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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005728
|accession_numbers=CAGE;DRX008549;DRR009421;DRZ000846;DRZ002231;DRZ012196;DRZ013581
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002092,CL:0002540
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002092,CL:0002540
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!1.54!37.99!PRRX1;;chr2:45236540..45236577,-!p1@SIX2!1.45!26.92!SIX2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.45!26.92!HOXC5;;chr12:54378923..54378966,+!p1@HOXC10!1.35!21.13!HOXC10;;chr6:45296048..45296082,+!p1@RUNX2!1.33!23.40!RUNX2;;chr4:174451370..174451387,-!p1@HAND2!1.31!19.62!HAND2;;chr10:131762504..131762555,-!p1@EBF3!1.31!19.37!EBF3;;chr7:19157248..19157268,-!p1@TWIST1!1.27!48.05!TWIST1;;chr1:170633348..170633399,+!p2@PRRX1!1.22!21.38!PRRX1;;chr8:22550982..22550999,-!p1@EGR3!1.19!41.01!EGR3;;chr1:170633262..170633285,+!p3@PRRX1!1.18!16.10!PRRX1;;chr7:44143925..44143970,+!p1@AEBP1!1.15!291.06!AEBP1;;chr15:42749722..42749739,-!p2@ZFP106!1.14!23.14!ZFP106;;chr5:158526917..158526932,-!p1@EBF1!1.13!30.94!EBF1;;chr6:85474299..85474324,-!p1@TBX18!1.12!21.63!TBX18;;chr8:25902876..25902936,-!p1@EBF2!1.12!12.33!EBF2;;chr12:54380036..54380091,+!p4@HOXC10!1.12!12.08!HOXC10;;chr7:44143978..44143989,+!p2@AEBP1!1.11!21.63!AEBP1;;chr6:1610293..1610310,+!p1@FOXC1!1.11!19.87!FOXC1;;chr2:19558373..19558392,-!p1@OSR1!1.10!31.95!OSR1;;chr4:174450089..174450153,-!p2@HAND2!1.10!11.57!HAND2;;chr20:50179368..50179392,-!p2@NFATC2!1.09!14.84!NFATC2;;chr19:45971246..45971265,+!p1@FOSB!1.08!203.77!FOSB;;chr1:170632959..170632987,+!p4@PRRX1!1.07!11.82!PRRX1;;chr14:24837368..24837401,+!p1@NFATC4!1.06!24.65!NFATC4;;chr19:13134772..13134822,+!p2@NFIX!1.05!15.09!NFIX;;chr21:36260773..36260804,-!p7@RUNX1!1.05!13.84!RUNX1;;chr7:44143997..44144008,+!p3@AEBP1!1.05!13.08!AEBP1;;chr16:54320617..54320643,-!p3@IRX3!1.05!13.08!IRX3;;chrY:21906594..21906622,-!p1@KDM5D!1.04!10.06!KDM5D;;chr1:170632477..170632506,+!p6@PRRX1!1.01!9.31!PRRX1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.01!9.31!HOXC5;;chr3:21792682..21792720,-!p1@ZNF385D!1.01!9.31!ZNF385D;;chr1:44513995..44514031,+!p1@KLF17!1.00!9.06!KLF17;;chr11:46299199..46299233,+!p1@CREB3L1!0.99!46.79!CREB3L1;;chr1:158979872..158979898,+!p3@IFI16!0.98!27.17!IFI16;;chr12:66218255..66218304,+!p3@HMGA2!0.98!23.40!HMGA2;;chr16:54320646..54320672,-!p2@IRX3!0.98!13.33!IRX3;;chr12:66218598..66218645,+!p2@HMGA2!0.97!39.75!HMGA2;;chr1:170632250..170632277,+!p7@PRRX1!0.94!7.80!PRRX1;;chr16:79634624..79634642,-!p1@MAF!0.92!29.69!MAF;;chr2:45236579..45236596,-!p2@SIX2!0.92!7.30!SIX2;;chr7:15726296..15726315,-!p1@MEOX2!0.92!7.30!MEOX2;;chr7:19157043..19157088,-!p2@TWIST1!0.90!18.11!TWIST1;;chr6:1312325..1312340,+!p1@FOXQ1!0.90!11.57!FOXQ1;;chr7:27224842..27224872,-!p1@HOXA11!0.89!6.79!HOXA11;;chr12:54380404..54380433,+!p3@HOXC10!0.88!6.54!HOXC10;;chr9:132427972..132428056,+!p1@PRRX2!0.86!8.30!PRRX2;;chr7:27213893..27213954,-!p1@HOXA10!0.86!6.29!HOXA10;;chr16:54320675..54320715,-!p1@IRX3!0.85!13.84!IRX3;;chr10:64576105..64576133,-!p1@EGR2!0.85!13.08!EGR2;;chr20:51588873..51588953,+!p1@TSHZ2!0.84!8.05!TSHZ2;;chr1:203055129..203055147,-!p1@MYOG!0.83!5.79!MYOG;;chr16:54320322..54320343,-!p7@IRX3!0.83!5.79!IRX3;;chr14:61116183..61116208,-!p1@SIX1!0.81!22.14!SIX1;;chr6:126240442..126240459,+!p4@NCOA7!0.81!7.04!NCOA7;;chr14:62162258..62162269,+!p2@HIF1A!0.80!55.85!HIF1A;;chr14:62162285..62162296,+!p3@HIF1A!0.80!29.94!HIF1A;;chr5:137804484..137804498,+!p2@EGR1!0.80!23.14!EGR1;;chr11:46299539..46299620,+!p2@CREB3L1!0.80!9.31!CREB3L1;;chr12:54410948..54410992,+!p3@HOXC5!0.80!5.28!HOXC5;;chr7:27205106..27205134,-!p2@HOXA9!0.80!5.28!HOXA9;;chr1:158979792..158979814,+!p2@IFI16!0.78!52.58!IFI16;;chr16:54964740..54964789,+!p1@IRX5!0.78!7.55!IRX5;;chr7:96654133..96654150,-!p1@DLX5!0.78!5.03!DLX5;;chr12:54393880..54393962,+!p1@HOXC9!0.78!5.03!HOXC9;;chr3:189349162..189349207,+!p2@TP63!0.78!5.03!TP63;;chr16:54320101..54320125,-!p4@IRX3!0.77!7.30!IRX3;;chr1:158969752..158969780,+!p6@IFI16!0.76!8.80!IFI16;;chr3:157824001..157824078,-!p2@SHOX2!0.76!4.78!SHOX2;;chr7:27224795..27224840,-!p2@HOXA11!0.76!4.78!HOXA11;;chr12:54379029..54379057,+!p2@HOXC10!0.76!4.78!HOXC10;;chr11:65686732..65686756,+!p2@DRAP1!0.74!21.13!DRAP1;;chr7:96654026..96654061,-!p2@DLX5!0.74!4.53!DLX5;;chr7:15726243..15726293,-!p2@MEOX2!0.72!4.28!MEOX2;;chr8:77593750..77593757,+!p3@ZFHX4!0.72!4.28!ZFHX4;;chr14:75745523..75745537,+!p1@FOS!0.71!569.05!FOS;;chr10:63809106..63809127,+!p1@ARID5B!0.71!62.89!ARID5B;;chr9:16870710..16870763,-!p1@BNC2!0.71!7.55!BNC2;;chr9:132427883..132427951,+!p2@PRRX2!0.70!4.03!PRRX2;;chr16:54319010..54319041,-!p8@IRX3!0.70!4.03!IRX3;;chr7:14029283..14029311,-!p1@ETV1!0.69!23.65!ETV1;;chr3:114343768..114343822,-!p1@ZBTB20!0.69!19.37!ZBTB20;;chr21:36421535..36421610,-!p2@RUNX1!0.69!15.60!RUNX1;;chr2:145277882..145277967,-!p3@ZEB2!0.69!7.30!ZEB2;;chr1:158985493..158985535,+!p4@IFI16!0.69!6.29!IFI16;;chr12:66218212..66218244,+!p5@HMGA2!0.68!5.79!HMGA2;;chr9:16870659..16870675,-!p2@BNC2!0.68!4.78!BNC2;;chr9:77112244..77112262,+!p1@RORB!0.68!4.28!RORB;;chrY:2803415..2803468,+!p1@ZFY!0.68!3.77!ZFY;;chr1:170632723..170632739,+!p8@PRRX1!0.68!3.77!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.68!3.77!PRRX1;;chr7:27205136..27205164,-!p1@HOXA9!0.68!3.77!HOXA9;;chr14:95236440..95236465,-!p1@GSC!0.68!3.77!GSC;;chr3:157823517..157823562,-!p1@SHOX2!0.67!4.03!SHOX2;;chr3:21792585..21792625,-!p2@ZNF385D!0.66!4.03!ZNF385D;;chr3:141087454..141087465,+!p19@ZBTB38!0.66!3.52!ZBTB38;;chr6:1612300..1612324,+!p3@FOXC1!0.66!3.52!FOXC1;;chr7:27192185..27192209,-!p1@HOXA3!0.66!3.52!HOXA3;;chr12:54380112..54380126,+!p5@HOXC10!0.66!3.52!HOXC10;;chr1:59249688..59249703,-!p3@JUN!0.65!24.15!JUN;;chr8:99956662..99956684,+!p1@OSR2!0.65!5.79!OSR2;;chr18:22932080..22932170,-!p1@ZNF521!0.64!16.60!ZNF521;;chr16:79633894..79633954,-!p3@MAF!0.64!7.04!MAF;;chr2:200322654..200322707,-!p2@SATB2!0.64!5.28!SATB2;;chr6:85473156..85473210,-!p2@TBX18!0.64!4.28!TBX18;;chr5:158527139..158527161,-!p5@EBF1!0.63!3.27!EBF1;;chr3:21792631..21792665,-!p3@ZNF385D!0.63!3.27!ZNF385D;;chr12:54402745..54402788,+!p1@HOXC8!0.63!3.27!HOXC8;;chr19:13135386..13135435,+!p4@NFIX!0.63!3.27!NFIX;;chr8:49833978..49833996,-!p1@SNAI2!0.62!77.99!SNAI2;;chr11:65687158..65687216,+!p4@DRAP1!0.62!21.13!DRAP1;;chr11:65686802..65686818,+!p6@DRAP1!0.62!6.04!DRAP1;;chr6:1612248..1612281,+!p2@FOXC1!0.62!3.52!FOXC1;;chr2:208394817..208394834,+!p3@CREB1!0.61!14.34!CREB1;;chr7:113726357..113726443,+!p1@FOXP2!0.61!5.79!FOXP2;;chr5:158526459..158526481,-!p2@EBF1!0.61!4.28!EBF1;;chr6:126240463..126240489,+!p6@NCOA7!0.61!3.52!NCOA7;;chr20:39317868..39317884,-!p1@MAFB!0.60!42.77!MAFB;;chr9:4300050..4300118,-!p1@GLIS3!0.60!23.14!GLIS3;;chr14:62213827..62213853,+!p6@HIF1A!0.60!4.53!HIF1A;;chr11:46299443..46299459,+!p4@CREB3L1!0.60!3.02!CREB3L1;;chr12:54394309..54394336,+!p2@HOXC9!0.60!3.02!HOXC9;;chr1:170632137..170632172,+!p10@PRRX1!0.60!3.02!PRRX1;;chr1:170632310..170632321,+!p15@PRRX1!0.60!3.02!PRRX1;;chr4:174451350..174451363,-!p3@HAND2!0.60!3.02!HAND2;;chr16:54320280..54320291,-!p9@IRX3!0.60!3.02!IRX3;;chr8:93074803..93074845,-!p1@RUNX1T1!0.60!3.02!RUNX1T1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.60!3.02!RUNX1T1;;chr5:72744594..72744609,-!p1@FOXD1!0.59!15.60!FOXD1;;chr2:239756671..239756732,+!p1@TWIST2!0.58!10.57!TWIST2;;chr7:27195867..27195893,-!p3@HOXA7!0.58!2.77!HOXA7;;chr7:27196267..27196311,-!p1@HOXA7!0.58!2.77!HOXA7;;chr10:119303078..119303169,+!p2@EMX2!0.58!2.77!EMX2;;chr1:170632439..170632465,+!p11@PRRX1!0.58!2.77!PRRX1;;chr1:170632647..170632659,+!p17@PRRX1!0.58!2.77!PRRX1;;chr16:54320302..54320317,-!p10@IRX3!0.58!2.77!IRX3;;chr5:137801160..137801176,+!p1@EGR1!0.56!331.82!EGR1;;chr8:49833948..49833973,-!p2@SNAI2!0.56!20.63!SNAI2;;chr10:63809134..63809145,+!p6@ARID5B!0.56!7.04!ARID5B;;chr12:66218183..66218209,+!p4@HMGA2!0.56!5.79!HMGA2;;chr3:178789522..178789564,-!p2@ZMAT3!0.55!23.40!ZMAT3;;chr12:53614115..53614154,-!p1@RARG!0.55!16.60!RARG;;chr11:65687362..65687436,+!p3@DRAP1!0.55!14.34!DRAP1;;chr8:77593474..77593612,+!p1@ZFHX4!0.55!13.08!ZFHX4;;chr19:44037546..44037594,+!p1@ZNF575!0.55!6.04!ZNF575;;chr16:79634595..79634620,-!p2@MAF!0.55!5.28!MAF;;chr19:42788636..42788660,+!p1@CIC!0.55!4.78!CIC;;chr5:72744445..72744466,-!p2@FOXD1!0.55!4.78!FOXD1;;chr16:54320158..54320200,-!p5@IRX3!0.55!4.03!IRX3;;chr4:26322673..26322684,+!p11@RBPJ!0.55!2.52!RBPJ;;chrY:21906761..21906810,-!p2@KDM5D!0.55!2.52!KDM5D;;chr2:27357446..27357475,-!p2@PREB!0.54!10.31!PREB;;chr4:26322267..26322334,+!p3@RBPJ!0.54!7.04!RBPJ;;chr13:41635029..41635044,-!p4@ELF1!0.54!6.04!ELF1;;chr14:62203595..62203676,+!p4@HIF1A!0.54!5.28!HIF1A;;chr7:14028488..14028516,-!p2@ETV1!0.54!2.77!ETV1;;chr14:62162224..62162254,+!p1@HIF1A!0.53!450.31!HIF1A;;chr8:116681409..116681431,-!p2@TRPS1!0.53!7.80!TRPS1;;chr5:134369905..134369972,-!p1@PITX1!0.53!4.03!PITX1;;chr12:56753869..56753930,-!p1@STAT2!0.52!132.32!STAT2;;chr12:96588143..96588185,+!p1@ELK3!0.52!36.23!ELK3;;chr7:17338266..17338282,+!p1@AHR!0.52!32.20!AHR;;chr5:321810..321877,+!p1@AHRR!0.52!9.06!AHRR;;chr3:12329397..12329433,+!p2@PPARG!0.52!6.29!PPARG;;chr12:66218573..66218596,+!p7@HMGA2!0.52!3.77!HMGA2;;chr7:28448995..28449011,+!p4@CREB5!0.52!3.52!CREB5;;chr16:4365715..4365746,+!p@chr16:4365715..4365746,+!0.52!3.27!GLIS2;;chr8:72756637..72756664,-!p3@MSC!0.52!2.77!MSC;;chr2:145277640..145277771,-!p1@ZEB2!0.51!39.50!ZEB2;;chr10:63809013..63809041,+!p3@ARID5B!0.51!15.85!ARID5B;;chr17:59477233..59477263,+!p1@TBX2!0.51!8.55!TBX2;;chr13:74708029..74708077,-!p2@KLF12!0.51!7.80!KLF12;;chr1:200379104..200379128,-!p2@ZNF281!0.51!6.54!ZNF281;;chr16:31076332..31076388,-!p3@ZNF668!0.51!2.26!ZNF668;;chr2:102091566..102091581,-!p1@RFX8!0.51!2.26!RFX8;;chr2:176994408..176994492,+!p1@HOXD8!0.51!2.26!HOXD8;;chr2:19558327..19558334,-!p2@OSR1!0.51!2.26!OSR1;;chr3:141121871..141121885,+!p13@ZBTB38!0.51!2.26!ZBTB38;;chr3:21792790..21792824,-!p4@ZNF385D!0.51!2.26!ZNF385D;;chr7:15725757..15725828,-!p5@MEOX2!0.51!2.26!MEOX2;;chr7:27196217..27196246,-!p2@HOXA7!0.51!2.26!HOXA7;;chr8:116673894..116673913,-!p12@TRPS1!0.51!2.26!TRPS1;;chr12:66218904..66218913,+!p11@HMGA2!0.51!2.26!HMGA2;;chr14:62214151..62214164,+!p11@HIF1A!0.51!2.26!HIF1A;;chr9:16705069..16705086,-!p3@BNC2!0.51!2.26!BNC2;;chr2:191878874..191878938,-!p1@STAT1!0.50!157.23!STAT1;;ch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0.18!0.50!ZC3H13;;chr14:21994525..21994547,-!p4@SALL2!0.18!0.50!SALL2;;chr14:45722673..45722691,-!p8@MIS18BP1!0.18!0.50!MIS18BP1;;chr14:74254460..74254476,-!p33@C14orf43!0.18!0.50!C14orf43;;chr9:96717678..96717689,-!p2@BARX1!0.18!0.50!BARX1;;chr9:16728161..16728185,-!p4@BNC2!0.18!0.50!BNC2;;chr9:16727949..16727965,-!p14@BNC2!0.18!0.50!BNC2;;chr9:73029044..73029056,-!p10@KLF9!0.18!0.50!KLF9;;chr9:4299874..4299887,-!p9@GLIS3!0.18!0.50!GLIS3;;chr9:14314946..14314983,-!p8@NFIB!0.18!0.50!NFIB;;chrX:30327504..30327509,-!p1@NR0B1!0.18!0.50!NR0B1;;chr9:33295026..33295035,+!p2@NFX1!0.18!0.50!NFX1;;chr19:44100672..44100683,+!p3@ZNF576!0.18!0.50!ZNF576;;chr19:44860847..44860861,-!p4@ZFP112,p4@ZNF285!0.18!0.50!ZFP112;;chr19:47523058..47523114,+!p1@NPAS1!0.18!0.50!NPAS1;;chr19:53290078..53290089,-!p3@ZNF600!0.18!0.50!ZNF600;;chr19:53758167..53758190,-!p3@ZNF677!0.18!0.50!ZNF677;;chr19:54058073..54058088,+!p1@ZNF331!0.18!0.50!ZNF331;;chr1:119530682..119530692,-!p10@TBX15!0.18!0.50!TBX15;;chr1:119532127..119532138,-!p5@TBX15!0.18!0.50!TBX15;;chr1:151030388..151030419,+!p9@MLLT11!0.18!0.50!MLLT11;;chr1:158979922..158979933,+!p13@IFI16!0.18!0.50!IFI16;;chr1:161014760..161014788,-!p4@USF1!0.18!0.50!USF1;;chr1:170632108..170632114,+!p29@PRRX1!0.18!0.50!PRRX1;;chr1:212873084..212873137,-!p2@BATF3!0.18!0.50!BATF3;;chr1:244219392..244219409,+!p5@ZNF238!0.18!0.50!ZNF238;;chr1:40105299..40105326,-!p1@HEYL!0.18!0.50!HEYL;;chr1:61547405..61547434,+!p11@NFIA!0.18!0.50!NFIA;;chr20:46130827..46130838,+!p8@NCOA3!0.18!0.50!NCOA3;;chr20:51589732..51589769,+!p3@TSHZ2!0.18!0.50!TSHZ2;;chr21:30672433..30672464,+!p6@BACH1!0.18!0.50!BACH1;;chr21:36260325..36260341,-!p14@RUNX1!0.18!0.50!RUNX1;;chr21:36421347..36421380,-!p8@RUNX1!0.18!0.50!RUNX1;;chr21:38071430..38071456,+!p1@SIM2!0.18!0.50!SIM2;;chr5:124082525..124082536,-!p10@ZNF608!0.18!0.50!ZNF608;;chr5:133450458..133450469,+!p4@TCF7!0.18!0.50!TCF7;;chr5:134369222..134369237,-!p8@PITX1!0.18!0.50!PITX1;;chr5:134369848..134369853,-!p6@PITX1!0.18!0.50!PITX1;;chr5:134369973..134369984,-!p3@PITX1!0.18!0.50!PITX1;;chr5:158524563..158524578,-!p11@EBF1!0.18!0.50!EBF1;;chr5:158526862..158526869,-!p14@EBF1!0.18!0.50!EBF1;;chr5:158527253..158527264,-!p10@EBF1!0.18!0.50!EBF1;;chr5:174151612..174151633,+!p2@MSX2!0.18!0.50!MSX2;;chr5:2751785..2751808,-!p2@IRX2!0.18!0.50!IRX2;;chr6:155635647..155635658,-!p2@TFB1M!0.18!0.50!TFB1M;;chr6:1612284..1612295,+!p10@FOXC1!0.18!0.50!FOXC1;;chr6:36355431..36355466,-!p1@ETV7!0.18!0.50!ETV7;;chr7:100076673..100076682,-!p7@TSC22D4!0.18!0.50!TSC22D4;;chr7:14029034..14029087,-!p5@ETV1!0.18!0.50!ETV1;;chr7:149158187..149158210,-!p2@ZNF777!0.18!0.50!ZNF777;;chr7:150945740..150945750,-!p7@SMARCD3!0.18!0.50!SMARCD3;;chr7:15725736..15725751,-!p9@MEOX2!0.18!0.50!MEOX2;;chr7:15725992..15726043,-!p7@MEOX2!0.18!0.50!MEOX2;;chr7:27196196..27196210,-!p5@HOXA7!0.18!0.50!HOXA7;;chr7:27205175..27205184,-!p3@HOXA9!0.18!0.50!HOXA9;;chr7:27934878..27934909,-!p4@JAZF1!0.18!0.50!JAZF1;;chr7:28452130..28452154,+!p10@CREB5!0.18!0.50!CREB5;;chr7:64342863..64342905,+!p3@ZNF273!0.18!0.50!ZNF273;;chr7:96635178..96635181,+!p1@DLX6!0.18!0.50!DLX6;;chr7:96635448..96635470,+!p5@DLX6!0.18!0.50!DLX6;;chr8:25902668..25902680,-!p3@EBF2!0.18!0.50!EBF2;;chr8:72756251..72756262,-!p12@MSC!0.18!0.50!MSC;;chr8:77593448..77593471,+!p2@ZFHX4!0.18!0.50!ZFHX4;;chr8:93074872..93074884,-!p10@RUNX1T1!0.18!0.50!RUNX1T1;;
|expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!1.54!37.99!PRRX1;;chr2:45236540..45236577,-!p1@SIX2!1.45!26.92!SIX2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.45!26.92!HOXC5;;chr12:54378923..54378966,+!p1@HOXC10!1.35!21.13!HOXC10;;chr6:45296048..45296082,+!p1@RUNX2!1.33!23.40!RUNX2;;chr4:174451370..174451387,-!p1@HAND2!1.31!19.62!HAND2;;chr10:131762504..131762555,-!p1@EBF3!1.31!19.37!EBF3;;chr7:19157248..19157268,-!p1@TWIST1!1.27!48.05!TWIST1;;chr1:170633348..170633399,+!p2@PRRX1!1.22!21.38!PRRX1;;chr8:22550982..22550999,-!p1@EGR3!1.19!41.01!EGR3;;chr1:170633262..170633285,+!p3@PRRX1!1.18!16.10!PRRX1;;chr7:44143925..44143970,+!p1@AEBP1!1.15!291.06!AEBP1;;chr15:42749722..42749739,-!p2@ZFP106!1.14!23.14!ZFP106;;chr5:158526917..158526932,-!p1@EBF1!1.13!30.94!EBF1;;chr6:85474299..85474324,-!p1@TBX18!1.12!21.63!TBX18;;chr8:25902876..25902936,-!p1@EBF2!1.12!12.33!EBF2;;chr12:54380036..54380091,+!p4@HOXC10!1.12!12.08!HOXC10;;chr7:44143978..44143989,+!p2@AEBP1!1.11!21.63!AEBP1;;chr6:1610293..1610310,+!p1@FOXC1!1.11!19.87!FOXC1;;chr2:19558373..19558392,-!p1@OSR1!1.10!31.95!OSR1;;chr4:174450089..174450153,-!p2@HAND2!1.10!11.57!HAND2;;chr20:50179368..50179392,-!p2@NFATC2!1.09!14.84!NFATC2;;chr19:45971246..45971265,+!p1@FOSB!1.08!203.77!FOSB;;chr1:170632959..170632987,+!p4@PRRX1!1.07!11.82!PRRX1;;chr14:24837368..24837401,+!p1@NFATC4!1.06!24.65!NFATC4;;chr19:13134772..13134822,+!p2@NFIX!1.05!15.09!NFIX;;chr21:36260773..36260804,-!p7@RUNX1!1.05!13.84!RUNX1;;chr7:44143997..44144008,+!p3@AEBP1!1.05!13.08!AEBP1;;chr16:54320617..54320643,-!p3@IRX3!1.05!13.08!IRX3;;chrY:21906594..21906622,-!p1@KDM5D!1.04!10.06!KDM5D;;chr1:170632477..170632506,+!p6@PRRX1!1.01!9.31!PRRX1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.01!9.31!HOXC5;;chr3:21792682..21792720,-!p1@ZNF385D!1.01!9.31!ZNF385D;;chr1:44513995..44514031,+!p1@KLF17!1.00!9.06!KLF17;;chr11:46299199..46299233,+!p1@CREB3L1!0.99!46.79!CREB3L1;;chr1:158979872..158979898,+!p3@IFI16!0.98!27.17!IFI16;;chr12:66218255..66218304,+!p3@HMGA2!0.98!23.40!HMGA2;;chr16:54320646..54320672,-!p2@IRX3!0.98!13.33!IRX3;;chr12:66218598..66218645,+!p2@HMGA2!0.97!39.75!HMGA2;;chr1:170632250..170632277,+!p7@PRRX1!0.94!7.80!PRRX1;;chr16:79634624..79634642,-!p1@MAF!0.92!29.69!MAF;;chr2:45236579..45236596,-!p2@SIX2!0.92!7.30!SIX2;;chr7:15726296..15726315,-!p1@MEOX2!0.92!7.30!MEOX2;;chr7:19157043..19157088,-!p2@TWIST1!0.90!18.11!TWIST1;;chr6:1312325..1312340,+!p1@FOXQ1!0.90!11.57!FOXQ1;;chr7:27224842..27224872,-!p1@HOXA11!0.89!6.79!HOXA11;;chr12:54380404..54380433,+!p3@HOXC10!0.88!6.54!HOXC10;;chr9:132427972..132428056,+!p1@PRRX2!0.86!8.30!PRRX2;;chr7:27213893..27213954,-!p1@HOXA10!0.86!6.29!HOXA10;;chr16:54320675..54320715,-!p1@IRX3!0.85!13.84!IRX3;;chr10:64576105..64576133,-!p1@EGR2!0.85!13.08!EGR2;;chr20:51588873..51588953,+!p1@TSHZ2!0.84!8.05!TSHZ2;;chr1:203055129..203055147,-!p1@MYOG!0.83!5.79!MYOG;;chr16:54320322..54320343,-!p7@IRX3!0.83!5.79!IRX3;;chr14:61116183..61116208,-!p1@SIX1!0.81!22.14!SIX1;;chr6:126240442..126240459,+!p4@NCOA7!0.81!7.04!NCOA7;;chr14:62162258..62162269,+!p2@HIF1A!0.80!55.85!HIF1A;;chr14:62162285..62162296,+!p3@HIF1A!0.80!29.94!HIF1A;;chr5:137804484..137804498,+!p2@EGR1!0.80!23.14!EGR1;;chr11:46299539..46299620,+!p2@CREB3L1!0.80!9.31!CREB3L1;;chr12:54410948..54410992,+!p3@HOXC5!0.80!5.28!HOXC5;;chr7:27205106..27205134,-!p2@HOXA9!0.80!5.28!HOXA9;;chr1:158979792..158979814,+!p2@IFI16!0.78!52.58!IFI16;;chr16:54964740..54964789,+!p1@IRX5!0.78!7.55!IRX5;;chr7:96654133..96654150,-!p1@DLX5!0.78!5.03!DLX5;;chr12:54393880..54393962,+!p1@HOXC9!0.78!5.03!HOXC9;;chr3:189349162..189349207,+!p2@TP63!0.78!5.03!TP63;;chr16:54320101..54320125,-!p4@IRX3!0.77!7.30!IRX3;;chr1:158969752..158969780,+!p6@IFI16!0.76!8.80!IFI16;;chr3:157824001..157824078,-!p2@SHOX2!0.76!4.78!SHOX2;;chr7:27224795..27224840,-!p2@HOXA11!0.76!4.78!HOXA11;;chr12:54379029..54379057,+!p2@HOXC10!0.76!4.78!HOXC10;;chr11:65686732..65686756,+!p2@DRAP1!0.74!21.13!DRAP1;;chr7:96654026..96654061,-!p2@DLX5!0.74!4.53!DLX5;;chr7:15726243..15726293,-!p2@MEOX2!0.72!4.28!MEOX2;;chr8:77593750..77593757,+!p3@ZFHX4!0.72!4.28!ZFHX4;;chr14:75745523..75745537,+!p1@FOS!0.71!569.05!FOS;;chr10:63809106..63809127,+!p1@ARID5B!0.71!62.89!ARID5B;;chr9:16870710..16870763,-!p1@BNC2!0.71!7.55!BNC2;;chr9:132427883..132427951,+!p2@PRRX2!0.70!4.03!PRRX2;;chr16:54319010..54319041,-!p8@IRX3!0.70!4.03!IRX3;;chr7:14029283..14029311,-!p1@ETV1!0.69!23.65!ETV1;;chr3:114343768..114343822,-!p1@ZBTB20!0.69!19.37!ZBTB20;;chr21:36421535..36421610,-!p2@RUNX1!0.69!15.60!RUNX1;;chr2:145277882..145277967,-!p3@ZEB2!0.69!7.30!ZEB2;;chr1:158985493..158985535,+!p4@IFI16!0.69!6.29!IFI16;;chr12:66218212..66218244,+!p5@HMGA2!0.68!5.79!HMGA2;;chr9:16870659..16870675,-!p2@BNC2!0.68!4.78!BNC2;;chr9:77112244..77112262,+!p1@RORB!0.68!4.28!RORB;;chrY:2803415..2803468,+!p1@ZFY!0.68!3.77!ZFY;;chr1:170632723..170632739,+!p8@PRRX1!0.68!3.77!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.68!3.77!PRRX1;;chr7:27205136..27205164,-!p1@HOXA9!0.68!3.77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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002092;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002540;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 37: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520bone%2520marrow%252c%2520donor2.CNhs12367.11751-123G5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520bone%2520marrow%252c%2520donor2.CNhs12367.11751-123G5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520bone%2520marrow%252c%2520donor2.CNhs12367.11751-123G5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520bone%2520marrow%252c%2520donor2.CNhs12367.11751-123G5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520bone%2520marrow%252c%2520donor2.CNhs12367.11751-123G5.hg38.nobarcode.ctss.bed.gz
|id=FF:11751-123G5
|id=FF:11751-123G5
|is_a=EFO:0002091;;FF:0000269
|is_a=EFO:0002091;;FF:0000269
|is_obsolete=
|is_obsolete=
|library_id=CNhs12367
|library_id_phase_based=2:CNhs12367
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11751
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11751
|name=mesenchymal precursor cell - bone marrow, donor2
|name=mesenchymal precursor cell - bone marrow, donor2
|namespace=FANTOM5
|namespace=FANTOM5
Line 45: Line 61:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12367,LSID914,release011,COMPLETED
|profile_hcage=CNhs12367,LSID914,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,-0.0876549266525155,0.0681682072851005,0,0.0974544165143517,0,0,0,0,0,0,0,0,0,0,0,0.360441924091779,0,0,0,0,0,0.343104627070336,0,0,0.0440416296959771,0,0,0,0,0,0,0,0,0,0,0.399571176171076,0,0.102613079376701,0.0974544165143517,0.176998219474839,0,0,0,0,0,0,0.097886875460397,0,0,0,0,0,0,0,0.205397365767308,0,0,0.0796545922617424,0.0974544165143517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0487272082571759,0,0.090857229685628,0,0,0,-0.0396706779215379,0.321887484658769,0,0,-0.0314923537822552,-0.0890955061226375,0,0.353693068263957,0.0487272082571759,0.176998219474839,-0.000580934723354756,0.0614448709612373,0,0,0,0,0,0,0.0974544165143517,0,0,0,0,0,0,0,0,0,0,0.0010808225918907,0,0,0,0.0609589138561027,0.0627359528702975,0,0,0.0974544165143517,0,0,0
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|rna_box=123
|rna_box=123
|rna_catalog_number=
|rna_catalog_number=
Line 60: Line 79:
|rna_weight_ug=40.287
|rna_weight_ug=40.287
|sample_age=
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_line=

Revision as of 21:07, 10 August 2017

Name:mesenchymal precursor cell - bone marrow, donor2
Species:Human (Homo sapiens)
Library ID:CNhs12367
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissuebone marrow
dev stageNA
sexNA
ageNA
cell typemesenchymal precursor cell
cell lineNA
companyNA
collaborationClaudio Schneider LNCIB
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005728
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12367 CAGE DRX008549 DRR009421
Accession ID Hg19

Library idBAMCTSS
CNhs12367 DRZ000846 DRZ002231
Accession ID Hg38

Library idBAMCTSS
CNhs12367 DRZ012196 DRZ013581
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0801
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.261
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.244
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.11
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0983
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.0975
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.679
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0347
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.164
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.177
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.532
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0585
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.302
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0887
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.435
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular1.152
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.124
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.177
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.4
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.496
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.441
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.0975
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.514
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0975
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal1.024
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12367

Jaspar motifP-value
MA0002.20.774
MA0003.10.54
MA0004.10.645
MA0006.10.986
MA0007.10.703
MA0009.10.13
MA0014.10.955
MA0017.10.58
MA0018.20.0048
MA0019.10.308
MA0024.18.95678e-5
MA0025.15.01303e-4
MA0027.10.779
MA0028.10.582
MA0029.10.18
MA0030.10.0621
MA0031.10.271
MA0035.20.00299
MA0038.10.0922
MA0039.20.00425
MA0040.10.653
MA0041.10.423
MA0042.10.205
MA0043.10.0415
MA0046.10.126
MA0047.20.932
MA0048.10.0986
MA0050.10.665
MA0051.10.383
MA0052.10.671
MA0055.10.644
MA0057.10.573
MA0058.10.262
MA0059.10.643
MA0060.12.0357e-8
MA0061.10.112
MA0062.21.35642e-4
MA0065.20.377
MA0066.10.57
MA0067.10.23
MA0068.10.62
MA0069.10.243
MA0070.10.546
MA0071.10.316
MA0072.10.732
MA0073.10.895
MA0074.10.115
MA0076.10.525
MA0077.10.0109
MA0078.10.515
MA0079.20.672
MA0080.29.9838e-10
MA0081.10.0264
MA0083.16.39047e-11
MA0084.10.573
MA0087.10.823
MA0088.10.682
MA0090.19.24686e-4
MA0091.10.125
MA0092.10.744
MA0093.10.44
MA0099.20.73
MA0100.10.318
MA0101.10.0122
MA0102.20.639
MA0103.14.77417e-4
MA0104.20.79
MA0105.10.91
MA0106.10.28
MA0107.10.00431
MA0108.20.103
MA0111.10.274
MA0112.20.0384
MA0113.10.661
MA0114.10.408
MA0115.10.0224
MA0116.10.884
MA0117.10.511
MA0119.10.394
MA0122.10.586
MA0124.10.985
MA0125.10.064
MA0131.10.429
MA0135.10.444
MA0136.13.27273e-9
MA0137.20.0322
MA0138.20.534
MA0139.10.536
MA0140.10.059
MA0141.10.806
MA0142.10.153
MA0143.10.186
MA0144.10.155
MA0145.10.479
MA0146.10.479
MA0147.10.48
MA0148.10.51
MA0149.10.941
MA0150.10.804
MA0152.11.88283e-4
MA0153.10.331
MA0154.10.797
MA0155.10.518
MA0156.15.02425e-7
MA0157.10.63
MA0159.10.719
MA0160.10.21
MA0162.10.385
MA0163.10.107
MA0164.10.824
MA0258.10.493
MA0259.10.554



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12367

Novel motifP-value
10.83
100.519
1000.819
1010.578
1020.00331
1030.352
1040.536
1050.278
1060.838
1070.878
1080.613
1090.829
110.96
1100.237
1110.658
1120.746
1130.00403
1140.277
1150.369
1160.275
1170.751
1180.412
1190.936
120.266
1200.881
1210.312
1220.0347
1232.31403e-5
1240.451
1250.961
1260.53
1270.722
1280.472
1290.726
130.702
1300.686
1310.624
1320.463
1330.889
1340.397
1350.776
1360.743
1370.56
1380.424
1390.737
140.62
1400.886
1410.101
1420.272
1430.872
1440.219
1450.762
1460.588
1470.0233
1480.933
1490.134
150.524
1500.868
1510.83
1520.536
1530.419
1540.68
1550.00563
1560.12
1570.36
1580.00555
1590.146
160.0537
1600.638
1610.615
1620.42
1630.865
1640.351
1650.655
1660.00564
1670.278
1680.406
1690.121
170.917
180.413
190.00399
20.972
200.852
210.563
220.322
230.492
240.126
250.189
260.622
270.732
280.492
290.219
30.697
300.337
310.632
324.0196e-13
330.713
340.391
350.67
360.0479
370.0216
380.237
390.216
40.0138
400.0303
410.188
420.341
430.758
440.519
450.991
460.633
470.0976
480.341
490.227
50.668
500.428
510.415
520.958
530.0304
540.635
550.0421
560.904
570.467
580.102
590.341
60.261
600.812
610.651
620.179
630.398
640.431
650.975
660.154
670.987
680.464
690.677
70.226
700.986
710.843
720.923
730.0762
740.128
750.919
760.458
770.0645
780.00275
790.003
80.697
800.379
810.923
820.747
830.894
840.805
850.908
860.229
870.698
880.234
890.0273
90.609
900.518
910.36
920.363
930.884
940.978
950.835
960.501
970.244
980.506
990.0359



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12367


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002092 (bone marrow cell)
0002540 (mesenchymal stem cell of the bone marrow)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002371 (bone marrow)
0001474 (bone element)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000269 (human mesenchymal precursor cell of bone marrow sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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