FF:11797-124C6: Difference between revisions

Latest revision as of 18:21, 4 June 2020

Name:	CD4+CD25+CD45RA- memory regulatory T cells, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs13206
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	23
cell type	T cell
cell line	NA
company	NA
collaboration	Michael Rehli (University of Regensberg)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	23
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005355

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13206		CAGE		DRX008185		DRR009057

Accession ID Hg19

Library id		BAM		CTSS
CNhs13206		DRZ000482		DRZ001867

Accession ID Hg38

Library id		BAM		CTSS
CNhs13206		DRZ011832		DRZ013217

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0.974
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.168
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.157
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.184
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.367
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0.276
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.159
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.276
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.675
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.354
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.83
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.347
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.0869
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0484
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.159
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.407
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0.613
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.563
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.0875
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.557
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.636
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.269
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.678
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.861
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.636
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.523
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.484
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.488
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.725
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.159
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.909
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.221
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0.0869
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.0869
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13206

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	2.29387e-6
MA0003.1	MA0003.1	0.878
MA0004.1	MA0004.1	0.836
MA0006.1	MA0006.1	0.262
MA0007.1	MA0007.1	0.896
MA0009.1	MA0009.1	0.15
MA0014.1	MA0014.1	0.888
MA0017.1	MA0017.1	0.32
MA0018.2	MA0018.2	1.19082e-5
MA0019.1	MA0019.1	0.928
MA0024.1	MA0024.1	0.655
MA0025.1	MA0025.1	0.368
MA0027.1	MA0027.1	0.874
MA0028.1	MA0028.1	6.5754e-5
MA0029.1	MA0029.1	0.266
MA0030.1	MA0030.1	0.0146
MA0031.1	MA0031.1	5.38778e-4
MA0035.2	MA0035.2	0.0675
MA0038.1	MA0038.1	0.103
MA0039.2	MA0039.2	0.921
MA0040.1	MA0040.1	0.953
MA0041.1	MA0041.1	0.383
MA0042.1	MA0042.1	0.892
MA0043.1	MA0043.1	0.14
MA0046.1	MA0046.1	0.232
MA0047.2	MA0047.2	0.0707
MA0048.1	MA0048.1	0.746
MA0050.1	MA0050.1	3.74452e-8
MA0051.1	MA0051.1	0.00277
MA0052.1	MA0052.1	0.00466
MA0055.1	MA0055.1	0.942
MA0057.1	MA0057.1	0.669
MA0058.1	MA0058.1	0.705
MA0059.1	MA0059.1	0.556
MA0060.1	MA0060.1	0.16
MA0061.1	MA0061.1	0.0112
MA0062.2	MA0062.2	4.69354e-15
MA0065.2	MA0065.2	0.132
MA0066.1	MA0066.1	0.241
MA0067.1	MA0067.1	0.0239
MA0068.1	MA0068.1	0.719
MA0069.1	MA0069.1	0.72
MA0070.1	MA0070.1	0.641
MA0071.1	MA0071.1	0.591
MA0072.1	MA0072.1	0.0724
MA0073.1	MA0073.1	0.904
MA0074.1	MA0074.1	0.429
MA0076.1	MA0076.1	5.9273e-7
MA0077.1	MA0077.1	0.0273
MA0078.1	MA0078.1	0.655
MA0079.2	MA0079.2	0.353
MA0080.2	MA0080.2	4.29838e-11
MA0081.1	MA0081.1	0.0206
MA0083.1	MA0083.1	0.04
MA0084.1	MA0084.1	0.401
MA0087.1	MA0087.1	0.563
MA0088.1	MA0088.1	0.279
MA0090.1	MA0090.1	1.43113e-4
MA0091.1	MA0091.1	0.934
MA0092.1	MA0092.1	0.978
MA0093.1	MA0093.1	0.946
MA0099.2	MA0099.2	0.00646
MA0100.1	MA0100.1	0.556
MA0101.1	MA0101.1	0.694
MA0102.2	MA0102.2	0.538
MA0103.1	MA0103.1	0.112
MA0104.2	MA0104.2	0.238
MA0105.1	MA0105.1	2.37556e-6
MA0106.1	MA0106.1	0.209
MA0107.1	MA0107.1	0.962
MA0108.2	MA0108.2	1.03349e-8
MA0111.1	MA0111.1	0.169
MA0112.2	MA0112.2	0.298
MA0113.1	MA0113.1	0.801
MA0114.1	MA0114.1	0.53
MA0115.1	MA0115.1	0.619
MA0116.1	MA0116.1	1.69905e-4
MA0117.1	MA0117.1	0.114
MA0119.1	MA0119.1	0.536
MA0122.1	MA0122.1	0.578
MA0124.1	MA0124.1	0.401
MA0125.1	MA0125.1	0.172
MA0131.1	MA0131.1	0.17
MA0135.1	MA0135.1	0.414
MA0136.1	MA0136.1	8.09804e-22
MA0137.2	MA0137.2	0.842
MA0138.2	MA0138.2	0.317
MA0139.1	MA0139.1	0.027
MA0140.1	MA0140.1	0.0532
MA0141.1	MA0141.1	0.76
MA0142.1	MA0142.1	0.263
MA0143.1	MA0143.1	0.493
MA0144.1	MA0144.1	0.981
MA0145.1	MA0145.1	0.308
MA0146.1	MA0146.1	0.638
MA0147.1	MA0147.1	0.207
MA0148.1	MA0148.1	0.363
MA0149.1	MA0149.1	0.0899
MA0150.1	MA0150.1	0.975
MA0152.1	MA0152.1	0.0135
MA0153.1	MA0153.1	0.119
MA0154.1	MA0154.1	0.0378
MA0155.1	MA0155.1	0.364
MA0156.1	MA0156.1	1.09838e-16
MA0157.1	MA0157.1	5.76995e-4
MA0159.1	MA0159.1	0.295
MA0160.1	MA0160.1	0.748
MA0162.1	MA0162.1	0.933
MA0163.1	MA0163.1	1.12192e-7
MA0164.1	MA0164.1	0.466
MA0258.1	MA0258.1	0.275
MA0259.1	MA0259.1	0.316

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13206

Novel motif	Logo	P-value
1	1	0.279
10	10	0.0112
100	100	0.684
101	101	0.203
102	102	0.746
103	103	0.328
104	104	0.813
105	105	0.286
106	106	0.344
107	107	0.0422
108	108	0.677
109	109	0.0818
11	11	0.0892
110	110	0.683
111	111	0.637
112	112	0.477
113	113	0.358
114	114	0.259
115	115	0.44
116	116	0.548
117	117	0.00275
118	118	0.284
119	119	0.713
12	12	0.842
120	120	0.588
121	121	0.822
122	122	0.706
123	123	0.0015
124	124	0.293
125	125	0.835
126	126	0.553
127	127	0.807
128	128	0.99
129	129	0.794
13	13	0.511
130	130	0.372
131	131	0.861
132	132	0.284
133	133	0.992
134	134	0.9
135	135	0.885
136	136	0.8
137	137	0.0594
138	138	0.313
139	139	0.0908
14	14	0.484
140	140	0.124
141	141	0.439
142	142	0.535
143	143	0.00171
144	144	0.927
145	145	0.605
146	146	0.413
147	147	0.0576
148	148	0.0485
149	149	0.69
15	15	0.107
150	150	0.637
151	151	0.596
152	152	0.555
153	153	0.751
154	154	0.477
155	155	0.00679
156	156	0.49
157	157	0.186
158	158	0.0437
159	159	0.17
16	16	0.836
160	160	0.697
161	161	0.896
162	162	0.0289
163	163	0.625
164	164	0.0533
165	165	0.586
166	166	0.461
167	167	0.161
168	168	0.752
169	169	0.852
17	17	0.938
18	18	0.806
19	19	0.228
2	2	0.639
20	20	0.456
21	21	0.672
22	22	0.584
23	23	0.552
24	24	0.765
25	25	0.056
26	26	0.312
27	27	0.42
28	28	0.582
29	29	0.00597
3	3	0.112
30	30	0.122
31	31	0.808
32	32	0.263
33	33	0.192
34	34	0.423
35	35	0.19
36	36	0.0273
37	37	0.18
38	38	0.918
39	39	0.41
4	4	0.94
40	40	0.534
41	41	0.175
42	42	0.116
43	43	0.333
44	44	0.505
45	45	0.354
46	46	0.26
47	47	0.0947
48	48	0.229
49	49	0.114
5	5	0.357
50	50	0.427
51	51	0.709
52	52	0.394
53	53	0.47
54	54	0.924
55	55	0.742
56	56	0.86
57	57	0.514
58	58	0.0934
59	59	0.892
6	6	0.987
60	60	0.398
61	61	0.0991
62	62	0.0823
63	63	0.899
64	64	0.406
65	65	0.953
66	66	0.792
67	67	0.775
68	68	0.642
69	69	0.643
7	7	0.214
70	70	0.0179
71	71	0.0469
72	72	0.0406
73	73	0.55
74	74	0.622
75	75	0.0188
76	76	0.154
77	77	0.105
78	78	0.171
79	79	0.685
8	8	0.967
80	80	0.0194
81	81	0.373
82	82	0.0923
83	83	0.541
84	84	0.462
85	85	0.897
86	86	0.103
87	87	0.825
88	88	0.938
89	89	0.139
9	9	0.931
90	90	0.0358
91	91	0.686
92	92	0.387
93	93	0.815
94	94	0.0998
95	95	0.0198
96	96	0.224
97	97	0.296
98	98	0.0844
99	99	4.02007e-4

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13206

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005355
+|accession_numbers=CAGE;DRX008185;DRR009057;DRZ000482;DRZ001867;DRZ011832;DRZ013217
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001
 |comment=Changed from previous label. TODO: full classification
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chrX:49121165..49121179,-!p1@FOXP3!2.40!247.67!FOXP3;;chr6:106546808..106546833,+!p3@PRDM1!1.99!119.19!PRDM1;;chr3:63953435..63953499,+!p1@ATXN7!1.88!75.54!ATXN7;;chr1:25256756..25256774,-!p1@RUNX3!1.70!89.94!RUNX3;;chr3:71355163..71355209,-!p5@FOXP1!1.70!67.79!FOXP1;;chr7:50343634..50343717,+!p2@IKZF1!1.70!49.40!IKZF1;;chr2:231090433..231090469,+!p1@SP140!1.67!45.64!SP140;;chr10:35484053..35484076,+!p1@CREM!1.66!108.11!CREM;;chr4:109087445..109087463,-!p1@LEF1!1.63!41.65!LEF1;;chr15:60884706..60884743,-!p1@RORA!1.61!195.84!RORA;;chr6:106546834..106546850,+!p4@PRDM1!1.60!38.99!PRDM1;;chrY:21906594..21906622,-!p1@KDM5D!1.59!38.33!KDM5D;;chrX:106960285..106960299,-!p1@TSC22D3!1.58!946.17!TSC22D3;;chr6:391743..391759,+!p1@IRF4!1.57!35.89!IRF4;;chr20:56195474..56195506,-!p1@ZBP1!1.55!34.34!ZBP1;;chr10:8096631..8096660,+!p1@GATA3!1.54!40.10!GATA3;;chr19:16435625..16435682,+!p1@KLF2!1.52!979.40!KLF2;;chr14:75988771..75988826,+!p1@BATF!1.51!41.87!BATF;;chr8:60031619..60031676,-!p1@TOX!1.49!63.58!TOX;;chr17:37934365..37934387,-!p2@IKZF3!1.48!29.24!IKZF3;;chr2:192015750..192015793,-!p2@STAT4!1.43!34.56!STAT4;;chr19:54041669..54041697,+!p2@ZNF331!1.43!25.70!ZNF331;;chr19:54058073..54058088,+!p1@ZNF331!1.42!25.03!ZNF331;;chr2:231090471..231090504,+!p2@SP140!1.40!23.93!SP140;;chr17:37934204..37934241,-!p3@IKZF3!1.38!23.26!IKZF3;;chr10:35416142..35416169,+!p3@CREM!1.37!57.82!CREM;;chr19:19779619..19779670,+!p1@ZNF101!1.35!59.59!ZNF101;;chr10:35484090..35484104,+!p6@CREM!1.34!20.82!CREM;;chr2:192015701..192015743,-!p1@STAT4!1.33!28.13!STAT4;;chr14:75988831..75988847,+!p2@BATF!1.33!20.38!BATF;;chr9:3525727..3525828,-!p2@RFX3!1.31!48.96!RFX3;;chr2:97202991..97203043,+!p3@ARID5A!1.29!18.61!ARID5A;;chr13:41593425..41593480,-!p1@ELF1!1.28!112.54!ELF1;;chr9:117150254..117150271,-!p1@AKNA!1.28!49.18!AKNA;;chr4:109089901..109089930,-!p3@LEF1!1.28!18.17!LEF1;;chr2:157189180..157189290,-!p1@NR4A2!1.26!88.17!NR4A2;;chr6:106546786..106546802,+!p6@PRDM1!1.26!17.28!PRDM1;;chr11:128392273..128392308,-!p2@ETS1!1.23!66.90!ETS1;;chr10:8096772..8096787,+!p2@GATA3!1.23!19.05!GATA3;;chr7:50343895..50343936,+!p5@IKZF1!1.23!15.95!IKZF1;;chr14:64970670..64970712,-!p3@ZBTB25!1.22!33.23!ZBTB25;;chr4:109088089..109088101,-!p11@LEF1!1.22!15.51!LEF1;;chr3:71542615..71542644,-!p12@FOXP1!1.21!15.29!FOXP1;;chr6:106546731..106546755,+!p5@PRDM1!1.17!13.74!PRDM1;;chr19:12902289..12902307,+!p1@JUNB!1.16!3002.89!JUNB;;chr20:50159198..50159299,-!p1@NFATC2!1.16!19.72!NFATC2;;chr20:56195525..56195556,-!p2@ZBP1!1.16!13.29!ZBP1;;chr21:36421535..36421610,-!p2@RUNX1!1.15!46.97!RUNX1;;chr11:128392085..128392232,-!p1@ETS1!1.14!422.47!ETS1;;chr4:38665769..38665801,+!p2@KLF3!1.14!114.75!KLF3;;chr5:133450365..133450444,+!p1@TCF7!1.14!58.26!TCF7;;chr11:128563948..128564003,+!p1@FLI1!1.13!148.21!FLI1;;chr4:109090075..109090095,-!p2@LEF1!1.13!12.41!LEF1;;chr16:79634595..79634620,-!p2@MAF!1.12!22.37!MAF;;chr16:79634624..79634642,-!p1@MAF!1.11!46.52!MAF;;chr19:19729477..19729542,-!p1@PBX4!1.11!25.70!PBX4;;chr4:81104895..81104920,+!p2@PRDM8!1.11!17.94!PRDM8;;chr17:38497662..38497713,+!p4@RARA!1.11!13.74!RARA;;chr2:214015343..214015366,-!p3@IKZF2!1.11!11.96!IKZF2;;chr6:12009042..12009092,+!p6@HIVEP1!1.09!14.62!HIVEP1;;chr16:88752889..88752921,-!p1@SNAI3!1.08!12.85!SNAI3;;chr7:137620650..137620677,-!p3@CREB3L2!1.06!10.41!CREB3L2;;chr6:91006518..91006570,-!p1@BACH2!1.05!23.70!BACH2;;chr10:64134120..64134183,+!p1@ZNF365!1.05!12.41!ZNF365;;chr16:79633894..79633954,-!p3@MAF!1.04!19.49!MAF;;chr17:37934280..37934299,-!p6@IKZF3!1.04!9.97!IKZF3;;chr7:50344251..50344288,+!p3@IKZF1!1.02!9.53!IKZF1;;chr4:185395633..185395651,-!p2@IRF2!1.01!14.84!IRF2;;chr4:109088940..109089037,-!p4@LEF1!1.01!9.30!LEF1;;chr7:77428066..77428132,+!p2@PHTF2!1.00!59.81!PHTF2;;chr1:45805693..45805718,+!p3@TOE1!1.00!19.72!TOE1;;chrX:106960221..106960236,-!p3@TSC22D3!0.99!24.59!TSC22D3;;chr4:109088130..109088163,-!p13@LEF1!0.99!8.86!LEF1;;chr13:41240717..41240735,-!p2@FOXO1!0.98!59.59!FOXO1;;chr10:63809077..63809089,+!p5@ARID5B!0.98!19.05!ARID5B;;chr2:214016254..214016282,-!p7@IKZF2!0.98!8.64!IKZF2;;chr2:208394817..208394834,+!p3@CREB1!0.97!34.34!CREB1;;chr9:114287433..114287513,+!p1@ZNF483!0.97!22.15!ZNF483;;chr9:102584262..102584276,+!p1@NR4A3!0.97!19.05!NR4A3;;chr12:72056800..72056834,+!p1@THAP2!0.97!11.30!THAP2;;chr3:71542651..71542683,-!p22@FOXP1!0.97!8.42!FOXP1;;chr10:35485013..35485034,+!p15@CREM!0.96!8.20!CREM;;chr2:97202480..97202499,+!p1@ARID5A!0.95!83.52!ARID5A;;chrX:106960180..106960197,-!p2@TSC22D3!0.95!31.24!TSC22D3;;chr13:74707894..74707947,-!p6@KLF12!0.95!8.86!KLF12;;chr8:60031563..60031574,-!p7@TOX!0.95!7.98!TOX;;chr3:23986824..23986848,+!p2@NR1D2!0.94!45.19!NR1D2;;chr14:64971288..64971316,-!p2@ZBTB25!0.94!24.59!ZBTB25;;chr6:91006575..91006602,-!p2@BACH2!0.94!11.52!BACH2;;chr6:106534230..106534254,+!p2@PRDM1!0.93!19.49!PRDM1;;chr5:133451294..133451310,+!p2@TCF7!0.93!7.53!TCF7;;chr7:50344289..50344323,+!p1@IKZF1!0.93!7.53!IKZF1;;chr19:49140609..49140643,-!p1@DBP!0.92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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000624;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%252c%2520donor2.CNhs13206.11797-124C6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%252c%2520donor2.CNhs13206.11797-124C6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%252c%2520donor2.CNhs13206.11797-124C6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%252c%2520donor2.CNhs13206.11797-124C6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%252c%2520donor2.CNhs13206.11797-124C6.hg38.nobarcode.ctss.bed.gz
 |id=FF:11797-124C6
 |is_a=EFO:0002091;;FF:0000002;;FF:0000210
 |is_obsolete=
+|library_id=CNhs13206
+|library_id_phase_based=2:CNhs13206
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11797
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11797
 |name=CD4+CD25+CD45RA- memory regulatory T cells, donor2
 |namespace=
@@ Line 44: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13206,LSID1004,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=124
 |rna_catalog_number=
@@ Line 59: / Line 78: @@
 |rna_weight_ug=1.231
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+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 80: / Line 100: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11797-124C6;search_select_hide=table117:FF:11797-124C6
 }}

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FF:11797-124C6: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:21, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0