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Difference between revisions of "FF:11760-123H5"

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{{f5samples
 
{{f5samples
|id=FF:11760-123H5
+
|DRA_sample_Accession=CAGE@SAMD00005216
|name=mesenchymal precursor cell - ovarian cancer left ovary, donor3
+
|accession_numbers=CAGE;DRX008557;DRR009429;DRZ000854;DRZ002239;DRZ012204;DRZ013589
|sample_id=11760
+
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000992,UBERON:0000991,UBERON:0002384,UBERON:0003134,UBERON:0000479,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0002119,UBERON:0003100,UBERON:0000474
|rna_tube_id=123H5
+
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034
|rna_box=123
+
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:193,DOID:2394,DOID:120
|rna_position=H5
+
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000272,FF:0000273
|sample_cell_lot=SOC-57-01
+
|comment=
|sample_cell_catalog=
+
|created_by=
|sample_company=
+
|creation_date=
|rna_lot_number=
+
|data_phase=2
|rna_catalog_number=
+
|datafreeze_phase=2
|sample_species=Human (Homo sapiens)
+
|def=
|sample_strain=
+
|expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!1.76!56.05!PAX8;;chr8:55370487..55370503,+!p1@SOX17!1.49!29.66!SOX17;;chr20:50179368..50179392,-!p2@NFATC2!1.33!26.08!NFATC2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.32!19.72!ZBED1;;chr11:61520075..61520136,+!p1@C11orf9!1.31!40.99!C11orf9;;chr21:36260773..36260804,-!p7@RUNX1!1.30!25.62!RUNX1;;chr15:83953397..83953425,-!p1@BNC1!1.27!20.03!BNC1;;chr11:46299199..46299233,+!p1@CREB3L1!1.20!76.70!CREB3L1;;chr12:26277817..26277863,-!p2@BHLHE41!1.19!19.56!BHLHE41;;chr8:11561684..11561751,+!p1@GATA4!1.16!13.35!GATA4;;chr19:42636586..42636607,-!p1@POU2F2!1.13!34.47!POU2F2;;chr1:170632285..170632309,+!p1@PRRX1!1.13!14.28!PRRX1;;chr8:106330656..106330684,+!p1@ZFPM2!1.11!31.21!ZFPM2;;chr17:1959369..1959388,+!p2@HIC1!1.04!26.86!HIC1;;chr8:72756267..72756296,-!p4@MSC!1.04!14.59!MSC;;chr10:64576105..64576133,-!p1@EGR2!1.03!20.18!EGR2;;chr6:134210243..134210257,+!p1@TCF21!1.03!9.78!TCF21;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.01!9.32!HOXC5;;chr2:102091566..102091581,-!p1@RFX8!1.01!9.16!RFX8;;chr19:45971246..45971265,+!p1@FOSB!1.00!169.86!FOSB;;chr12:66218598..66218645,+!p2@HMGA2!1.00!42.08!HMGA2;;chr18:19749541..19749557,+!p1@GATA6!0.96!26.08!GATA6;;chr11:32457075..32457095,-!p1@WT1!0.96!8.07!WT1;;chr1:170632115..170632136,+!p9@PRRX1!0.95!7.92!PRRX1;;chr12:66218255..66218304,+!p3@HMGA2!0.94!21.58!HMGA2;;chr1:170632137..170632172,+!p10@PRRX1!0.94!7.76!PRRX1;;chr11:120107344..120107351,+!p1@POU2F3!0.92!8.85!POU2F3;;chr17:1958388..1958404,+!p1@HIC1!0.91!47.67!HIC1;;chr3:141087393..141087426,+!p3@ZBTB38!0.91!29.81!ZBTB38;;chr1:170633348..170633399,+!p2@PRRX1!0.90!9.63!PRRX1;;chr8:72756637..72756664,-!p3@MSC!0.90!7.92!MSC;;chr9:16705069..16705086,-!p3@BNC2!0.90!6.99!BNC2;;chr12:26277956..26277980,-!p1@BHLHE41!0.89!25.31!BHLHE41;;chr3:141087454..141087465,+!p19@ZBTB38!0.88!6.52!ZBTB38;;chr2:239756739..239756755,+!p2@TWIST2!0.87!11.18!TWIST2;;chr1:170633262..170633285,+!p3@PRRX1!0.86!7.14!PRRX1;;chr3:25470156..25470227,+!p2@RARB!0.86!6.21!RARB;;chr2:19558373..19558392,-!p1@OSR1!0.85!17.70!OSR1;;chr12:66218183..66218209,+!p4@HMGA2!0.85!12.11!HMGA2;;chr11:46299539..46299620,+!p2@CREB3L1!0.85!10.56!CREB3L1;;chr17:46622114..46622138,-!p4@HOXB2!0.85!9.63!HOXB2;;chr7:1577899..1577943,+!p3@MAFK!0.85!6.06!MAFK;;chr12:66218212..66218244,+!p5@HMGA2!0.84!8.85!HMGA2;;chr12:26277929..26277955,-!p3@BHLHE41!0.84!8.54!BHLHE41;;chr19:46801639..46801699,+!p1@HIF3A!0.83!5.74!HIF3A;;chr1:151032860..151032918,+!p1@MLLT11!0.82!71.89!MLLT11;;chr8:72756667..72756736,-!p2@MSC!0.81!8.85!MSC;;chr7:26191809..26191890,+!p1@NFE2L3!0.80!28.26!NFE2L3;;chr8:72756063..72756125,-!p1@MSC!0.80!11.33!MSC;;chr7:27183263..27183284,-!p2@HOXA5!0.80!5.28!HOXA5;;chr9:127269661..127269719,-!p1@NR5A1!0.80!5.28!NR5A1;;chr3:138665937..138665968,-!p1@FOXL2!0.79!5.12!FOXL2;;chr17:46132044..46132080,+!p4@NFE2L1!0.79!5.12!NFE2L1;;chr1:37940170..37940190,+!p1@ZC3H12A!0.78!67.38!ZC3H12A;;chr17:46622070..46622109,-!p1@HOXB2!0.78!11.96!HOXB2;;chr8:106330696..106330719,+!p2@ZFPM2!0.78!6.52!ZFPM2;;chr12:54394309..54394336,+!p2@HOXC9!0.78!4.97!HOXC9;;chr17:45928521..45928539,-!p1@SP6!0.78!4.97!SP6;;chr15:96869114..96869160,+!p11@NR2F2!0.77!6.83!NR2F2;;chr7:44143925..44143970,+!p1@AEBP1!0.76!116.29!AEBP1;;chr8:49833948..49833973,-!p2@SNAI2!0.76!32.92!SNAI2;;chr18:19749386..19749404,+!p2@GATA6!0.76!6.99!GATA6;;chr2:239756671..239756732,+!p1@TWIST2!0.75!15.99!TWIST2;;chr1:170632051..170632081,+!p16@PRRX1!0.74!4.50!PRRX1;;chr1:170632647..170632659,+!p17@PRRX1!0.74!4.50!PRRX1;;chr3:25469815..25469866,+!p3@RARB!0.73!4.35!RARB;;chr17:45928443..45928473,-!p2@SP6!0.73!4.35!SP6;;chr8:49833978..49833996,-!p1@SNAI2!0.72!98.75!SNAI2;;chr12:115121962..115121987,-!p1@TBX3!0.72!39.90!TBX3;;chr2:66662281..66662308,+!p1@MEIS1!0.72!16.30!MEIS1;;chr16:86544113..86544145,+!p1@FOXF1!0.72!5.43!FOXF1;;chr7:27183291..27183324,-!p1@HOXA5!0.72!4.19!HOXA5;;chr8:72756213..72756243,-!p5@MSC!0.71!5.59!MSC;;chr2:121493425..121493474,+!p1@GLI2!0.70!9.63!GLI2;;chr6:45296048..45296082,+!p1@RUNX2!0.70!4.66!RUNX2;;chr1:170632250..170632277,+!p7@PRRX1!0.70!4.04!PRRX1;;chr12:54402745..54402788,+!p1@HOXC8!0.70!4.04!HOXC8;;chr12:54447637..54447659,+!p4@HOXC4!0.70!4.04!HOXC4;;chr10:94449703..94449718,+!p1@HHEX!0.69!17.08!HHEX;;chr1:151032922..151032951,+!p2@MLLT11!0.69!6.99!MLLT11;;chr1:170632959..170632987,+!p4@PRRX1!0.69!4.35!PRRX1;;chr11:125034640..125034655,+!p1@PKNOX2!0.69!3.88!PKNOX2;;chr1:59249688..59249703,-!p3@JUN!0.68!25.62!JUN;;chr15:96874927..96874938,+!p8@NR2F2!0.68!8.85!NR2F2;;chr3:141121847..141121868,+!p5@ZBTB38!0.68!6.06!ZBTB38;;chr17:46622205..46622218,-!p3@HOXB2!0.68!4.50!HOXB2;;chr4:174450089..174450153,-!p2@HAND2!0.67!3.73!HAND2;;chr4:174451370..174451387,-!p1@HAND2!0.67!3.73!HAND2;;chr11:65686732..65686756,+!p2@DRAP1!0.66!17.39!DRAP1;;chr1:151032782..151032801,+!p4@MLLT11!0.66!7.92!MLLT11;;chr2:102091144..102091183,-!p2@RFX8!0.66!3.57!RFX8;;chr2:176994408..176994492,+!p1@HOXD8!0.66!3.57!HOXD8;;chr12:66218836..66218888,+!p1@HMGA2!0.65!38.19!HMGA2;;chr3:5021268..5021282,+!p4@BHLHE40!0.65!7.76!BHLHE40;;chr21:36260343..36260402,-!p6@RUNX1!0.65!6.06!RUNX1;;chr2:66662895..66662907,+!p3@MEIS1!0.64!4.35!MEIS1;;chr3:141105705..141105770,+!p4@ZBTB38!0.64!4.19!ZBTB38;;chr14:62162258..62162269,+!p2@HIF1A!0.63!36.95!HIF1A;;chr9:35732647..35732678,+!p2@CREB3!0.63!21.43!CREB3;;chr15:96869255..96869291,+!p6@NR2F2!0.63!6.52!NR2F2;;chr21:36260295..36260310,-!p3@RUNX1!0.63!5.74!RUNX1;;chr20:50721803..50721857,-!p2@ZFP64!0.63!5.59!ZFP64;;chr11:46299186..46299195,+!p3@CREB3L1!0.63!3.73!CREB3L1;;chr3:141087562..141087594,+!p12@ZBTB38!0.63!3.26!ZBTB38;;chr7:19157043..19157088,-!p2@TWIST1!0.62!9.01!TWIST1;;chr12:66218573..66218596,+!p7@HMGA2!0.62!5.12!HMGA2;;chr2:66662249..66662267,+!p2@MEIS1!0.61!13.66!MEIS1;;chr9:16870710..16870763,-!p1@BNC2!0.61!5.90!BNC2;;chr15:57511609..57511651,+!p2@TCF12!0.61!5.59!TCF12;;chr12:54447599..54447630,+!p3@HOXC4!0.61!3.88!HOXC4;;chr11:32457103..32457123,-!p3@WT1!0.61!3.11!WT1;;chr11:32457413..32457431,-!p2@WT1!0.61!3.11!WT1;;chr7:27183114..27183138,-!p3@HOXA5!0.61!3.11!HOXA5;;chr15:96874012..96874042,+!p2@NR2F2!0.60!32.45!NR2F2;;chr5:137804484..137804498,+!p2@EGR1!0.60!13.97!EGR1;;chr14:24837368..24837401,+!p1@NFATC4!0.60!8.07!NFATC4;;chr18:19749517..19749531,+!p3@GATA6!0.60!5.90!GATA6;;chr7:27153454..27153469,-!p2@HOXA3!0.60!2.95!HOXA3;;chr7:14029283..14029311,-!p1@ETV1!0.59!18.63!ETV1;;chr7:44143978..44143989,+!p2@AEBP1!0.59!5.90!AEBP1;;chrX:66763856..66763896,+!p1@AR!0.59!4.50!AR;;chr14:62162285..62162296,+!p3@HIF1A!0.58!17.54!HIF1A;;chr7:14028743..14028799,-!p3@ETV1!0.58!3.73!ETV1;;chr9:16870659..16870675,-!p2@BNC2!0.58!3.57!BNC2;;chr12:26277798..26277809,-!p5@BHLHE41!0.58!2.79!BHLHE41;;chr15:83953373..83953386,-!p2@BNC1!0.58!2.79!BNC1;;chr2:101436564..101436647,+!p1@NPAS2!0.57!68.01!NPAS2;;chr1:158979872..158979898,+!p3@IFI16!0.57!9.94!IFI16;;chr17:46621101..46621143,-!p7@HOXB2!0.57!3.88!HOXB2;;chr3:101568349..101568365,+!p1@NFKBIZ!0.56!172.19!NFKBIZ;;chr10:63809106..63809127,+!p1@ARID5B!0.56!44.25!ARID5B;;chr17:41622925..41622976,-!p3@ETV4!0.56!4.35!ETV4;;chrX:66763815..66763854,+!p2@AR!0.56!3.73!AR;;chr8:77593750..77593757,+!p3@ZFHX4!0.56!2.64!ZFHX4;;chr15:96869165..96869183,+!p20@NR2F2!0.56!2.64!NR2F2;;chr8:22550982..22550999,-!p1@EGR3!0.55!8.54!EGR3;;chr17:46621937..46621966,-!p2@HOXB2!0.55!8.07!HOXB2;;chr11:65686802..65686818,+!p6@DRAP1!0.55!4.97!DRAP1;;chr2:200322654..200322707,-!p2@SATB2!0.55!4.04!SATB2;;chr7:28448995..28449011,+!p4@CREB5!0.55!3.88!CREB5;;chrX:128657457..128657475,-!p1@SMARCA1!0.54!35.87!SMARCA1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.54!27.33!PPP1R13L;;chr7:28448965..28448994,+!p2@CREB5!0.54!10.56!CREB5;;chr21:36259445..36259519,-!p4@RUNX1!0.54!8.23!RUNX1;;chr13:74708372..74708409,-!p4@KLF12!0.54!6.68!KLF12;;chr3:25469724..25469773,+!p1@RARB!0.54!3.88!RARB;;chr6:28321971..28321995,-!p1@ZNF323!0.54!2.48!ZNF323;;chr8:72756194..72756208,-!p9@MSC!0.54!2.48!MSC;;chr15:96869206..96869220,+!p21@NR2F2!0.54!2.48!NR2F2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.53!218.92!TAX1BP3;;chr5:72744594..72744609,-!p1@FOXD1!0.53!13.66!FOXD1;;chr11:65687362..65687436,+!p3@DRAP1!0.53!13.51!DRAP1;;chr7:19157248..19157268,-!p1@TWIST1!0.53!7.92!TWIST1;;chr18:53068911..53068935,-!p4@TCF4!0.53!2.79!TCF4;;chr20:42543441..42543497,+!p1@TOX2!0.52!12.89!TOX2;;chr17:41623009..41623053,-!p4@ETV4!0.52!4.19!ETV4;;chr1:151032739..151032748,+!p6@MLLT11!0.52!3.11!MLLT11;;chr6:85473156..85473210,-!p2@TBX18!0.52!2.95!TBX18;;chr2:102091478..102091490,-!p3@RFX8!0.52!2.33!RFX8;;chr17:46621146..46621180,-!p10@HOXB2!0.52!2.33!HOXB2;;chr12:115121587..115121597,-!p10@TBX3!0.52!2.33!TBX3;;chr12:115122318..115122331,-!p2@TBX3!0.52!2.33!TBX3;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.52!2.33!HOXC5;;chr12:66218904..66218913,+!p11@HMGA2!0.52!2.33!HMGA2;;chr12:80085120..80085156,-!p14@PAWR!0.52!2.33!PAWR;;chr12:124873357..124873401,-!p1@NCOR2!0.51!34.16!NCOR2;;chr4:4861385..4861398,+!p1@MSX1!0.51!8.23!MSX1;;chr8:116681409..116681431,-!p2@TRPS1!0.51!7.45!TRPS1;;chr12:80085061..80085119,-!p6@PAWR!0.51!4.04!PAWR;;chr10:35484804..35484902,+!p2@CREM!0.50!10.40!CREM;;chr8:116680215..116680245,-!p6@TRPS1!0.50!3.88!TRPS1;;chr5:142780237..142780261,-!p7@NR3C1!0.50!2.17!NR3C1;;chr8:72756380..72756427,-!p8@MSC!0.50!2.17!MSC;;chr1:170632028..170632043,+!p20@PRRX1!0.50!2.17!PRRX1;;chr1:44513995..44514031,+!p1@KLF17!0.50!2.17!KLF17;;chr12:54394059..54394088,+!p3@HOXC9!0.50!2.17!HOXC9;;chr17:46621279..46621297,-!p13@HOXB2!0.50!2.17!HOXB2;;chr3:170075436..170075520,+!p1@SKIL!0.49!61.17!SKIL;;chr6:126240380..126240430,+!p2@NCOA7!0.49!6.68!NCOA7;;chr17:41622765..41622821,-!p2@ETV4!0.49!3.57!ETV4;;chr14:62213758..62213774,+!p8@HIF1A!0.49!2.95!HIF1A;;chr19:45260775..45260838,+!p5@BCL3!0.49!2.95!BCL3;;chr14:75745523..75745537,+!p1@FOS!0.48!333.82!FOS;;chr1:120190786..120190915,-!p1@ZNF697!0.48!19.56!ZNF697;;chr5:72744445..72744466,-!p2@FOXD1!0.48!3.88!FOXD1;;chr15:96876966..96877017,+!p12@NR2F2!0.48!3.26!NR2F2;;chr17:46622175..46622186,-!p12@HO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;chr10:119302232..119302265,+!p1@EMX2!0.17!0.47!EMX2;;chr10:119302508..119302559,+!p5@EMX2!0.17!0.47!EMX2;;chr10:135121763..135121783,+!p5@ZNF511!0.17!0.47!ZNF511;;chr10:28032421..28032494,-!p2@MKX!0.17!0.47!MKX;;chr10:35416172..35416184,+!p13@CREM!0.17!0.47!CREM;;chr10:45495946..45495976,+!p2@ZNF22!0.17!0.47!ZNF22;;chr11:16627528..16627550,-!p7@SOX6!0.17!0.47!SOX6;;chr11:19262461..19262476,-!p5@E2F8!0.17!0.47!E2F8;;chr11:32457185..32457193,-!p7@WT1!0.17!0.47!WT1;;chr11:34642612..34642646,+!p1@EHF!0.17!0.47!EHF;;chr11:65430617..65430624,-!p8@RELA!0.17!0.47!RELA;;chr11:65480222..65480241,+!p4@KAT5!0.17!0.47!KAT5;;chr11:85393886..85393913,-!p3@CREBZF!0.17!0.47!CREBZF;;chr12:115122297..115122302,-!p15@TBX3!0.17!0.47!TBX3;;chr12:12794994..12795024,+!p5@CREBL2!0.17!0.47!CREBL2;;chr12:54378923..54378966,+!p1@HOXC10!0.17!0.47!HOXC10;;chr12:57853596..57853613,+!p3@GLI1!0.17!0.47!GLI1;;chr12:72056897..72056908,+!p12@THAP2!0.17!0.47!THAP2;;chr12:80084120..80084136,-!p15@PAWR!0.17!0.47!PAWR;;chr13:37494306..37494324,-!p4@SMAD9!0.17!0.47!SMAD9;;chr13:46543936..46543949,-!p19@ZC3H13!0.17!0.47!ZC3H13;;chr19:45254481..45254495,+!p13@BCL3!0.17!0.47!BCL3;;chr19:54024313..54024361,+!p7@ZNF331!0.17!0.47!ZNF331;;chr19:54058073..54058088,+!p1@ZNF331!0.17!0.47!ZNF331;;chr1:114301553..114301576,-!p6@PHTF1!0.17!0.47!PHTF1;;chr1:151032957..151032968,+!p7@MLLT11!0.17!0.47!MLLT11;;chr1:158985686..158985719,+!p15@IFI16!0.17!0.47!IFI16;;chr1:170632325..170632339,+!p24@PRRX1!0.17!0.47!PRRX1;;chr1:170632907..170632916,+!p22@PRRX1!0.17!0.47!PRRX1;;chr1:170633225..170633230,+!p25@PRRX1!0.17!0.47!PRRX1;;chr1:212873162..212873188,-!p3@BATF3!0.17!0.47!BATF3;;chr1:221053444..221053473,+!p8@HLX!0.17!0.47!HLX;;chr1:8763282..8763291,-!p32@RERE!0.17!0.47!RERE;;chr20:55205791..55205817,+!p3@TFAP2C!0.17!0.47!TFAP2C;;chr20:61051039..61051057,-!p1@GATA5!0.17!0.47!GATA5;;chr21:38071403..38071428,+!p2@SIM2!0.17!0.47!SIM2;;chr5:121465294..121465301,+!p4@ZNF474!0.17!0.47!ZNF474;;chr6:152011695..152011709,+!p6@ESR1!0.17!0.47!ESR1;;chr6:15245752..15245767,+!p14@JARID2!0.17!0.47!JARID2;;chr6:1612300..1612324,+!p3@FOXC1!0.17!0.47!FOXC1;;chr6:21597687..21597708,+!p14@SOX4!0.17!0.47!SOX4;;chr6:27356595..27356611,+!p6@ZNF391!0.17!0.47!ZNF391;;chr6:28321811..28321824,-!p8@ZNF323!0.17!0.47!ZNF323;;chr6:45389893..45389902,+!p21@RUNX2!0.17!0.47!RUNX2;;chr7:14029034..14029087,-!p5@ETV1!0.17!0.47!ETV1;;chr7:150102756..150102772,+!p5@ZNF775!0.17!0.47!ZNF775;;chr7:1577076..1577095,+!p5@MAFK!0.17!0.47!MAFK;;chr7:1577952..1577963,+!p8@MAFK!0.17!0.47!MAFK;;chr7:27153590..27153608,-!p7@HOXA3!0.17!0.47!HOXA3;;chr7:27195867..27195893,-!p3@HOXA7!0.17!0.47!HOXA7;;chr7:27213893..27213954,-!p1@HOXA10!0.17!0.47!HOXA10;;chr8:103668114..103668134,-!p5@KLF10!0.17!0.47!KLF10;;chr8:30890810..30890880,-!p1@PURG!0.17!0.47!PURG;;chr8:55370884..55370896,+!p5@SOX17!0.17!0.47!SOX17;;chr15:31658288..31658338,+!p4@KLF13!0.17!0.47!KLF13;;chr15:57025732..57025743,-!p6@ZNF280D!0.17!0.47!ZNF280D;;chr15:57511589..57511608,+!p4@TCF12!0.17!0.47!TCF12;;chr15:61521462..61521482,-!p4@RORA!0.17!0.47!RORA;;chr15:67430381..67430396,+!p21@SMAD3!0.17!0.47!SMAD3;;chr15:96869394..96869405,+!p25@NR2F2!0.17!0.47!NR2F2;;chr16:30406423..30406447,+!p4@ZNF48!0.17!0.47!ZNF48;;chr16:51185318..51185348,-!p2@SALL1!0.17!0.47!SALL1;;chr16:67881647..67881663,-!p3@CENPT!0.17!0.47!CENPT;;chr16:69419590..69419601,-!p5@TERF2!0.17!0.47!TERF2;;chr17:17740823..17740833,-!p8@SREBF1!0.17!0.47!SREBF1;;chr17:3571934..3571935,-!p3@TAX1BP3!0.17!0.47!TAX1BP3;;chr17:41277334..41277348,-!p6@BRCA1!0.17!0.47!BRCA1;;chr17:41622901..41622913,-!p16@ETV4!0.17!0.47!ETV4;;chr17:46655578..46655589,-!p4@HOXB4!0.17!0.47!HOXB4;;chr17:46675344..46675355,-!p9@HOXB6!0.17!0.47!HOXB6;;chr17:46687935..46687950,-!p3@HOXB7!0.17!0.47!HOXB7;;chr17:7382810..7382822,-!p12@ZBTB4!0.17!0.47!ZBTB4;;chr18:19751305..19751324,+!p9@GATA6!0.17!0.47!GATA6;;chr18:45935720..45935772,-!p1@ZBTB7C!0.17!0.47!ZBTB7C;;chr18:52894476..52894484,-!p41@TCF4!0.17!0.47!TCF4;;chr18:52988952..52988965,-!p23@TCF4!0.17!0.47!TCF4;;chr18:53089453..53089482,-!p11@TCF4!0.17!0.47!TCF4;;chr18:53255379..53255382,-!p45@TCF4!0.17!0.47!TCF4;;chr19:12267577..12267593,-!p3@ZNF625!0.17!0.47!ZNF625;;chr19:13135582..13135600,+!p3@NFIX!0.17!0.47!NFIX;;chr19:1622138..1622153,-!p7@TCF3!0.17!0.47!TCF3;;chr19:1863437..1863446,-!p5@KLF16!0.17!0.47!KLF16;;chrX:66763914..66763933,+!p3@AR!0.17!0.47!AR;;chr9:130966497..130966541,-!p4@CIZ1!0.17!0.47!CIZ1;;chr8:37553292..37553317,+!p1@ZNF703!0.16!30.28!ZNF703;;chr4:103422499..103422632,+!p1@NFKB1!0.16!26.86!NFKB1;;chr12:77459306..77459365,-!p1@E2F7!0.16!15.68!E2F7;;chr16:29817617..29817664,+!p4@MAZ!0.16!13.20!MAZ;;chr2:42795745..42795824,+!p1@MTA3!0.16!11.33!MTA3;;chr10:21823128..21823216,+!p1@MLLT10!0.16!11.18!MLLT10;;chr18:72265084..72265143,+!p1@ZNF407!0.16!9.16!ZNF407;;chr19:1592714..1592762,-!p1@MBD3!0.16!9.16!MBD3;;chr3:71179699..71179744,-!p2@FOXP1!0.16!9.16!FOXP1;;chr11:65479702..65479731,+!p1@KAT5!0.16!7.61!KAT5;;chr10:104154246..104154347,+!p3@NFKB2!0.16!7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|sample_dev_stage=
+
|ffid_belonging_in_development=CL:0000134
|sample_tissue=ovary
 
|sample_donor(cell lot)=
 
|sample_sex=
 
|sample_age=
 
|sample_ethnicity=
 
|rna_rin=
 
|rna_od260/230=2.14
 
|rna_od260/280=2.1
 
|sample_cell_type=mesenchymal precursor cell
 
|sample_cell_line=
 
|sample_collaboration=Claudio Schneider LNCIB
 
|sample_experimental_condition=
 
|sample_disease=
 
|rna_sample_type=
 
|rna_extraction_protocol=
 
|rna_weight_ug=31.58265
 
|rna_concentration=0.57423
 
|sample_note=
 
|profile_hcage=CNhs12376,LSID914,release011,COMPLETED
 
|profile_cagescan=,,,
 
|profile_srnaseq=,,,
 
|profile_rnaseq=,,,
 
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371
 
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000474,UBERON:0000479,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0000990,UBERON:0000991,UBERON:0000992,UBERON:0001048,UBERON:0001062,UBERON:0002050,UBERON:0002119,UBERON:0002323,UBERON:0002384,UBERON:0002532,UBERON:0002553,UBERON:0003100,UBERON:0003133,UBERON:0003134,UBERON:0004120,UBERON:0004176,UBERON:0004458,UBERON:0004531,UBERON:0005156,UBERON:0005423,UBERON:0005564,UBERON:0009117,UBERON:0009196
 
|ancestors_in_disease_facet=DOID:0050686,DOID:120,DOID:14566,DOID:162,DOID:193,DOID:2394,DOID:4
 
|sample_description=
 
 
|fonse_cell_line=
 
|fonse_cell_line=
 
|fonse_cell_line_closure=
 
|fonse_cell_line_closure=
Line 66: Line 40:
 
|fonse_treatment=
 
|fonse_treatment=
 
|fonse_treatment_closure=
 
|fonse_treatment_closure=
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|comment=
 
|created_by=
 
|creation_date=
 
|def=
 
 
|has_quality=
 
|has_quality=
|is_a=EFO:0002091;;FF:0000002;;FF:0000210;;FF:0000273
+
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520left%2520ovary%252c%2520donor3.CNhs12376.11760-123H5.hg19.nobarcode.bam
 +
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520left%2520ovary%252c%2520donor3.CNhs12376.11760-123H5.hg19.ctss.bed.gz
 +
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520left%2520ovary%252c%2520donor3.CNhs12376.11760-123H5.hg19.nobarcode.rdna.fa.gz
 +
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520left%2520ovary%252c%2520donor3.CNhs12376.11760-123H5.hg38.nobarcode.bam
 +
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520left%2520ovary%252c%2520donor3.CNhs12376.11760-123H5.hg38.nobarcode.ctss.bed.gz
 +
|id=FF:11760-123H5
 +
|is_a=EFO:0002091;;FF:0000273
 +
|is_obsolete=
 +
|library_id=CNhs12376
 +
|library_id_phase_based=2:CNhs12376
 +
|microRNAs=
 +
|microRNAs_nn=
 +
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11760
 +
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11760
 +
|name=mesenchymal precursor cell - ovarian cancer left ovary, donor3
 
|namespace=FANTOM5
 
|namespace=FANTOM5
 
|part_of=
 
|part_of=
 +
|profile_cagescan=,,,
 +
|profile_hcage=CNhs12376,LSID914,release011,COMPLETED
 +
|profile_rnaseq=
 +
|profile_srnaseq=,,,
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|refex=http://refex.dbcls.jp/genelist.php?lang
 +
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 +
|rna_box=123
 +
|rna_catalog_number=
 +
|rna_concentration=0.57423
 +
|rna_extraction_protocol=
 +
|rna_lot_number=
 +
|rna_od260/230=2.14
 +
|rna_od260/280=2.1
 +
|rna_position=H5
 +
|rna_rin=
 +
|rna_sample_type=
 +
|rna_tube_id=123H5
 +
|rna_weight_ug=31.58265
 +
|sample_age=
 +
|sample_category=primary cells
 +
|sample_cell_catalog=
 +
|sample_cell_line=
 +
|sample_cell_lot=SOC-57-01
 +
|sample_cell_type=mesenchymal precursor cell
 +
|sample_collaboration=Claudio Schneider LNCIB
 +
|sample_company=
 +
|sample_description=
 +
|sample_dev_stage=
 +
|sample_disease=
 +
|sample_donor(cell lot)=
 +
|sample_ethnicity=
 +
|sample_experimental_condition=
 +
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.331056133794e-224!GO:0005737;cytoplasm;3.10241371528091e-197!GO:0043226;organelle;4.28988227121289e-173!GO:0043229;intracellular organelle;1.21229082621565e-172!GO:0043231;intracellular membrane-bound organelle;1.51304171025055e-169!GO:0043227;membrane-bound organelle;2.85678546785092e-169!GO:0044444;cytoplasmic part;3.82861243015052e-139!GO:0044422;organelle part;1.85754176205128e-133!GO:0044446;intracellular organelle part;7.55749509271048e-132!GO:0032991;macromolecular complex;7.45071576983701e-90!GO:0005515;protein binding;1.10517329444142e-86!GO:0044238;primary metabolic process;9.04840741726468e-79!GO:0044237;cellular metabolic process;1.63207043081952e-77!GO:0030529;ribonucleoprotein complex;3.45825010106114e-77!GO:0043170;macromolecule metabolic process;2.86490939636076e-72!GO:0043233;organelle lumen;8.86295536718475e-64!GO:0031974;membrane-enclosed lumen;8.86295536718475e-64!GO:0044428;nuclear part;3.58099585593638e-61!GO:0003723;RNA binding;3.49815494439109e-59!GO:0005739;mitochondrion;1.48073430163629e-57!GO:0005634;nucleus;1.48073430163629e-57!GO:0031090;organelle membrane;6.08383875067938e-53!GO:0019538;protein metabolic process;8.42930328020123e-53!GO:0016043;cellular component organization and biogenesis;5.80024888673769e-49!GO:0044260;cellular macromolecule metabolic process;5.52335175947651e-47!GO:0005840;ribosome;5.57558623635093e-47!GO:0044267;cellular protein metabolic process;1.27422334311271e-46!GO:0043234;protein complex;1.44056373983544e-45!GO:0006412;translation;6.82316869250271e-45!GO:0015031;protein transport;3.12532254107947e-44!GO:0033036;macromolecule localization;5.21543560265428e-44!GO:0003735;structural constituent of ribosome;1.08518802947715e-41!GO:0045184;establishment of protein localization;3.86766140700537e-41!GO:0008104;protein localization;4.33289042538617e-41!GO:0005829;cytosol;7.21393030269831e-41!GO:0006396;RNA processing;1.18333461015725e-40!GO:0044429;mitochondrial part;2.05122949098723e-39!GO:0009058;biosynthetic process;2.24306929582405e-39!GO:0031967;organelle envelope;1.3122671464569e-37!GO:0031975;envelope;3.24499432176187e-37!GO:0031981;nuclear lumen;6.65360466139207e-37!GO:0033279;ribosomal subunit;9.49948479088558e-37!GO:0043283;biopolymer metabolic process;1.47344270638605e-36!GO:0009059;macromolecule biosynthetic process;2.45698191458715e-36!GO:0046907;intracellular transport;2.92575042183257e-35!GO:0044249;cellular biosynthetic process;4.02288673299965e-35!GO:0016071;mRNA metabolic process;1.41485519921745e-32!GO:0008380;RNA splicing;2.76656824935167e-32!GO:0010467;gene expression;1.10002583087265e-30!GO:0006996;organelle organization and biogenesis;2.70028257626673e-30!GO:0043228;non-membrane-bound organelle;1.34010772804535e-29!GO:0043232;intracellular non-membrane-bound organelle;1.34010772804535e-29!GO:0006886;intracellular protein transport;1.07585986061716e-28!GO:0006397;mRNA processing;1.17183581391609e-28!GO:0065003;macromolecular complex assembly;1.55455625614341e-28!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.06530573497255e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.25390109198316e-27!GO:0005740;mitochondrial envelope;1.22420586080245e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.62145721852655e-25!GO:0022607;cellular component assembly;2.66774759304072e-25!GO:0005783;endoplasmic reticulum;2.722954619191e-25!GO:0031966;mitochondrial membrane;3.33718956632758e-25!GO:0019866;organelle inner membrane;1.69408908796991e-24!GO:0012505;endomembrane system;7.417044413355e-24!GO:0044445;cytosolic part;7.14356644877987e-23!GO:0051641;cellular localization;7.29795173517008e-23!GO:0051649;establishment of cellular localization;7.33851183991367e-23!GO:0005743;mitochondrial inner membrane;8.50304249670744e-23!GO:0005654;nucleoplasm;1.58612637686963e-22!GO:0005681;spliceosome;2.46545759595763e-22!GO:0006119;oxidative phosphorylation;2.97877334723706e-22!GO:0006259;DNA metabolic process;2.96062317738629e-21!GO:0006457;protein folding;2.96926417468562e-21!GO:0044455;mitochondrial membrane part;3.47202664781637e-20!GO:0016462;pyrophosphatase activity;7.18158748320364e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;9.57212757993179e-20!GO:0005794;Golgi apparatus;1.04584156256331e-19!GO:0000166;nucleotide binding;1.57355545055579e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;1.63001529127855e-19!GO:0015934;large ribosomal subunit;1.88270594156699e-19!GO:0048770;pigment granule;2.63037399710549e-19!GO:0042470;melanosome;2.63037399710549e-19!GO:0017111;nucleoside-triphosphatase activity;5.28124133245747e-19!GO:0007049;cell cycle;7.24660684862731e-19!GO:0015935;small ribosomal subunit;2.95414722238656e-18!GO:0044432;endoplasmic reticulum part;3.63380223340402e-18!GO:0044451;nucleoplasm part;8.31280223446988e-18!GO:0043285;biopolymer catabolic process;2.93959168247894e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;6.96165312426311e-17!GO:0000502;proteasome complex (sensu Eukaryota);6.98894174788644e-17!GO:0030163;protein catabolic process;1.03621631436203e-16!GO:0008134;transcription factor binding;1.0741620868272e-16!GO:0005746;mitochondrial respiratory chain;1.13812483139942e-16!GO:0019941;modification-dependent protein catabolic process;1.23974461270549e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.23974461270549e-16!GO:0044257;cellular protein catabolic process;1.73780493447423e-16!GO:0006511;ubiquitin-dependent protein catabolic process;2.04228732196769e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.48713112289793e-16!GO:0048193;Golgi vesicle transport;2.7601665184463e-16!GO:0044265;cellular macromolecule catabolic process;3.99107142495564e-16!GO:0009057;macromolecule catabolic process;4.74441596755822e-16!GO:0022618;protein-RNA complex assembly;8.4353833854616e-16!GO:0031980;mitochondrial lumen;1.61410211354511e-15!GO:0005759;mitochondrial matrix;1.61410211354511e-15!GO:0050136;NADH dehydrogenase (quinone) activity;2.42417479944228e-15!GO:0003954;NADH dehydrogenase activity;2.42417479944228e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.42417479944228e-15!GO:0006512;ubiquitin cycle;4.61995998393723e-15!GO:0016874;ligase activity;5.40422002390398e-15!GO:0005730;nucleolus;1.15537440535385e-14!GO:0006605;protein targeting;1.94972891036178e-14!GO:0022402;cell cycle process;2.15784832531421e-14!GO:0032553;ribonucleotide binding;2.38101661344101e-14!GO:0032555;purine ribonucleotide binding;2.38101661344101e-14!GO:0051082;unfolded protein binding;3.56522230798097e-14!GO:0003676;nucleic acid binding;4.57804521468983e-14!GO:0017076;purine nucleotide binding;5.27871222433342e-14!GO:0051186;cofactor metabolic process;5.49020177776625e-14!GO:0016192;vesicle-mediated transport;6.1244600366577e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.35872792824014e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.5616207871552e-13!GO:0008135;translation factor activity, nucleic acid binding;1.57038616256924e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.97437220307515e-13!GO:0044248;cellular catabolic process;1.97493798466051e-13!GO:0005793;ER-Golgi intermediate compartment;2.00816473683724e-13!GO:0012501;programmed cell death;2.08343943525985e-13!GO:0030964;NADH dehydrogenase complex (quinone);2.18571256507157e-13!GO:0045271;respiratory chain complex I;2.18571256507157e-13!GO:0005747;mitochondrial respiratory chain complex I;2.18571256507157e-13!GO:0005761;mitochondrial ribosome;2.25999492310655e-13!GO:0000313;organellar ribosome;2.25999492310655e-13!GO:0042775;organelle ATP synthesis coupled electron transport;2.50083422499875e-13!GO:0042773;ATP synthesis coupled electron transport;2.50083422499875e-13!GO:0043412;biopolymer modification;3.96649656297896e-13!GO:0006915;apoptosis;5.48810813286929e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.89920958820887e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.25954629093312e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;2.65587063547993e-12!GO:0000375;RNA splicing, via transesterification reactions;2.65587063547993e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.65587063547993e-12!GO:0000278;mitotic cell cycle;2.65587063547993e-12!GO:0009055;electron carrier activity;3.15333939723964e-12!GO:0048523;negative regulation of cellular process;3.71669166116707e-12!GO:0005789;endoplasmic reticulum membrane;4.63120424277903e-12!GO:0006464;protein modification process;4.74902298134161e-12!GO:0008219;cell death;5.67133504134068e-12!GO:0016265;death;5.67133504134068e-12!GO:0005635;nuclear envelope;1.06369556209788e-11!GO:0006732;coenzyme metabolic process;3.59546420779248e-11!GO:0006974;response to DNA damage stimulus;3.67593528845985e-11!GO:0016070;RNA metabolic process;4.00203660456806e-11!GO:0031965;nuclear membrane;5.59240055367867e-11!GO:0003712;transcription cofactor activity;6.15710818242047e-11!GO:0003743;translation initiation factor activity;1.15303335826188e-10!GO:0005524;ATP binding;1.15825400865819e-10!GO:0042254;ribosome biogenesis and assembly;1.25323647918946e-10!GO:0048519;negative regulation of biological process;1.47077118121751e-10!GO:0032559;adenyl ribonucleotide binding;2.83600247155432e-10!GO:0000074;regulation of progression through cell cycle;3.38407487295074e-10!GO:0009259;ribonucleotide metabolic process;4.93723375077247e-10!GO:0051726;regulation of cell cycle;5.11203579762818e-10!GO:0005694;chromosome;6.3858621535885e-10!GO:0006163;purine nucleotide metabolic process;6.41499436594394e-10!GO:0030554;adenyl nucleotide binding;7.27321435117448e-10!GO:0043687;post-translational protein modification;8.60548238046707e-10!GO:0016604;nuclear body;9.24436665620892e-10!GO:0006413;translational initiation;9.6693162841046e-10!GO:0044453;nuclear membrane part;1.15606037610059e-09!GO:0009150;purine ribonucleotide metabolic process;1.37284592595709e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.5743893918238e-09!GO:0006888;ER to Golgi vesicle-mediated transport;1.96395980243019e-09!GO:0003924;GTPase activity;1.9912456253874e-09!GO:0051276;chromosome organization and biogenesis;2.14630150383076e-09!GO:0006913;nucleocytoplasmic transport;2.25191813226106e-09!GO:0006164;purine nucleotide biosynthetic process;2.61535666862546e-09!GO:0044427;chromosomal part;2.84985155301144e-09!GO:0051169;nuclear transport;4.48613747860896e-09!GO:0006281;DNA repair;4.88681259548888e-09!GO:0009152;purine ribonucleotide biosynthetic process;5.41123596546445e-09!GO:0005788;endoplasmic reticulum lumen;5.41123596546445e-09!GO:0006446;regulation of translational initiation;5.77948749454793e-09!GO:0043069;negative regulation of programmed cell death;6.33614302646253e-09!GO:0008639;small protein conjugating enzyme activity;6.93467284949446e-09!GO:0005768;endosome;7.01560571271102e-09!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;7.02083895852682e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.36154828779128e-09!GO:0043067;regulation of programmed cell death;7.36680416118849e-09!GO:0044431;Golgi apparatus part;7.65498572972024e-09!GO:0009260;ribonucleotide biosynthetic process;7.72331758478327e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;9.06812023930794e-09!GO:0008565;protein transporter activity;9.90561431025797e-09!GO:0016887;ATPase activity;1.01625684735568e-08!GO:0009056;catabolic process;1.15612715087062e-08!GO:0042981;regulation of apoptosis;1.18587778023394e-08!GO:0004842;ubiquitin-protein ligase activity;1.20527832600785e-08!GO:0009141;nucleoside triphosphate metabolic process;1.3333278496779e-08!GO:0019787;small conjugating protein ligase activity;1.34900373772755e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.41757226161637e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.46917817253177e-08!GO:0042623;ATPase activity, coupled;1.80635995998263e-08!GO:0050794;regulation of cellular process;1.83014124300854e-08!GO:0043066;negative regulation of apoptosis;1.83014124300854e-08!GO:0051301;cell division;1.9752373018397e-08!GO:0000087;M phase of mitotic cell cycle;2.28268471033858e-08!GO:0030120;vesicle coat;2.43400652769296e-08!GO:0030662;coated vesicle membrane;2.43400652769296e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.43400652769296e-08!GO:0009144;purine nucleoside triphosphate metabolic process;2.43400652769296e-08!GO:0006323;DNA packaging;2.64145615239211e-08!GO:0006461;protein complex assembly;2.83191340381895e-08!GO:0015986;ATP synthesis coupled proton transport;2.83191340381895e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.83191340381895e-08!GO:0006366;transcription from RNA polymerase II promoter;2.96721462980253e-08!GO:0007067;mitosis;3.04720784950274e-08!GO:0006916;anti-apoptosis;3.60453339582873e-08!GO:0009060;aerobic respiration;3.65475584077887e-08!GO:0051246;regulation of protein metabolic process;4.11643876702787e-08!GO:0009142;nucleoside triphosphate biosynthetic process;4.83927411589936e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.83927411589936e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.25791133401948e-08!GO:0007249;I-kappaB kinase/NF-kappaB cascade;5.28931081903933e-08!GO:0022403;cell cycle phase;5.79285634090967e-08!GO:0006260;DNA replication;6.25309466164969e-08!GO:0006399;tRNA metabolic process;6.42790069560737e-08!GO:0016607;nuclear speck;7.66297737616725e-08!GO:0009719;response to endogenous stimulus;7.75334894237336e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;8.09417551895225e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;8.09417551895225e-08!GO:0016881;acid-amino acid ligase activity;8.10363113988173e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;8.14290747752831e-08!GO:0017038;protein import;9.30903448752981e-08!GO:0004386;helicase activity;1.07700847041952e-07!GO:0019829;cation-transporting ATPase activity;1.18366855105099e-07!GO:0065004;protein-DNA complex assembly;1.34656468250763e-07!GO:0045333;cellular respiration;1.53192619743286e-07!GO:0046034;ATP metabolic process;1.58852267205282e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.84524136481909e-07!GO:0031988;membrane-bound vesicle;2.66822054162527e-07!GO:0005643;nuclear pore;2.70036762597464e-07!GO:0016023;cytoplasmic membrane-bound vesicle;2.95252186609855e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.15738340479882e-07!GO:0004812;aminoacyl-tRNA ligase activity;3.15738340479882e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.15738340479882e-07!GO:0031252;leading edge;3.39568143136554e-07!GO:0000785;chromatin;3.39607455603082e-07!GO:0051188;cofactor biosynthetic process;3.62336725522465e-07!GO:0006333;chromatin assembly or disassembly;3.72251644151733e-07!GO:0008026;ATP-dependent helicase activity;3.7480258260946e-07!GO:0048475;coated membrane;3.91274784017744e-07!GO:0030117;membrane coat;3.91274784017744e-07!GO:0043038;amino acid activation;3.98265558164967e-07!GO:0006418;tRNA aminoacylation for protein translation;3.98265558164967e-07!GO:0043039;tRNA aminoacylation;3.98265558164967e-07!GO:0005839;proteasome core complex (sensu Eukaryota);4.35425584364482e-07!GO:0006754;ATP biosynthetic process;4.3704784558853e-07!GO:0006753;nucleoside phosphate metabolic process;4.3704784558853e-07!GO:0000139;Golgi membrane;4.44079938330061e-07!GO:0016787;hydrolase activity;4.55238447609925e-07!GO:0015630;microtubule cytoskeleton;4.57103068014844e-07!GO:0006099;tricarboxylic acid cycle;4.61324230236101e-07!GO:0046356;acetyl-CoA catabolic process;4.61324230236101e-07!GO:0005525;GTP binding;5.13475870483009e-07!GO:0016491;oxidoreductase activity;5.22311841398713e-07!GO:0006364;rRNA processing;8.78593300211652e-07!GO:0065002;intracellular protein transport across a membrane;8.78864358784324e-07!GO:0031982;vesicle;9.97151328751927e-07!GO:0007005;mitochondrion organization and biogenesis;9.97151328751927e-07!GO:0051187;cofactor catabolic process;1.11467409719915e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.14546224729239e-06!GO:0003714;transcription corepressor activity;1.19494677685775e-06!GO:0009117;nucleotide metabolic process;1.2943416231983e-06!GO:0031410;cytoplasmic vesicle;1.41585999915583e-06!GO:0016072;rRNA metabolic process;1.57459431432077e-06!GO:0044440;endosomal part;1.82903953342113e-06!GO:0010008;endosome membrane;1.82903953342113e-06!GO:0006084;acetyl-CoA metabolic process;2.02215988457221e-06!GO:0016853;isomerase activity;2.0608475749554e-06!GO:0009109;coenzyme catabolic process;2.14995050578002e-06!GO:0004298;threonine endopeptidase activity;2.44947930791225e-06!GO:0006793;phosphorus metabolic process;3.02386295860517e-06!GO:0006796;phosphate metabolic process;3.02386295860517e-06!GO:0016469;proton-transporting two-sector ATPase complex;3.5037196997395e-06!GO:0045259;proton-transporting ATP synthase complex;3.53119969257987e-06!GO:0043566;structure-specific DNA binding;3.57223146075159e-06!GO:0003697;single-stranded DNA binding;4.03613390390132e-06!GO:0046930;pore complex;4.10082188271779e-06!GO:0006403;RNA localization;4.53713609385803e-06!GO:0048522;positive regulation of cellular process;4.75898513730795e-06!GO:0045786;negative regulation of progression through cell cycle;4.78402963367053e-06!GO:0000245;spliceosome assembly;4.79678495434238e-06!GO:0006334;nucleosome assembly;4.80703172122091e-06!GO:0005769;early endosome;4.98053442057641e-06!GO:0006613;cotranslational protein targeting to membrane;5.01229955821872e-06!GO:0032561;guanyl ribonucleotide binding;5.31252802151825e-06!GO:0019001;guanyl nucleotide binding;5.31252802151825e-06!GO:0050657;nucleic acid transport;6.04210082504035e-06!GO:0051236;establishment of RNA localization;6.04210082504035e-06!GO:0050658;RNA transport;6.04210082504035e-06!GO:0005798;Golgi-associated vesicle;6.19506762414253e-06!GO:0000279;M phase;7.0924761858127e-06!GO:0005770;late endosome;7.11686362729337e-06!GO:0050789;regulation of biological process;7.81363740331441e-06!GO:0006752;group transfer coenzyme metabolic process;8.43158493132865e-06!GO:0016564;transcription repressor activity;8.62748630707767e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;9.79344051323067e-06!GO:0009108;coenzyme biosynthetic process;9.88016348937127e-06!GO:0032446;protein modification by small protein conjugation;1.00641889144053e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.01726799080499e-05!GO:0051170;nuclear import;1.09539782444985e-05!GO:0045454;cell redox homeostasis;1.21154202327188e-05!GO:0016859;cis-trans isomerase activity;1.32271565693999e-05!GO:0031324;negative regulation of cellular metabolic process;1.44769911655959e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.51794801043279e-05!GO:0016310;phosphorylation;1.51794801043279e-05!GO:0016563;transcription activator activity;1.57450791829064e-05!GO:0016567;protein ubiquitination;1.72291125015333e-05!GO:0007010;cytoskeleton organization and biogenesis;1.78829499127181e-05!GO:0005667;transcription factor complex;1.90984348149427e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.07143938443682e-05!GO:0007243;protein kinase cascade;2.16550949354623e-05!GO:0043623;cellular protein complex assembly;2.16869290202138e-05!GO:0031497;chromatin assembly;2.16869290202138e-05!GO:0006606;protein import into nucleus;2.24920009962602e-05!GO:0005813;centrosome;2.365285113123e-05!GO:0005762;mitochondrial large ribosomal subunit;2.40362214941174e-05!GO:0000315;organellar large ribosomal subunit;2.40362214941174e-05!GO:0030867;rough endoplasmic reticulum membrane;2.76285114847728e-05!GO:0016740;transferase activity;3.00567142055798e-05!GO:0000151;ubiquitin ligase complex;4.59434817993912e-05!GO:0008654;phospholipid biosynthetic process;4.59434817993912e-05!GO:0033116;ER-Golgi intermediate compartment membrane;4.82148249870901e-05!GO:0016568;chromatin modification;5.02118276072989e-05!GO:0005773;vacuole;5.3815928590247e-05!GO:0003724;RNA helicase activity;5.91350575595275e-05!GO:0003713;transcription coactivator activity;6.05666074120674e-05!GO:0009892;negative regulation of metabolic process;7.41947679740626e-05!GO:0005815;microtubule organizing center;8.29770933332101e-05!GO:0006612;protein targeting to membrane;9.63470109625054e-05!GO:0008361;regulation of cell size;0.000102325282608774!GO:0019899;enzyme binding;0.000104211567740714!GO:0030029;actin filament-based process;0.000104292801880905!GO:0051028;mRNA transport;0.000110787199062902!GO:0008092;cytoskeletal protein binding;0.000115716270144883!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000118446338557236!GO:0007264;small GTPase mediated signal transduction;0.000122678498938275!GO:0016779;nucleotidyltransferase activity;0.000122821011087757!GO:0043021;ribonucleoprotein binding;0.000146042089775761!GO:0005791;rough endoplasmic reticulum;0.000146042089775761!GO:0031968;organelle outer membrane;0.000151514452480849!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000157960343632989!GO:0016049;cell growth;0.000159417994175749!GO:0030133;transport vesicle;0.000162606117471303!GO:0006091;generation of precursor metabolites and energy;0.000171371397734686!GO:0051427;hormone receptor binding;0.000190400472303025!GO:0005905;coated pit;0.000199385228002614!GO:0051789;response to protein stimulus;0.000201480912854562!GO:0006986;response to unfolded protein;0.000201480912854562!GO:0005048;signal sequence binding;0.000213970058630339!GO:0005885;Arp2/3 protein complex;0.00023264298292894!GO:0019867;outer membrane;0.000244215664036778!GO:0004576;oligosaccharyl transferase activity;0.000267268592786349!GO:0008250;oligosaccharyl transferase complex;0.000290265662122685!GO:0001558;regulation of cell growth;0.00029223080722535!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000329492656473979!GO:0015980;energy derivation by oxidation of organic compounds;0.000355287950219829!GO:0000323;lytic vacuole;0.000386643347841021!GO:0005764;lysosome;0.000386643347841021!GO:0035257;nuclear hormone receptor binding;0.000389364292447358!GO:0016126;sterol biosynthetic process;0.000406568787099556!GO:0000314;organellar small ribosomal subunit;0.00041002499669397!GO:0005763;mitochondrial small ribosomal subunit;0.00041002499669397!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000428721986600082!GO:0030663;COPI coated vesicle membrane;0.000489029376187535!GO:0030126;COPI vesicle coat;0.000489029376187535!GO:0051329;interphase of mitotic cell cycle;0.000489449104128925!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000502821548425001!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000523487821052972!GO:0018196;peptidyl-asparagine modification;0.000614418248793665!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000614418248793665!GO:0001726;ruffle;0.000625524800933748!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000644311229195206!GO:0005741;mitochondrial outer membrane;0.000670592575329885!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000689333809444334!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000737284003367897!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000762729148583119!GO:0048518;positive regulation of biological process;0.000762729148583119!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000770958640161597!GO:0030659;cytoplasmic vesicle membrane;0.000805688160485394!GO:0051920;peroxiredoxin activity;0.000807407745356204!GO:0042802;identical protein binding;0.000824884141231628!GO:0005819;spindle;0.000864453687474025!GO:0016481;negative regulation of transcription;0.000895431446838193!GO:0048468;cell development;0.000941331902511912!GO:0008610;lipid biosynthetic process;0.000942949442004029!GO:0051325;interphase;0.000953177390986999!GO:0016044;membrane organization and biogenesis;0.000969938003897155!GO:0016363;nuclear matrix;0.00106226450570303!GO:0006891;intra-Golgi vesicle-mediated transport;0.00107954778549949!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00111012973835437!GO:0006950;response to stress;0.00125819737580659!GO:0006839;mitochondrial transport;0.00132343221924557!GO:0003899;DNA-directed RNA polymerase activity;0.00134808757942654!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0013766280407421!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00138065504772256!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00138065504772256!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00138065504772256!GO:0008186;RNA-dependent ATPase activity;0.00138065504772256!GO:0030137;COPI-coated vesicle;0.00148482930533324!GO:0003690;double-stranded DNA binding;0.00152658478724763!GO:0019843;rRNA binding;0.00154006255504098!GO:0008047;enzyme activator activity;0.00156121289664081!GO:0048500;signal recognition particle;0.00157902356945915!GO:0048471;perinuclear region of cytoplasm;0.00159221407026205!GO:0016197;endosome transport;0.00160198483513486!GO:0000075;cell cycle checkpoint;0.0016247453612564!GO:0044262;cellular carbohydrate metabolic process;0.00164440875334999!GO:0043681;protein import into mitochondrion;0.00170854207593817!GO:0065007;biological regulation;0.00177592920589493!GO:0007050;cell cycle arrest;0.0018503861596856!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00185313416739817!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00185313416739817!GO:0007051;spindle organization and biogenesis;0.00190675804814995!GO:0030658;transport vesicle membrane;0.00190999628604318!GO:0044433;cytoplasmic vesicle part;0.00198739499259867!GO:0006261;DNA-dependent DNA replication;0.00199281588001326!GO:0046474;glycerophospholipid biosynthetic process;0.00206991924906936!GO:0065009;regulation of a molecular function;0.0021362618560973!GO:0030027;lamellipodium;0.00217514886101458!GO:0009165;nucleotide biosynthetic process;0.0022721381169109!GO:0006626;protein targeting to mitochondrion;0.00233797841955213!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00243408589430278!GO:0030134;ER to Golgi transport vesicle;0.00246291594427905!GO:0030176;integral to endoplasmic reticulum membrane;0.00265176553272545!GO:0009967;positive regulation of signal transduction;0.00273593051451885!GO:0008632;apoptotic program;0.00285728192921746!GO:0006414;translational elongation;0.00301797658585936!GO:0015631;tubulin binding;0.00305378607315853!GO:0031072;heat shock protein binding;0.0030567167315258!GO:0030127;COPII vesicle coat;0.00306493590258622!GO:0012507;ER to Golgi transport vesicle membrane;0.00306493590258622!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00307083798611168!GO:0031901;early endosome membrane;0.00307094238163159!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00308493411264818!GO:0003729;mRNA binding;0.00308493411264818!GO:0000786;nucleosome;0.00309182969661794!GO:0051168;nuclear export;0.00317143010433779!GO:0030132;clathrin coat of coated pit;0.00325487869535258!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00333224051543809!GO:0045047;protein targeting to ER;0.00333224051543809!GO:0006695;cholesterol biosynthetic process;0.00335937199767738!GO:0008243;plasminogen activator activity;0.00349220865803193!GO:0012506;vesicle membrane;0.00361447438861187!GO:0004004;ATP-dependent RNA helicase activity;0.00363819665444185!GO:0008312;7S RNA binding;0.00402297861338328!GO:0000059;protein import into nucleus, docking;0.00402921761079164!GO:0006892;post-Golgi vesicle-mediated transport;0.00419613136384934!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00427355195113295!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00447814070779903!GO:0045045;secretory pathway;0.00468844695127465!GO:0046489;phosphoinositide biosynthetic process;0.00469487179585151!GO:0030660;Golgi-associated vesicle membrane;0.00497580970657235!GO:0008139;nuclear localization sequence binding;0.00504026662803706!GO:0051252;regulation of RNA metabolic process;0.00512039355932668!GO:0031418;L-ascorbic acid binding;0.00519219518723872!GO:0031543;peptidyl-proline dioxygenase activity;0.00523693720989313!GO:0006979;response to oxidative stress;0.0053859913393495!GO:0006740;NADPH regeneration;0.00539124205644759!GO:0006098;pentose-phosphate shunt;0.00539124205644759!GO:0017166;vinculin binding;0.00562931021347851!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00562931021347851!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00562931021347851!GO:0005684;U2-dependent spliceosome;0.00562931021347851!GO:0043284;biopolymer biosynthetic process;0.00572285532406398!GO:0006383;transcription from RNA polymerase III promoter;0.00573303297726204!GO:0005874;microtubule;0.00596518607102863!GO:0048487;beta-tubulin binding;0.0059974257387299!GO:0030118;clathrin coat;0.00610107626207148!GO:0035258;steroid hormone receptor binding;0.00620718824873582!GO:0046467;membrane lipid biosynthetic process;0.00626197273187519!GO:0000776;kinetochore;0.0062829211688329!GO:0008180;signalosome;0.00632115172897526!GO:0007006;mitochondrial membrane organization and biogenesis;0.00690384513970172!GO:0046483;heterocycle metabolic process;0.00715022245152911!GO:0005096;GTPase activator activity;0.00742814169015865!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00809722008171593!GO:0015399;primary active transmembrane transporter activity;0.00809722008171593!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00818489465776178!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0083973835608793!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00845284434496885!GO:0006509;membrane protein ectodomain proteolysis;0.0085275706153782!GO:0033619;membrane protein proteolysis;0.0085275706153782!GO:0045893;positive regulation of transcription, DNA-dependent;0.00874300007744075!GO:0015992;proton transport;0.00884598156589307!GO:0006650;glycerophospholipid metabolic process;0.00884744732098167!GO:0030521;androgen receptor signaling pathway;0.0089166238875803!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00904349266908085!GO:0006818;hydrogen transport;0.00908442630153437!GO:0040008;regulation of growth;0.00915048595277416!GO:0045941;positive regulation of transcription;0.00916595795770553!GO:0019798;procollagen-proline dioxygenase activity;0.00929301580193715!GO:0016272;prefoldin complex;0.00934227618314781!GO:0006302;double-strand break repair;0.00948086968074884!GO:0022406;membrane docking;0.00974986676101909!GO:0048278;vesicle docking;0.00974986676101909!GO:0016860;intramolecular oxidoreductase activity;0.0100950829349449!GO:0005869;dynactin complex;0.0103456183581137!GO:0008094;DNA-dependent ATPase activity;0.0108301696479579!GO:0000339;RNA cap binding;0.0108963450866143!GO:0006595;polyamine metabolic process;0.010918055710651!GO:0005862;muscle thin filament tropomyosin;0.0112941979271313!GO:0000082;G1/S transition of mitotic cell cycle;0.0113962570896832!GO:0003756;protein disulfide isomerase activity;0.0114755189809465!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0114755189809465!GO:0003684;damaged DNA binding;0.011566007157843!GO:0043022;ribosome binding;0.0116718963525024!GO:0005657;replication fork;0.0118236244981914!GO:0000775;chromosome, pericentric region;0.0119427083043998!GO:0030880;RNA polymerase complex;0.0119427083043998!GO:0033673;negative regulation of kinase activity;0.0119427083043998!GO:0006469;negative regulation of protein kinase activity;0.0119427083043998!GO:0044452;nucleolar part;0.0128934573218628!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0130082252088462!GO:0005637;nuclear inner membrane;0.0130559709110887!GO:0007030;Golgi organization and biogenesis;0.013103727935308!GO:0051087;chaperone binding;0.0131262710834088!GO:0003678;DNA helicase activity;0.0135590386527371!GO:0003779;actin binding;0.0136456977664542!GO:0006904;vesicle docking during exocytosis;0.0140873860143914!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0142124219221852!GO:0015002;heme-copper terminal oxidase activity;0.0142124219221852!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0142124219221852!GO:0004129;cytochrome-c oxidase activity;0.0142124219221852!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0143328618647706!GO:0003711;transcription elongation regulator activity;0.0144847064204169!GO:0051348;negative regulation of transferase activity;0.014753391853192!GO:0006007;glucose catabolic process;0.0147935931736386!GO:0007093;mitotic cell cycle checkpoint;0.014945040616548!GO:0005832;chaperonin-containing T-complex;0.0151900082196622!GO:0048144;fibroblast proliferation;0.0152389525314289!GO:0048145;regulation of fibroblast proliferation;0.0152389525314289!GO:0032984;macromolecular complex disassembly;0.0156267158420298!GO:0051101;regulation of DNA binding;0.016245437859878!GO:0031529;ruffle organization and biogenesis;0.0163702031381904!GO:0019222;regulation of metabolic process;0.0167224362581558!GO:0030125;clathrin vesicle coat;0.0171720227868955!GO:0030665;clathrin coated vesicle membrane;0.0171720227868955!GO:0030384;phosphoinositide metabolic process;0.0174911989719367!GO:0051270;regulation of cell motility;0.0177955761805803!GO:0006402;mRNA catabolic process;0.0180568504863679!GO:0051052;regulation of DNA metabolic process;0.0181426413691282!GO:0008033;tRNA processing;0.0191886768362818!GO:0043488;regulation of mRNA stability;0.0193113582209119!GO:0043487;regulation of RNA stability;0.0193113582209119!GO:0051128;regulation of cellular component organization and biogenesis;0.0193588360082631!GO:0003746;translation elongation factor activity;0.0194857860420347!GO:0004674;protein serine/threonine kinase activity;0.0196762035004196!GO:0007242;intracellular signaling cascade;0.0196762035004196!GO:0005801;cis-Golgi network;0.0198938650107366!GO:0008234;cysteine-type peptidase activity;0.0200482878222306!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0203286598191277!GO:0000049;tRNA binding;0.0205984393306617!GO:0031902;late endosome membrane;0.0205984393306617!GO:0031625;ubiquitin protein ligase binding;0.0207540475786306!GO:0030119;AP-type membrane coat adaptor complex;0.0210230941587729!GO:0007040;lysosome organization and biogenesis;0.0214440245151105!GO:0004177;aminopeptidase activity;0.0216219494001336!GO:0006497;protein amino acid lipidation;0.0216219494001336!GO:0048146;positive regulation of fibroblast proliferation;0.0216484302683698!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0219679268008379!GO:0000428;DNA-directed RNA polymerase complex;0.0219679268008379!GO:0051540;metal cluster binding;0.0221260876968642!GO:0051536;iron-sulfur cluster binding;0.0221260876968642!GO:0006352;transcription initiation;0.0229201391404374!GO:0006739;NADP metabolic process;0.0232318688660846!GO:0050681;androgen receptor binding;0.0235125451159241!GO:0001516;prostaglandin biosynthetic process;0.0235125451159241!GO:0046457;prostanoid biosynthetic process;0.0235125451159241!GO:0030041;actin filament polymerization;0.0236099928039448!GO:0006611;protein export from nucleus;0.0237267395610287!GO:0007052;mitotic spindle organization and biogenesis;0.0242028375692735!GO:0045792;negative regulation of cell size;0.0244699026421474!GO:0000792;heterochromatin;0.0246572218653491!GO:0051287;NAD binding;0.0249748574100718!GO:0022890;inorganic cation transmembrane transporter activity;0.0252664024625493!GO:0043241;protein complex disassembly;0.0252664024625493!GO:0030308;negative regulation of cell growth;0.0254140582947371!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.025669501792756!GO:0000209;protein polyubiquitination;0.0265998047983945!GO:0050790;regulation of catalytic activity;0.0266846781377881!GO:0016408;C-acyltransferase activity;0.0267634041981742!GO:0043065;positive regulation of apoptosis;0.0268232571850628!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0270423076132269!GO:0030032;lamellipodium biogenesis;0.0270502026840961!GO:0032940;secretion by cell;0.0273704231191055!GO:0016584;nucleosome positioning;0.0274062550753896!GO:0006778;porphyrin metabolic process;0.0278104670102849!GO:0033013;tetrapyrrole metabolic process;0.0278104670102849!GO:0000096;sulfur amino acid metabolic process;0.0285588782380304!GO:0030433;ER-associated protein catabolic process;0.0287673864333734!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0287673864333734!GO:0004287;prolyl oligopeptidase activity;0.0287903069245977!GO:0008154;actin polymerization and/or depolymerization;0.0287940238892996!GO:0045892;negative regulation of transcription, DNA-dependent;0.0287940238892996!GO:0043068;positive regulation of programmed cell death;0.0289481302617344!GO:0006417;regulation of translation;0.0289658487451745!GO:0008283;cell proliferation;0.0289658487451745!GO:0030518;steroid hormone receptor signaling pathway;0.0289658487451745!GO:0046519;sphingoid metabolic process;0.0293068566799223!GO:0007265;Ras protein signal transduction;0.0293647796178713!GO:0016251;general RNA polymerase II transcription factor activity;0.0296891058504024!GO:0007033;vacuole organization and biogenesis;0.0302481501609267!GO:0003682;chromatin binding;0.0306283563259776!GO:0009116;nucleoside metabolic process;0.0307389571075739!GO:0009112;nucleobase metabolic process;0.0311227896583697!GO:0007021;tubulin folding;0.0314162555500329!GO:0031371;ubiquitin conjugating enzyme complex;0.0319738620351618!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0322239000092731!GO:0030833;regulation of actin filament polymerization;0.032877024032311!GO:0009225;nucleotide-sugar metabolic process;0.0331024812233976!GO:0006289;nucleotide-excision repair;0.033184499226575!GO:0045936;negative regulation of phosphate metabolic process;0.033184499226575!GO:0006607;NLS-bearing substrate import into nucleus;0.0336960105625582!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0336960105625582!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0336960105625582!GO:0050811;GABA receptor binding;0.0339207027183613!GO:0007088;regulation of mitosis;0.0340719676538157!GO:0051272;positive regulation of cell motility;0.0347747886026934!GO:0040017;positive regulation of locomotion;0.0347747886026934!GO:0006354;RNA elongation;0.0347747886026934!GO:0030131;clathrin adaptor complex;0.0347886073174244!GO:0031301;integral to organelle membrane;0.0348248679566149!GO:0005581;collagen;0.0349040067141872!GO:0043624;cellular protein complex disassembly;0.0349672729374951!GO:0043492;ATPase activity, coupled to movement of substances;0.0350293742931479!GO:0006672;ceramide metabolic process;0.0353186400322117!GO:0031124;mRNA 3'-end processing;0.0356868579810874!GO:0006769;nicotinamide metabolic process;0.036201608405997!GO:0022411;cellular component disassembly;0.036201608405997!GO:0007034;vacuolar transport;0.0366006601893644!GO:0008022;protein C-terminus binding;0.0372813466091118!GO:0006401;RNA catabolic process;0.0380839871862702!GO:0005100;Rho GTPase activator activity;0.038147484493545!GO:0006720;isoprenoid metabolic process;0.0387490290337378!GO:0042168;heme metabolic process;0.0387490290337378!GO:0006310;DNA recombination;0.039459837830715!GO:0051539;4 iron, 4 sulfur cluster binding;0.03960648164321!GO:0005784;translocon complex;0.0404809495834366!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0407709511902205!GO:0005938;cell cortex;0.0416463898492552!GO:0022408;negative regulation of cell-cell adhesion;0.0417829693421714!GO:0030145;manganese ion binding;0.0422827409643725!GO:0006506;GPI anchor biosynthetic process;0.0425109323844077!GO:0004003;ATP-dependent DNA helicase activity;0.04287497744798!GO:0046426;negative regulation of JAK-STAT cascade;0.04287497744798!GO:0008538;proteasome activator activity;0.04287497744798!GO:0006144;purine base metabolic process;0.0432260855999723!GO:0030911;TPR domain binding;0.0433383498647622!GO:0005099;Ras GTPase activator activity;0.0439900704675922!GO:0007017;microtubule-based process;0.0443015775206863!GO:0030508;thiol-disulfide exchange intermediate activity;0.0444067435447178!GO:0040011;locomotion;0.0446539931571406!GO:0005586;collagen type III;0.0451229012314985!GO:0006376;mRNA splice site selection;0.0451564197333566!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0451564197333566!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0456212015062427!GO:0006984;ER-nuclear signaling pathway;0.0461349587193562!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0464525964092634!GO:0032508;DNA duplex unwinding;0.0475092024673343!GO:0032392;DNA geometric change;0.0475092024673343!GO:0006505;GPI anchor metabolic process;0.0475575849136959!GO:0035035;histone acetyltransferase binding;0.0486757526227276!GO:0030100;regulation of endocytosis;0.0486965216292262!GO:0005521;lamin binding;0.0495565569762133!GO:0015036;disulfide oxidoreductase activity;0.0499844976563069
 +
|sample_id=11760
 +
|sample_note=
 +
|sample_sex=
 +
|sample_species=Human (Homo sapiens)
 +
|sample_strain=
 +
|sample_tissue=ovary
 +
|top_motifs=HSF1,2:1.71757376762;NKX3-1:1.69233020144;TAL1_TCF{3,4,12}:1.48727960559;HBP1_HMGB_SSRP1_UBTF:1.18496528004;SRF:1.16619287965;ALX4:1.1647912356;ZNF238:1.15951868447;GZF1:1.15237947499;HIF1A:1.14587292974;TEF:1.12859168147;CDC5L:0.975559385393;ZNF384:0.952785496494;HOX{A5,B5}:0.941997575631;PAX8:0.93187770944;EN1,2:0.904140985288;NFATC1..3:0.898073174627;TLX2:0.882019138491;CRX:0.866334155035;PAX4:0.846486426058;MYBL2:0.783031005036;TEAD1:0.77606773588;NFIX:0.764317284392;IKZF1:0.732938168419;XCPE1{core}:0.719074571338;TLX1..3_NFIC{dimer}:0.705119085993;POU3F1..4:0.693194737774;ATF6:0.660194746968;UFEwm:0.656228395233;ONECUT1,2:0.654439715765;TBP:0.634856587489;NFE2L2:0.634289412675;PRDM1:0.625966736823;GLI1..3:0.615541309368;GTF2A1,2:0.611724320662;AIRE:0.609756941075;EVI1:0.587805145019;NKX2-2,8:0.562927156582;TFCP2:0.546807733477;MZF1:0.53725897708;HMGA1,2:0.532868475359;RFX1:0.523753896649;GTF2I:0.513206902337;DBP:0.509291402064;FOX{I1,J2}:0.467406972913;SMAD1..7,9:0.464508880014;PAX1,9:0.464083842535;BACH2:0.456221169048;ALX1:0.434104241478;TBX4,5:0.428313560518;TP53:0.417376491217;HLF:0.411154564826;NANOG{mouse}:0.409713069356;POU6F1:0.405353078379;FOS_FOS{B,L1}_JUN{B,D}:0.402474712108;EBF1:0.401626141221;MAZ:0.398594925819;GFI1B:0.396456490567;AHR_ARNT_ARNT2:0.3921272907;HOX{A4,D4}:0.374363576451;ELK1,4_GABP{A,B1}:0.370316692775;ZIC1..3:0.369030735635;POU5F1:0.352289186895;NKX2-1,4:0.344278695622;SOX17:0.33546377283;ZBTB6:0.313628585133;KLF4:0.306307900084;LEF1_TCF7_TCF7L1,2:0.291490079213;POU2F1..3:0.280018586662;AR:0.278117207593;RXR{A,B,G}:0.268121832141;SPZ1:0.264765443853;XBP1:0.247292387992;FOXM1:0.229336767018;MTE{core}:0.22617557603;JUN:0.221888136084;RXRA_VDR{dimer}:0.215221965977;RUNX1..3:0.205387623152;PAX3,7:0.20261122189;NR3C1:0.198500023098;PPARG:0.196250066755;EGR1..3:0.195788989416;NR6A1:0.171725472659;NFE2:0.163165483709;PATZ1:0.159758277102;NKX3-2:0.158112327851;ATF2:0.157685128847;TFDP1:0.151730674602;ARID5B:0.150338600775;MAFB:0.139438621066;TFAP2B:0.130881814375;ZNF148:0.0905953409919;HNF1A:0.0887202117125;NFE2L1:0.088090504979;NHLH1,2:0.0802073512877;TFAP2{A,C}:0.0745149903449;GCM1,2:0.0735684751212;NFKB1_REL_RELA:0.0691797499046;GFI1:0.0681303758913;FOSL2:0.0674407733795;HIC1:0.0665126063176;ZBTB16:0.0513594275154;NKX6-1,2:0.0307804276935;PAX5:0.0241705359388;PAX2:0.0144914689293;HOXA9_MEIS1:0.00877907091124;SOX2:0.00462560441695;E2F1..5:-0.00161066407798;ZNF143:-0.0058889410447;HES1:-0.00624036099148;STAT1,3:-0.016281670644;PBX1:-0.0167109100804;ELF1,2,4:-0.0170826381505;ZFP161:-0.0203576078915;MED-1{core}:-0.0285779382802;LHX3,4:-0.0323642457473;GATA4:-0.0349696874127;SP1:-0.0431293998396;NRF1:-0.0432752856424;IRF1,2:-0.0610023029757;MYFfamily:-0.0715604942396;CDX1,2,4:-0.0768140220827;NFIL3:-0.0903378791549;ESR1:-0.0950076496527;PRRX1,2:-0.118851806213;SOX{8,9,10}:-0.139790743492;CREB1:-0.142192866659;RREB1:-0.146704022625;TFAP4:-0.148636538104;MTF1:-0.155749447923;EP300:-0.175910702036;STAT2,4,6:-0.176306550359;FOXL1:-0.17696940316;GATA6:-0.190220786555;STAT5{A,B}:-0.193202622047;FOXQ1:-0.193623998916;HMX1:-0.19502344928;REST:-0.202957870472;MEF2{A,B,C,D}:-0.2081592777;SOX5:-0.208339016416;POU1F1:-0.20865787857;DMAP1_NCOR{1,2}_SMARC:-0.20887731986;ADNP_IRX_SIX_ZHX:-0.212010882243;HAND1,2:-0.222360084265;HNF4A_NR2F1,2:-0.230563825235;NFY{A,B,C}:-0.234403195011;ETS1,2:-0.247154466774;MYB:-0.283805141675;IRF7:-0.302488483557;FOXN1:-0.305361778221;ATF5_CREB3:-0.345320886733;ZNF423:-0.356431010111;FOXD3:-0.361773376716;SPI1:-0.370722087557;YY1:-0.372039074751;CEBPA,B_DDIT3:-0.383261634721;OCT4_SOX2{dimer}:-0.387698756736;bHLH_family:-0.393797567738;PAX6:-0.40183064737;RFX2..5_RFXANK_RFXAP:-0.415738808287;TOPORS:-0.421432423366;SREBF1,2:-0.429029296638;BPTF:-0.448311920784;FOXP3:-0.490644811872;ATF4:-0.50079050347;NR1H4:-0.511577696899;SPIB:-0.540042844867;FOXP1:-0.544426153512;FOXA2:-0.549078917335;IKZF2:-0.568261815288;ZEB1:-0.581374489536;FOXO1,3,4:-0.5878086759;NR5A1,2:-0.598894130885;FOX{D1,D2}:-0.613355993979;LMO2:-0.647360133663;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.6739042192;TGIF1:-0.675301279653;NKX2-3_NKX2-5:-0.677299467238;BREu{core}:-0.687374754382;CUX2:-0.72885832234;SNAI1..3:-0.733682910347;RBPJ:-0.755478833353;NANOG:-0.772804320728;RORA:-0.799164724683;PITX1..3:-0.863673501573;MYOD1:-0.883200015426;ESRRA:-0.915600263994;T:-0.947145784093;VSX1,2:-0.949980474846;HOX{A6,A7,B6,B7}:-0.996231477996;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.04780851997;FOX{F1,F2,J1}:-1.14215579708;PDX1:-1.33493430522
 +
|xref=
 +
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11760-123H5;search_select_hide=table117:FF:11760-123H5
 
}}
 
}}

Latest revision as of 09:18, 4 June 2020

Name:mesenchymal precursor cell - ovarian cancer left ovary, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12376
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueovary
dev stageNA
sexNA
ageNA
cell typemesenchymal precursor cell
cell lineNA
companyNA
collaborationClaudio Schneider LNCIB
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005216
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12376 CAGE DRX008557 DRR009429
Accession ID Hg19

Library idBAMCTSS
CNhs12376 DRZ000854 DRZ002239
Accession ID Hg38

Library idBAMCTSS
CNhs12376 DRZ012204 DRZ013589
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.01
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.0985
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.21
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19--0.0782
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle--0.0116
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.407
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed--0.0311
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte--0.0148
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.112
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.117
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.117
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0627
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth--0.0366
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.021
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.0169
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.117
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.117
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.319
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.477
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.542
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.407
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.542
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs12376

Jaspar motif P-value
MA0002.2 0.165
MA0003.1 0.637
MA0004.1 0.0841
MA0006.1 0.379
MA0007.1 0.978
MA0009.1 0.185
MA0014.1 0.89
MA0017.1 0.101
MA0018.2 0.0182
MA0019.1 0.196
MA0024.1 0.143
MA0025.1 0.625
MA0027.1 0.673
MA0028.1 0.242
MA0029.1 0.564
MA0030.1 0.214
MA0031.1 0.108
MA0035.2 0.103
MA0038.1 0.394
MA0039.2 0.0347
MA0040.1 0.642
MA0041.1 0.515
MA0042.1 0.982
MA0043.1 0.234
MA0046.1 0.549
MA0047.2 0.721
MA0048.1 0.118
MA0050.1 0.118
MA0051.1 0.461
MA0052.1 0.05
MA0055.1 0.167
MA0057.1 0.97
MA0058.1 0.0182
MA0059.1 0.244
MA0060.1 0.0385
MA0061.1 0.665
MA0062.2 0.246
MA0065.2 0.00248
MA0066.1 0.129
MA0067.1 0.0175
MA0068.1 0.122
MA0069.1 0.612
MA0070.1 0.784
MA0071.1 0.104
MA0072.1 0.244
MA0073.1 0.926
MA0074.1 0.989
MA0076.1 0.34
MA0077.1 0.788
MA0078.1 0.814
MA0079.2 0.428
MA0080.2 7.50352e-8
MA0081.1 0.0348
MA0083.1 1.73577e-7
MA0084.1 0.153
MA0087.1 0.587
MA0088.1 0.421
MA0090.1 0.00274
MA0091.1 0.761
MA0092.1 0.952
MA0093.1 0.193
MA0099.2 3.67652e-9
MA0100.1 0.701
MA0101.1 0.166
MA0102.2 0.929
MA0103.1 5.12456e-4
MA0104.2 0.00328
MA0105.1 0.951
MA0106.1 0.235
MA0107.1 0.092
MA0108.2 3.2948e-5
MA0111.1 0.19
MA0112.2 0.103
MA0113.1 0.873
MA0114.1 0.0184
MA0115.1 0.0333
MA0116.1 0.0274
MA0117.1 0.729
MA0119.1 0.978
MA0122.1 0.214
MA0124.1 0.391
MA0125.1 0.254
MA0131.1 0.962
MA0135.1 0.143
MA0136.1 2.64004e-6
MA0137.2 0.982
MA0138.2 0.156
MA0139.1 0.313
MA0140.1 0.259
MA0141.1 0.031
MA0142.1 0.595
MA0143.1 0.717
MA0144.1 0.857
MA0145.1 0.828
MA0146.1 0.136
MA0147.1 0.0144
MA0148.1 0.926
MA0149.1 0.428
MA0150.1 0.282
MA0152.1 0.0041
MA0153.1 0.608
MA0154.1 0.209
MA0155.1 0.358
MA0156.1 0.0888
MA0157.1 0.106
MA0159.1 0.0753
MA0160.1 0.00936
MA0162.1 0.289
MA0163.1 0.117
MA0164.1 0.992
MA0258.1 0.014
MA0259.1 0.435



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs12376

Novel motif P-value
1 0.173
10 0.341
100 0.443
101 0.936
102 0.142
103 0.895
104 0.773
105 0.335
106 0.959
107 0.364
108 0.674
109 0.158
11 0.478
110 0.52
111 0.0621
112 0.429
113 0.0177
114 0.327
115 0.751
116 0.511
117 0.919
118 0.307
119 0.407
12 0.327
120 0.214
121 0.757
122 0.0499
123 8.68673e-4
124 0.328
125 0.798
126 0.546
127 0.877
128 0.918
129 0.647
13 0.23
130 0.619
131 0.072
132 0.856
133 0.706
134 0.463
135 0.826
136 0.937
137 0.876
138 0.706
139 0.748
14 0.169
140 0.401
141 0.569
142 0.991
143 0.63
144 0.747
145 0.712
146 0.599
147 0.235
148 0.174
149 0.497
15 0.492
150 0.254
151 0.157
152 0.177
153 0.505
154 0.801
155 0.00118
156 0.264
157 0.145
158 0.00284
159 0.135
16 0.314
160 0.581
161 0.353
162 0.605
163 0.488
164 0.761
165 0.981
166 0.427
167 0.209
168 0.873
169 0.625
17 0.734
18 0.619
19 0.936
2 0.743
20 0.609
21 0.331
22 0.767
23 0.347
24 0.808
25 0.0802
26 0.538
27 0.719
28 0.49
29 0.992
3 0.717
30 0.472
31 0.599
32 0.0019
33 0.935
34 0.926
35 0.668
36 0.0365
37 0.837
38 0.221
39 0.424
4 0.173
40 0.101
41 0.232
42 0.638
43 0.269
44 0.659
45 0.713
46 0.45
47 0.205
48 0.485
49 0.00693
5 0.74
50 0.796
51 0.476
52 0.984
53 0.105
54 0.591
55 0.287
56 0.517
57 0.302
58 0.0693
59 0.407
6 0.209
60 0.513
61 0.195
62 0.209
63 0.534
64 0.408
65 0.546
66 0.825
67 0.986
68 0.756
69 0.0649
7 0.0693
70 0.0889
71 0.389
72 0.405
73 0.584
74 0.1
75 0.803
76 0.658
77 0.625
78 0.0194
79 0.094
8 0.603
80 0.553
81 0.254
82 0.176
83 0.954
84 0.831
85 0.935
86 0.994
87 0.504
88 0.977
89 0.666
9 0.666
90 0.997
91 0.748
92 0.755
93 0.625
94 0.655
95 0.614
96 0.482
97 0.244
98 0.00673
99 0.0323



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs12376


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
193 (reproductive organ cancer)
2394 (ovarian cancer)
120 (female reproductive organ cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000992 (female gonad)
0000991 (gonad)
0002384 (connective tissue)
0003134 (female reproductive organ)
0000479 (tissue)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0002119 (left ovary)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000272 (human ovarian cancer mesenchymal precursor cell sample)
0000273 (human mesenchymal precursor cell- ovarian cancer-left ovary sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

CL:0000134 (mesenchymal cell)