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{{f5samples
 
{{f5samples
 
|DRA_sample_Accession=CAGE@SAMD00005127
 
|DRA_sample_Accession=CAGE@SAMD00005127
|accession_numbers=CAGE;DRX008186;DRR009058;DRZ000483;DRZ001868
+
|accession_numbers=CAGE;DRX008186;DRR009058;DRZ000483;DRZ001868;DRZ011833;DRZ013218
 
|ancestors_in_anatomy_facet=
 
|ancestors_in_anatomy_facet=
 
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
 
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
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|def=
 
|def=
 
|expression_enrichment_score=chrX:49121165..49121179,-!p1@FOXP3!2.49!307.36!FOXP3;;chr6:106546808..106546833,+!p3@PRDM1!2.13!165.46!PRDM1;;chr3:63953435..63953499,+!p1@ATXN7!2.02!103.99!ATXN7;;chr6:106546834..106546850,+!p4@PRDM1!1.83!66.35!PRDM1;;chr3:71355163..71355209,-!p5@FOXP1!1.82!88.82!FOXP1;;chr2:231090433..231090469,+!p1@SP140!1.80!61.47!SP140;;chr4:109087445..109087463,-!p1@LEF1!1.79!61.20!LEF1;;chr7:50343634..50343717,+!p2@IKZF1!1.78!58.76!IKZF1;;chr2:231090471..231090504,+!p2@SP140!1.75!55.24!SP140;;chrY:21906594..21906622,-!p1@KDM5D!1.74!53.35!KDM5D;;chr10:8096631..8096660,+!p1@GATA3!1.69!57.41!GATA3;;chr6:391743..391759,+!p1@IRF4!1.67!45.77!IRF4;;chr15:60884706..60884743,-!p1@RORA!1.65!215.02!RORA;;chr20:56195474..56195506,-!p1@ZBP1!1.60!38.72!ZBP1;;chr14:75988771..75988826,+!p1@BATF!1.57!47.39!BATF;;chr8:60031619..60031676,-!p1@TOX!1.56!73.93!TOX;;chr19:54058073..54058088,+!p1@ZNF331!1.56!35.20!ZNF331;;chr17:37934365..37934387,-!p2@IKZF3!1.55!34.12!IKZF3;;chr2:192015750..192015793,-!p2@STAT4!1.54!44.95!STAT4;;chr2:192015701..192015743,-!p1@STAT4!1.53!44.41!STAT4;;chr9:117150254..117150271,-!p1@AKNA!1.52!84.49!AKNA;;chr19:54041669..54041697,+!p2@ZNF331!1.51!31.41!ZNF331;;chr6:106546786..106546802,+!p6@PRDM1!1.48!29.52!PRDM1;;chr17:37934204..37934241,-!p3@IKZF3!1.46!27.89!IKZF3;;chr1:25256756..25256774,-!p1@RUNX3!1.43!47.66!RUNX3;;chr13:41593425..41593480,-!p1@ELF1!1.39!146.23!ELF1;;chr10:35484053..35484076,+!p1@CREM!1.39!58.22!CREM;;chr19:16435625..16435682,+!p1@KLF2!1.38!708.15!KLF2;;chr4:109089901..109089930,-!p3@LEF1!1.38!22.75!LEF1;;chr9:3525727..3525828,-!p2@RFX3!1.37!55.79!RFX3;;chr14:75988831..75988847,+!p2@BATF!1.36!21.94!BATF;;chr6:106546731..106546755,+!p5@PRDM1!1.34!21.12!PRDM1;;chr19:19779619..19779670,+!p1@ZNF101!1.32!55.51!ZNF101;;chr7:50343895..50343936,+!p5@IKZF1!1.32!20.04!IKZF1;;chrX:106960285..106960299,-!p1@TSC22D3!1.31!507.22!TSC22D3;;chr10:8096772..8096787,+!p2@GATA3!1.30!22.48!GATA3;;chr2:214016254..214016282,-!p7@IKZF2!1.29!18.41!IKZF2;;chr21:36421535..36421610,-!p2@RUNX1!1.28!63.10!RUNX1;;chr14:64970670..64970712,-!p3@ZBTB25!1.28!38.45!ZBTB25;;chr4:109088089..109088101,-!p11@LEF1!1.28!18.14!LEF1;;chr2:214015343..214015366,-!p3@IKZF2!1.28!17.87!IKZF2;;chr2:157189180..157189290,-!p1@NR4A2!1.26!87.74!NR4A2;;chr3:71542615..71542644,-!p12@FOXP1!1.26!17.06!FOXP1;;chr20:50159198..50159299,-!p1@NFATC2!1.24!23.83!NFATC2;;chr10:35416142..35416169,+!p3@CREM!1.23!41.70!CREM;;chr4:109090075..109090095,-!p2@LEF1!1.22!15.71!LEF1;;chr19:36204309..36204335,+!p1@ZBTB32!1.22!15.44!ZBTB32;;chr5:133450365..133450444,+!p1@TCF7!1.21!68.51!TCF7;;chr10:35484090..35484104,+!p6@CREM!1.21!15.17!CREM;;chr19:45971246..45971265,+!p1@FOSB!1.20!270.26!FOSB;;chr20:56195525..56195556,-!p2@ZBP1!1.20!14.89!ZBP1;;chr11:128392273..128392308,-!p2@ETS1!1.19!61.20!ETS1;;chr12:56418637..56418648,+!p9@IKZF4!1.17!13.81!IKZF4;;chr4:185395633..185395651,-!p2@IRF2!1.15!20.85!IRF2;;chr4:109088940..109089037,-!p4@LEF1!1.15!13.27!LEF1;;chr3:71542684..71542720,-!p18@FOXP1!1.15!13.00!FOXP1;;chr11:128392085..128392232,-!p1@ETS1!1.14!427.60!ETS1;;chr6:12009042..12009092,+!p6@HIVEP1!1.14!16.52!HIVEP1;;chr17:37934280..37934299,-!p6@IKZF3!1.14!12.73!IKZF3;;chr17:38497662..38497713,+!p4@RARA!1.10!13.54!RARA;;chr7:137620650..137620677,-!p3@CREB3L2!1.10!11.64!CREB3L2;;chr7:50344251..50344288,+!p3@IKZF1!1.10!11.64!IKZF1;;chr10:63809077..63809089,+!p5@ARID5B!1.09!24.37!ARID5B;;chr19:19729477..19729542,-!p1@PBX4!1.09!24.37!PBX4;;chr2:97202991..97203043,+!p3@ARID5A!1.09!11.37!ARID5A;;chr11:128563948..128564003,+!p1@FLI1!1.08!132.96!FLI1;;chr11:67007548..67007610,+!p3@KDM2A!1.08!82.32!KDM2A;;chr7:64838786..64838809,+!p2@ZNF92!1.08!62.83!ZNF92;;chr1:45805693..45805718,+!p3@TOE1!1.08!24.10!TOE1;;chr19:12902289..12902307,+!p1@JUNB!1.07!2486.79!JUNB;;chr2:214013461..214013517,-!p6@IKZF2!1.07!10.83!IKZF2;;chr6:91006518..91006570,-!p1@BACH2!1.06!24.10!BACH2;;chr5:133451294..133451310,+!p2@TCF7!1.06!10.56!TCF7;;chr10:35485013..35485034,+!p15@CREM!1.06!10.56!CREM;;chr16:79634595..79634620,-!p2@MAF!1.05!18.96!MAF;;chr4:109088130..109088163,-!p13@LEF1!1.05!10.29!LEF1;;chr10:63809013..63809041,+!p3@ARID5B!1.03!54.43!ARID5B;;chr10:3824332..3824425,-!p4@KLF6!1.03!15.98!KLF6;;chr10:63809090..63809097,+!p7@ARID5B!1.03!13.81!ARID5B;;chr17:56565257..56565283,-!p2@HSF5!1.03!9.75!HSF5;;chr13:41240717..41240735,-!p2@FOXO1!1.01!64.18!FOXO1;;chr8:60031563..60031574,-!p7@TOX!1.01!9.21!TOX;;chr7:77428066..77428132,+!p2@PHTF2!1.00!60.12!PHTF2;;chr16:79634624..79634642,-!p1@MAF!1.00!36.02!MAF;;chr9:3525867..3525902,-!p3@RFX3!0.99!30.87!RFX3;;chr9:102584262..102584276,+!p1@NR4A3!0.99!19.77!NR4A3;;chr13:74707894..74707947,-!p6@KLF12!0.99!9.75!KLF12;;chr4:109086281..109086319,-!p9@LEF1!0.99!8.67!LEF1;;chr21:36421147..36421193,-!p10@RUNX1!0.99!8.67!RUNX1;;chr7:21467674..21467727,+!p1@SP4!0.98!34.93!SP4;;chr11:67007611..67007622,+!p6@KDM2A!0.98!11.64!KDM2A;;chr14:65569101..65569119,-!p3@MAX!0.97!26.81!MAX;;chr6:106534230..106534254,+!p2@PRDM1!0.97!21.66!PRDM1;;chr16:88752889..88752921,-!p1@SNAI3!0.97!9.75!SNAI3;;chr19:19779686..19779697,+!p3@ZNF101!0.97!9.75!ZNF101;;chr10:64134120..64134183,+!p1@ZNF365!0.96!9.75!ZNF365;;chrY:21906623..21906637,-!p3@KDM5D!0.96!8.12!KDM5D;;chr3:71542827..71542838,-!p53@FOXP1!0.96!8.12!FOXP1;;chr4:38665769..38665801,+!p2@KLF3!0.95!74.74!KLF3;;chr14:64971288..64971316,-!p2@ZBTB25!0.95!24.91!ZBTB25;;chr14:99738138..99738163,-!p1@BCL11B!0.95!7.85!BCL11B;;chr6:15249128..15249177,+!p4@JARID2!0.94!14.08!JARID2;;chr15:60884747..60884774,-!p3@RORA!0.93!18.96!RORA;;chr17:41738709..41738733,-!p3@MEOX1!0.93!7.58!MEOX1;;chr3:71542747..71542766,-!p34@FOXP1!0.93!7.58!FOXP1;;chr19:54040550..54040594,+!p20@ZNF331!0.93!7.58!ZNF331;;chr5:131826457..131826514,-!p1@IRF1!0.92!295.72!IRF1;;chr1:158979686..158979745,+!p1@IFI16!0.92!248.33!IFI16;;chr2:208394817..208394834,+!p3@CREB1!0.92!30.60!CREB1;;chr17:38020557..38020572,-!p4@IKZF3!0.92!7.31!IKZF3;;chrY:2803415..2803468,+!p1@ZFY!0.92!7.31!ZFY;;chrY:21906761..21906810,-!p2@KDM5D!0.92!7.31!KDM5D;;chr2:231084659..231084721,-!p1@SP110!0.91!172.77!SP110;;chr3:71179699..71179744,-!p2@FOXP1!0.91!55.24!FOXP1;;chr9:114287433..114287513,+!p1@ZNF483!0.91!19.23!ZNF483;;chr16:79633894..79633954,-!p3@MAF!0.91!14.08!MAF;;chr20:44600199..44600219,-!p3@ZNF335!0.91!9.75!ZNF335;;chr12:72056800..72056834,+!p1@THAP2!0.91!9.75!THAP2;;chr3:71542651..71542683,-!p22@FOXP1!0.91!7.04!FOXP1;;chr4:109089573..109089585,-!p8@LEF1!0.91!7.04!LEF1;;chr7:50343864..50343888,+!p7@IKZF1!0.91!7.04!IKZF1;;chr16:68119324..68119364,+!p1@NFATC3!0.90!32.23!NFATC3;;chr6:45390269..45390298,+!p5@RUNX2!0.89!11.64!RUNX2;;chr17:46621311..46621332,-!p8@HOXB2!0.89!8.94!HOXB2;;chr10:35416223..35416234,+!p12@CREM!0.89!6.77!CREM;;chr11:111249993..111250006,-!p1@POU2AF1!0.89!6.77!POU2AF1;;chr2:231090344..231090361,-!p3@SP110!0.89!6.77!SP110;;chr2:97202480..97202499,+!p1@ARID5A!0.88!69.87!ARID5A;;chr5:172483347..172483407,+!p1@C5orf41!0.88!52.27!CREBRF;;chr2:148778973..148779035,+!p3@MBD5!0.88!17.87!MBD5;;chr3:18486354..18486377,-!p2@SATB1!0.88!8.39!SATB1;;chr19:54041645..54041661,+!p5@ZNF331!0.88!6.50!ZNF331;;chr10:63809106..63809127,+!p1@ARID5B!0.87!90.99!ARID5B;;chr19:52674696..52674758,-!p1@ZNF836!0.87!20.04!ZNF836;;chrX:101186981..101187030,-!p1@ZMAT1!0.86!21.39!ZMAT1;;chr13:74708029..74708077,-!p2@KLF12!0.86!18.96!KLF12;;chr1:44679370..44679422,+!p3@DMAP1!0.86!8.39!DMAP1;;chr20:51588873..51588953,+!p1@TSHZ2!0.86!8.39!TSHZ2;;chr10:35416172..35416184,+!p13@CREM!0.86!6.23!CREM;;chr6:106547079..106547114,+!p9@PRDM1!0.86!6.23!PRDM1;;chr17:45810594..45810608,+!p1@TBX21!0.86!6.23!TBX21;;chr13:41240737..41240787,-!p1@FOXO1!0.85!77.45!FOXO1;;chr2:61108650..61108687,+!p2@REL!0.85!31.41!REL;;chr9:32550965..32551031,-!p4@TOPORS!0.85!9.75!TOPORS;;chr7:64838754..64838778,+!p1@ZNF92!0.84!60.93!ZNF92;;chr19:49140609..49140643,-!p1@DBP!0.84!36.02!DBP;;chr6:152011654..152011682,+!p1@ESR1!0.84!5.96!ESR1;;chr17:38020392..38020477,-!p1@IKZF3!0.84!5.96!IKZF3;;chr12:56415246..56415286,+!p2@IKZF4!0.84!5.96!IKZF4;;chrX:106960180..106960197,-!p2@TSC22D3!0.83!23.56!TSC22D3;;chr9:32550839..32550962,-!p3@TOPORS!0.83!15.17!TOPORS;;chr4:81104895..81104920,+!p2@PRDM8!0.83!8.94!PRDM8;;chr19:45972701..45972774,+!p2@FOSB!0.83!8.12!FOSB;;chr7:50344144..50344157,+!p6@IKZF1!0.83!5.69!IKZF1;;chr19:38085768..38085821,+!p1@ZNF540!0.82!8.67!ZNF540;;chr19:21203451..21203475,+!p1@ZNF430!0.81!59.58!ZNF430;;chr4:106068026..106068084,+!p1@TET2!0.81!53.08!TET2;;chr2:238600933..238600985,+!p3@LRRFIP1!0.81!31.95!LRRFIP1;;chr16:3313791..3313834,+!p2@ZNF263!0.81!12.73!ZNF263;;chr9:102584241..102584261,+!p4@NR4A3!0.81!8.67!NR4A3;;chr7:50344289..50344323,+!p1@IKZF1!0.81!5.42!IKZF1;;chr2:214014959..214015006,-!p4@IKZF2!0.81!5.42!IKZF2;;chr4:109089996..109090012,-!p5@LEF1!0.81!5.42!LEF1;;chr13:41593493..41593506,-!p8@ELF1!0.81!5.42!ELF1;;chr16:79634581..79634592,-!p4@MAF!0.81!5.42!MAF;;chr10:63661437..63661465,+!p2@ARID5B!0.80!110.22!ARID5B;;chr14:90085458..90085557,-!p1@FOXN3!0.80!60.66!FOXN3;;chr6:130339710..130339745,+!p1@L3MBTL3!0.80!45.50!L3MBTL3;;chr2:61108695..61108753,+!p1@REL!0.80!39.27!REL;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!0.80!31.95!ZNF10;;chr6:12008986..12009016,+!p3@HIVEP1!0.80!17.87!HIVEP1;;chr6:106534192..106534224,+!p1@PRDM1!0.80!15.98!PRDM1;;chr2:178128250..178128293,-!p6@NFE2L2!0.80!14.08!NFE2L2;;chr8:116681150..116681164,-!p5@TRPS1!0.80!10.83!TRPS1;;chr4:87857433..87857472,+!p9@AFF1!0.80!10.02!AFF1;;chr6:91006575..91006602,-!p2@BACH2!0.80!8.12!BACH2;;chr7:64126503..64126528,+!p1@ZNF107!0.79!39.27!ZNF107;;chr4:185395590..185395627,-!p3@IRF2!0.79!6.50!IRF2;;chr4:38665810..38665827,+!p1@KLF3!0.78!80.97!KLF3;;chr11:85375237..85375277,-!p4@CREBZF!0.78!5.96!CREBZF;;chr16:31885093..31885165,+!p1@ZNF267!0.77!82.05!ZNF267;;chr1:37940170..37940190,+!p1@ZC3H12A!0.77!65.53!ZC3H12A;;chr1:14026671..14026705,+!p2@PRDM2!0.77!32.77!PRDM2;;chr21:30671690..30671762,+!p2@BACH1!0.77!17.87!BACH1;;chr2:214015111..214015179,-!p1@IKZF2!0.77!9.21!IKZF2;;chr1:25255763..25255774,-!p10@RUNX3!0.77!4.87!RUN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|expression_enrichment_score=chrX:49121165..49121179,-!p1@FOXP3!2.49!307.36!FOXP3;;chr6:106546808..106546833,+!p3@PRDM1!2.13!165.46!PRDM1;;chr3:63953435..63953499,+!p1@ATXN7!2.02!103.99!ATXN7;;chr6:106546834..106546850,+!p4@PRDM1!1.83!66.35!PRDM1;;chr3:71355163..71355209,-!p5@FOXP1!1.82!88.82!FOXP1;;chr2:231090433..231090469,+!p1@SP140!1.80!61.47!SP140;;chr4:109087445..109087463,-!p1@LEF1!1.79!61.20!LEF1;;chr7:50343634..50343717,+!p2@IKZF1!1.78!58.76!IKZF1;;chr2:231090471..231090504,+!p2@SP140!1.75!55.24!SP140;;chrY:21906594..21906622,-!p1@KDM5D!1.74!53.35!KDM5D;;chr10:8096631..8096660,+!p1@GATA3!1.69!57.41!GATA3;;chr6:391743..391759,+!p1@IRF4!1.67!45.77!IRF4;;chr15:60884706..60884743,-!p1@RORA!1.65!215.02!RORA;;chr20:56195474..56195506,-!p1@ZBP1!1.60!38.72!ZBP1;;chr14:75988771..75988826,+!p1@BATF!1.57!47.39!BATF;;chr8:60031619..60031676,-!p1@TOX!1.56!73.93!TOX;;chr19:54058073..54058088,+!p1@ZNF331!1.56!35.20!ZNF331;;chr17:37934365..37934387,-!p2@IKZF3!1.55!34.12!IKZF3;;chr2:192015750..192015793,-!p2@STAT4!1.54!44.95!STAT4;;chr2:192015701..192015743,-!p1@STAT4!1.53!44.41!STAT4;;chr9:117150254..117150271,-!p1@AKNA!1.52!84.49!AKNA;;chr19:54041669..54041697,+!p2@ZNF331!1.51!31.41!ZNF331;;chr6:106546786..106546802,+!p6@PRDM1!1.48!29.52!PRDM1;;chr17:37934204..37934241,-!p3@IKZF3!1.46!27.89!IKZF3;;chr1:25256756..25256774,-!p1@RUNX3!1.43!47.66!RUNX3;;chr13:41593425..41593480,-!p1@ELF1!1.39!146.23!ELF1;;chr10:35484053..35484076,+!p1@CREM!1.39!58.22!CREM;;chr19:16435625..16435682,+!p1@KLF2!1.38!708.15!KLF2;;chr4:109089901..109089930,-!p3@LEF1!1.38!22.75!LEF1;;chr9:3525727..3525828,-!p2@RFX3!1.37!55.79!RFX3;;chr14:75988831..75988847,+!p2@BATF!1.36!21.94!BATF;;chr6:106546731..106546755,+!p5@PRDM1!1.34!21.12!PRDM1;;chr19:19779619..19779670,+!p1@ZNF101!1.32!55.51!ZNF101;;chr7:50343895..50343936,+!p5@IKZF1!1.32!20.04!IKZF1;;chrX:106960285..106960299,-!p1@TSC22D3!1.31!507.22!TSC22D3;;chr10:8096772..8096787,+!p2@GATA3!1.30!22.48!GATA3;;chr2:214016254..214016282,-!p7@IKZF2!1.29!18.41!IKZF2;;chr21:36421535..36421610,-!p2@RUNX1!1.28!63.10!RUNX1;;chr14:64970670..64970712,-!p3@ZBTB25!1.28!38.45!ZBTB25;;chr4:109088089..109088101,-!p11@LEF1!1.28!18.14!LEF1;;chr2:214015343..214015366,-!p3@IKZF2!1.28!17.87!IKZF2;;chr2:157189180..157189290,-!p1@NR4A2!1.26!87.74!NR4A2;;chr3:71542615..71542644,-!p12@FOXP1!1.26!17.06!FOXP1;;chr20:50159198..50159299,-!p1@NFATC2!1.24!23.83!NFATC2;;chr10:35416142..35416169,+!p3@CREM!1.23!41.70!CREM;;chr4:109090075..109090095,-!p2@LEF1!1.22!15.71!LEF1;;chr19:36204309..36204335,+!p1@ZBTB32!1.22!15.44!ZBTB32;;chr5:133450365..133450444,+!p1@TCF7!1.21!68.51!TCF7;;chr10:35484090..35484104,+!p6@CREM!1.21!15.17!CREM;;chr19:45971246..45971265,+!p1@FOSB!1.20!270.26!FOSB;;chr20:56195525..56195556,-!p2@ZBP1!1.20!14.89!ZBP1;;chr11:128392273..128392308,-!p2@ETS1!1.19!61.20!ETS1;;chr12:56418637..56418648,+!p9@IKZF4!1.17!13.81!IKZF4;;chr4:185395633..185395651,-!p2@IRF2!1.15!20.85!IRF2;;chr4:109088940..109089037,-!p4@LEF1!1.15!13.27!LEF1;;chr3:71542684..71542720,-!p18@FOXP1!1.15!13.00!FOXP1;;chr11:128392085..128392232,-!p1@ETS1!1.14!427.60!ETS1;;chr6:12009042..12009092,+!p6@HIVEP1!1.14!16.52!HIVEP1;;chr17:37934280..37934299,-!p6@IKZF3!1.14!12.73!IKZF3;;chr17:38497662..38497713,+!p4@RARA!1.10!13.54!RARA;;chr7:137620650..137620677,-!p3@CREB3L2!1.10!11.64!CREB3L2;;chr7:50344251..50344288,+!p3@IKZF1!1.10!11.64!IKZF1;;chr10:63809077..63809089,+!p5@ARID5B!1.09!24.37!ARID5B;;chr19:19729477..19729542,-!p1@PBX4!1.09!24.37!PBX4;;chr2:97202991..97203043,+!p3@ARID5A!1.09!11.37!ARID5A;;chr11:128563948..128564003,+!p1@FLI1!1.08!132.96!FLI1;;chr11:67007548..67007610,+!p3@KDM2A!1.08!82.32!KDM2A;;chr7:64838786..64838809,+!p2@ZNF92!1.08!62.83!ZNF92;;chr1:45805693..45805718,+!p3@TOE1!1.08!24.10!TOE1;;chr19:12902289..12902307,+!p1@JUNB!1.07!2486.79!JUNB;;chr2:214013461..214013517,-!p6@IKZF2!1.07!10.83!IKZF2;;chr6:91006518..91006570,-!p1@BACH2!1.06!24.10!BACH2;;chr5:133451294..133451310,+!p2@TCF7!1.06!10.56!TCF7;;chr10:35485013..35485034,+!p15@CREM!1.06!10.56!CREM;;chr16:79634595..79634620,-!p2@MAF!1.05!18.96!MAF;;chr4:109088130..109088163,-!p13@LEF1!1.05!10.29!LEF1;;chr10:63809013..63809041,+!p3@ARID5B!1.03!54.43!ARID5B;;chr10:3824332..3824425,-!p4@KLF6!1.03!15.98!KLF6;;chr10:63809090..63809097,+!p7@ARID5B!1.03!13.81!ARID5B;;chr17:56565257..56565283,-!p2@HSF5!1.03!9.75!HSF5;;chr13:41240717..41240735,-!p2@FOXO1!1.01!64.18!FOXO1;;chr8:60031563..60031574,-!p7@TOX!1.01!9.21!TOX;;chr7:77428066..77428132,+!p2@PHTF2!1.00!60.12!PHTF2;;chr16:79634624..79634642,-!p1@MAF!1.00!36.02!MAF;;chr9:3525867..3525902,-!p3@RFX3!0.99!30.87!RFX3;;chr9:102584262..102584276,+!p1@NR4A3!0.99!19.77!NR4A3;;chr13:74707894..74707947,-!p6@KLF12!0.99!9.75!KLF12;;chr4:109086281..109086319,-!p9@LEF1!0.99!8.67!LEF1;;chr21:36421147..36421193,-!p10@RUNX1!0.99!8.67!RUNX1;;chr7:21467674..21467727,+!p1@SP4!0.98!34.93!SP4;;chr11:67007611..67007622,+!p6@KDM2A!0.98!11.64!KDM2A;;chr14:65569101..65569119,-!p3@MAX!0.97!26.81!MAX;;chr6:106534230..106534254,+!p2@PRDM1!0.97!21.66!PRDM1;;chr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r3:71630690..71630750,-!p11@FOXP1!0.29!2.17!FOXP1;;chr8:116680833..116680881,-!p7@TRPS1!0.29!1.90!TRPS1;;chr19:35455160..35455197,-!p2@ZNF792!0.29!1.90!ZNF792;;chr5:138629417..138629446,+!p1@MATR3!0.28!159.50!MATR3;;chr10:60145155..60145206,+!p1@TFAM!0.28!75.28!TFAM;;chr13:20357063..20357105,-!p1@PSPC1!0.28!55.51!PSPC1;;chr5:138629628..138629688,+!p2@MATR3!0.28!40.89!MATR3;;chr16:3930681..3930721,-!p1@CREBBP!0.28!30.06!CREBBP;;chr11:47236489..47236567,+!p2@DDB2!0.28!23.29!DDB2;;chr1:173991434..173991556,-!p1@RC3H1!0.28!20.85!RC3H1;;chr19:9251052..9251079,+!p2@ZNF317!0.28!16.52!ZNF317;;chr1:78148324..78148365,-!p2@ZZZ3!0.28!15.71!ZZZ3;;chr1:247267618..247267674,-!p1@ZNF669!0.28!13.00!ZNF669;;chr19:12662240..12662310,-!p1@ZNF564,p1@ZNF709!0.28!12.73!ZNF564;;chr19:58427951..58427984,-!p1@ZNF417!0.28!11.64!ZNF417;;chr19:37157713..37157760,-!p1@ZNF461!0.28!9.21!ZNF461;;chr4:140005341..140005411,-!p3@ELF2!0.28!8.67!ELF2;;chrX:129244840..129244881,-!p2@ELF4!0.28!5.96!ELF4;;chr2:208394704..208394715,+!p4@CREB1!0.28!4.87!CREB1;;chr16:67596384..67596411,+!p3@CTCF!0.28!3.52!CTCF;;chr16:71518504..71518542,-!p1@ZNF19!0.28!3.52!ZNF19;;chr14:64971438..64971450,+!p2@ZBTB1!0.28!3.25!ZBTB1;;chr19:52674898..52674931,-!p3@ZNF836!0.28!2.98!ZNF836;;chr1:151043266..151043295,+!p2@GABPB2!0.28!2.98!GABPB2;;chr9:73028387..73028418,-!p4@KLF9!0.28!2.71!KLF9;;chr8:72756063..72756125,-!p1@MSC!0.28!2.71!MSC;;chr13:27998871..27998884,+!p4@GTF3A!0.28!1.90!GTF3A;;chr15:56535722..56535764,-!p3@RFX7!0.28!1.62!RFX7;;chr19:37960314..37960329,+!p3@ZNF570!0.28!1.35!ZNF570;;chrX:70585978..70586012,+!p3@TAF1!0.28!1.35!TAF1;;chr10:63851669..63851682,+!p10@ARID5B!0.28!1.08!ARID5B;;chr5:138629349..138629386,+!p3@MATR3!0.27!27.08!MATR3;;chr19:50169064..50169121,-!p1@IRF3!0.27!23.56!IRF3;;chr12:6798410..6798503,-!p1@ZNF384!0.27!17.60!ZNF384;;chr17:38256822..38256851,-!p1@NR1D1!0.27!12.73!NR1D1;;chr3:52719888..52719908,-!p2@PBRM1!0.27!7.31!PBRM1;;chr3:71179746..71179783,-!p7@FOXP1!0.27!4.87!FOXP1;;chr1:67395982..67396015,+!p4@MIER1!0.27!3.79!MIER1;;chr4:95128841..95128865,+!p4@SMARCAD1!0.27!2.71!SMARCAD1;;chr16:88636835..88636846,+!p2@ZC3H18!0.27!2.17!ZC3H18;;chr19:19496539..19496576,+!p8@GATAD2A!0.27!2.17!GATAD2A;;chr6:45389835..45389861,+!p7@RUNX2!0.27!1.90!RUNX2;;chr18:46475696..46475713,-!p1@SMAD7!0.27!1.08!SMAD7;;chr19:21579964..21579975,+!p2@ZNF493!0.27!1.08!ZNF493;;chr19:57183114..57183145,-!p1@ZNF835!0.27!1.08!ZNF835;;chr21:30671145..30671156,+!p8@BACH1!0.27!1.08!BACH1;;chr12:57914481..57914509,+!p5@MBD6!0.27!1.08!MBD6;;chr5:140080022..140080042,+!p1@ZMAT2!0.26!88.82!ZMAT2;;chr4:26322616..26322652,+!p1@RBPJ!0.26!35.75!RBPJ;;chr6:56954919..56955000,+!p1@ZNF451!0.26!32.23!ZNF451;;chr2:113012592..113012671,-!p1@ZC3H8!0.26!27.62!ZC3H8;;chr19:39390587..39390646,+!p1@NFKBIB!0.26!25.73!NFKBIB;;chr10:98592009..98592061,+!p1@C10orf12,p1@LCOR!0.26!23.29!LCOR;;chr19:35168567..35168620,+!p1@ZNF302!0.26!18.41!ZNF302;;chr19:44669221..44669274,+!p1@ZNF226,p1@ZNF234!0.26!17.06!ZNF226;;chr2:217277169..217277266,+!p1@SMARCAL1!0.26!16.52!SMARCAL1;;chr7:148959269..148959326,+!p1@ZNF783!0.26!12.73!ZNF783;;chr7:64023441..64023462,-!p1@ZNF680!0.26!12.46!ZNF680;;chr4:87856191..87856208,+!p2@AFF1!0.26!12.46!AFF1;;chr17:2304365..2304388,-!p2@MNT!0.26!7.04!MNT;;chr17:16557128..16557174,-!p1@ZNF624!0.26!6.77!ZNF624;;chr21:43299404..43299463,-!p1@PRDM15!0.26!6.77!PRDM15;;chr2:95831389..95831432,-!p1@ZNF514!0.26!6.50!ZNF514;;chr19:53030906..53030952,+!p1@ZNF808!0.26!5.42!ZNF808;;chr19:57901326..57901385,+!p2@ZNF548!0.26!3.25!ZNF548;;chr18:77867121..77867138,+!p2@ADNP2!0.26!2.17!ADNP2;;chrX:129244655..129244697,-!p4@ELF4!0.26!2.17!ELF4;;chr5:132299572..132299623,-!p6@AFF4!0.26!2.17!AFF4;;chr8:67525443..67525459,-!p2@MYBL1!0.26!1.62!MYBL1;;chr6:136599737..136599767,-!p2@BCLAF1!0.26!1.35!BCLAF1;;chr19:18391615..18391637,-!p5@JUND!0.26!1.35!JUND;;chr6:45296048..45296082,+!p1@RUNX2!0.26!1.08!RUNX2;;chr10:3824229..3824253,-!p7@KLF6!0.26!1.08!KLF6;;
 +
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000624;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
 
|fonse_cell_line=
 
|fonse_cell_line=
 
|fonse_cell_line_closure=
 
|fonse_cell_line_closure=
Line 40: Line 41:
 
|fonse_treatment_closure=
 
|fonse_treatment_closure=
 
|has_quality=
 
|has_quality=
 +
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%252c%2520donor3.CNhs13538.11908-125F9.hg19.nobarcode.bam
 +
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%252c%2520donor3.CNhs13538.11908-125F9.hg19.ctss.bed.gz
 +
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%252c%2520donor3.CNhs13538.11908-125F9.hg19.nobarcode.rdna.fa.gz
 +
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%252c%2520donor3.CNhs13538.11908-125F9.hg38.nobarcode.bam
 +
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%252c%2520donor3.CNhs13538.11908-125F9.hg38.nobarcode.ctss.bed.gz
 
|id=FF:11908-125F9
 
|id=FF:11908-125F9
 
|is_a=EFO:0002091;;FF:0000002;;FF:0000210
 
|is_a=EFO:0002091;;FF:0000002;;FF:0000210
Line 45: Line 51:
 
|library_id=CNhs13538
 
|library_id=CNhs13538
 
|library_id_phase_based=2:CNhs13538
 
|library_id_phase_based=2:CNhs13538
|name="CD4+CD25+CD45RA- memory regulatory T cells, donor3"
+
|microRNAs=
 +
|microRNAs_nn=
 +
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11908
 +
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11908
 +
|name=CD4+CD25+CD45RA- memory regulatory T cells, donor3
 
|namespace=
 
|namespace=
 
|part_of=
 
|part_of=
 
|profile_cagescan=,,,
 
|profile_cagescan=,,,
|profile_hcage="CNhs13538,LSID1029,release012,COMPLETED"
+
|profile_hcage=CNhs13538,LSID1029,release012,COMPLETED
 
|profile_rnaseq=
 
|profile_rnaseq=
|profile_srnaseq=",,,"
+
|profile_srnaseq=,,,
 +
|refex=http://refex.dbcls.jp/genelist.php?lang
 
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Line 89: Line 100:
 
|top_motifs=PAX3,7:3.59917875098;CDX1,2,4:3.21549776583;BPTF:2.68933796228;FOX{D1,D2}:2.57798247449;RUNX1..3:2.54643345197;ELF1,2,4:2.54100164665;FOX{F1,F2,J1}:2.27790572213;CREB1:2.26967429553;PDX1:2.13680482473;ATF5_CREB3:2.01434157063;TLX2:1.99863033613;ZBTB16:1.84504023859;DMAP1_NCOR{1,2}_SMARC:1.81826764414;FOXO1,3,4:1.80028506179;ETS1,2:1.77456370026;PAX4:1.76130531127;RFX2..5_RFXANK_RFXAP:1.74617034312;ATF4:1.7245244382;RORA:1.68044124533;HMX1:1.58662416223;FOX{I1,J2}:1.55336911834;FOXN1:1.4727691055;IRF1,2:1.36951696514;T:1.34659416608;SPI1:1.28999616846;TGIF1:1.13426215305;PBX1:1.07173324218;JUN:1.0686420514;NKX6-1,2:1.05783219327;ELK1,4_GABP{A,B1}:1.05375947798;GATA6:1.00964416322;PAX2:0.891524745416;SPIB:0.886432937711;YY1:0.864449000212;SPZ1:0.832913691865;CUX2:0.785157026557;NANOG{mouse}:0.727285567298;CRX:0.715689746267;ATF2:0.703921889911;IRF7:0.677229251304;ALX1:0.664125123582;RFX1:0.644627423643;NKX3-1:0.585884553224;BREu{core}:0.584687751275;STAT1,3:0.578522392426;SNAI1..3:0.569840757957;IKZF2:0.552028132024;POU1F1:0.548770031596;MYOD1:0.52409253041;EP300:0.515460985293;NFIL3:0.509117256023;NFIX:0.499804512748;ZEB1:0.461918721921;NFATC1..3:0.454713872023;LEF1_TCF7_TCF7L1,2:0.420683717806;ATF6:0.392308054887;NFKB1_REL_RELA:0.371977699581;SOX2:0.341078589577;FOXQ1:0.334736668761;FOXP1:0.289220733631;MYB:0.272858964418;PAX6:0.259730977229;SREBF1,2:0.233320755135;AHR_ARNT_ARNT2:0.19583139868;MAFB:0.181379700397;HAND1,2:0.180932361447;PITX1..3:0.175832147583;SOX5:0.166914951232;NKX2-2,8:0.130382814309;AIRE:0.106411946215;VSX1,2:0.0984184676811;ZNF384:0.0664195150959;NKX2-1,4:0.038606154803;NRF1:0.0382788187723;POU2F1..3:0.0257674908014;HIF1A:0.0179790330385;E2F1..5:0.0104893779391;OCT4_SOX2{dimer}:-0.00684019412135;TAL1_TCF{3,4,12}:-0.00708369581507;FOXA2:-0.0114133585854;LMO2:-0.0472416662137;STAT5{A,B}:-0.0885020389395;EVI1:-0.112572731665;NANOG:-0.157777057954;POU3F1..4:-0.192515812383;NFE2L1:-0.229652872476;HMGA1,2:-0.238892951814;TOPORS:-0.262004422143;NHLH1,2:-0.264914172921;HBP1_HMGB_SSRP1_UBTF:-0.290295818601;HLF:-0.304341505291;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.314068691685;HOXA9_MEIS1:-0.326266658261;NFY{A,B,C}:-0.334308139949;SMAD1..7,9:-0.340653727555;GFI1:-0.344847543444;HOX{A6,A7,B6,B7}:-0.363546051543;ZNF143:-0.380107268865;FOSL2:-0.391823699827;NR5A1,2:-0.39698317246;MYFfamily:-0.398145455642;FOS_FOS{B,L1}_JUN{B,D}:-0.413607991859;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.423685627417;HNF4A_NR2F1,2:-0.424720353521;CEBPA,B_DDIT3:-0.458956222861;FOXM1:-0.46968089626;PRRX1,2:-0.481004948661;HNF1A:-0.510399507829;GLI1..3:-0.517519260675;BACH2:-0.521007154921;GCM1,2:-0.523281426783;STAT2,4,6:-0.527393764694;ALX4:-0.531950764984;RREB1:-0.555882036208;DBP:-0.567992254189;ARID5B:-0.571837428912;RBPJ:-0.57799719269;NFE2:-0.583852592566;AR:-0.593990601149;ZNF148:-0.632175134674;SRF:-0.651614187301;TBX4,5:-0.666745569366;FOXP3:-0.670151048552;ZNF423:-0.672626668837;HES1:-0.691556813037;PAX8:-0.705834801317;GFI1B:-0.794201934642;NFE2L2:-0.818078379077;EGR1..3:-0.838983190504;ADNP_IRX_SIX_ZHX:-0.839051106226;PRDM1:-0.863525718404;MEF2{A,B,C,D}:-0.869722626503;SOX{8,9,10}:-0.883758145725;FOXD3:-0.883846625297;LHX3,4:-0.899833839857;MED-1{core}:-0.901867254031;PAX5:-0.948413462557;GATA4:-0.980293480829;bHLH_family:-0.991907596039;ZFP161:-0.996567868039;MYBL2:-0.998277733425;ZNF238:-1.00218588089;HOX{A5,B5}:-1.01482244992;UFEwm:-1.04524604819;TP53:-1.07983171047;MZF1:-1.10390498183;NR1H4:-1.12026925765;REST:-1.1546524877;TFAP4:-1.18907347726;ONECUT1,2:-1.1897615231;SOX17:-1.19777073195;NKX2-3_NKX2-5:-1.2063253697;TFDP1:-1.20859810498;ZIC1..3:-1.22035281828;MTF1:-1.22834588246;NR3C1:-1.22980197949;TFCP2:-1.24488402827;ZBTB6:-1.24750598377;CDC5L:-1.26936013327;MTE{core}:-1.27596159123;TEF:-1.3337837118;RXRA_VDR{dimer}:-1.3456589231;POU5F1:-1.36047589294;PATZ1:-1.36629887393;ESR1:-1.49564075386;MAZ:-1.52888446894;KLF4:-1.54984592255;POU6F1:-1.56260475298;GTF2I:-1.58153740892;TLX1..3_NFIC{dimer}:-1.61442808929;TEAD1:-1.66131364376;TBP:-1.7014960328;NKX3-2:-1.74125511205;EN1,2:-1.77034797684;PPARG:-1.78115194498;HSF1,2:-1.78551539278;GZF1:-1.84464018231;TFAP2B:-1.85311743162;HIC1:-1.86794042088;TFAP2{A,C}:-1.87593895048;EBF1:-1.88200491688;ESRRA:-1.8895566011;FOXL1:-1.91728621445;HOX{A4,D4}:-1.92333378547;NR6A1:-1.92505675672;RXR{A,B,G}:-1.93406471792;GTF2A1,2:-1.94448165266;XCPE1{core}:-1.95632916046;SP1:-2.05321470415;PAX1,9:-2.05669249766;XBP1:-2.33716056924;IKZF1:-2.50824379873
 
|top_motifs=PAX3,7:3.59917875098;CDX1,2,4:3.21549776583;BPTF:2.68933796228;FOX{D1,D2}:2.57798247449;RUNX1..3:2.54643345197;ELF1,2,4:2.54100164665;FOX{F1,F2,J1}:2.27790572213;CREB1:2.26967429553;PDX1:2.13680482473;ATF5_CREB3:2.01434157063;TLX2:1.99863033613;ZBTB16:1.84504023859;DMAP1_NCOR{1,2}_SMARC:1.81826764414;FOXO1,3,4:1.80028506179;ETS1,2:1.77456370026;PAX4:1.76130531127;RFX2..5_RFXANK_RFXAP:1.74617034312;ATF4:1.7245244382;RORA:1.68044124533;HMX1:1.58662416223;FOX{I1,J2}:1.55336911834;FOXN1:1.4727691055;IRF1,2:1.36951696514;T:1.34659416608;SPI1:1.28999616846;TGIF1:1.13426215305;PBX1:1.07173324218;JUN:1.0686420514;NKX6-1,2:1.05783219327;ELK1,4_GABP{A,B1}:1.05375947798;GATA6:1.00964416322;PAX2:0.891524745416;SPIB:0.886432937711;YY1:0.864449000212;SPZ1:0.832913691865;CUX2:0.785157026557;NANOG{mouse}:0.727285567298;CRX:0.715689746267;ATF2:0.703921889911;IRF7:0.677229251304;ALX1:0.664125123582;RFX1:0.644627423643;NKX3-1:0.585884553224;BREu{core}:0.584687751275;STAT1,3:0.578522392426;SNAI1..3:0.569840757957;IKZF2:0.552028132024;POU1F1:0.548770031596;MYOD1:0.52409253041;EP300:0.515460985293;NFIL3:0.509117256023;NFIX:0.499804512748;ZEB1:0.461918721921;NFATC1..3:0.454713872023;LEF1_TCF7_TCF7L1,2:0.420683717806;ATF6:0.392308054887;NFKB1_REL_RELA:0.371977699581;SOX2:0.341078589577;FOXQ1:0.334736668761;FOXP1:0.289220733631;MYB:0.272858964418;PAX6:0.259730977229;SREBF1,2:0.233320755135;AHR_ARNT_ARNT2:0.19583139868;MAFB:0.181379700397;HAND1,2:0.180932361447;PITX1..3:0.175832147583;SOX5:0.166914951232;NKX2-2,8:0.130382814309;AIRE:0.106411946215;VSX1,2:0.0984184676811;ZNF384:0.0664195150959;NKX2-1,4:0.038606154803;NRF1:0.0382788187723;POU2F1..3:0.0257674908014;HIF1A:0.0179790330385;E2F1..5:0.0104893779391;OCT4_SOX2{dimer}:-0.00684019412135;TAL1_TCF{3,4,12}:-0.00708369581507;FOXA2:-0.0114133585854;LMO2:-0.0472416662137;STAT5{A,B}:-0.0885020389395;EVI1:-0.112572731665;NANOG:-0.157777057954;POU3F1..4:-0.192515812383;NFE2L1:-0.229652872476;HMGA1,2:-0.238892951814;TOPORS:-0.262004422143;NHLH1,2:-0.264914172921;HBP1_HMGB_SSRP1_UBTF:-0.290295818601;HLF:-0.304341505291;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.314068691685;HOXA9_MEIS1:-0.326266658261;NFY{A,B,C}:-0.334308139949;SMAD1..7,9:-0.340653727555;GFI1:-0.344847543444;HOX{A6,A7,B6,B7}:-0.363546051543;ZNF143:-0.380107268865;FOSL2:-0.391823699827;NR5A1,2:-0.39698317246;MYFfamily:-0.398145455642;FOS_FOS{B,L1}_JUN{B,D}:-0.413607991859;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.423685627417;HNF4A_NR2F1,2:-0.424720353521;CEBPA,B_DDIT3:-0.458956222861;FOXM1:-0.46968089626;PRRX1,2:-0.481004948661;HNF1A:-0.510399507829;GLI1..3:-0.517519260675;BACH2:-0.521007154921;GCM1,2:-0.523281426783;STAT2,4,6:-0.527393764694;ALX4:-0.531950764984;RREB1:-0.555882036208;DBP:-0.567992254189;ARID5B:-0.571837428912;RBPJ:-0.57799719269;NFE2:-0.583852592566;AR:-0.593990601149;ZNF148:-0.632175134674;SRF:-0.651614187301;TBX4,5:-0.666745569366;FOXP3:-0.670151048552;ZNF423:-0.672626668837;HES1:-0.691556813037;PAX8:-0.705834801317;GFI1B:-0.794201934642;NFE2L2:-0.818078379077;EGR1..3:-0.838983190504;ADNP_IRX_SIX_ZHX:-0.839051106226;PRDM1:-0.863525718404;MEF2{A,B,C,D}:-0.869722626503;SOX{8,9,10}:-0.883758145725;FOXD3:-0.883846625297;LHX3,4:-0.899833839857;MED-1{core}:-0.901867254031;PAX5:-0.948413462557;GATA4:-0.980293480829;bHLH_family:-0.991907596039;ZFP161:-0.996567868039;MYBL2:-0.998277733425;ZNF238:-1.00218588089;HOX{A5,B5}:-1.01482244992;UFEwm:-1.04524604819;TP53:-1.07983171047;MZF1:-1.10390498183;NR1H4:-1.12026925765;REST:-1.1546524877;TFAP4:-1.18907347726;ONECUT1,2:-1.1897615231;SOX17:-1.19777073195;NKX2-3_NKX2-5:-1.2063253697;TFDP1:-1.20859810498;ZIC1..3:-1.22035281828;MTF1:-1.22834588246;NR3C1:-1.22980197949;TFCP2:-1.24488402827;ZBTB6:-1.24750598377;CDC5L:-1.26936013327;MTE{core}:-1.27596159123;TEF:-1.3337837118;RXRA_VDR{dimer}:-1.3456589231;POU5F1:-1.36047589294;PATZ1:-1.36629887393;ESR1:-1.49564075386;MAZ:-1.52888446894;KLF4:-1.54984592255;POU6F1:-1.56260475298;GTF2I:-1.58153740892;TLX1..3_NFIC{dimer}:-1.61442808929;TEAD1:-1.66131364376;TBP:-1.7014960328;NKX3-2:-1.74125511205;EN1,2:-1.77034797684;PPARG:-1.78115194498;HSF1,2:-1.78551539278;GZF1:-1.84464018231;TFAP2B:-1.85311743162;HIC1:-1.86794042088;TFAP2{A,C}:-1.87593895048;EBF1:-1.88200491688;ESRRA:-1.8895566011;FOXL1:-1.91728621445;HOX{A4,D4}:-1.92333378547;NR6A1:-1.92505675672;RXR{A,B,G}:-1.93406471792;GTF2A1,2:-1.94448165266;XCPE1{core}:-1.95632916046;SP1:-2.05321470415;PAX1,9:-2.05669249766;XBP1:-2.33716056924;IKZF1:-2.50824379873
 
|xref=
 
|xref=
 +
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11908-125F9;search_select_hide=table117:FF:11908-125F9
 
}}
 
}}

Latest revision as of 09:28, 4 June 2020

Name:CD4+CD25+CD45RA- memory regulatory T cells, donor3
Species:Human (Homo sapiens)
Library ID:CNhs13538
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexmale
age23
cell typeT cell
cell lineNA
companyNA
collaborationMichael Rehli (University of Regensberg)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number37-38
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005127
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13538 CAGE DRX008186 DRR009058
Accession ID Hg19

Library idBAMCTSS
CNhs13538 DRZ000483 DRZ001868
Accession ID Hg38

Library idBAMCTSS
CNhs13538 DRZ011833 DRZ013218
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
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C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs13538

Jaspar motif P-value
MA0002.2 2.51936e-6
MA0003.1 0.741
MA0004.1 0.867
MA0006.1 0.229
MA0007.1 0.814
MA0009.1 0.0557
MA0014.1 0.971
MA0017.1 0.282
MA0018.2 7.00442e-5
MA0019.1 0.798
MA0024.1 0.653
MA0025.1 0.549
MA0027.1 0.77
MA0028.1 2.95516e-4
MA0029.1 0.155
MA0030.1 0.0448
MA0031.1 0.00341
MA0035.2 0.152
MA0038.1 0.0654
MA0039.2 0.738
MA0040.1 0.64
MA0041.1 0.46
MA0042.1 0.632
MA0043.1 0.125
MA0046.1 0.186
MA0047.2 0.0988
MA0048.1 0.54
MA0050.1 6.58335e-9
MA0051.1 0.00129
MA0052.1 0.00363
MA0055.1 0.626
MA0057.1 0.571
MA0058.1 0.731
MA0059.1 0.533
MA0060.1 0.0549
MA0061.1 0.01
MA0062.2 2.44978e-14
MA0065.2 0.153
MA0066.1 0.143
MA0067.1 0.03
MA0068.1 0.114
MA0069.1 0.89
MA0070.1 0.58
MA0071.1 0.981
MA0072.1 0.175
MA0073.1 0.943
MA0074.1 0.377
MA0076.1 2.78137e-6
MA0077.1 0.0167
MA0078.1 0.625
MA0079.2 0.276
MA0080.2 4.10713e-11
MA0081.1 0.0327
MA0083.1 0.045
MA0084.1 0.41
MA0087.1 0.537
MA0088.1 0.387
MA0090.1 1.09531e-4
MA0091.1 0.654
MA0092.1 0.944
MA0093.1 0.949
MA0099.2 0.0099
MA0100.1 0.472
MA0101.1 0.776
MA0102.2 0.684
MA0103.1 0.147
MA0104.2 0.212
MA0105.1 2.72254e-6
MA0106.1 0.367
MA0107.1 0.935
MA0108.2 2.05801e-10
MA0111.1 0.0937
MA0112.2 0.272
MA0113.1 0.626
MA0114.1 0.453
MA0115.1 0.576
MA0116.1 4.75632e-5
MA0117.1 0.153
MA0119.1 0.969
MA0122.1 0.631
MA0124.1 0.364
MA0125.1 0.282
MA0131.1 0.241
MA0135.1 0.272
MA0136.1 8.58148e-22
MA0137.2 0.859
MA0138.2 0.334
MA0139.1 0.0275
MA0140.1 0.0833
MA0141.1 0.531
MA0142.1 0.389
MA0143.1 0.506
MA0144.1 0.885
MA0145.1 0.511
MA0146.1 0.66
MA0147.1 0.179
MA0148.1 0.417
MA0149.1 0.11
MA0150.1 0.862
MA0152.1 0.0144
MA0153.1 0.2
MA0154.1 0.035
MA0155.1 0.438
MA0156.1 9.58504e-17
MA0157.1 0.0022
MA0159.1 0.217
MA0160.1 0.982
MA0162.1 0.789
MA0163.1 1.45754e-7
MA0164.1 0.628
MA0258.1 0.284
MA0259.1 0.302



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs13538

Novel motif P-value
1 0.194
10 0.00718
100 0.766
101 0.0728
102 0.889
103 0.297
104 0.889
105 0.432
106 0.551
107 0.03
108 0.733
109 0.192
11 0.154
110 0.694
111 0.318
112 0.462
113 0.232
114 0.265
115 0.372
116 0.55
117 0.00418
118 0.338
119 0.916
12 0.799
120 0.996
121 0.638
122 0.63
123 0.00101
124 0.321
125 0.94
126 0.434
127 0.742
128 0.851
129 0.985
13 0.549
130 0.307
131 0.786
132 0.329
133 0.696
134 0.733
135 0.641
136 0.896
137 0.0624
138 0.159
139 0.047
14 0.371
140 0.104
141 0.354
142 0.503
143 0.0061
144 0.982
145 0.511
146 0.652
147 0.053
148 0.0568
149 0.594
15 0.0983
150 0.797
151 0.569
152 0.255
153 0.653
154 0.561
155 0.017
156 0.524
157 0.311
158 0.00765
159 0.934
16 0.946
160 0.625
161 0.71
162 0.0532
163 0.74
164 0.0735
165 0.247
166 0.445
167 0.175
168 0.718
169 0.998
17 0.931
18 0.605
19 0.339
2 0.64
20 0.659
21 0.729
22 0.639
23 0.736
24 0.727
25 0.0531
26 0.271
27 0.416
28 0.478
29 0.0123
3 0.118
30 0.157
31 0.883
32 0.225
33 0.229
34 0.437
35 0.136
36 0.0256
37 0.204
38 0.987
39 0.352
4 0.801
40 0.566
41 0.137
42 0.0974
43 0.365
44 0.53
45 0.391
46 0.209
47 0.101
48 0.242
49 0.0828
5 0.333
50 0.441
51 0.64
52 0.363
53 0.452
54 0.872
55 0.627
56 0.837
57 0.59
58 0.0791
59 0.86
6 0.987
60 0.434
61 0.118
62 0.057
63 0.86
64 0.416
65 0.925
66 0.835
67 0.951
68 0.992
69 0.896
7 0.221
70 0.038
71 0.0302
72 0.0642
73 0.866
74 0.384
75 0.0243
76 0.159
77 0.102
78 0.272
79 0.829
8 0.967
80 0.029
81 0.282
82 0.0886
83 0.771
84 0.696
85 0.773
86 0.108
87 0.519
88 0.775
89 0.197
9 0.957
90 0.00969
91 0.489
92 0.31
93 0.561
94 0.118
95 0.132
96 0.122
97 0.338
98 0.0972
99 3.32198e-4



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs13538


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

NA