OTX2!2.11!127.22!OTX2;;chr11:61520075..61520136,+!p1@C11orf9!1.91!163.01!C11orf9;;chr9:126774018..126774055,+!p1@LHX2!1.78!58.57!LHX2;;chr11:61522844..61522875,+!p2@C11orf9!1.61!40.02!C11orf9;;chr15:42749722..42749739,-!p2@ZFP106!1.58!65.40!ZFP106;;chr11:31832658..31832681,-!p1@PAX6!1.48!29.28!PAX6;;chr14:57272369..57272391,-!p2@OTX2!1.47!28.63!OTX2;;chr14:57277098..57277116,-!p3@OTX2!1.30!18.87!OTX2;;chr19:48325184..48325211,+!p1@CRX!1.30!18.87!CRX;;chr3:25469724..25469773,+!p1@RARB!1.28!25.70!RARB;;chr2:45169193..45169219,+!p3@SIX3!1.28!17.90!SIX3;;chr9:126773880..126773895,+!p2@LHX2!1.28!17.90!LHX2;;chr7:100065686..100065701,-!p2@TSC22D4!1.24!16.27!TSC22D4;;chr2:45168875..45168916,+!p1@SIX3!1.22!15.62!SIX3;;chr2:5832508..5832524,+!p1@SOX11!1.19!14.32!SOX11;;chr9:126774058..126774081,+!p3@LHX2!1.18!13.99!LHX2;;chr2:45169143..45169167,+!p5@SIX3!1.14!12.69!SIX3;;chr17:46132044..46132080,+!p4@NFE2L1!1.14!12.69!NFE2L1;;chr6:34204921..34204939,+!p3@HMGA1!1.13!376.79!HMGA1;;chr6:1312325..1312340,+!p1@FOXQ1!1.12!19.85!FOXQ1;;chr15:83953397..83953425,-!p1@BNC1!1.12!13.99!BNC1;;chr3:52001448..52001478,-!p2@PCBP4!1.07!151.30!PCBP4;;chr3:141121847..141121868,+!p5@ZBTB38!1.06!15.94!ZBTB38;;chr1:41827095..41827155,+!p1@FOXO6!1.03!13.34!FOXO6;;chr18:56940611..56940660,-!p1@RAX!1.03!9.76!RAX;;chr9:86594363..86594374,-!p@chr9:86594363..86594374,-!0.99!8.79!HNRPK;;chr2:45168834..45168847,+!p2@SIX3!0.99!8.79!SIX3;;chr12:66218255..66218304,+!p3@HMGA2!0.98!23.75!HMGA2;;chr12:66218598..66218645,+!p2@HMGA2!0.97!39.37!HMGA2;;chr2:46524897..46524911,+!p2@EPAS1!0.93!21.80!EPAS1;;chr6:21593973..21593988,+!p1@SOX4!0.92!274.29!SOX4;;chr17:38498402..38498445,+!p3@RARA!0.92!27.33!RARA;;chr6:21597765..21597779,+!p2@SOX4!0.91!60.52!SOX4;;chr7:64838786..64838809,+!p2@ZNF92!0.91!42.62!ZNF92;;chr2:63277948..63277974,+!p1@OTX1!0.91!7.16!OTX1;;chr3:141150883..141150961,+!p6@ZBTB38!0.91!7.16!ZBTB38;;chr19:50432453..50432468,+!p1@ATF5!0.89!394.68!ATF5;;chr12:66218836..66218888,+!p1@HMGA2!0.89!66.05!HMGA2;;chr12:66218183..66218209,+!p4@HMGA2!0.89!13.34!HMGA2;;chr12:66218378..66218401,+!p6@HMGA2!0.89!10.74!HMGA2;;chr14:57277163..57277168,-!p4@OTX2!0.88!6.51!OTX2;;chr1:2985760..2985774,+!p1@PRDM16!0.88!6.51!PRDM16;;chr11:31832610..31832639,-!p5@PAX6!0.86!6.18!PAX6;;chr5:92918919..92918942,+!p1@NR2F1!0.85!28.63!NR2F1;;chr13:72441315..72441454,-!p1@DACH1!0.84!12.36!DACH1;;chr16:1031762..1031781,+!p1@SOX8!0.84!5.86!SOX8;;chr18:19749541..19749557,+!p1@GATA6!0.83!19.20!GATA6;;chr2:5832493..5832507,+!p2@SOX11!0.82!5.53!SOX11;;chr8:72756063..72756125,-!p1@MSC!0.81!11.71!MSC;;chr15:66994663..66994680,+!p1@SMAD6!0.79!13.02!SMAD6;;chr2:46524537..46524553,+!p1@EPAS1!0.78!539.48!EPAS1;;chr5:178368186..178368238,+!p1@ZNF454!0.78!9.44!ZNF454;;chr8:72756667..72756736,-!p2@MSC!0.78!8.13!MSC;;chr3:170076314..170076334,+!p2@SKIL!0.78!6.83!SKIL;;chr18:56940663..56940691,-!p2@RAX!0.77!4.88!RAX;;chr13:73633131..73633149,+!p1@KLF5!0.76!55.64!KLF5;;chr1:170633348..170633399,+!p2@PRRX1!0.75!6.51!PRRX1;;chr17:38498594..38498661,+!p2@RARA!0.74!16.59!RARA;;chr8:72756637..72756664,-!p3@MSC!0.74!5.21!MSC;;chr8:72755987..72756002,-!p7@MSC!0.74!4.56!MSC;;chr2:45168856..45168867,+!p7@SIX3!0.74!4.56!SIX3;;chr2:45168959..45168990,+!p6@SIX3!0.74!4.56!SIX3;;chr3:141121820..141121838,+!p9@ZBTB38!0.74!4.56!ZBTB38;;chr5:72744594..72744609,-!p1@FOXD1!0.72!21.80!FOXD1;;chr2:45168997..45169020,+!p4@SIX3!0.72!4.23!SIX3;;chr6:19837592..19837621,+!p1@ID4!0.70!27.98!ID4;;chr5:124082322..124082364,-!p1@ZNF608!0.70!11.39!ZNF608;;chr1:209979467..209979494,-!p1@IRF6!0.70!4.56!IRF6;;chr12:80084737..80084763,-!p3@PAWR!0.69!16.27!PAWR;;chr6:126102292..126102329,+!p3@NCOA7!0.69!14.32!NCOA7;;chr7:101917407..101917443,+!p3@CUX1!0.69!3.90!CUX1;;chr11:61522820..61522823,+!p9@C11orf9!0.69!3.90!C11orf9;;chr22:38380543..38380569,-!p1@SOX10!0.69!3.90!SOX10;;chr7:28448995..28449011,+!p4@CREB5!0.68!5.53!CREB5;;chr8:72756023..72756055,-!p6@MSC!0.68!4.88!MSC;;chr12:26277956..26277980,-!p1@BHLHE41!0.67!14.97!BHLHE41;;chr12:125003087..125003141,-!p4@NCOR2!0.67!4.88!NCOR2;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.66!41.00!GLIS2;;chr2:46524878..46524891,+!p3@EPAS1!0.66!6.83!EPAS1;;chr12:66218152..66218174,+!p10@HMGA2!0.66!3.90!HMGA2;;chr11:125034640..125034655,+!p1@PKNOX2!0.66!3.58!PKNOX2;;chr19:47523058..47523114,+!p1@NPAS1!0.66!3.58!NPAS1;;chr8:128748308..128748324,+!p2@MYC!0.65!113.23!MYC;;chr15:37390482..37390572,-!p7@MEIS2!0.64!4.88!MEIS2;;chr3:128206762..128206781,-!p2@GATA2!0.63!23.75!GATA2;;chr12:124873852..124873881,-!p3@NCOR2!0.63!23.10!NCOR2;;chr11:12696071..12696086,+!p3@TEAD1!0.63!4.56!TEAD1;;chr11:31832687..31832704,-!p6@PAX6!0.63!3.25!PAX6;;chr11:31832862..31832884,-!p2@PAX6!0.63!3.25!PAX6;;chr11:31839488..31839515,-!p3@PAX6!0.63!3.25!PAX6;;chr12:66218420..66218439,+!p12@HMGA2!0.63!3.25!HMGA2;;chr19:46800289..46800327,+!p2@HIF3A!0.63!3.25!HIF3A;;chr1:2985726..2985752,+!p2@PRDM16!0.63!3.25!PRDM16;;chr12:124873357..124873401,-!p1@NCOR2!0.62!44.25!NCOR2;;chr16:88519669..88519726,+!p1@ZFPM1!0.62!34.16!ZFPM1;;chr9:73029219..73029289,-!p2@KLF9!0.62!11.06!KLF9;;chr12:66218212..66218244,+!p5@HMGA2!0.62!4.88!HMGA2;;chr20:6748325..6748352,+!p1@BMP2!0.62!4.88!BMP2;;chr12:26277817..26277863,-!p2@BHLHE41!0.62!4.56!BHLHE41;;chr2:46602901..46602926,+!p7@EPAS1!0.62!4.56!EPAS1;;chr1:212782094..212782109,+!p1@ATF3!0.61!101.84!ATF3;;chr13:45151259..45151326,-!p2@TSC22D1!0.61!21.80!TSC22D1;;chr5:92919100..92919135,+!p3@NR2F1!0.61!3.90!NR2F1;;chr17:38465441..38465481,+!p6@RARA!0.61!3.90!RARA;;chr1:170632285..170632309,+!p1@PRRX1!0.61!3.58!PRRX1;;chr3:193853927..193853944,+!p1@HES1!0.60!119.09!HES1;;chr7:6655225..6655279,+!p1@ENST00000457543!0.60!4.88!ZNF853;;chr18:19749386..19749404,+!p2@GATA6!0.60!4.56!GATA6;;chr8:86089369..86089408,+!p1@E2F5!0.59!9.11!E2F5;;chr7:113726357..113726443,+!p1@FOXP2!0.59!5.53!FOXP2;;chrX:84498989..84499003,+!p1@ZNF711!0.59!4.23!ZNF711;;chr12:66218443..66218461,+!p8@HMGA2!0.59!3.90!HMGA2;;chr15:37391588..37391604,-!p11@MEIS2!0.59!3.90!MEIS2;;chr17:38498510..38498540,+!p7@RARA!0.59!3.58!RARA;;chr3:25469815..25469866,+!p3@RARB!0.59!2.93!RARB;;chr3:25470156..25470227,+!p2@RARB!0.59!2.93!RARB;;chr11:46299443..46299459,+!p4@CREB3L1!0.59!2.93!CREB3L1;;chr12:66218904..66218913,+!p11@HMGA2!0.59!2.93!HMGA2;;chr19:9473676..9473712,+!p2@ZNF177,p2@ZNF559-ZNF177!0.59!2.93!ZNF177;;chr20:42574529..42574563,+!p3@TOX2!0.59!2.93!TOX2;;chr18:3450161..3450183,+!p1@TGIF1!0.58!118.76!TGIF1;;chr19:45971246..45971265,+!p1@FOSB!0.58!65.08!FOSB;;chr12:66218573..66218596,+!p7@HMGA2!0.58!4.56!HMGA2;;chr3:141105705..141105770,+!p4@ZBTB38!0.58!3.58!ZBTB38;;chr15:66994561..66994597,+!p2@SMAD6!0.57!7.48!SMAD6;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.57!6.83!SOHLH2;;chr5:72744562..72744573,-!p3@FOXD1!0.57!3.58!FOXD1;;chr7:14028743..14028799,-!p3@ETV1!0.57!3.58!ETV1;;chr3:52001426..52001447,-!p3@PCBP4!0.56!8.79!PCBP4;;chr20:2673383..2673441,+!p1@EBF4!0.56!4.56!EBF4;;chr1:170632959..170632987,+!p4@PRRX1!0.56!2.93!PRRX1;;chr20:30433396..30433414,-!p1@FOXS1!0.56!2.60!FOXS1;;chr2:45169233..45169244,+!p10@SIX3!0.56!2.60!SIX3;;chr2:63277978..63277995,+!p2@OTX1!0.56!2.60!OTX1;;chr4:299227..299272,-!p1@ZNF732!0.56!2.60!ZNF732;;chr15:66994885..66994904,+!p7@SMAD6!0.56!2.60!SMAD6;;chr15:67391010..67391046,+!p13@SMAD3!0.56!2.60!SMAD3;;chr16:86612320..86612394,+!p1@FOXL1!0.56!2.60!FOXL1;;chr6:34204672..34204692,+!p1@HMGA1!0.55!368.65!HMGA1;;chr9:114287433..114287513,+!p1@ZNF483!0.55!7.81!ZNF483;;chr6:41514078..41514158,+!p1@FOXP4!0.54!27.98!FOXP4;;chr11:46299199..46299233,+!p1@CREB3L1!0.54!15.94!CREB3L1;;chr2:71127699..71127744,+!p1@VAX2!0.54!5.86!VAX2;;chr15:37390850..37390909,-!p3@MEIS2!0.54!5.53!MEIS2;;chr2:25475120..25475176,-!p2@DNMT3A!0.54!3.58!DNMT3A;;chr6:21597283..21597312,+!p7@SOX4!0.54!3.58!SOX4;;chr5:76383070..76383117,-!p3@ZBED3!0.53!5.53!ZBED3;;chr8:128750555..128750609,+!p5@MYC!0.53!5.53!MYC;;chr3:52001396..52001425,-!p4@PCBP4!0.53!4.88!PCBP4;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.53!4.56!MEIS3P1;;chr19:49864746..49864780,-!p2@TEAD2!0.53!3.58!TEAD2;;chr17:46126136..46126152,+!p1@NFE2L1!0.52!154.23!NFE2L1;;chr19:45909594..45909625,-!p2@PPP1R13L!0.52!13.34!PPP1R13L;;chr19:53758058..53758088,-!p2@ZNF677!0.52!9.44!ZNF677;;chr6:126102254..126102289,+!p5@NCOA7!0.52!7.81!NCOA7;;chr18:3450293..3450304,+!p4@TGIF1!0.52!6.83!TGIF1;;chr3:12329397..12329433,+!p2@PPARG!0.52!6.18!PPARG;;chr8:60031682..60031710,-!p2@TOX!0.52!4.23!TOX;;chr8:128750983..128751021,+!p11@MYC!0.52!3.58!MYC;;chr9:126774091..126774098,+!p4@LHX2!0.52!2.28!LHX2;;chr1:170632439..170632465,+!p11@PRRX1!0.52!2.28!PRRX1;;chr1:2985566..2985608,+!p3@PRDM16!0.52!2.28!PRDM16;;chr2:45169172..45169177,+!p11@SIX3!0.52!2.28!SIX3;;chr10:28032421..28032494,-!p2@MKX!0.52!2.28!MKX;;chr11:125034605..125034636,+!p2@PKNOX2!0.52!2.28!PKNOX2;;chr22:39916558..39916579,+!p1@ATF4!0.51!859.32!ATF4;;chr2:60780607..60780624,-!p2@BCL11A!0.51!8.46!BCL11A;;chr20:45142154..45142227,-!p1@ZNF334!0.51!5.21!ZNF334;;chr19:22817119..22817145,+!p1@ZNF492!0.51!4.23!ZNF492;;chr15:96869292..96869320,+!p15@NR2F2!0.51!3.58!NR2F2;;chr19:57183114..57183145,-!p1@ZNF835!0.51!2.60!ZNF835;;chr3:170076223..170076242,+!p6@SKIL!0.51!2.60!SKIL;;chr17:7590797..7590815,-!p1@TP53!0.50!125.27!TP53;;chr5:133450365..133450444,+!p1@TCF7!0.50!12.69!TCF7;;chr20:48807456..48807475,+!p3@CEBPB!0.50!4.88!CEBPB;;chr15:96869255..96869291,+!p6@NR2F2!0.50!4.56!NR2F2;;chr17:38504601..38504634,+!p9@RARA!0.50!2.60!RARA;;chr19:42759266..42759290,-!p1@ERF!0.49!88.83!ERF;;chr15:37392724..37392757,-!p1@MEIS2!0.49!12.36!MEIS2;;chr11:62369108..62369183,-!p3@MTA2!0.48!35.14!MTA2;;chr7:64838754..64838778,+!p1@ZNF92!0.48!26.03!ZNF92;;chr9:14314131..14314147,-!p2@NFIB!0.48!14.64!NFIB;;chr17:4981745..4981810,+!p1@ZFP3!0.48!13.02!ZFP3;;chr9:128509663..128509715,+!p1@PBX3!0.48!8.79!PBX3;;chr5:92918894..92918912,+!p2@NR2F1!0.48!8.46!NR2F1;;chr12:125002827..125002855,-!p5@NCOR2!0.48!3.25!NCOR2;;chr5:92919068..92919082,+!p5@NR2F1!0.48!2.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| |expression_enrichment_score=chr14:57277178..57277203,-!p1@OTX2!2.11!127.22!OTX2;;chr11:61520075..61520136,+!p1@C11orf9!1.91!163.01!C11orf9;;chr9:126774018..126774055,+!p1@LHX2!1.78!58.57!LHX2;;chr11:61522844..61522875,+!p2@C11orf9!1.61!40.02!C11orf9;;chr15:42749722..42749739,-!p2@ZFP106!1.58!65.40!ZFP106;;chr11:31832658..31832681,-!p1@PAX6!1.48!29.28!PAX6;;chr14:57272369..57272391,-!p2@OTX2!1.47!28.63!OTX2;;chr14:57277098..57277116,-!p3@OTX2!1.30!18.87!OTX2;;chr19:48325184..48325211,+!p1@CRX!1.30!18.87!CRX;;chr3:25469724..25469773,+!p1@RARB!1.28!25.70!RARB;;chr2:45169193..45169219,+!p3@SIX3!1.28!17.90!SIX3;;chr9:126773880..126773895,+!p2@LHX2!1.28!17.90!LHX2;;chr7:100065686..100065701,-!p2@TSC22D4!1.24!16.27!TSC22D4;;chr2:45168875..45168916,+!p1@SIX3!1.22!15.62!SIX3;;chr2:5832508..5832524,+!p1@SOX11!1.19!14.32!SOX11;;chr9:126774058..126774081,+!p3@LHX2!1.18!13.99!LHX2;;chr2:45169143..45169167,+!p5@SIX3!1.14!12.69!SIX3;;chr17:46132044..46132080,+!p4@NFE2L1!1.14!12.69!NFE2L1;;chr6:34204921..34204939,+!p3@HMGA1!1.13!376.79!HMGA1;;chr6:1312325..1312340,+!p1@FOXQ1!1.12!19.85!FOXQ1;;chr15:83953397..83953425,-!p1@BNC1!1.12!13.99!BNC1;;chr3:52001448..52001478,-!p2@PCBP4!1.07!151.30!PCBP4;;chr3:141121847..141121868,+!p5@ZBTB38!1.06!15.94!ZBTB38;;chr1:41827095..41827155,+!p1@FOXO6!1.03!13.34!FOXO6;;chr18:56940611..56940660,-!p1@RAX!1.03!9.76!RAX;;chr9:86594363..86594374,-!p@chr9:86594363..86594374,-!0.99!8.79!HNRPK;;chr2:45168834..45168847,+!p2@SIX3!0.99!8.79!SIX3;;chr12:66218255..66218304,+!p3@HMGA2!0.98!23.75!HMGA2;;chr12:66218598..66218645,+!p2@HMGA2!0.97!39.37!HMGA2;;chr2:46524897..46524911,+!p2@EPAS1!0.93!21.80!EPAS1;;chr6:21593973..21593988,+!p1@SOX4!0.92!274.29!SOX4;;chr17:38498402..38498445,+!p3@RARA!0.92!27.33!RARA;;chr6:21597765..21597779,+!p2@SOX4!0.91!60.52!SOX4;;chr7:64838786..64838809,+!p2@ZNF92!0.91!42.62!ZNF92;;chr2:63277948..63277974,+!p1@OTX1!0.91!7.16!OTX1;;chr3:141150883..141150961,+!p6@ZBTB38!0.91!7.16!ZBTB38;;chr19:50432453..50432468,+!p1@ATF5!0.89!394.68!ATF5;;chr12:66218836..66218888,+!p1@HMGA2!0.89!66.05!HMGA2;;chr12:66218183..66218209,+!p4@HMGA2!0.89!13.34!HMGA2;;chr12:66218378..66218401,+!p6@HMGA2!0.89!10.74!HMGA2;;chr14:57277163..57277168,-!p4@OTX2!0.88!6.51!OTX2;;chr1:2985760..2985774,+!p1@PRDM16!0.88!6.51!PRDM16;;chr11:31832610..31832639,-!p5@PAX6!0.86!6.18!PAX6;;chr5:92918919..92918942,+!p1@NR2F1!0.85!28.63!NR2F1;;chr13:72441315..72441454,-!p1@DACH1!0.84!12.36!DACH1;;chr16:1031762..1031781,+!p1@SOX8!0.84!5.86!SOX8;;chr18:19749541..19749557,+!p1@GATA6!0.83!19.20!GATA6;;chr2:5832493..5832507,+!p2@SOX11!0.82!5.53!SOX11;;chr8:72756063..72756125,-!p1@MSC!0.81!11.71!MSC;;chr15:66994663..66994680,+!p1@SMAD6!0.79!13.02!SMAD6;;chr2:46524537..46524553,+!p1@EPAS1!0.78!539.48!EPAS1;;chr5:178368186..178368238,+!p1@ZNF454!0.78!9.44!ZNF454;;chr8:72756667..72756736,-!p2@MSC!0.78!8.13!MSC;;chr3:170076314..170076334,+!p2@SKIL!0.78!6.83!SKIL;;chr18:56940663..56940691,-!p2@RAX!0.77!4.88!RAX;;chr13:73633131..73633149,+!p1@KLF5!0.76!55.64!KLF5;;chr1:170633348..170633399,+!p2@PRRX1!0.75!6.51!PRRX1;;chr17:38498594..38498661,+!p2@RARA!0.74!16.59!RARA;;chr8:72756637..72756664,-!p3@MSC!0.74!5.21!MSC;;chr8:72755987..72756002,-!p7@MSC!0.74!4.56!MSC;;chr2:45168856..45168867,+!p7@SIX3!0.74!4.56!SIX3;;chr2:45168959..45168990,+!p6@SIX3!0.74!4.56!SIX3;;chr3:141121820..141121838,+!p9@ZBTB38!0.74!4.56!ZBTB38;;chr5:72744594..72744609,-!p1@FOXD1!0.72!21.80!FOXD1;;chr2:45168997..45169020,+!p4@SIX3!0.72!4.23!SIX3;;chr6:19837592..19837621,+!p1@ID4!0.70!27.98!ID4;;chr5:124082322..124082364,-!p1@ZNF608!0.70!11.39!ZNF608;;chr1:209979467..209979494,-!p1@IRF6!0.70!4.56!IRF6;;chr12:80084737..80084763,-!p3@PAWR!0.69!16.27!PAWR;;chr6:126102292..126102329,+!p3@NCOA7!0.69!14.32!NCOA7;;chr7:101917407..101917443,+!p3@CUX1!0.69!3.90!CUX1;;chr11:61522820..61522823,+!p9@C11orf9!0.69!3.90!C11orf9;;chr22:38380543..38380569,-!p1@SOX10!0.69!3.90!SOX10;;chr7:28448995..28449011,+!p4@CREB5!0.68!5.53!CREB5;;chr8:72756023..72756055,-!p6@MSC!0.68!4.88!MSC;;chr12:26277956..26277980,-!p1@BHLHE41!0.67!14.97!BHLHE41;;chr12:125003087..125003141,-!p4@NCOR2!0.67!4.88!NCOR2;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.66!41.00!GLIS2;;chr2:46524878..46524891,+!p3@EPAS1!0.66!6.83!EPAS1;;chr12:66218152..66218174,+!p10@HMGA2!0.66!3.90!HMGA2;;chr11:125034640..125034655,+!p1@PKNOX2!0.66!3.58!PKNOX2;;chr19:47523058..47523114,+!p1@NPAS1!0.66!3.58!NPAS1;;chr8:128748308..128748324,+!p2@MYC!0.65!113.23!MYC;;chr15:37390482..37390572,-!p7@MEIS2!0.64!4.88!MEIS2;;chr3:128206762..128206781,-!p2@GATA2!0.63!23.75!GATA2;;chr12:124873852..124873881,-!p3@NCOR2!0.63!23.10!NCOR2;;chr11:12696071..12696086,+!p3@TEAD1!0.63!4.56!TEAD1;;chr11:31832687..31832704,-!p6@PAX6!0.63!3.25!PAX6;;chr11:31832862..31832884,-!p2@PAX6!0.63!3.25!PAX6;;chr11:31839488..31839515,-!p3@PAX6!0.63!3.25!PAX6;;chr12:66218420..66218439,+!p12@HMGA2!0.63!3.25!HMGA2;;chr19:46800289..46800327,+!p2@HIF3A!0.63!3.25!HIF3A;;chr1:2985726..2985752,+!p2@PRDM16!0.63!3.25!PRDM16;;chr12:124873357..124873401,-!p1@NCOR2!0.62!44.25!NCOR2;;chr16:88519669..88519726,+!p1@ZFPM1!0.62!34.16!ZFPM1;;chr9:73029219..73029289,-!p2@KLF9!0.62!11.06!KLF9;;chr12:66218212..66218244,+!p5@HMGA2!0.62!4.88!HMGA2;;chr20:6748325..6748352,+!p1@BMP2!0.62!4.88!BMP2;;chr12:26277817..26277863,-!p2@BHLHE41!0.62!4.56!BHLHE41;;chr2:46602901..46602926,+!p7@EPAS1!0.62!4.56!EPAS1;;chr1:212782094..212782109,+!p1@ATF3!0.61!101.84!ATF3;;chr13:45151259..45151326,-!p2@TSC22D1!0.61!21.80!TSC22D1;;chr5:92919100..92919135,+!p3@NR2F1!0.61!3.90!NR2F1;;chr17:38465441..38465481,+!p6@RARA!0.61!3.90!RARA;;chr1:170632285..170632309,+!p1@PRRX1!0.61!3.58!PRRX1;;chr3:193853927..193853944,+!p1@HES1!0.60!119.09!HES1;;chr7:6655225..6655279,+!p1@ENST00000457543!0.60!4.88!ZNF853;;chr18:19749386..19749404,+!p2@GATA6!0.60!4.56!GATA6;;chr8:86089369..86089408,+!p1@E2F5!0.59!9.11!E2F5;;chr7:113726357..113726443,+!p1@FOXP2!0.59!5.53!FOXP2;;chrX:84498989..84499003,+!p1@ZNF711!0.59!4.23!ZNF711;;chr12:66218443..66218461,+!p8@HMGA2!0.59!3.90!HMGA2;;chr15:37391588..37391604,-!p11@MEIS2!0.59!3.90!MEIS2;;chr17:38498510..38498540,+!p7@RARA!0.59!3.58!RARA;;chr3:25469815..25469866,+!p3@RARB!0.59!2.93!RARB;;chr3:25470156..25470227,+!p2@RARB!0.59!2.93!RARB;;chr11:46299443..46299459,+!p4@CREB3L1!0.59!2.93!CREB3L1;;chr12:66218904..66218913,+!p11@HMGA2!0.59!2.93!HMGA2;;chr19:9473676..9473712,+!p2@ZNF177,p2@ZNF559-ZNF177!0.59!2.93!ZNF177;;chr20:42574529..42574563,+!p3@TOX2!0.59!2.93!TOX2;;chr18:3450161..3450183,+!p1@TGIF1!0.58!118.76!TGIF1;;chr19:45971246..45971265,+!p1@FOSB!0.58!65.08!FOSB;;chr12:66218573..66218596,+!p7@HMGA2!0.58!4.56!HMGA2;;chr3:141105705..141105770,+!p4@ZBTB38!0.58!3.58!ZBTB38;;chr15:66994561..66994597,+!p2@SMAD6!0.57!7.48!SMAD6;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.57!6.83!SOHLH2;;chr5:72744562..72744573,-!p3@FOXD1!0.57!3.58!FOXD1;;chr7:14028743..14028799,-!p3@ETV1!0.57!3.58!ETV1;;chr3:52001426..52001447,-!p3@PCBP4!0.56!8.79!PCBP4;;chr20:2673383..2673441,+!p1@EBF4!0.56!4.56!EBF4;;chr1:170632959..170632987,+!p4@PRRX1!0.56!2.93!PRRX1;;chr20:30433396..30433414,-!p1@FOXS1!0.56!2.60!FOXS1;;chr2:45169233..45169244,+!p10@SIX3!0.56!2.60!SIX3;;chr2:63277978..63277995,+!p2@OTX1!0.56!2.60!OTX1;;chr4:299227..299272,-!p1@ZNF732!0.56!2.60!ZNF732;;chr15:66994885..66994904,+!p7@SMAD6!0.56!2.60!SMAD6;;chr15:67391010..67391046,+!p13@SMAD3!0.56!2.60!SMAD3;;chr16:86612320..86612394,+!p1@FOXL1!0.56!2.60!FOXL1;;chr6:34204672..34204692,+!p1@HMGA1!0.55!368.65!HMGA1;;chr9:114287433..114287513,+!p1@ZNF483!0.55!7.81!ZNF483;;chr6:41514078..41514158,+!p1@FOXP4!0.54!27.98!FOXP4;;chr11:46299199..46299233,+!p1@CREB3L1!0.54!15.94!CREB3L1;;chr2:71127699..71127744,+!p1@VAX2!0.54!5.86!VAX2;;chr15:37390850..37390909,-!p3@MEIS2!0.54!5.53!MEIS2;;chr2:25475120..25475176,-!p2@DNMT3A!0.54!3.58!DNMT3A;;chr6:21597283..21597312,+!p7@SOX4!0.54!3.58!SOX4;;chr5:76383070..76383117,-!p3@ZBED3!0.53!5.53!ZBED3;;chr8:128750555..128750609,+!p5@MYC!0.53!5.53!MYC;;chr3:52001396..52001425,-!p4@PCBP4!0.53!4.88!PCBP4;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.53!4.56!MEIS3P1;;chr19:49864746..49864780,-!p2@TEAD2!0.53!3.58!TEAD2;;chr17:46126136..46126152,+!p1@NFE2L1!0.52!154.23!NFE2L1;;chr19:45909594..45909625,-!p2@PPP1R13L!0.52!13.34!PPP1R13L;;chr19:53758058..53758088,-!p2@ZNF677!0.52!9.44!ZNF677;;chr6:126102254..126102289,+!p5@NCOA7!0.52!7.81!NCOA7;;chr18:3450293..3450304,+!p4@TGIF1!0.52!6.83!TGIF1;;chr3:12329397..12329433,+!p2@PPARG!0.52!6.18!PPARG;;chr8:60031682..60031710,-!p2@TOX!0.52!4.23!TOX;;chr8:128750983..128751021,+!p11@MYC!0.52!3.58!MYC;;chr9:126774091..126774098,+!p4@LHX2!0.52!2.28!LHX2;;chr1:170632439..170632465,+!p11@PRRX1!0.52!2.28!PRRX1;;chr1:2985566..2985608,+!p3@PRDM16!0.52!2.28!PRDM16;;chr2:45169172..45169177,+!p11@SIX3!0.52!2.28!SIX3;;chr10:28032421..28032494,-!p2@MKX!0.52!2.28!MKX;;chr11:125034605..125034636,+!p2@PKNOX2!0.52!2.28!PKNOX2;;chr22:39916558..39916579,+!p1@ATF4!0.51!859.32!ATF4;;chr2:60780607..60780624,-!p2@BCL11A!0.51!8.46!BCL11A;;chr20:45142154..45142227,-!p1@ZNF334!0.51!5.21!ZNF334;;chr19:22817119..22817145,+!p1@ZNF492!0.51!4.23!ZNF492;;chr15:96869292..96869320,+!p15@NR2F2!0.51!3.58!NR2F2;;chr19:57183114..57183145,-!p1@ZNF835!0.51!2.60!ZNF835;;chr3:170076223..170076242,+!p6@SKIL!0.51!2.60!SKIL;;chr17:7590797..7590815,-!p1@TP53!0.50!125.27!TP53;;chr5:133450365..133450444,+!p1@TCF7!0.50!12.69!TCF7;;chr20:48807456..48807475,+!p3@CEBPB!0.50!4.88!CEBPB;;chr15:96869255..96869291,+!p6@NR2F2!0.50!4.56!NR2F2;;chr17:38504601..38504634,+!p9@RARA!0.50!2.60!RARA;;chr19:42759266..42759290,-!p1@ERF!0.49!88.83!ERF;;chr15:37392724..37392757,-!p1@MEIS2!0.49!12.36!MEIS2;;chr11:62369108..62369183,-!p3@MTA2!0.48!35.14!MTA2;;chr7:64838754..64838778,+!p1@ZNF92!0.48!26.03!ZNF92;;chr9:14314131..14314147,-!p2@NFIB!0.48!14.64!NFIB;;chr17:4981745..4981810,+!p1@ZFP3!0.48!13.02!ZFP3;;chr9:128509663..128509715,+!p1@PBX3!0.48!8.79!PBX3;;chr5:92918894..92918912,+!p2@NR2F1!0.48!8.46!NR2F1;;chr12:125002827..125002855,-!p5@NCOR2!0.48!3.25!NCOR2;;chr5:92919068..92919082,+!p5@NR2F1!0.48!2.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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000147;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002586;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000966;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000970;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001781;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007625 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Retinal%2520Pigment%2520Epithelial%2520Cells%252c%2520donor3.CNhs12733.11689-122I6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Retinal%2520Pigment%2520Epithelial%2520Cells%252c%2520donor3.CNhs12733.11689-122I6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Retinal%2520Pigment%2520Epithelial%2520Cells%252c%2520donor3.CNhs12733.11689-122I6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Retinal%2520Pigment%2520Epithelial%2520Cells%252c%2520donor3.CNhs12733.11689-122I6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Retinal%2520Pigment%2520Epithelial%2520Cells%252c%2520donor3.CNhs12733.11689-122I6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11689-122I6 | |id=FF:11689-122I6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000158 | ||
|is_obsolete= | |||
|library_id=CNhs12733 | |||
|library_id_phase_based=2:CNhs12733 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11689 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11689 | |||
|name=Retinal Pigment Epithelial Cells, donor3 | |name=Retinal Pigment Epithelial Cells, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12733,LSID960,release012,COMPLETED | |profile_hcage=CNhs12733,LSID960,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,-0.27483329820609,-0.221233617193838,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.147942571412871,0,0,0,0,0,0,0,0,0.210863042648906,0,0,0,0,0,0,0.122339886766207,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.122339886766207,0,0,0,0,0,0,0,0,-0.0936405020795325,0,0,0,0,0,0,0,0,0,0,0.159236265328519,-0.150027459312766,0,0,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0352036505393575,0,0,0,-0.134268397006542,-0.154232232462649,0,0,0,0,0,0 | |||
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| |||
|rna_box=122 | |rna_box=122 | ||
|rna_catalog_number=SC6545 | |rna_catalog_number=SC6545 | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 77: | Line 99: | ||
|sample_tissue=eye | |sample_tissue=eye | ||
|top_motifs=HOX{A6,A7,B6,B7}:2.3380136313;bHLH_family:2.13861081923;CRX:1.8579068626;MYOD1:1.82739808369;NKX2-1,4:1.41975001485;NANOG:1.33052991749;EN1,2:1.29920994634;NR3C1:1.28025603887;PAX1,9:1.15881046658;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.08086196925;RXR{A,B,G}:1.03822003924;PAX8:1.00635883071;EBF1:0.994424267142;ADNP_IRX_SIX_ZHX:0.972811114742;SREBF1,2:0.950591897996;SOX17:0.944346684071;RFX1:0.931233558205;SMAD1..7,9:0.910599845692;TLX1..3_NFIC{dimer}:0.868306950862;ZNF148:0.839666044379;LHX3,4:0.815143495045;ESRRA:0.79193029875;RBPJ:0.78895763795;HOXA9_MEIS1:0.709554443025;ZEB1:0.684269421289;TEAD1:0.670125489329;TFAP4:0.651654297908;GTF2A1,2:0.648795409825;PAX5:0.586734842498;GLI1..3:0.584518993309;NKX6-1,2:0.579472761231;VSX1,2:0.553099729664;HSF1,2:0.545604779256;ELK1,4_GABP{A,B1}:0.523257505133;JUN:0.510325017175;TFAP2{A,C}:0.482432426832;ZNF143:0.480186484404;EVI1:0.479586332416;ZBTB6:0.478167977608;ARID5B:0.46815223638;NFIL3:0.454632410301;CDC5L:0.453621970549;HES1:0.452490559062;LMO2:0.449207252856;NFE2L1:0.435107023907;STAT5{A,B}:0.427585637683;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.420816893941;NR6A1:0.395675907859;TBP:0.393964779238;PRRX1,2:0.381277388639;PATZ1:0.362654538986;HIF1A:0.330034001534;CEBPA,B_DDIT3:0.325005906935;HAND1,2:0.324079286626;PBX1:0.317795401252;TEF:0.314495424411;T:0.312668321232;SP1:0.294077212026;NRF1:0.273922095444;NKX2-2,8:0.270347152174;MAFB:0.258755792725;MYFfamily:0.255147226632;SNAI1..3:0.254055597837;HNF4A_NR2F1,2:0.244798438588;TP53:0.243693108461;MEF2{A,B,C,D}:0.238878145772;ZNF423:0.223238816836;ALX1:0.219549900714;AIRE:0.216752483161;SOX2:0.206102203595;STAT1,3:0.201234252461;IKZF1:0.18129572246;ZIC1..3:0.180317523508;TAL1_TCF{3,4,12}:0.177588382005;ATF4:0.167447031422;YY1:0.161433675284;FOSL2:0.139659941463;ATF2:0.13698281635;NHLH1,2:0.126688989736;ONECUT1,2:0.0979383139334;AHR_ARNT_ARNT2:0.0886563646502;KLF4:0.0874119435334;GFI1B:0.0865309936148;PDX1:0.0854637609255;GTF2I:0.0788000910387;MTE{core}:0.0697923857037;FOX{D1,D2}:0.0681779891719;HIC1:0.0575956139523;SPZ1:0.0543601470711;MTF1:0.0291414768054;RFX2..5_RFXANK_RFXAP:0.0253687755787;PPARG:0.0230295928032;TFCP2:0.00981568441276;NR5A1,2:0.00726037482316;HLF:0.00392693144911;SOX{8,9,10}:0.00197183445248;UFEwm:0.00196264943297;REST:0.00102322806183;SRF:-0.00387238966186;GFI1:-0.00642180095166;NFIX:-0.00891362414466;SOX5:-0.00972219802868;HNF1A:-0.0200726056333;XBP1:-0.0221181086807;FOS_FOS{B,L1}_JUN{B,D}:-0.0293491290059;ZFP161:-0.0310378270842;E2F1..5:-0.0355014028408;PAX6:-0.0444521858454;BACH2:-0.0460829278575;HOX{A5,B5}:-0.0517751220058;MAZ:-0.0529346383613;FOXL1:-0.0617974421946;RREB1:-0.081494380683;NKX3-1:-0.0928637926317;MYBL2:-0.10747493212;FOX{F1,F2,J1}:-0.10855136914;NFATC1..3:-0.114033923231;POU6F1:-0.115351353579;FOX{I1,J2}:-0.137008716164;GATA6:-0.14578440643;ALX4:-0.146039656135;CUX2:-0.153765729032;NFE2:-0.154377151082;OCT4_SOX2{dimer}:-0.155539741613;FOXM1:-0.161453062754;NR1H4:-0.167882839898;TBX4,5:-0.171363612086;TFAP2B:-0.174619654141;PRDM1:-0.175260996311;RXRA_VDR{dimer}:-0.178921443681;HMGA1,2:-0.223122686917;CDX1,2,4:-0.224868095562;FOXQ1:-0.229495336379;NFY{A,B,C}:-0.235850107789;HOX{A4,D4}:-0.236276298912;FOXN1:-0.239903658809;TFDP1:-0.255046448544;FOXD3:-0.256749528354;HBP1_HMGB_SSRP1_UBTF:-0.267482846902;MYB:-0.271426666779;GCM1,2:-0.286265166751;LEF1_TCF7_TCF7L1,2:-0.300383970704;NFKB1_REL_RELA:-0.31907617412;FOXA2:-0.332581731003;NKX3-2:-0.353313023998;FOXO1,3,4:-0.379929489561;RORA:-0.383953535124;XCPE1{core}:-0.390918330496;AR:-0.405194386334;GZF1:-0.409870075935;POU3F1..4:-0.411526603231;EGR1..3:-0.414225848738;MZF1:-0.417752707325;NKX2-3_NKX2-5:-0.443530452279;FOXP3:-0.443799553489;PAX2:-0.44952739264;MED-1{core}:-0.476528944093;CREB1:-0.481082828996;BPTF:-0.490451135851;RUNX1..3:-0.494027307219;ESR1:-0.515290574277;IKZF2:-0.526006007647;ZNF238:-0.555545491614;ELF1,2,4:-0.572488385299;SPIB:-0.575439573576;ETS1,2:-0.583013457098;PAX4:-0.593581939079;POU1F1:-0.613131996006;HMX1:-0.645151662718;DBP:-0.647281200965;GATA4:-0.647640244447;POU2F1..3:-0.651837780683;NFE2L2:-0.666427691597;SPI1:-0.670259893862;ATF5_CREB3:-0.680715999471;EP300:-0.680869801047;POU5F1:-0.680968799628;STAT2,4,6:-0.687233411232;TOPORS:-0.702235576254;DMAP1_NCOR{1,2}_SMARC:-0.796313194714;TGIF1:-0.803680980767;IRF7:-0.842338627958;FOXP1:-0.876358659372;IRF1,2:-0.916156822185;TLX2:-0.923405154024;PITX1..3:-0.927451853266;BREu{core}:-0.931289050114;PAX3,7:-0.962153780433;ZNF384:-1.02669805313;ZBTB16:-1.04136618715;ATF6:-1.16100010966;NANOG{mouse}:-1.3235861872 | |top_motifs=HOX{A6,A7,B6,B7}:2.3380136313;bHLH_family:2.13861081923;CRX:1.8579068626;MYOD1:1.82739808369;NKX2-1,4:1.41975001485;NANOG:1.33052991749;EN1,2:1.29920994634;NR3C1:1.28025603887;PAX1,9:1.15881046658;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.08086196925;RXR{A,B,G}:1.03822003924;PAX8:1.00635883071;EBF1:0.994424267142;ADNP_IRX_SIX_ZHX:0.972811114742;SREBF1,2:0.950591897996;SOX17:0.944346684071;RFX1:0.931233558205;SMAD1..7,9:0.910599845692;TLX1..3_NFIC{dimer}:0.868306950862;ZNF148:0.839666044379;LHX3,4:0.815143495045;ESRRA:0.79193029875;RBPJ:0.78895763795;HOXA9_MEIS1:0.709554443025;ZEB1:0.684269421289;TEAD1:0.670125489329;TFAP4:0.651654297908;GTF2A1,2:0.648795409825;PAX5:0.586734842498;GLI1..3:0.584518993309;NKX6-1,2:0.579472761231;VSX1,2:0.553099729664;HSF1,2:0.545604779256;ELK1,4_GABP{A,B1}:0.523257505133;JUN:0.510325017175;TFAP2{A,C}:0.482432426832;ZNF143:0.480186484404;EVI1:0.479586332416;ZBTB6:0.478167977608;ARID5B:0.46815223638;NFIL3:0.454632410301;CDC5L:0.453621970549;HES1:0.452490559062;LMO2:0.449207252856;NFE2L1:0.435107023907;STAT5{A,B}:0.427585637683;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.420816893941;NR6A1:0.395675907859;TBP:0.393964779238;PRRX1,2:0.381277388639;PATZ1:0.362654538986;HIF1A:0.330034001534;CEBPA,B_DDIT3:0.325005906935;HAND1,2:0.324079286626;PBX1:0.317795401252;TEF:0.314495424411;T:0.312668321232;SP1:0.294077212026;NRF1:0.273922095444;NKX2-2,8:0.270347152174;MAFB:0.258755792725;MYFfamily:0.255147226632;SNAI1..3:0.254055597837;HNF4A_NR2F1,2:0.244798438588;TP53:0.243693108461;MEF2{A,B,C,D}:0.238878145772;ZNF423:0.223238816836;ALX1:0.219549900714;AIRE:0.216752483161;SOX2:0.206102203595;STAT1,3:0.201234252461;IKZF1:0.18129572246;ZIC1..3:0.180317523508;TAL1_TCF{3,4,12}:0.177588382005;ATF4:0.167447031422;YY1:0.161433675284;FOSL2:0.139659941463;ATF2:0.13698281635;NHLH1,2:0.126688989736;ONECUT1,2:0.0979383139334;AHR_ARNT_ARNT2:0.0886563646502;KLF4:0.0874119435334;GFI1B:0.0865309936148;PDX1:0.0854637609255;GTF2I:0.0788000910387;MTE{core}:0.0697923857037;FOX{D1,D2}:0.0681779891719;HIC1:0.0575956139523;SPZ1:0.0543601470711;MTF1:0.0291414768054;RFX2..5_RFXANK_RFXAP:0.0253687755787;PPARG:0.0230295928032;TFCP2:0.00981568441276;NR5A1,2:0.00726037482316;HLF:0.00392693144911;SOX{8,9,10}:0.00197183445248;UFEwm:0.00196264943297;REST:0.00102322806183;SRF:-0.00387238966186;GFI1:-0.00642180095166;NFIX:-0.00891362414466;SOX5:-0.00972219802868;HNF1A:-0.0200726056333;XBP1:-0.0221181086807;FOS_FOS{B,L1}_JUN{B,D}:-0.0293491290059;ZFP161:-0.0310378270842;E2F1..5:-0.0355014028408;PAX6:-0.0444521858454;BACH2:-0.0460829278575;HOX{A5,B5}:-0.0517751220058;MAZ:-0.0529346383613;FOXL1:-0.0617974421946;RREB1:-0.081494380683;NKX3-1:-0.0928637926317;MYBL2:-0.10747493212;FOX{F1,F2,J1}:-0.10855136914;NFATC1..3:-0.114033923231;POU6F1:-0.115351353579;FOX{I1,J2}:-0.137008716164;GATA6:-0.14578440643;ALX4:-0.146039656135;CUX2:-0.153765729032;NFE2:-0.154377151082;OCT4_SOX2{dimer}:-0.155539741613;FOXM1:-0.161453062754;NR1H4:-0.167882839898;TBX4,5:-0.171363612086;TFAP2B:-0.174619654141;PRDM1:-0.175260996311;RXRA_VDR{dimer}:-0.178921443681;HMGA1,2:-0.223122686917;CDX1,2,4:-0.224868095562;FOXQ1:-0.229495336379;NFY{A,B,C}:-0.235850107789;HOX{A4,D4}:-0.236276298912;FOXN1:-0.239903658809;TFDP1:-0.255046448544;FOXD3:-0.256749528354;HBP1_HMGB_SSRP1_UBTF:-0.267482846902;MYB:-0.271426666779;GCM1,2:-0.286265166751;LEF1_TCF7_TCF7L1,2:-0.300383970704;NFKB1_REL_RELA:-0.31907617412;FOXA2:-0.332581731003;NKX3-2:-0.353313023998;FOXO1,3,4:-0.379929489561;RORA:-0.383953535124;XCPE1{core}:-0.390918330496;AR:-0.405194386334;GZF1:-0.409870075935;POU3F1..4:-0.411526603231;EGR1..3:-0.414225848738;MZF1:-0.417752707325;NKX2-3_NKX2-5:-0.443530452279;FOXP3:-0.443799553489;PAX2:-0.44952739264;MED-1{core}:-0.476528944093;CREB1:-0.481082828996;BPTF:-0.490451135851;RUNX1..3:-0.494027307219;ESR1:-0.515290574277;IKZF2:-0.526006007647;ZNF238:-0.555545491614;ELF1,2,4:-0.572488385299;SPIB:-0.575439573576;ETS1,2:-0.583013457098;PAX4:-0.593581939079;POU1F1:-0.613131996006;HMX1:-0.645151662718;DBP:-0.647281200965;GATA4:-0.647640244447;POU2F1..3:-0.651837780683;NFE2L2:-0.666427691597;SPI1:-0.670259893862;ATF5_CREB3:-0.680715999471;EP300:-0.680869801047;POU5F1:-0.680968799628;STAT2,4,6:-0.687233411232;TOPORS:-0.702235576254;DMAP1_NCOR{1,2}_SMARC:-0.796313194714;TGIF1:-0.803680980767;IRF7:-0.842338627958;FOXP1:-0.876358659372;IRF1,2:-0.916156822185;TLX2:-0.923405154024;PITX1..3:-0.927451853266;BREu{core}:-0.931289050114;PAX3,7:-0.962153780433;ZNF384:-1.02669805313;ZBTB16:-1.04136618715;ATF6:-1.16100010966;NANOG{mouse}:-1.3235861872 | ||
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Revision as of 21:01, 10 August 2017
| Name: | Retinal Pigment Epithelial Cells, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12733 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12733
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12733
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.622 |
| 10 | 10 | 0.00906 |
| 100 | 100 | 0.308 |
| 101 | 101 | 0.366 |
| 102 | 102 | 0.723 |
| 103 | 103 | 0.537 |
| 104 | 104 | 0.922 |
| 105 | 105 | 0.545 |
| 106 | 106 | 0.0535 |
| 107 | 107 | 0.864 |
| 108 | 108 | 0.777 |
| 109 | 109 | 0.123 |
| 11 | 11 | 0.455 |
| 110 | 110 | 0.552 |
| 111 | 111 | 0.0919 |
| 112 | 112 | 0.133 |
| 113 | 113 | 0.00982 |
| 114 | 114 | 0.405 |
| 115 | 115 | 0.284 |
| 116 | 116 | 0.935 |
| 117 | 117 | 0.153 |
| 118 | 118 | 0.293 |
| 119 | 119 | 0.069 |
| 12 | 12 | 0.696 |
| 120 | 120 | 0.75 |
| 121 | 121 | 0.9 |
| 122 | 122 | 0.149 |
| 123 | 123 | 5.88927e-4 |
| 124 | 124 | 0.822 |
| 125 | 125 | 0.262 |
| 126 | 126 | 0.333 |
| 127 | 127 | 0.456 |
| 128 | 128 | 0.177 |
| 129 | 129 | 0.782 |
| 13 | 13 | 0.588 |
| 130 | 130 | 0.117 |
| 131 | 131 | 0.506 |
| 132 | 132 | 0.758 |
| 133 | 133 | 0.98 |
| 134 | 134 | 0.642 |
| 135 | 135 | 0.0376 |
| 136 | 136 | 0.442 |
| 137 | 137 | 0.605 |
| 138 | 138 | 0.0133 |
| 139 | 139 | 0.524 |
| 14 | 14 | 0.502 |
| 140 | 140 | 0.486 |
| 141 | 141 | 0.183 |
| 142 | 142 | 0.598 |
| 143 | 143 | 0.298 |
| 144 | 144 | 0.331 |
| 145 | 145 | 0.963 |
| 146 | 146 | 0.949 |
| 147 | 147 | 0.7 |
| 148 | 148 | 0.131 |
| 149 | 149 | 0.0329 |
| 15 | 15 | 0.796 |
| 150 | 150 | 0.269 |
| 151 | 151 | 0.305 |
| 152 | 152 | 0.0167 |
| 153 | 153 | 0.21 |
| 154 | 154 | 0.269 |
| 155 | 155 | 0.079 |
| 156 | 156 | 0.0688 |
| 157 | 157 | 0.0412 |
| 158 | 158 | 0.0123 |
| 159 | 159 | 0.305 |
| 16 | 16 | 0.192 |
| 160 | 160 | 0.976 |
| 161 | 161 | 0.606 |
| 162 | 162 | 0.294 |
| 163 | 163 | 0.572 |
| 164 | 164 | 0.351 |
| 165 | 165 | 0.215 |
| 166 | 166 | 0.881 |
| 167 | 167 | 0.215 |
| 168 | 168 | 0.695 |
| 169 | 169 | 0.536 |
| 17 | 17 | 0.623 |
| 18 | 18 | 0.717 |
| 19 | 19 | 0.742 |
| 2 | 2 | 0.884 |
| 20 | 20 | 0.152 |
| 21 | 21 | 0.787 |
| 22 | 22 | 0.316 |
| 23 | 23 | 0.299 |
| 24 | 24 | 0.9 |
| 25 | 25 | 0.955 |
| 26 | 26 | 0.0983 |
| 27 | 27 | 0.607 |
| 28 | 28 | 0.49 |
| 29 | 29 | 0.746 |
| 3 | 3 | 0.0999 |
| 30 | 30 | 0.0715 |
| 31 | 31 | 0.774 |
| 32 | 32 | 0.175 |
| 33 | 33 | 0.314 |
| 34 | 34 | 0.718 |
| 35 | 35 | 0.547 |
| 36 | 36 | 0.827 |
| 37 | 37 | 0.14 |
| 38 | 38 | 0.301 |
| 39 | 39 | 0.338 |
| 4 | 4 | 0.985 |
| 40 | 40 | 0.0689 |
| 41 | 41 | 0.0713 |
| 42 | 42 | 0.11 |
| 43 | 43 | 0.242 |
| 44 | 44 | 0.705 |
| 45 | 45 | 0.144 |
| 46 | 46 | 0.192 |
| 47 | 47 | 0.801 |
| 48 | 48 | 0.688 |
| 49 | 49 | 0.225 |
| 5 | 5 | 0.483 |
| 50 | 50 | 0.964 |
| 51 | 51 | 0.712 |
| 52 | 52 | 0.944 |
| 53 | 53 | 0.259 |
| 54 | 54 | 0.425 |
| 55 | 55 | 0.904 |
| 56 | 56 | 0.793 |
| 57 | 57 | 0.9 |
| 58 | 58 | 0.185 |
| 59 | 59 | 0.504 |
| 6 | 6 | 0.814 |
| 60 | 60 | 0.12 |
| 61 | 61 | 0.527 |
| 62 | 62 | 0.232 |
| 63 | 63 | 0.319 |
| 64 | 64 | 0.895 |
| 65 | 65 | 0.442 |
| 66 | 66 | 0.603 |
| 67 | 67 | 0.865 |
| 68 | 68 | 0.94 |
| 69 | 69 | 0.115 |
| 7 | 7 | 0.385 |
| 70 | 70 | 0.672 |
| 71 | 71 | 0.591 |
| 72 | 72 | 0.307 |
| 73 | 73 | 0.0849 |
| 74 | 74 | 0.657 |
| 75 | 75 | 0.845 |
| 76 | 76 | 0.00585 |
| 77 | 77 | 0.362 |
| 78 | 78 | 0.208 |
| 79 | 79 | 0.438 |
| 8 | 8 | 0.713 |
| 80 | 80 | 0.954 |
| 81 | 81 | 0.44 |
| 82 | 82 | 0.4 |
| 83 | 83 | 0.0247 |
| 84 | 84 | 0.289 |
| 85 | 85 | 0.481 |
| 86 | 86 | 0.502 |
| 87 | 87 | 0.265 |
| 88 | 88 | 0.514 |
| 89 | 89 | 0.512 |
| 9 | 9 | 0.929 |
| 90 | 90 | 0.393 |
| 91 | 91 | 0.12 |
| 92 | 92 | 0.531 |
| 93 | 93 | 0.631 |
| 94 | 94 | 0.355 |
| 95 | 95 | 0.00491 |
| 96 | 96 | 0.881 |
| 97 | 97 | 0.371 |
| 98 | 98 | 0.0867 |
| 99 | 99 | 0.113 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12733
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000158 human retinal pigment epithelial cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000147 (pigment cell)
0000255 (eukaryotic cell)
0000149 (visual pigment cell)
0002586 (retinal pigment epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000966 (retina)
0000970 (eye)
0000019 (camera-type eye)
0000483 (epithelium)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004923 (organ component layer)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0005388 (photoreceptor array)
0000020 (sense organ)
0010371 (ecto-epithelium)
0007625 (pigment epithelium of eye)
0001781 (layer of retina)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0001782 (pigmented layer of retina)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002104 (visual system)
0001802 (posterior segment of eyeball)
0004456 (entire sense organ system)
0001456 (face)
0010230 (eyeball of camera-type eye)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000158 (human retinal pigment epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
