FF:11875-125C3: Difference between revisions

Latest revision as of 18:25, 4 June 2020

Name:	CD14+ monocytes - treated with lipopolysaccharide, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs13533
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	male
age	51
cell type	monocyte
cell line	NA
company	NA
collaboration	Christine Wells (University of Queensland)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	D4-6
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00006012

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13533		CAGE		DRX008160		DRR009032

Accession ID Hg19

Library id		BAM		CTSS
CNhs13533		DRZ000457		DRZ001842

Accession ID Hg38

Library id		BAM		CTSS
CNhs13533		DRZ011807		DRZ013192

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0.861
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.152
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.554
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.464
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.056
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.136
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.596
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.136
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.671
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.454
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0.393
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.447
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.528
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.596
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.136
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.393
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.219
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.323
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0605
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0.323
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.736
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0.24
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.774
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.506
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.459
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.922
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.592
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.136
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.534
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.454
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0.506
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.329
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.748
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.993
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.323
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.638
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.191
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.596
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0.136
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.393
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0.454
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.635
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0.323
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.136
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.136
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.136
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.136
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13533

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.53917e-7
MA0003.1	MA0003.1	0.63
MA0004.1	MA0004.1	0.335
MA0006.1	MA0006.1	0.908
MA0007.1	MA0007.1	0.974
MA0009.1	MA0009.1	0.469
MA0014.1	MA0014.1	0.867
MA0017.1	MA0017.1	0.223
MA0018.2	MA0018.2	0.129
MA0019.1	MA0019.1	0.54
MA0024.1	MA0024.1	0.00592
MA0025.1	MA0025.1	0.00155
MA0027.1	MA0027.1	0.962
MA0028.1	MA0028.1	0.13
MA0029.1	MA0029.1	0.135
MA0030.1	MA0030.1	0.118
MA0031.1	MA0031.1	0.301
MA0035.2	MA0035.2	0.309
MA0038.1	MA0038.1	0.601
MA0039.2	MA0039.2	0.867
MA0040.1	MA0040.1	0.746
MA0041.1	MA0041.1	0.417
MA0042.1	MA0042.1	0.936
MA0043.1	MA0043.1	9.80958e-9
MA0046.1	MA0046.1	0.0227
MA0047.2	MA0047.2	0.334
MA0048.1	MA0048.1	0.689
MA0050.1	MA0050.1	3.31653e-15
MA0051.1	MA0051.1	1.42645e-9
MA0052.1	MA0052.1	0.173
MA0055.1	MA0055.1	0.508
MA0057.1	MA0057.1	0.398
MA0058.1	MA0058.1	0.152
MA0059.1	MA0059.1	0.182
MA0060.1	MA0060.1	2.44784e-7
MA0061.1	MA0061.1	8.97438e-21
MA0062.2	MA0062.2	0.576
MA0065.2	MA0065.2	0.0289
MA0066.1	MA0066.1	0.052
MA0067.1	MA0067.1	6.21139e-6
MA0068.1	MA0068.1	0.534
MA0069.1	MA0069.1	0.771
MA0070.1	MA0070.1	0.0237
MA0071.1	MA0071.1	0.552
MA0072.1	MA0072.1	0.621
MA0073.1	MA0073.1	0.441
MA0074.1	MA0074.1	0.2
MA0076.1	MA0076.1	0.147
MA0077.1	MA0077.1	0.332
MA0078.1	MA0078.1	0.555
MA0079.2	MA0079.2	0.188
MA0080.2	MA0080.2	1.05452e-11
MA0081.1	MA0081.1	4.76743e-4
MA0083.1	MA0083.1	0.518
MA0084.1	MA0084.1	0.521
MA0087.1	MA0087.1	0.636
MA0088.1	MA0088.1	0.588
MA0090.1	MA0090.1	0.477
MA0091.1	MA0091.1	0.898
MA0092.1	MA0092.1	0.391
MA0093.1	MA0093.1	0.361
MA0099.2	MA0099.2	2.73311e-45
MA0100.1	MA0100.1	0.757
MA0101.1	MA0101.1	1.09862e-23
MA0102.2	MA0102.2	1.0476e-9
MA0103.1	MA0103.1	0.0343
MA0104.2	MA0104.2	0.292
MA0105.1	MA0105.1	1.37784e-23
MA0106.1	MA0106.1	0.962
MA0107.1	MA0107.1	3.05257e-30
MA0108.2	MA0108.2	0.705
MA0111.1	MA0111.1	0.549
MA0112.2	MA0112.2	4.9562e-4
MA0113.1	MA0113.1	0.799
MA0114.1	MA0114.1	0.209
MA0115.1	MA0115.1	0.704
MA0116.1	MA0116.1	1.68758e-4
MA0117.1	MA0117.1	0.0528
MA0119.1	MA0119.1	0.154
MA0122.1	MA0122.1	0.599
MA0124.1	MA0124.1	0.244
MA0125.1	MA0125.1	0.272
MA0131.1	MA0131.1	0.451
MA0135.1	MA0135.1	0.386
MA0136.1	MA0136.1	9.77454e-13
MA0137.2	MA0137.2	0.0225
MA0138.2	MA0138.2	0.138
MA0139.1	MA0139.1	0.795
MA0140.1	MA0140.1	0.477
MA0141.1	MA0141.1	0.288
MA0142.1	MA0142.1	0.498
MA0143.1	MA0143.1	0.989
MA0144.1	MA0144.1	0.0308
MA0145.1	MA0145.1	0.526
MA0146.1	MA0146.1	0.725
MA0147.1	MA0147.1	0.403
MA0148.1	MA0148.1	0.731
MA0149.1	MA0149.1	0.204
MA0150.1	MA0150.1	1.90623e-24
MA0152.1	MA0152.1	0.796
MA0153.1	MA0153.1	0.00306
MA0154.1	MA0154.1	1.24213e-4
MA0155.1	MA0155.1	0.896
MA0156.1	MA0156.1	3.06626e-9
MA0157.1	MA0157.1	0.995
MA0159.1	MA0159.1	0.0405
MA0160.1	MA0160.1	0.142
MA0162.1	MA0162.1	0.78
MA0163.1	MA0163.1	6.54629e-8
MA0164.1	MA0164.1	0.563
MA0258.1	MA0258.1	0.029
MA0259.1	MA0259.1	0.703

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13533

Novel motif	Logo	P-value
1	1	0.102
10	10	0.0273
100	100	0.855
101	101	0.906
102	102	0.972
103	103	0.243
104	104	0.531
105	105	0.125
106	106	5.53974e-4
107	107	0.212
108	108	0.624
109	109	0.382
11	11	0.193
110	110	0.197
111	111	0.167
112	112	0.456
113	113	0.474
114	114	0.0383
115	115	0.163
116	116	0.998
117	117	0.0892
118	118	0.259
119	119	0.197
12	12	0.272
120	120	0.768
121	121	0.655
122	122	0.671
123	123	0.812
124	124	0.762
125	125	0.296
126	126	0.272
127	127	0.521
128	128	0.0651
129	129	0.415
13	13	0.11
130	130	0.439
131	131	0.988
132	132	0.0738
133	133	0.722
134	134	0.593
135	135	0.837
136	136	0.844
137	137	0.0225
138	138	0.435
139	139	0.162
14	14	0.52
140	140	0.442
141	141	0.271
142	142	0.158
143	143	0.0321
144	144	0.475
145	145	0.357
146	146	0.839
147	147	0.761
148	148	0.00883
149	149	0.859
15	15	0.193
150	150	0.304
151	151	0.674
152	152	0.448
153	153	0.708
154	154	0.747
155	155	0.824
156	156	0.746
157	157	0.647
158	158	0.0502
159	159	0.118
16	16	0.374
160	160	0.47
161	161	0.403
162	162	0.222
163	163	0.103
164	164	0.16
165	165	0.174
166	166	0.938
167	167	0.309
168	168	0.07
169	169	0.0348
17	17	0.27
18	18	0.102
19	19	0.608
2	2	0.446
20	20	0.211
21	21	0.788
22	22	0.356
23	23	0.0332
24	24	0.325
25	25	0.442
26	26	0.0966
27	27	0.566
28	28	0.336
29	29	0.288
3	3	0.152
30	30	0.457
31	31	0.752
32	32	0.376
33	33	0.236
34	34	0.692
35	35	0.0989
36	36	0.0825
37	37	0.0662
38	38	0.389
39	39	0.845
4	4	0.927
40	40	0.259
41	41	0.0202
42	42	0.299
43	43	0.0206
44	44	0.522
45	45	0.673
46	46	0.214
47	47	0.585
48	48	0.557
49	49	0.162
5	5	0.331
50	50	0.922
51	51	0.554
52	52	0.345
53	53	0.621
54	54	0.501
55	55	0.604
56	56	0.727
57	57	0.864
58	58	0.147
59	59	0.214
6	6	0.793
60	60	0.0452
61	61	0.688
62	62	0.0877
63	63	0.612
64	64	0.577
65	65	0.224
66	66	0.414
67	67	0.423
68	68	0.5
69	69	0.212
7	7	0.234
70	70	0.0568
71	71	0.0296
72	72	0.179
73	73	0.269
74	74	0.0508
75	75	0.207
76	76	0.166
77	77	0.629
78	78	0.12
79	79	0.689
8	8	0.455
80	80	0.152
81	81	0.278
82	82	0.267
83	83	0.0191
84	84	0.0784
85	85	0.0505
86	86	0.0471
87	87	0.426
88	88	0.733
89	89	0.233
9	9	0.329
90	90	0.0907
91	91	0.376
92	92	0.299
93	93	0.581
94	94	0.114
95	95	0.538
96	96	0.377
97	97	0.507
98	98	0.171
99	99	0.0508

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13533

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011108 human CD14-positive monocytes - treated with lipopolysaccharide sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000335 (LPS treatment sample)
0011108 (human CD14-positive monocytes - treated with lipopolysaccharide sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00006012
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000839,CL:0000548,CL:0002194,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0002031,CL:0000576,CL:0000037,CL:0000860,CL:0000566,CL:0000049,CL:0000557,CL:0000837,CL:0002057,CL:0002009,CL:0000040,CL:0000559
+|accession_numbers=CAGE;DRX008160;DRR009032;DRZ000457;DRZ001842;DRZ011807;DRZ013192
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000625,FF:0000350,FF:0000335,FF:0011108
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.78!6013.97!PLEK;;chr7:115670804..115670825,-!p1@TFEC!3.05!1121.41!TFEC;;chr11:47400078..47400106,-!p1@SPI1!2.86!719.61!SPI1;;chr16:85932760..85932775,+!p1@IRF8!2.85!703.78!IRF8;;chr3:101546827..101546847,+!p2@NFKBIZ!2.38!331.08!NFKBIZ;;chr10:64018918..64018936,+!p2@ZNF365!2.32!208.45!ZNF365;;chr2:192015701..192015743,-!p1@STAT4!2.20!214.71!STAT4;;chr12:54778471..54778528,-!p1@ZNF385A!2.16!145.10!ZNF385A;;chr11:47400062..47400077,-!p2@SPI1!2.16!143.26!SPI1;;chr20:39317868..39317884,-!p1@MAFB!2.13!1485.26!MAFB;;chr12:72056800..72056834,+!p1@THAP2!2.12!174.56!THAP2;;chr2:68592394..68592405,+!p2@PLEK!2.11!128.53!PLEK;;chr10:51572408..51572454,+!p3@NCOA4!2.10!693.10!NCOA4;;chr21:34442439..34442455,+!p1@OLIG1!2.07!117.85!OLIG1;;chr14:35872453..35872485,-!p2@NFKBIA!2.06!271.05!NFKBIA;;chr11:47399947..47399961,-!p3@SPI1!2.04!108.27!SPI1;;chr10:31288398..31288455,-!p2@ZNF438!2.03!123.00!ZNF438;;chr14:35873947..35873965,-!p1@NFKBIA!2.01!5898.33!NFKBIA;;chr6:106534192..106534224,+!p1@PRDM1!2.00!265.16!PRDM1;;chr2:61108695..61108753,+!p1@REL!1.99!623.86!REL;;chr12:72056749..72056767,+!p6@THAP2!1.99!107.54!THAP2;;chrX:153305787..153305807,-!p3@MECP2!1.99!97.23!MECP2;;chr10:104155659..104155676,+!p4@NFKB2!1.96!110.85!NFKB2;;chr10:64576105..64576133,-!p1@EGR2!1.94!173.09!EGR2;;chr16:31885093..31885165,+!p1@ZNF267!1.93!1199.85!ZNF267;;chr2:145275162..145275202,-!p2@ZEB2!1.91!447.83!ZEB2;;chr2:70142232..70142251,+!p1@MXD1!1.91!428.68!MXD1;;chr4:103422499..103422632,+!p1@NFKB1!1.89!1493.00!NFKB1;;chr21:30671690..30671762,+!p2@BACH1!1.88!244.90!BACH1;;chr5:142782823..142782854,-!p3@NR3C1!1.87!102.01!NR3C1;;chr1:38325227..38325246,-!p2@MTF1!1.87!98.70!MTF1;;chr12:72056773..72056796,+!p3@THAP2!1.87!93.54!THAP2;;chr11:47400032..47400043,-!p5@SPI1!1.86!72.18!SPI1;;chr2:145277640..145277771,-!p1@ZEB2!1.83!844.46!ZEB2;;chr10:104155480..104155534,+!p2@NFKB2!1.83!408.79!NFKB2;;chr10:35484053..35484076,+!p1@CREM!1.83!161.67!CREM;;chr10:31288370..31288393,-!p3@ZNF438!1.83!66.29!ZNF438;;chr9:102584262..102584276,+!p1@NR4A3!1.82!142.16!NR4A3;;chr3:101568349..101568365,+!p1@NFKBIZ!1.80!3036.45!NFKBIZ;;chr2:68615063..68615089,+!p4@PLEK!1.76!56.35!PLEK;;chr11:47399996..47400014,-!p4@SPI1!1.74!54.51!SPI1;;chr21:30673091..30673135,+!p7@BACH1!1.74!54.14!BACH1;;chr9:102584159..102584174,+!p2@NR4A3!1.73!93.54!NR4A3;;chr1:37940170..37940190,+!p1@ZC3H12A!1.72!597.35!ZC3H12A;;chr22:38597987..38598021,+!p2@MAFF!1.72!296.46!MAFF;;chr19:50432132..50432217,+!p2@ATF5!1.72!60.77!ATF5;;chr1:157108130..157108173,-!p1@ETV3!1.71!343.60!ETV3;;chr6:12012170..12012245,+!p1@HIVEP1!1.71!240.49!HIVEP1;;chr19:45971246..45971265,+!p1@FOSB!1.70!868.77!FOSB;;chr10:104154246..104154347,+!p3@NFKB2!1.70!286.15!NFKB2;;chr6:106534230..106534254,+!p2@PRDM1!1.70!118.22!PRDM1;;chr10:51572339..51572376,+!p4@NCOA4!1.70!106.80!NCOA4;;chr21:30671235..30671253,+!p1@BACH1!1.69!577.09!BACH1;;chr18:77155922..77155939,+!p1@NFATC1!1.69!127.06!NFATC1;;chr11:65430554..65430579,-!p3@RELA!1.69!119.69!RELA;;chr7:50344289..50344323,+!p1@IKZF1!1.66!44.56!IKZF1;;chr9:102584128..102584144,+!p3@NR4A3!1.65!81.76!NR4A3;;chr8:123793988..123794016,+!p1@ZHX2!1.65!75.87!ZHX2;;chr2:68615031..68615055,+!p3@PLEK!1.64!42.35!PLEK;;chr6:144385698..144385742,-!p2@PLAGL1!1.63!50.82!PLAGL1;;chr11:615942..615957,-!p1@IRF7!1.61!357.97!IRF7;;chr11:47400045..47400060,-!p6@SPI1!1.61!40.14!SPI1;;chr14:35872494..35872511,-!p5@NFKBIA!1.60!51.19!NFKBIA;;chr2:61108808..61108821,+!p3@REL!1.60!48.98!REL;;chr13:41593425..41593480,-!p1@ELF1!1.59!229.07!ELF1;;chr6:126240380..126240430,+!p2@NCOA7!1.58!92.81!NCOA7;;chr1:212782094..212782109,+!p1@ATF3!1.57!927.32!ATF3;;chr8:22550982..22550999,-!p1@EGR3!1.57!100.17!EGR3;;chr6:391743..391759,+!p1@IRF4!1.57!36.46!IRF4;;chr9:129567282..129567353,+!p1@ZBTB43!1.55!430.52!ZBTB43;;chr21:36260295..36260310,-!p3@RUNX1!1.55!54.87!RUNX1;;chrX:153305741..153305753,-!p4@MECP2!1.55!34.62!MECP2;;chr6:15246200..15246214,+!p2@JARID2!1.54!90.96!JARID2;;chr7:115670792..115670797,-!p2@TFEC!1.54!33.88!TFEC;;chr7:17338266..17338282,+!p1@AHR!1.53!339.18!AHR;;chr6:12011943..12012015,+!p2@HIVEP1!1.53!103.49!HIVEP1;;chr19:36391434..36391450,-!p1@NFKBID!1.52!61.50!NFKBID;;chr6:12012249..12012266,+!p5@HIVEP1!1.52!54.51!HIVEP1;;chr4:81104895..81104920,+!p2@PRDM8!1.52!47.88!PRDM8;;chr6:44233252..44233296,-!p1@NFKBIE!1.51!294.99!NFKBIE;;chr21:30672433..30672464,+!p6@BACH1!1.51!31.30!BACH1;;chr8:53373491..53373506,-!p4@ST18!1.50!30.94!ST18;;chr4:103423079..103423112,+!p4@NFKB1!1.50!30.94!NFKB1;;chr4:103446567..103446592,+!p15@NFKB1!1.50!30.94!NFKB1;;chr17:40440225..40440268,+!p3@STAT5A!1.48!37.20!STAT5A;;chr12:72056706..72056717,+!p10@THAP2!1.48!29.46!THAP2;;chr14:35872962..35873025,-!p3@NFKBIA!1.47!69.97!NFKBIA;;chr12:54778351..54778378,-!p6@ZNF385A!1.46!27.62!ZNF385A;;chrX:153305962..153305995,-!p5@MECP2!1.46!27.62!MECP2;;chr8:81397846..81397860,+!p3@ZBTB10!1.45!33.51!ZBTB10;;chr7:17338324..17338341,+!p3@AHR!1.44!86.18!AHR;;chr4:103446513..103446530,+!p19@NFKB1!1.44!26.52!NFKB1;;chr4:106068026..106068084,+!p1@TET2!1.43!222.07!TET2;;chr12:48298765..48298783,-!p2@VDR!1.43!53.40!VDR;;chr2:61108771..61108789,+!p4@REL!1.43!38.67!REL;;chr8:72755203..72755239,-!p10@MSC!1.42!25.41!MSC;;chr8:81397820..81397836,+!p2@ZBTB10!1.41!30.94!ZBTB10;;chr20:48807351..48807384,+!p1@CEBPB!1.40!2358.82!CEBPB;;chr21:40177845..40177863,+!p1@ETS2!1.40!1358.21!ETS2;;chrX:129244454..129244488,-!p1@ELF4!1.40!167.57!ELF4;;chr2:231090471..231090504,+!p2@SP140!1.40!24.31!SP140;;chr2:145277882..145277967,-!p3@ZEB2!1.39!40.14!ZEB2;;chr14:35872926..35872951,-!p4@NFKBIA!1.38!32.41!NFKBIA;;chr17:38497662..38497713,+!p4@RARA!1.38!26.52!RARA;;chr2:97202480..97202499,+!p1@ARID5A!1.37!220.97!ARID5A;;chr12:96588219..96588263,+!p2@ELK3!1.36!151.73!ELK3;;chr17:40440359..40440386,+!p4@STAT5A!1.36!22.10!STAT5A;;chr1:221052733..221052749,+!p2@HLX!1.35!27.62!HLX;;chr11:47399920..47399931,-!p7@SPI1!1.35!21.36!SPI1;;chr2:68615096..68615115,+!p5@PLEK!1.34!20.99!PLEK;;chr6:143266297..143266356,-!p1@HIVEP2!1.33!96.12!HIVEP2;;chr2:185463247..185463263,+!p1@ZNF804A!1.33!36.09!ZNF804A;;chr3:170075436..170075520,+!p1@SKIL!1.32!412.47!SKIL;;chr12:11802753..11802834,+!p2@ETV6!1.32!96.12!ETV6;;chrX:24167086..24167111,+!p4@ZFX!1.32!19.89!ZFX;;chr19:45251395..45251432,+!p8@BCL3!1.32!19.89!BCL3;;chr5:88178983..88179012,-!p1@MEF2C!1.31!146.94!MEF2C;;chr20:48599506..48599526,+!p1@SNAI1!1.31!123.00!SNAI1;;chr19:45252008..45252024,+!p2@BCL3!1.31!63.34!BCL3;;chr2:231084639..231084654,-!p2@SP110!1.31!32.04!SP110;;chr16:69599899..69599919,+!p2@NFAT5!1.30!211.76!NFAT5;;chr1:120190786..120190915,-!p1@ZNF697!1.30!133.68!ZNF697;;chr2:238600998..238601013,+!p5@LRRFIP1!1.30!19.15!LRRFIP1;;chr19:19496539..19496576,+!p8@GATAD2A!1.29!32.41!GATAD2A;;chr12:96588279..96588299,+!p4@ELK3!1.28!84.34!ELK3;;chr7:106809470..106809481,+!p2@HBP1!1.28!25.04!HBP1;;chr5:131826457..131826514,-!p1@IRF1!1.27!676.16!IRF1;;chr9:110252035..110252057,-!p1@KLF4!1.27!275.47!KLF4;;chr2:157189180..157189290,-!p1@NR4A2!1.27!89.12!NR4A2;;chr3:37217736..37217753,-!p2@LRRFIP2!1.27!72.92!LRRFIP2;;chr10:35484090..35484104,+!p6@CREM!1.27!17.68!CREM;;chr6:106535598..106535637,+!p7@PRDM1!1.27!17.68!PRDM1;;chr1:38325256..38325280,-!p1@MTF1!1.26!104.96!MTF1;;chr2:28618532..28618610,+!p4@FOSL2!1.26!29.09!FOSL2;;chr18:3449586..3449617,+!p8@TGIF1!1.26!27.62!TGIF1;;chr12:52445218..52445237,+!p1@NR4A1!1.25!205.50!NR4A1;;chr3:12329397..12329433,+!p2@PPARG!1.25!37.56!PPARG;;chr8:72756063..72756125,-!p1@MSC!1.25!33.51!MSC;;chr1:221052776..221052799,+!p1@HLX!1.25!29.83!HLX;;chr9:102584241..102584261,+!p4@NR4A3!1.25!26.15!NR4A3;;chr21:40177892..40177903,+!p2@ETS2!1.24!65.19!ETS2;;chr12:96588368..96588394,+!p3@ELK3!1.24!43.83!ELK3;;chr4:83822199..83822239,+!p2@THAP9!1.24!19.52!THAP9;;chr8:72756637..72756664,-!p3@MSC!1.24!18.78!MSC;;chr2:231090433..231090469,+!p1@SP140!1.24!16.57!SP140;;chr10:31288329..31288353,-!p7@ZNF438!1.24!16.57!ZNF438;;chr19:50432104..50432126,+!p6@ATF5!1.24!16.20!ATF5;;chr2:208394817..208394834,+!p3@CREB1!1.23!63.34!CREB1;;chr6:35310395..35310410,+!p2@PPARD!1.23!61.50!PPARD;;chr2:145275228..145275241,-!p11@ZEB2!1.23!19.15!ZEB2;;chr11:65430535..65430549,-!p4@RELA!1.23!18.41!RELA;;chr8:72755345..72755349,-!p14@MSC!1.23!15.84!MSC;;chr10:3827371..3827386,-!p2@KLF6!1.22!129.27!KLF6;;chr14:64970670..64970712,-!p3@ZBTB25!1.22!33.14!ZBTB25;;chr21:30672734..30672748,+!p11@BACH1!1.22!15.47!BACH1;;chr6:15246261..15246312,+!p1@JARID2!1.21!364.59!JARID2;;chr22:38598086..38598105,+!p1@MAFF!1.21!161.31!MAFF;;chr18:3449618..3449634,+!p13@TGIF1!1.21!18.78!TGIF1;;chr11:34642612..34642646,+!p1@EHF!1.21!15.10!EHF;;chr2:73520667..73520683,-!p1@EGR4!1.21!15.10!EGR4;;chr3:187454281..187454300,-!p8@BCL6!1.21!15.10!BCL6;;chr2:178129358..178129403,-!p5@NFE2L2!1.20!59.66!NFE2L2;;chr8:80679993..80680011,-!p1@HEY1!1.20!21.36!HEY1;;chr10:104155455..104155479,+!p1@NFKB2!1.19!209.92!NFKB2;;chr3:39195037..39195069,-!p2@CSRNP1!1.19!88.75!CSRNP1;;chr2:238600933..238600985,+!p3@LRRFIP1!1.19!77.34!LRRFIP1;;chr1:161736038..161736056,+!p4@ATF6!1.19!33.51!ATF6;;chr9:102584278..102584285,+!p5@NR4A3!1.19!14.36!NR4A3;;chr20:47894569..47894799,-!p1@ZNFX1!1.18!365.33!ZNFX1;;chr19:45250948..45250998,+!p3@BCL3!1.18!35.72!BCL3;;chr19:47616992..47617011,-!p4@ZC3H4!1.18!30.20!ZC3H4;;chr20:48807456..48807475,+!p3@CEBPB!1.18!26.88!CEBPB;;chr6:126240442..126240459,+!p4@NCOA7!1.18!18.05!NCOA7;;chr1:221054853..221054873,+!p9@HLX!1.18!13.99!HLX;;chr19:19496624..19496660,+!p3@GATAD2A!1.17!62.24!GATAD2A;;chr2:28615716..28615733,+!p1@FOSL2!1.15!608.76!FOSL2;;chr21:36421535..36421610,-!p2@RUNX1!1.15!47.14!RUNX1;;chr13:41635029..41635044,-!p4@ELF1!1.15!27.62!ELF1;;chr10:35416142..35416169,+!p3@CREM!1.14!33.88!CREM;;chr20:48807648..48807671,+!p9@CEBPB!1.14!18.41!CEBPB;;chr11:65430586..65430593,-!p5@RELA!1.14!14.36!RELA;;chr10:104155680..104155687,+!p6@NFKB2!1.14!12.89!NFKB2;;chr2:178129414..178129517,-!p1@NFE2L2!1.13!484.29!NFE2L2;;chr10:114709999..114710031,+!p1@TCF7L2!1.13!291.31!TCF7L2;;chr1:158979872..1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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
+|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=EFO:0000369,FF:0000335,FF:0000625,FF:0011108,FF:11875-125C3
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520lipopolysaccharide%252c%2520donor2.CNhs13533.11875-125C3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520lipopolysaccharide%252c%2520donor2.CNhs13533.11875-125C3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520lipopolysaccharide%252c%2520donor2.CNhs13533.11875-125C3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520lipopolysaccharide%252c%2520donor2.CNhs13533.11875-125C3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520lipopolysaccharide%252c%2520donor2.CNhs13533.11875-125C3.hg38.nobarcode.ctss.bed.gz
 |id=FF:11875-125C3
-|is_a=EFO:0002091;;FF:0000002;;FF:0000210;;FF:0011108
+|is_a=EFO:0002091;;FF:0011108
+|is_obsolete=
+|library_id=CNhs13533
+|library_id_phase_based=2:CNhs13533
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11875
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11875
 |name=CD14+ monocytes - treated with lipopolysaccharide, donor2
 |namespace=
@@ Line 42: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13533,LSID1029,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=125
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@@ Line 57: / Line 79: @@
 |rna_weight_ug=1.95381
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 |sample_cell_line=
@@ Line 77: / Line 100: @@
 |sample_tissue=
 |top_motifs=NFE2:5.77425692715;NFE2L2:5.49434650863;FOS_FOS{B,L1}_JUN{B,D}:5.28227791303;IRF7:5.27275352124;FOSL2:5.25284409067;HLF:5.23611616709;BACH2:5.10479850975;CEBPA,B_DDIT3:4.84123304523;NFKB1_REL_RELA:4.75555675533;PAX2:4.37325085535;IRF1,2:4.32246125947;NFIL3:4.04770318543;FOXP3:3.89910359054;SPIB:3.57617886233;NFATC1..3:3.45130597521;PAX8:3.3733944485;ATF5_CREB3:3.20894965206;SPI1:3.2037633952;DMAP1_NCOR{1,2}_SMARC:3.19777458684;STAT5{A,B}:3.18859212484;ETS1,2:3.02295654275;ATF4:2.89571286375;SREBF1,2:2.80409777431;HSF1,2:2.71215650925;STAT2,4,6:2.65444725763;HMGA1,2:2.49196086779;CREB1:2.45720673299;NANOG{mouse}:2.45653043037;ATF6:2.37962961942;JUN:2.12227461608;FOXN1:2.10972652417;RUNX1..3:2.06713347287;NFE2L1:2.04111203409;PAX3,7:1.81190912881;CDX1,2,4:1.7968086638;ATF2:1.79161797645;NR1H4:1.67831674176;MAFB:1.49880913057;ELF1,2,4:1.33366314351;HOXA9_MEIS1:1.32232177798;ALX4:1.26486427957;PDX1:1.24782121164;TGIF1:1.10040896764;RXRA_VDR{dimer}:0.993839199167;OCT4_SOX2{dimer}:0.94136518304;TBP:0.901020239309;HOX{A5,B5}:0.882043870659;POU2F1..3:0.809069295921;XBP1:0.770614143291;PRDM1:0.623980667957;FOXO1,3,4:0.559094433203;SRF:0.546248404961;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.509554219861;IKZF1:0.489162141979;EP300:0.475517748229;RBPJ:0.467344283973;STAT1,3:0.407536019509;EN1,2:0.397983851088;GLI1..3:0.37951851351;PPARG:0.35589879745;ZBTB16:0.337758573355;POU5F1:0.313317218767;ALX1:0.27113670696;PAX4:0.222072530903;NR3C1:0.204483333037;TLX2:0.20250540723;HIF1A:0.163852421462;NANOG:0.157772241863;SMAD1..7,9:0.0458382557972;HMX1:-0.0602295388328;EGR1..3:-0.0668439891126;AHR_ARNT_ARNT2:-0.0973797624507;BPTF:-0.210705745348;RORA:-0.326967848017;SOX2:-0.336255419526;FOXM1:-0.372959201964;HBP1_HMGB_SSRP1_UBTF:-0.376014662084;MEF2{A,B,C,D}:-0.396330001315;VSX1,2:-0.437441576431;GATA4:-0.463931854892;TFCP2:-0.468721758337;FOX{D1,D2}:-0.540178252662;FOXD3:-0.551135693646;RFX2..5_RFXANK_RFXAP:-0.614064909398;POU3F1..4:-0.630111177881;MYB:-0.707201093324;CRX:-0.730966879779;MZF1:-0.738680982805;NFIX:-0.757377332953;IKZF2:-0.762874150345;PAX1,9:-0.806861486863;NKX3-1:-0.807912501024;HES1:-0.820203563192;NHLH1,2:-0.866314473022;DBP:-0.875457062678;PRRX1,2:-0.887236330885;ESR1:-0.913824525163;SOX5:-0.932862539783;NR6A1:-0.956014136983;NKX2-2,8:-1.07582840287;PAX6:-1.14011113214;MYFfamily:-1.18649394302;ADNP_IRX_SIX_ZHX:-1.22177531506;TBX4,5:-1.26000931514;HNF4A_NR2F1,2:-1.26910283177;HNF1A:-1.33228483939;TAL1_TCF{3,4,12}:-1.35734650595;POU6F1:-1.36555334547;REST:-1.37279333522;ZNF238:-1.38027655099;E2F1..5:-1.43070409396;MED-1{core}:-1.45117290995;FOXL1:-1.46957279926;ZFP161:-1.47050040095;GZF1:-1.48177475802;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.48866086303;HOX{A4,D4}:-1.52252278672;FOX{F1,F2,J1}:-1.53321709782;ZNF384:-1.53803878278;TFDP1:-1.54404811195;GATA6:-1.54655428655;GTF2A1,2:-1.55931487014;CUX2:-1.56689824299;SPZ1:-1.57028340523;MTE{core}:-1.57342717037;FOXA2:-1.57421451815;TFAP4:-1.60344513245;TEAD1:-1.67656836365;PITX1..3:-1.68087037094;SOX{8,9,10}:-1.74763931751;BREu{core}:-1.75219456378;CDC5L:-1.78573652897;NKX2-1,4:-1.81820747825;ESRRA:-1.82134408337;TLX1..3_NFIC{dimer}:-1.84389422452;FOXP1:-1.85092953402;SP1:-1.85497759141;NKX6-1,2:-1.85918681668;PATZ1:-1.88037797114;POU1F1:-1.88375985648;NKX2-3_NKX2-5:-1.91110920822;GTF2I:-1.91380369764;ZNF148:-1.92546742098;ZBTB6:-1.96636825014;HOX{A6,A7,B6,B7}:-1.96715197384;RFX1:-1.97751908144;TFAP2B:-1.97913085671;T:-2.04409936572;MTF1:-2.05920295794;GCM1,2:-2.12544486591;GFI1B:-2.12983672967;ZEB1:-2.17266784379;TEF:-2.20641982477;XCPE1{core}:-2.2117155118;MAZ:-2.22867794309;TP53:-2.233990011;NFY{A,B,C}:-2.23450858221;RXR{A,B,G}:-2.23762929824;ELK1,4_GABP{A,B1}:-2.27807201231;NKX3-2:-2.27932805017;TFAP2{A,C}:-2.30661108151;MYBL2:-2.30717154087;SNAI1..3:-2.34303525861;RREB1:-2.35409729332;HIC1:-2.38038359294;KLF4:-2.41055562436;EBF1:-2.60512001744;SOX17:-2.62021045628;MYOD1:-2.64499634923;FOX{I1,J2}:-2.67896017668;bHLH_family:-2.74038313428;ONECUT1,2:-2.74432530188;PBX1:-2.84022039275;ZIC1..3:-2.90448728402;FOXQ1:-2.91273866672;NRF1:-2.96797987919;AIRE:-3.00452000039;UFEwm:-3.00912696571;NR5A1,2:-3.01139688073;GFI1:-3.03856241507;EVI1:-3.12771663885;ZNF423:-3.29624882284;PAX5:-3.30743724729;LMO2:-3.33384826926;ARID5B:-3.45342882787;AR:-3.46970607526;YY1:-3.48464687727;LHX3,4:-3.52520770162;LEF1_TCF7_TCF7L1,2:-3.72949709263;ZNF143:-3.79757959212;TOPORS:-3.95353791478;HAND1,2:-4.67523784059
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11875-125C3;search_select_hide=table117:FF:11875-125C3
 }}

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FF:11875-125C3: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:25, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0