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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000479,UBERON:0001062,UBERON:0002384
|DRA_sample_Accession=CAGE@SAMD00005127
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000037,CL:0000048,CL:0000051,CL:0000063,CL:0000084,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000542,CL:0000548,CL:0000566,CL:0000624,CL:0000723,CL:0000738,CL:0000789,CL:0000790,CL:0000791,CL:0000792,CL:0000815,CL:0000827,CL:0000837,CL:0000838,CL:0000898,CL:0000988,CL:0002031,CL:0002032,CL:0002087,CL:0002320,CL:0002371,CL:0002419,CL:0002420,CL:0002677
|accession_numbers=CAGE;DRX008186;DRR009058;DRZ000483;DRZ001868;DRZ011833;DRZ013218
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001
|comment=Changed from previous label. TODO: full classification
|comment=Changed from previous label. TODO: full classification
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|
|expression_enrichment_score
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 35: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%252c%2520donor3.CNhs13538.11908-125F9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%252c%2520donor3.CNhs13538.11908-125F9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%252c%2520donor3.CNhs13538.11908-125F9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%252c%2520donor3.CNhs13538.11908-125F9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%252c%2520donor3.CNhs13538.11908-125F9.hg38.nobarcode.ctss.bed.gz
|id=FF:11908-125F9
|id=FF:11908-125F9
|is_a=EFO:0002091;;FF:0000002;;FF:0000210
|is_a=EFO:0002091;;FF:0000002;;FF:0000210
|is_obsolete=
|library_id=CNhs13538
|library_id_phase_based=2:CNhs13538
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11908
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11908
|name=CD4+CD25+CD45RA- memory regulatory T cells, donor3
|name=CD4+CD25+CD45RA- memory regulatory T cells, donor3
|namespace=
|namespace=
Line 42: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs13538,LSID1029,release012,COMPLETED
|profile_hcage=CNhs13538,LSID1029,release012,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=125
|rna_box=125
|rna_catalog_number=
|rna_catalog_number=
Line 57: Line 78:
|rna_weight_ug=1.9541
|rna_weight_ug=1.9541
|sample_age=23
|sample_age=23
|sample_category=primary cells
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|sample_cell_catalog=
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|sample_cell_line=
Line 69: Line 91:
|sample_ethnicity=
|sample_ethnicity=
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.17013554963162e-232!GO:0043227;membrane-bound organelle;4.26004195261869e-198!GO:0043231;intracellular membrane-bound organelle;9.89660062349593e-198!GO:0043226;organelle;3.81631544207299e-189!GO:0043229;intracellular organelle;1.78566121468516e-188!GO:0005737;cytoplasm;2.40202842997767e-132!GO:0044422;organelle part;5.68554205459085e-119!GO:0044446;intracellular organelle part;1.77959576010537e-117!GO:0005634;nucleus;5.20690955250666e-111!GO:0043170;macromolecule metabolic process;9.65999287576767e-100!GO:0032991;macromolecular complex;2.23442420435141e-98!GO:0044237;cellular metabolic process;2.43779854433977e-96!GO:0044238;primary metabolic process;2.80038886138776e-93!GO:0044444;cytoplasmic part;4.15114860783597e-86!GO:0030529;ribonucleoprotein complex;2.39758228711327e-84!GO:0003723;RNA binding;8.02493746384028e-83!GO:0044428;nuclear part;1.09779843868398e-82!GO:0043283;biopolymer metabolic process;7.5702719519087e-71!GO:0043233;organelle lumen;7.58560008736349e-68!GO:0031974;membrane-enclosed lumen;7.58560008736349e-68!GO:0010467;gene expression;7.35252500134967e-63!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.56827552544105e-60!GO:0005515;protein binding;3.48411450036813e-56!GO:0006396;RNA processing;5.85753237247708e-56!GO:0031981;nuclear lumen;7.52483282446728e-51!GO:0006412;translation;1.0679041636602e-50!GO:0016071;mRNA metabolic process;9.38262042205696e-50!GO:0043234;protein complex;2.06003541927339e-49!GO:0005739;mitochondrion;3.01526251046592e-49!GO:0033036;macromolecule localization;5.19099925332383e-49!GO:0003676;nucleic acid binding;1.36162814789516e-46!GO:0019538;protein metabolic process;3.39766249420259e-46!GO:0015031;protein transport;3.6736038271264e-46!GO:0045184;establishment of protein localization;6.1036515425271e-45!GO:0008104;protein localization;7.84593604068568e-45!GO:0005840;ribosome;1.99113185819253e-44!GO:0044267;cellular protein metabolic process;1.0497632509562e-43!GO:0006397;mRNA processing;8.36308994618591e-43!GO:0008380;RNA splicing;1.52682328309756e-42!GO:0044260;cellular macromolecule metabolic process;1.63197137846705e-42!GO:0003735;structural constituent of ribosome;2.25940087095865e-39!GO:0009059;macromolecule biosynthetic process;3.87820213995949e-38!GO:0006259;DNA metabolic process;1.12869167328899e-35!GO:0016070;RNA metabolic process;1.2849623418039e-35!GO:0033279;ribosomal subunit;4.22918395218734e-35!GO:0031090;organelle membrane;4.75547627191728e-35!GO:0031967;organelle envelope;4.75547627191728e-35!GO:0044429;mitochondrial part;8.17717703775262e-35!GO:0031975;envelope;9.80176370518667e-35!GO:0046907;intracellular transport;1.39351216194461e-33!GO:0005654;nucleoplasm;8.74607342503319e-33!GO:0005829;cytosol;4.04598327647441e-32!GO:0005681;spliceosome;9.50304150468945e-32!GO:0006886;intracellular protein transport;1.11317480693398e-31!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.55911947078993e-31!GO:0016043;cellular component organization and biogenesis;1.22471570651185e-30!GO:0065003;macromolecular complex assembly;1.78980991883544e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.57756138187475e-29!GO:0044249;cellular biosynthetic process;3.75863584933818e-28!GO:0009058;biosynthetic process;3.75362669155435e-27!GO:0000166;nucleotide binding;3.97078829652222e-27!GO:0022607;cellular component assembly;4.20754333688686e-27!GO:0006996;organelle organization and biogenesis;1.80972750147973e-26!GO:0044451;nucleoplasm part;5.94165891242922e-26!GO:0044445;cytosolic part;9.18243308276436e-26!GO:0006512;ubiquitin cycle;7.25917072366575e-25!GO:0051641;cellular localization;4.7060154113357e-24!GO:0051649;establishment of cellular localization;7.12471246425519e-24!GO:0043228;non-membrane-bound organelle;6.9614338314912e-23!GO:0043232;intracellular non-membrane-bound organelle;6.9614338314912e-23!GO:0005740;mitochondrial envelope;1.70257625733403e-22!GO:0031966;mitochondrial membrane;7.61965827908451e-22!GO:0019866;organelle inner membrane;2.97501625289043e-21!GO:0022618;protein-RNA complex assembly;3.89188636098046e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.34104797216365e-21!GO:0017111;nucleoside-triphosphatase activity;5.59444806004903e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;6.28797958940784e-21!GO:0016462;pyrophosphatase activity;6.37280489510752e-21!GO:0016874;ligase activity;2.89654502918419e-20!GO:0006974;response to DNA damage stimulus;1.04518625233174e-19!GO:0032553;ribonucleotide binding;2.98857767333535e-19!GO:0032555;purine ribonucleotide binding;2.98857767333535e-19!GO:0012501;programmed cell death;3.46256215354315e-19!GO:0006915;apoptosis;3.67251373591113e-19!GO:0005743;mitochondrial inner membrane;3.71827440298841e-19!GO:0044265;cellular macromolecule catabolic process;1.04246551959703e-18!GO:0005730;nucleolus;1.57687322916997e-18!GO:0017076;purine nucleotide binding;1.62176634469087e-18!GO:0051276;chromosome organization and biogenesis;1.8364839239665e-18!GO:0008219;cell death;1.88278051149978e-18!GO:0016265;death;1.88278051149978e-18!GO:0015935;small ribosomal subunit;3.25148597229661e-18!GO:0043412;biopolymer modification;3.48311866426858e-18!GO:0008134;transcription factor binding;6.43920858560144e-18!GO:0006119;oxidative phosphorylation;6.95365430592477e-18!GO:0006605;protein targeting;8.00735277413065e-18!GO:0015934;large ribosomal subunit;9.88151353492209e-18!GO:0008135;translation factor activity, nucleic acid binding;1.95056199096612e-17!GO:0016604;nuclear body;2.02520292607734e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;2.79853141299279e-17!GO:0006281;DNA repair;2.90883843172375e-17!GO:0019941;modification-dependent protein catabolic process;2.92965883778012e-17!GO:0043632;modification-dependent macromolecule catabolic process;2.92965883778012e-17!GO:0006325;establishment and/or maintenance of chromatin architecture;3.42086433335194e-17!GO:0005524;ATP binding;4.24613431323155e-17!GO:0006511;ubiquitin-dependent protein catabolic process;5.71040640364263e-17!GO:0044257;cellular protein catabolic process;7.13363396021686e-17!GO:0007049;cell cycle;1.16731920012664e-16!GO:0006323;DNA packaging;1.59208618615693e-16!GO:0043285;biopolymer catabolic process;1.66237619447729e-16!GO:0044455;mitochondrial membrane part;1.78017371933107e-16!GO:0016887;ATPase activity;2.39200959280558e-16!GO:0032559;adenyl ribonucleotide binding;2.85472371577458e-16!GO:0042623;ATPase activity, coupled;3.95628245698969e-16!GO:0006913;nucleocytoplasmic transport;6.38020976460514e-16!GO:0006464;protein modification process;1.03918148988733e-15!GO:0051169;nuclear transport;1.08503711619053e-15!GO:0005694;chromosome;2.07227298656017e-15!GO:0030554;adenyl nucleotide binding;2.10965840364605e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.91439121979462e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;4.14902339257134e-15!GO:0000375;RNA splicing, via transesterification reactions;4.14902339257134e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.14902339257134e-15!GO:0006457;protein folding;4.3826987048441e-15!GO:0031980;mitochondrial lumen;4.61813668746219e-15!GO:0005759;mitochondrial matrix;4.61813668746219e-15!GO:0009057;macromolecule catabolic process;6.10932728025962e-15!GO:0016607;nuclear speck;1.02116077136875e-14!GO:0043687;post-translational protein modification;1.1230628206987e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.60463207116593e-14!GO:0000502;proteasome complex (sensu Eukaryota);2.51553288073085e-14!GO:0004386;helicase activity;4.67045420184551e-14!GO:0042981;regulation of apoptosis;6.12208219442371e-14!GO:0050794;regulation of cellular process;6.40766107852818e-14!GO:0043067;regulation of programmed cell death;9.49151407408928e-14!GO:0006413;translational initiation;1.11335178987608e-13!GO:0003743;translation initiation factor activity;1.19450325092103e-13!GO:0005746;mitochondrial respiratory chain;3.07089464193682e-13!GO:0005635;nuclear envelope;3.26924666267705e-13!GO:0012505;endomembrane system;3.42140225503288e-13!GO:0044427;chromosomal part;5.34445284468521e-13!GO:0030163;protein catabolic process;7.64710451262934e-13!GO:0031965;nuclear membrane;1.26804751339441e-12!GO:0022402;cell cycle process;1.79124861768681e-12!GO:0008026;ATP-dependent helicase activity;2.79595358283269e-12!GO:0016568;chromatin modification;3.79435440067423e-12!GO:0019222;regulation of metabolic process;4.42138946165658e-12!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.48761245428644e-12!GO:0050136;NADH dehydrogenase (quinone) activity;6.10996588875755e-12!GO:0003954;NADH dehydrogenase activity;6.10996588875755e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.10996588875755e-12!GO:0044248;cellular catabolic process;6.85766878238381e-12!GO:0009719;response to endogenous stimulus;6.91613003152592e-12!GO:0044453;nuclear membrane part;1.27988863314216e-11!GO:0003712;transcription cofactor activity;1.64904224492982e-11!GO:0006333;chromatin assembly or disassembly;2.20570320006585e-11!GO:0008639;small protein conjugating enzyme activity;2.91170993780279e-11!GO:0065004;protein-DNA complex assembly;3.14813789491477e-11!GO:0006446;regulation of translational initiation;3.5396514638476e-11!GO:0051082;unfolded protein binding;3.69239274116031e-11!GO:0004842;ubiquitin-protein ligase activity;4.63313567884675e-11!GO:0048193;Golgi vesicle transport;4.88828714824163e-11!GO:0050657;nucleic acid transport;5.49327288802787e-11!GO:0051236;establishment of RNA localization;5.49327288802787e-11!GO:0050658;RNA transport;5.49327288802787e-11!GO:0006403;RNA localization;5.58513917528989e-11!GO:0042254;ribosome biogenesis and assembly;5.71816386625406e-11!GO:0048770;pigment granule;8.93355281510223e-11!GO:0042470;melanosome;8.93355281510223e-11!GO:0042775;organelle ATP synthesis coupled electron transport;9.13596755384737e-11!GO:0042773;ATP synthesis coupled electron transport;9.13596755384737e-11!GO:0017038;protein import;9.82888691139196e-11!GO:0019787;small conjugating protein ligase activity;1.06239054192126e-10!GO:0031323;regulation of cellular metabolic process;1.97760698620159e-10!GO:0005761;mitochondrial ribosome;2.63982848620453e-10!GO:0000313;organellar ribosome;2.63982848620453e-10!GO:0030964;NADH dehydrogenase complex (quinone);2.95123175372898e-10!GO:0045271;respiratory chain complex I;2.95123175372898e-10!GO:0005747;mitochondrial respiratory chain complex I;2.95123175372898e-10!GO:0005643;nuclear pore;3.95012512361284e-10!GO:0051726;regulation of cell cycle;4.01388065551352e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;7.63606575478863e-10!GO:0000074;regulation of progression through cell cycle;8.06180132373624e-10!GO:0006350;transcription;1.07357463667291e-09!GO:0000785;chromatin;1.54825989508331e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.83748487169995e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.1829261096074e-09!GO:0051028;mRNA transport;3.06856884682272e-09!GO:0008270;zinc ion binding;3.99624170629885e-09!GO:0043566;structure-specific DNA binding;4.25988456275596e-09!GO:0005794;Golgi apparatus;5.53935644082571e-09!GO:0065002;intracellular protein transport across a membrane;6.91076943783034e-09!GO:0019829;cation-transporting ATPase activity;8.39065110036326e-09!GO:0003713;transcription coactivator activity;9.20459003319691e-09!GO:0008565;protein transporter activity;9.32103972295333e-09!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.03343225902397e-08!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.07573405919562e-08!GO:0010468;regulation of gene expression;1.10580666651984e-08!GO:0016787;hydrolase activity;1.26013973260356e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.33418610011545e-08!GO:0050789;regulation of biological process;1.38319134038001e-08!GO:0007243;protein kinase cascade;1.49463824573446e-08!GO:0016881;acid-amino acid ligase activity;1.74562450754635e-08!GO:0046930;pore complex;2.41633801423321e-08!GO:0051186;cofactor metabolic process;2.62562340436633e-08!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.06783769829745e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.80206420387968e-08!GO:0051170;nuclear import;3.96305005296166e-08!GO:0030532;small nuclear ribonucleoprotein complex;4.19027913404803e-08!GO:0006399;tRNA metabolic process;4.69554608489639e-08!GO:0005768;endosome;4.69794050398385e-08!GO:0003697;single-stranded DNA binding;6.84039162676439e-08!GO:0006793;phosphorus metabolic process;6.84039162676439e-08!GO:0006796;phosphate metabolic process;6.84039162676439e-08!GO:0006606;protein import into nucleus;7.90576417394387e-08!GO:0006366;transcription from RNA polymerase II promoter;8.71617331971566e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;8.89709402806849e-08!GO:0032446;protein modification by small protein conjugation;8.94453497204206e-08!GO:0006334;nucleosome assembly;1.1612735126066e-07!GO:0016563;transcription activator activity;1.17139492059899e-07!GO:0016072;rRNA metabolic process;1.32687634986897e-07!GO:0009259;ribonucleotide metabolic process;1.34293091412584e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.57683776002056e-07!GO:0031497;chromatin assembly;1.63633244481762e-07!GO:0032774;RNA biosynthetic process;1.68333409647364e-07!GO:0006364;rRNA processing;1.86797817372285e-07!GO:0016192;vesicle-mediated transport;1.87770978970235e-07!GO:0006260;DNA replication;1.953863283987e-07!GO:0005839;proteasome core complex (sensu Eukaryota);1.98591129671173e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.08226033297815e-07!GO:0006351;transcription, DNA-dependent;2.22912253931348e-07!GO:0000278;mitotic cell cycle;2.86063346977451e-07!GO:0016567;protein ubiquitination;3.19896620729488e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.53019810622192e-07!GO:0043069;negative regulation of programmed cell death;3.78212977320966e-07!GO:0048523;negative regulation of cellular process;4.36019195495725e-07!GO:0006916;anti-apoptosis;4.98289324979068e-07!GO:0016779;nucleotidyltransferase activity;5.0123230996896e-07!GO:0000245;spliceosome assembly;5.07650038765452e-07!GO:0006163;purine nucleotide metabolic process;5.39514107027406e-07!GO:0009260;ribonucleotide biosynthetic process;5.42179403498e-07!GO:0006164;purine nucleotide biosynthetic process;5.50267247874973e-07!GO:0043066;negative regulation of apoptosis;5.51970636961187e-07!GO:0000151;ubiquitin ligase complex;5.58656530112202e-07!GO:0004298;threonine endopeptidase activity;5.83449497207375e-07!GO:0051168;nuclear export;7.0875236007598e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.71080221369585e-07!GO:0045449;regulation of transcription;8.04663635674457e-07!GO:0051246;regulation of protein metabolic process;9.2161483431214e-07!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;9.84104427728032e-07!GO:0015399;primary active transmembrane transporter activity;9.84104427728032e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.00110592681967e-06!GO:0065009;regulation of a molecular function;1.01997204970747e-06!GO:0015986;ATP synthesis coupled proton transport;1.10772086973326e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.10772086973326e-06!GO:0019899;enzyme binding;1.22768793580122e-06!GO:0003724;RNA helicase activity;1.33247242503676e-06!GO:0031324;negative regulation of cellular metabolic process;1.33823288231421e-06!GO:0009150;purine ribonucleotide metabolic process;1.50984837299197e-06!GO:0009152;purine ribonucleotide biosynthetic process;1.51864107407609e-06!GO:0016310;phosphorylation;1.54670925996551e-06!GO:0016564;transcription repressor activity;1.89167914824138e-06!GO:0006732;coenzyme metabolic process;1.95915539968236e-06!GO:0006917;induction of apoptosis;2.24503752069564e-06!GO:0043065;positive regulation of apoptosis;2.59819988866242e-06!GO:0016469;proton-transporting two-sector ATPase complex;3.25146707444431e-06!GO:0005813;centrosome;3.46118431611012e-06!GO:0046914;transition metal ion binding;3.49437693415643e-06!GO:0012502;induction of programmed cell death;3.52669264985918e-06!GO:0016363;nuclear matrix;3.5844529580654e-06!GO:0045786;negative regulation of progression through cell cycle;3.58714921209515e-06!GO:0009060;aerobic respiration;3.58714921209515e-06!GO:0009056;catabolic process;3.68809138670358e-06!GO:0043068;positive regulation of programmed cell death;3.87905826155636e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.99902916596824e-06!GO:0004812;aminoacyl-tRNA ligase activity;3.99902916596824e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.99902916596824e-06!GO:0044432;endoplasmic reticulum part;4.53536487184905e-06!GO:0006754;ATP biosynthetic process;5.43729817222032e-06!GO:0006753;nucleoside phosphate metabolic process;5.43729817222032e-06!GO:0005783;endoplasmic reticulum;5.74318551239978e-06!GO:0048519;negative regulation of biological process;6.26545987979092e-06!GO:0043038;amino acid activation;6.46498470467026e-06!GO:0006418;tRNA aminoacylation for protein translation;6.46498470467026e-06!GO:0043039;tRNA aminoacylation;6.46498470467026e-06!GO:0006401;RNA catabolic process;6.74066325145644e-06!GO:0006355;regulation of transcription, DNA-dependent;7.99381404494861e-06!GO:0016740;transferase activity;8.12102469458917e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.59685070630474e-06!GO:0006613;cotranslational protein targeting to membrane;9.12716123618356e-06!GO:0030120;vesicle coat;9.94001048179134e-06!GO:0030662;coated vesicle membrane;9.94001048179134e-06!GO:0065007;biological regulation;1.06140929624202e-05!GO:0005815;microtubule organizing center;1.0808863403347e-05!GO:0006461;protein complex assembly;1.08279409930916e-05!GO:0045259;proton-transporting ATP synthase complex;1.12521627302586e-05!GO:0048475;coated membrane;1.18827137057664e-05!GO:0030117;membrane coat;1.18827137057664e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.24269010019076e-05!GO:0046034;ATP metabolic process;1.25501861189041e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.27326270175855e-05!GO:0009055;electron carrier activity;1.38166023654744e-05!GO:0003677;DNA binding;1.46567096824515e-05!GO:0045333;cellular respiration;1.4685619587351e-05!GO:0009142;nucleoside triphosphate biosynthetic process;1.47168894269752e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.47168894269752e-05!GO:0006402;mRNA catabolic process;1.57489023202858e-05!GO:0006310;DNA recombination;1.69952719985402e-05!GO:0009892;negative regulation of metabolic process;1.90973215253512e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.97199027648718e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.97199027648718e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.03889405790447e-05!GO:0009199;ribonucleoside triphosphate metabolic process;2.04987309516776e-05!GO:0009141;nucleoside triphosphate metabolic process;2.05904359803392e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.66527987572453e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.76282261332658e-05!GO:0009144;purine nucleoside triphosphate metabolic process;2.76282261332658e-05!GO:0007242;intracellular signaling cascade;2.78602235926659e-05!GO:0022403;cell cycle phase;2.89773591672839e-05!GO:0043492;ATPase activity, coupled to movement of substances;2.91914623895552e-05!GO:0007005;mitochondrion organization and biogenesis;2.93550249586933e-05!GO:0005770;late endosome;3.14542996670051e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;3.14700570142773e-05!GO:0005525;GTP binding;3.46631761678977e-05!GO:0008186;RNA-dependent ATPase activity;3.64612200318293e-05!GO:0000087;M phase of mitotic cell cycle;3.76511281273379e-05!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;3.84523140286585e-05!GO:0051188;cofactor biosynthetic process;3.84523140286585e-05!GO:0005789;endoplasmic reticulum membrane;3.97818501503778e-05!GO:0016481;negative regulation of transcription;4.11096793949852e-05!GO:0051301;cell division;4.14403820137309e-05!GO:0006612;protein targeting to membrane;4.25431967290471e-05!GO:0006417;regulation of translation;5.12256911861351e-05!GO:0003690;double-stranded DNA binding;5.76461921320052e-05!GO:0008234;cysteine-type peptidase activity;6.0339047056647e-05!GO:0007067;mitosis;6.47355203847702e-05!GO:0005852;eukaryotic translation initiation factor 3 complex;6.81241047872908e-05!GO:0006099;tricarboxylic acid cycle;7.05156012614553e-05!GO:0046356;acetyl-CoA catabolic process;7.05156012614553e-05!GO:0051427;hormone receptor binding;8.18341913215166e-05!GO:0042110;T cell activation;8.83505060676059e-05!GO:0005793;ER-Golgi intermediate compartment;9.81614912313321e-05!GO:0015630;microtubule cytoskeleton;0.000102404981362035!GO:0006261;DNA-dependent DNA replication;0.000118317989281596!GO:0004004;ATP-dependent RNA helicase activity;0.000118473230230377!GO:0004674;protein serine/threonine kinase activity;0.000142276031372608!GO:0005773;vacuole;0.000154427556171279!GO:0044440;endosomal part;0.00015863140115742!GO:0010008;endosome membrane;0.00015863140115742!GO:0060090;molecular adaptor activity;0.000161614645686872!GO:0006752;group transfer coenzyme metabolic process;0.000167290141138539!GO:0035257;nuclear hormone receptor binding;0.000168472825740283!GO:0006084;acetyl-CoA metabolic process;0.000168593697592786!GO:0016251;general RNA polymerase II transcription factor activity;0.000185394303494086!GO:0031326;regulation of cellular biosynthetic process;0.000188544030225845!GO:0005667;transcription factor complex;0.000202162782045749!GO:0003729;mRNA binding;0.000202162782045749!GO:0005885;Arp2/3 protein complex;0.00020810395075925!GO:0009615;response to virus;0.00020810395075925!GO:0008632;apoptotic program;0.000210298570972649!GO:0043021;ribonucleoprotein binding;0.00022951753582855!GO:0006352;transcription initiation;0.000235110000658448!GO:0044431;Golgi apparatus part;0.000256302518549023!GO:0003924;GTPase activity;0.000277705847414628!GO:0000786;nucleosome;0.000306769063961468!GO:0000323;lytic vacuole;0.000336491487624074!GO:0005764;lysosome;0.000336491487624074!GO:0009108;coenzyme biosynthetic process;0.000344982774452912!GO:0006891;intra-Golgi vesicle-mediated transport;0.000354607261218132!GO:0008168;methyltransferase activity;0.000361242533006693!GO:0043623;cellular protein complex assembly;0.000380756104943436!GO:0006611;protein export from nucleus;0.000386722881512801!GO:0009109;coenzyme catabolic process;0.000407436976840505!GO:0016741;transferase activity, transferring one-carbon groups;0.00040847698039282!GO:0051252;regulation of RNA metabolic process;0.000418741537084109!GO:0005769;early endosome;0.000426541781541925!GO:0003899;DNA-directed RNA polymerase activity;0.000426647560575119!GO:0048522;positive regulation of cellular process;0.000432274949370532!GO:0030384;phosphoinositide metabolic process;0.000454048268154458!GO:0000279;M phase;0.000510110887330281!GO:0051187;cofactor catabolic process;0.000528163475456287!GO:0032561;guanyl ribonucleotide binding;0.00054584925004826!GO:0019001;guanyl nucleotide binding;0.00054584925004826!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000547099217245416!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000552231676899639!GO:0048471;perinuclear region of cytoplasm;0.000601155287668447!GO:0019843;rRNA binding;0.000630469797155977!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000636948541468317!GO:0042802;identical protein binding;0.00065021482437044!GO:0031072;heat shock protein binding;0.000678321734160043!GO:0008654;phospholipid biosynthetic process;0.000738981986284959!GO:0050790;regulation of catalytic activity;0.000782799654760704!GO:0051251;positive regulation of lymphocyte activation;0.000784583131911032!GO:0003714;transcription corepressor activity;0.000786124862559414!GO:0008047;enzyme activator activity;0.000832441314448953!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000839286490413631!GO:0005762;mitochondrial large ribosomal subunit;0.000839858362317246!GO:0000315;organellar large ribosomal subunit;0.000839858362317246!GO:0016197;endosome transport;0.000840891466490552!GO:0006383;transcription from RNA polymerase III promoter;0.000850208078906121!GO:0003678;DNA helicase activity;0.000925145677566977!GO:0006607;NLS-bearing substrate import into nucleus;0.000939986195315809!GO:0009889;regulation of biosynthetic process;0.00108553223696236!GO:0015631;tubulin binding;0.00121942900859206!GO:0019783;small conjugating protein-specific protease activity;0.00123078503028963!GO:0051087;chaperone binding;0.00123544181916451!GO:0006414;translational elongation;0.00134520251669931!GO:0004843;ubiquitin-specific protease activity;0.00160899499546516!GO:0005798;Golgi-associated vesicle;0.0016355904818302!GO:0015992;proton transport;0.00164331795618767!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0018197381515025!GO:0006818;hydrogen transport;0.00185467191982684!GO:0048500;signal recognition particle;0.00190519030321766!GO:0046489;phosphoinositide biosynthetic process;0.00200576669830965!GO:0009967;positive regulation of signal transduction;0.00204860865097806!GO:0000139;Golgi membrane;0.00205009143885071!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00208717207000126!GO:0030518;steroid hormone receptor signaling pathway;0.00223267324063811!GO:0006338;chromatin remodeling;0.00233850430503192!GO:0046649;lymphocyte activation;0.0023748888585142!GO:0006289;nucleotide-excision repair;0.00237686823155683!GO:0050863;regulation of T cell activation;0.00252835596557872!GO:0050870;positive regulation of T cell activation;0.00255718884192004!GO:0006302;double-strand break repair;0.00265934624927066!GO:0004518;nuclease activity;0.00270915641780041!GO:0046966;thyroid hormone receptor binding;0.00273068825800601!GO:0008033;tRNA processing;0.00280953226030128!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00283479479969876!GO:0004221;ubiquitin thiolesterase activity;0.00284573127338844!GO:0006650;glycerophospholipid metabolic process;0.0028860367563628!GO:0008312;7S RNA binding;0.00297440857692874!GO:0004527;exonuclease activity;0.0029775037147845!GO:0006405;RNA export from nucleus;0.00303389958584118!GO:0003746;translation elongation factor activity;0.00311604527389175!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00318319573632458!GO:0019901;protein kinase binding;0.00318578201746426!GO:0005070;SH3/SH2 adaptor activity;0.00321024624339979!GO:0000209;protein polyubiquitination;0.0032754258178565!GO:0008022;protein C-terminus binding;0.00332074268143466!GO:0051249;regulation of lymphocyte activation;0.00332293762893956!GO:0045892;negative regulation of transcription, DNA-dependent;0.00336569817040377!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00338297667986928!GO:0045047;protein targeting to ER;0.00338297667986928!GO:0000314;organellar small ribosomal subunit;0.00339595571250631!GO:0005763;mitochondrial small ribosomal subunit;0.00339595571250631!GO:0050865;regulation of cell activation;0.00345212466059755!GO:0007264;small GTPase mediated signal transduction;0.00348285373747609!GO:0005657;replication fork;0.00348285373747609!GO:0047485;protein N-terminus binding;0.00348285373747609!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00348285373747609!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00348285373747609!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00348285373747609!GO:0019867;outer membrane;0.00354645941212242!GO:0005774;vacuolar membrane;0.00356806546210693!GO:0031902;late endosome membrane;0.00365454251143088!GO:0005637;nuclear inner membrane;0.00365454251143088!GO:0032259;methylation;0.00366169025936377!GO:0043681;protein import into mitochondrion;0.00367719703810286!GO:0051052;regulation of DNA metabolic process;0.0036891333243111!GO:0030521;androgen receptor signaling pathway;0.00378802245064258!GO:0007265;Ras protein signal transduction;0.00380459168301563!GO:0009117;nucleotide metabolic process;0.00389133563005781!GO:0003684;damaged DNA binding;0.00393316122294506!GO:0051090;regulation of transcription factor activity;0.00413636709296864!GO:0005684;U2-dependent spliceosome;0.00426097234291817!GO:0043488;regulation of mRNA stability;0.00430177344353365!GO:0043487;regulation of RNA stability;0.00430177344353365!GO:0043414;biopolymer methylation;0.00435515122101865!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00446739775401853!GO:0022890;inorganic cation transmembrane transporter activity;0.00469827261661126!GO:0030658;transport vesicle membrane;0.00472839976294513!GO:0005741;mitochondrial outer membrane;0.00472839976294513!GO:0008094;DNA-dependent ATPase activity;0.00494037376126239!GO:0044452;nucleolar part;0.00495079779896557!GO:0005765;lysosomal membrane;0.00507103372215542!GO:0046474;glycerophospholipid biosynthetic process;0.00520498449220677!GO:0031968;organelle outer membrane;0.0052673957727592!GO:0019900;kinase binding;0.00537764593006792!GO:0046822;regulation of nucleocytoplasmic transport;0.00549313771936908!GO:0003682;chromatin binding;0.00559082101699296!GO:0016790;thiolester hydrolase activity;0.00559082101699296!GO:0016584;nucleosome positioning;0.00574525141632171!GO:0003711;transcription elongation regulator activity;0.00576204392193844!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00588297879840784!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00614001280795599!GO:0005669;transcription factor TFIID complex;0.00617950366194433!GO:0042101;T cell receptor complex;0.00628527161491932!GO:0030522;intracellular receptor-mediated signaling pathway;0.00643557550148626!GO:0046983;protein dimerization activity;0.00672340747380022!GO:0051539;4 iron, 4 sulfur cluster binding;0.00687640438356425!GO:0003725;double-stranded RNA binding;0.00713784235526489!GO:0005819;spindle;0.00739969566545209!GO:0031625;ubiquitin protein ligase binding;0.00755648350322603!GO:0044437;vacuolar part;0.00768273241565339!GO:0006376;mRNA splice site selection;0.00771126588647598!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00771126588647598!GO:0031124;mRNA 3'-end processing;0.00786466077983587!GO:0000776;kinetochore;0.00798369474965117!GO:0051789;response to protein stimulus;0.00801258824180234!GO:0006986;response to unfolded protein;0.00801258824180234!GO:0000075;cell cycle checkpoint;0.00817033809077535!GO:0008017;microtubule binding;0.00819015918261414!GO:0022415;viral reproductive process;0.00848748384605282!GO:0030118;clathrin coat;0.00957023020861005!GO:0051336;regulation of hydrolase activity;0.00981597272471573!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00982375696273054!GO:0007050;cell cycle arrest;0.0105207686399264!GO:0007006;mitochondrial membrane organization and biogenesis;0.0105475080910024!GO:0030695;GTPase regulator activity;0.0107072927499081!GO:0050811;GABA receptor binding;0.0109244299482131!GO:0016853;isomerase activity;0.0109629850942377!GO:0030660;Golgi-associated vesicle membrane;0.0110422531136573!GO:0048518;positive regulation of biological process;0.0111607931549709!GO:0048487;beta-tubulin binding;0.0114147604484616!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0114589368629935!GO:0050852;T cell receptor signaling pathway;0.0118461865355371!GO:0031252;leading edge;0.0119754116904703!GO:0016859;cis-trans isomerase activity;0.0119754116904703!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0122721854915265!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0122721854915265!GO:0008276;protein methyltransferase activity;0.0126577433129765!GO:0031123;RNA 3'-end processing;0.0126799393132286!GO:0016272;prefoldin complex;0.0128410108121037!GO:0051092;activation of NF-kappaB transcription factor;0.0128410108121037!GO:0006626;protein targeting to mitochondrion;0.0133413479882151!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0139074482874873!GO:0015002;heme-copper terminal oxidase activity;0.0139074482874873!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0139074482874873!GO:0004129;cytochrome-c oxidase activity;0.0139074482874873!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0140078709178348!GO:0008287;protein serine/threonine phosphatase complex;0.0140187729952372!GO:0005096;GTPase activator activity;0.0144530664926906!GO:0000287;magnesium ion binding;0.0149814295575931!GO:0000049;tRNA binding;0.0150956143753138!GO:0030258;lipid modification;0.0153287662885268!GO:0045454;cell redox homeostasis;0.0153287662885268!GO:0032200;telomere organization and biogenesis;0.0153343258966292!GO:0000723;telomere maintenance;0.0153343258966292!GO:0051540;metal cluster binding;0.0153343258966292!GO:0051536;iron-sulfur cluster binding;0.0153343258966292!GO:0004532;exoribonuclease activity;0.0153343258966292!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0153343258966292!GO:0051329;interphase of mitotic cell cycle;0.0153502563144259!GO:0032940;secretion by cell;0.0153671459665161!GO:0030137;COPI-coated vesicle;0.0156681028191953!GO:0022406;membrane docking;0.0159817976489384!GO:0048278;vesicle docking;0.0159817976489384!GO:0019955;cytokine binding;0.0159817976489384!GO:0005083;small GTPase regulator activity;0.0160350026788231!GO:0001772;immunological synapse;0.0162791210182805!GO:0008624;induction of apoptosis by extracellular signals;0.0163223552066389!GO:0030663;COPI coated vesicle membrane;0.0163820648258293!GO:0030126;COPI vesicle coat;0.0163820648258293!GO:0051059;NF-kappaB binding;0.0170644814303691!GO:0043621;protein self-association;0.0170849499551109!GO:0000738;DNA catabolic process, exonucleolytic;0.017160616054435!GO:0003950;NAD+ ADP-ribosyltransferase activity;0.0173629468225356!GO:0000775;chromosome, pericentric region;0.0175431502378649!GO:0051223;regulation of protein transport;0.0177031141001141!GO:0005521;lamin binding;0.0177667192088479!GO:0007034;vacuolar transport;0.0177827703426996!GO:0051920;peroxiredoxin activity;0.0179415572511548!GO:0015923;mannosidase activity;0.0182920458996737!GO:0008320;protein transmembrane transporter activity;0.0184083171463991!GO:0006904;vesicle docking during exocytosis;0.0185262743251567!GO:0040029;regulation of gene expression, epigenetic;0.0185262743251567!GO:0000119;mediator complex;0.0186700382096181!GO:0001667;ameboidal cell migration;0.0189910338705456!GO:0032027;myosin light chain binding;0.0189910338705456!GO:0008408;3'-5' exonuclease activity;0.0191432708994319!GO:0035258;steroid hormone receptor binding;0.0195382354665468!GO:0005869;dynactin complex;0.0197476952170971!GO:0016311;dephosphorylation;0.0198827663159954!GO:0016791;phosphoric monoester hydrolase activity;0.0198884174497686!GO:0006839;mitochondrial transport;0.0200825165724711!GO:0000090;mitotic anaphase;0.0200825165724711!GO:0051322;anaphase;0.0200825165724711!GO:0016585;chromatin remodeling complex;0.0203516763008893!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.020949398909792!GO:0016788;hydrolase activity, acting on ester bonds;0.0211392292544949!GO:0006914;autophagy;0.0214087425304745!GO:0004003;ATP-dependent DNA helicase activity;0.0214708559360706!GO:0046467;membrane lipid biosynthetic process;0.0215476848724045!GO:0008097;5S rRNA binding;0.0218121012261983!GO:0030880;RNA polymerase complex;0.0218758419046938!GO:0044438;microbody part;0.0228594347237358!GO:0044439;peroxisomal part;0.0228594347237358!GO:0004197;cysteine-type endopeptidase activity;0.0229652498919247!GO:0022884;macromolecule transmembrane transporter activity;0.0234344634221521!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0234344634221521!GO:0043087;regulation of GTPase activity;0.0235214454161908!GO:0030127;COPII vesicle coat;0.0236543326253287!GO:0012507;ER to Golgi transport vesicle membrane;0.0236543326253287!GO:0006284;base-excision repair;0.0237206346286884!GO:0032508;DNA duplex unwinding;0.0237888981535306!GO:0032392;DNA geometric change;0.0237888981535306!GO:0007004;telomere maintenance via telomerase;0.0238507380326257!GO:0005048;signal sequence binding;0.0241401864741543!GO:0051325;interphase;0.0241969898989505!GO:0019904;protein domain specific binding;0.0244635431507776!GO:0043433;negative regulation of transcription factor activity;0.0244784580073849!GO:0008637;apoptotic mitochondrial changes;0.0248851337966181!GO:0004402;histone acetyltransferase activity;0.0248851337966181!GO:0004468;lysine N-acetyltransferase activity;0.0248851337966181!GO:0004177;aminopeptidase activity;0.025242557632035!GO:0043022;ribosome binding;0.0253746564842442!GO:0006497;protein amino acid lipidation;0.0262982695882766!GO:0006595;polyamine metabolic process;0.0267112743242723!GO:0051098;regulation of binding;0.0282890476104915!GO:0042608;T cell receptor binding;0.0289204672847405!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0290542178866533!GO:0045045;secretory pathway;0.0290877936968249!GO:0000059;protein import into nucleus, docking;0.0290877936968249!GO:0019210;kinase inhibitor activity;0.0293308312758402!GO:0004722;protein serine/threonine phosphatase activity;0.0295312227190822!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0295312227190822!GO:0045603;positive regulation of endothelial cell differentiation;0.0296086709808014!GO:0045321;leukocyte activation;0.0296425347259711!GO:0042393;histone binding;0.0297360007154099!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0299452949534565!GO:0016605;PML body;0.0299993810086512!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0300653817764744!GO:0030134;ER to Golgi transport vesicle;0.0305670719396574!GO:0006506;GPI anchor biosynthetic process;0.0305670719396574!GO:0043281;regulation of caspase activity;0.0308555305034908!GO:0016763;transferase activity, transferring pentosyl groups;0.0315184499826597!GO:0016569;covalent chromatin modification;0.032010162054962!GO:0006919;caspase activation;0.0323245928603303!GO:0019976;interleukin-2 binding;0.0323245928603303!GO:0004911;interleukin-2 receptor activity;0.0323245928603303!GO:0030867;rough endoplasmic reticulum membrane;0.0323929255838866!GO:0009112;nucleobase metabolic process;0.0324202774790246!GO:0000339;RNA cap binding;0.0324455397451399!GO:0008139;nuclear localization sequence binding;0.0325853520309317!GO:0000152;nuclear ubiquitin ligase complex;0.0328608403046884!GO:0030833;regulation of actin filament polymerization;0.0333454351849819!GO:0006144;purine base metabolic process;0.0333978362338284!GO:0000118;histone deacetylase complex;0.0339534601678348!GO:0008180;signalosome;0.0341606974044575!GO:0006505;GPI anchor metabolic process;0.0348058235663559!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.034967487537592!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.034967487537592!GO:0031903;microbody membrane;0.0350337743474311!GO:0005778;peroxisomal membrane;0.0350337743474311!GO:0046979;TAP2 binding;0.0350652552633967!GO:0046977;TAP binding;0.0350652552633967!GO:0046978;TAP1 binding;0.0350652552633967!GO:0007259;JAK-STAT cascade;0.0353382678203044!GO:0002820;negative regulation of adaptive immune response;0.0354286373224317!GO:0002823;negative regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;0.0354286373224317!GO:0031461;cullin-RING ubiquitin ligase complex;0.0356026326966056!GO:0033116;ER-Golgi intermediate compartment membrane;0.0371901951762235!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0371901951762235!GO:0000428;DNA-directed RNA polymerase complex;0.0371901951762235!GO:0006013;mannose metabolic process;0.0379199573167321!GO:0002378;immunoglobulin biosynthetic process;0.0383760392312084!GO:0001911;negative regulation of leukocyte mediated cytotoxicity;0.0383760392312084!GO:0001915;negative regulation of T cell mediated cytotoxicity;0.0383760392312084!GO:0000726;non-recombinational repair;0.0385813199283933!GO:0031982;vesicle;0.0389600028429043!GO:0030125;clathrin vesicle coat;0.0389600028429043!GO:0030665;clathrin coated vesicle membrane;0.0389600028429043!GO:0046426;negative regulation of JAK-STAT cascade;0.039000700271732!GO:0004860;protein kinase inhibitor activity;0.0393108312848199!GO:0004721;phosphoprotein phosphatase activity;0.039750852577221!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0397823294146965!GO:0016279;protein-lysine N-methyltransferase activity;0.0406268352936017!GO:0018024;histone-lysine N-methyltransferase activity;0.0406268352936017!GO:0016278;lysine N-methyltransferase activity;0.0406268352936017!GO:0005832;chaperonin-containing T-complex;0.0406268352936017!GO:0001784;phosphotyrosine binding;0.0410500810417673!GO:0006672;ceramide metabolic process;0.0411421511149424!GO:0006378;mRNA polyadenylation;0.0413224090779045!GO:0030119;AP-type membrane coat adaptor complex;0.0414289845205374!GO:0048002;antigen processing and presentation of peptide antigen;0.0417827417097629!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0421415124143784!GO:0031647;regulation of protein stability;0.0423499989265832!GO:0016570;histone modification;0.0433386032925902!GO:0030041;actin filament polymerization;0.0440296013017022!GO:0050681;androgen receptor binding;0.0441138025578069!GO:0000082;G1/S transition of mitotic cell cycle;0.0443819994739371!GO:0045309;protein phosphorylated amino acid binding;0.0448586765248347!GO:0000178;exosome (RNase complex);0.0452122736290535!GO:0002456;T cell mediated immunity;0.0456654380072143!GO:0009165;nucleotide biosynthetic process;0.0457448679081801!GO:0007021;tubulin folding;0.045789416871318!GO:0000781;chromosome, telomeric region;0.0465555420230906!GO:0022411;cellular component disassembly;0.0466640141134832!GO:0046854;phosphoinositide phosphorylation;0.0470187897346052!GO:0015980;energy derivation by oxidation of organic compounds;0.0472302634987891!GO:0031988;membrane-bound vesicle;0.0475230218705479!GO:0042809;vitamin D receptor binding;0.0484046904754529!GO:0048468;cell development;0.0488065674263871!GO:0007093;mitotic cell cycle checkpoint;0.0491435578517941!GO:0000303;response to superoxide;0.0492051863878802!GO:0030131;clathrin adaptor complex;0.0492957609477584!GO:0006007;glucose catabolic process;0.0494214824400272!GO:0043280;positive regulation of caspase activity;0.0494214824400272!GO:0005777;peroxisome;0.0494255493024342!GO:0042579;microbody;0.0494255493024342!GO:0051235;maintenance of localization;0.0495338374351334!GO:0046834;lipid phosphorylation;0.0495338374351334!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0495462668607129!GO:0000018;regulation of DNA recombination;0.0495911448044785!GO:0046982;protein heterodimerization activity;0.0496852918678528!GO:0006406;mRNA export from nucleus;0.0496852918678528
|sample_id=11908
|sample_id=11908
|sample_note=
|sample_note=
Line 76: Line 99:
|sample_tissue=blood
|sample_tissue=blood
|top_motifs=PAX3,7:3.59917875098;CDX1,2,4:3.21549776583;BPTF:2.68933796228;FOX{D1,D2}:2.57798247449;RUNX1..3:2.54643345197;ELF1,2,4:2.54100164665;FOX{F1,F2,J1}:2.27790572213;CREB1:2.26967429553;PDX1:2.13680482473;ATF5_CREB3:2.01434157063;TLX2:1.99863033613;ZBTB16:1.84504023859;DMAP1_NCOR{1,2}_SMARC:1.81826764414;FOXO1,3,4:1.80028506179;ETS1,2:1.77456370026;PAX4:1.76130531127;RFX2..5_RFXANK_RFXAP:1.74617034312;ATF4:1.7245244382;RORA:1.68044124533;HMX1:1.58662416223;FOX{I1,J2}:1.55336911834;FOXN1:1.4727691055;IRF1,2:1.36951696514;T:1.34659416608;SPI1:1.28999616846;TGIF1:1.13426215305;PBX1:1.07173324218;JUN:1.0686420514;NKX6-1,2:1.05783219327;ELK1,4_GABP{A,B1}:1.05375947798;GATA6:1.00964416322;PAX2:0.891524745416;SPIB:0.886432937711;YY1:0.864449000212;SPZ1:0.832913691865;CUX2:0.785157026557;NANOG{mouse}:0.727285567298;CRX:0.715689746267;ATF2:0.703921889911;IRF7:0.677229251304;ALX1:0.664125123582;RFX1:0.644627423643;NKX3-1:0.585884553224;BREu{core}:0.584687751275;STAT1,3:0.578522392426;SNAI1..3:0.569840757957;IKZF2:0.552028132024;POU1F1:0.548770031596;MYOD1:0.52409253041;EP300:0.515460985293;NFIL3:0.509117256023;NFIX:0.499804512748;ZEB1:0.461918721921;NFATC1..3:0.454713872023;LEF1_TCF7_TCF7L1,2:0.420683717806;ATF6:0.392308054887;NFKB1_REL_RELA:0.371977699581;SOX2:0.341078589577;FOXQ1:0.334736668761;FOXP1:0.289220733631;MYB:0.272858964418;PAX6:0.259730977229;SREBF1,2:0.233320755135;AHR_ARNT_ARNT2:0.19583139868;MAFB:0.181379700397;HAND1,2:0.180932361447;PITX1..3:0.175832147583;SOX5:0.166914951232;NKX2-2,8:0.130382814309;AIRE:0.106411946215;VSX1,2:0.0984184676811;ZNF384:0.0664195150959;NKX2-1,4:0.038606154803;NRF1:0.0382788187723;POU2F1..3:0.0257674908014;HIF1A:0.0179790330385;E2F1..5:0.0104893779391;OCT4_SOX2{dimer}:-0.00684019412135;TAL1_TCF{3,4,12}:-0.00708369581507;FOXA2:-0.0114133585854;LMO2:-0.0472416662137;STAT5{A,B}:-0.0885020389395;EVI1:-0.112572731665;NANOG:-0.157777057954;POU3F1..4:-0.192515812383;NFE2L1:-0.229652872476;HMGA1,2:-0.238892951814;TOPORS:-0.262004422143;NHLH1,2:-0.264914172921;HBP1_HMGB_SSRP1_UBTF:-0.290295818601;HLF:-0.304341505291;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.314068691685;HOXA9_MEIS1:-0.326266658261;NFY{A,B,C}:-0.334308139949;SMAD1..7,9:-0.340653727555;GFI1:-0.344847543444;HOX{A6,A7,B6,B7}:-0.363546051543;ZNF143:-0.380107268865;FOSL2:-0.391823699827;NR5A1,2:-0.39698317246;MYFfamily:-0.398145455642;FOS_FOS{B,L1}_JUN{B,D}:-0.413607991859;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.423685627417;HNF4A_NR2F1,2:-0.424720353521;CEBPA,B_DDIT3:-0.458956222861;FOXM1:-0.46968089626;PRRX1,2:-0.481004948661;HNF1A:-0.510399507829;GLI1..3:-0.517519260675;BACH2:-0.521007154921;GCM1,2:-0.523281426783;STAT2,4,6:-0.527393764694;ALX4:-0.531950764984;RREB1:-0.555882036208;DBP:-0.567992254189;ARID5B:-0.571837428912;RBPJ:-0.57799719269;NFE2:-0.583852592566;AR:-0.593990601149;ZNF148:-0.632175134674;SRF:-0.651614187301;TBX4,5:-0.666745569366;FOXP3:-0.670151048552;ZNF423:-0.672626668837;HES1:-0.691556813037;PAX8:-0.705834801317;GFI1B:-0.794201934642;NFE2L2:-0.818078379077;EGR1..3:-0.838983190504;ADNP_IRX_SIX_ZHX:-0.839051106226;PRDM1:-0.863525718404;MEF2{A,B,C,D}:-0.869722626503;SOX{8,9,10}:-0.883758145725;FOXD3:-0.883846625297;LHX3,4:-0.899833839857;MED-1{core}:-0.901867254031;PAX5:-0.948413462557;GATA4:-0.980293480829;bHLH_family:-0.991907596039;ZFP161:-0.996567868039;MYBL2:-0.998277733425;ZNF238:-1.00218588089;HOX{A5,B5}:-1.01482244992;UFEwm:-1.04524604819;TP53:-1.07983171047;MZF1:-1.10390498183;NR1H4:-1.12026925765;REST:-1.1546524877;TFAP4:-1.18907347726;ONECUT1,2:-1.1897615231;SOX17:-1.19777073195;NKX2-3_NKX2-5:-1.2063253697;TFDP1:-1.20859810498;ZIC1..3:-1.22035281828;MTF1:-1.22834588246;NR3C1:-1.22980197949;TFCP2:-1.24488402827;ZBTB6:-1.24750598377;CDC5L:-1.26936013327;MTE{core}:-1.27596159123;TEF:-1.3337837118;RXRA_VDR{dimer}:-1.3456589231;POU5F1:-1.36047589294;PATZ1:-1.36629887393;ESR1:-1.49564075386;MAZ:-1.52888446894;KLF4:-1.54984592255;POU6F1:-1.56260475298;GTF2I:-1.58153740892;TLX1..3_NFIC{dimer}:-1.61442808929;TEAD1:-1.66131364376;TBP:-1.7014960328;NKX3-2:-1.74125511205;EN1,2:-1.77034797684;PPARG:-1.78115194498;HSF1,2:-1.78551539278;GZF1:-1.84464018231;TFAP2B:-1.85311743162;HIC1:-1.86794042088;TFAP2{A,C}:-1.87593895048;EBF1:-1.88200491688;ESRRA:-1.8895566011;FOXL1:-1.91728621445;HOX{A4,D4}:-1.92333378547;NR6A1:-1.92505675672;RXR{A,B,G}:-1.93406471792;GTF2A1,2:-1.94448165266;XCPE1{core}:-1.95632916046;SP1:-2.05321470415;PAX1,9:-2.05669249766;XBP1:-2.33716056924;IKZF1:-2.50824379873
|top_motifs=PAX3,7:3.59917875098;CDX1,2,4:3.21549776583;BPTF:2.68933796228;FOX{D1,D2}:2.57798247449;RUNX1..3:2.54643345197;ELF1,2,4:2.54100164665;FOX{F1,F2,J1}:2.27790572213;CREB1:2.26967429553;PDX1:2.13680482473;ATF5_CREB3:2.01434157063;TLX2:1.99863033613;ZBTB16:1.84504023859;DMAP1_NCOR{1,2}_SMARC:1.81826764414;FOXO1,3,4:1.80028506179;ETS1,2:1.77456370026;PAX4:1.76130531127;RFX2..5_RFXANK_RFXAP:1.74617034312;ATF4:1.7245244382;RORA:1.68044124533;HMX1:1.58662416223;FOX{I1,J2}:1.55336911834;FOXN1:1.4727691055;IRF1,2:1.36951696514;T:1.34659416608;SPI1:1.28999616846;TGIF1:1.13426215305;PBX1:1.07173324218;JUN:1.0686420514;NKX6-1,2:1.05783219327;ELK1,4_GABP{A,B1}:1.05375947798;GATA6:1.00964416322;PAX2:0.891524745416;SPIB:0.886432937711;YY1:0.864449000212;SPZ1:0.832913691865;CUX2:0.785157026557;NANOG{mouse}:0.727285567298;CRX:0.715689746267;ATF2:0.703921889911;IRF7:0.677229251304;ALX1:0.664125123582;RFX1:0.644627423643;NKX3-1:0.585884553224;BREu{core}:0.584687751275;STAT1,3:0.578522392426;SNAI1..3:0.569840757957;IKZF2:0.552028132024;POU1F1:0.548770031596;MYOD1:0.52409253041;EP300:0.515460985293;NFIL3:0.509117256023;NFIX:0.499804512748;ZEB1:0.461918721921;NFATC1..3:0.454713872023;LEF1_TCF7_TCF7L1,2:0.420683717806;ATF6:0.392308054887;NFKB1_REL_RELA:0.371977699581;SOX2:0.341078589577;FOXQ1:0.334736668761;FOXP1:0.289220733631;MYB:0.272858964418;PAX6:0.259730977229;SREBF1,2:0.233320755135;AHR_ARNT_ARNT2:0.19583139868;MAFB:0.181379700397;HAND1,2:0.180932361447;PITX1..3:0.175832147583;SOX5:0.166914951232;NKX2-2,8:0.130382814309;AIRE:0.106411946215;VSX1,2:0.0984184676811;ZNF384:0.0664195150959;NKX2-1,4:0.038606154803;NRF1:0.0382788187723;POU2F1..3:0.0257674908014;HIF1A:0.0179790330385;E2F1..5:0.0104893779391;OCT4_SOX2{dimer}:-0.00684019412135;TAL1_TCF{3,4,12}:-0.00708369581507;FOXA2:-0.0114133585854;LMO2:-0.0472416662137;STAT5{A,B}:-0.0885020389395;EVI1:-0.112572731665;NANOG:-0.157777057954;POU3F1..4:-0.192515812383;NFE2L1:-0.229652872476;HMGA1,2:-0.238892951814;TOPORS:-0.262004422143;NHLH1,2:-0.264914172921;HBP1_HMGB_SSRP1_UBTF:-0.290295818601;HLF:-0.304341505291;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.314068691685;HOXA9_MEIS1:-0.326266658261;NFY{A,B,C}:-0.334308139949;SMAD1..7,9:-0.340653727555;GFI1:-0.344847543444;HOX{A6,A7,B6,B7}:-0.363546051543;ZNF143:-0.380107268865;FOSL2:-0.391823699827;NR5A1,2:-0.39698317246;MYFfamily:-0.398145455642;FOS_FOS{B,L1}_JUN{B,D}:-0.413607991859;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.423685627417;HNF4A_NR2F1,2:-0.424720353521;CEBPA,B_DDIT3:-0.458956222861;FOXM1:-0.46968089626;PRRX1,2:-0.481004948661;HNF1A:-0.510399507829;GLI1..3:-0.517519260675;BACH2:-0.521007154921;GCM1,2:-0.523281426783;STAT2,4,6:-0.527393764694;ALX4:-0.531950764984;RREB1:-0.555882036208;DBP:-0.567992254189;ARID5B:-0.571837428912;RBPJ:-0.57799719269;NFE2:-0.583852592566;AR:-0.593990601149;ZNF148:-0.632175134674;SRF:-0.651614187301;TBX4,5:-0.666745569366;FOXP3:-0.670151048552;ZNF423:-0.672626668837;HES1:-0.691556813037;PAX8:-0.705834801317;GFI1B:-0.794201934642;NFE2L2:-0.818078379077;EGR1..3:-0.838983190504;ADNP_IRX_SIX_ZHX:-0.839051106226;PRDM1:-0.863525718404;MEF2{A,B,C,D}:-0.869722626503;SOX{8,9,10}:-0.883758145725;FOXD3:-0.883846625297;LHX3,4:-0.899833839857;MED-1{core}:-0.901867254031;PAX5:-0.948413462557;GATA4:-0.980293480829;bHLH_family:-0.991907596039;ZFP161:-0.996567868039;MYBL2:-0.998277733425;ZNF238:-1.00218588089;HOX{A5,B5}:-1.01482244992;UFEwm:-1.04524604819;TP53:-1.07983171047;MZF1:-1.10390498183;NR1H4:-1.12026925765;REST:-1.1546524877;TFAP4:-1.18907347726;ONECUT1,2:-1.1897615231;SOX17:-1.19777073195;NKX2-3_NKX2-5:-1.2063253697;TFDP1:-1.20859810498;ZIC1..3:-1.22035281828;MTF1:-1.22834588246;NR3C1:-1.22980197949;TFCP2:-1.24488402827;ZBTB6:-1.24750598377;CDC5L:-1.26936013327;MTE{core}:-1.27596159123;TEF:-1.3337837118;RXRA_VDR{dimer}:-1.3456589231;POU5F1:-1.36047589294;PATZ1:-1.36629887393;ESR1:-1.49564075386;MAZ:-1.52888446894;KLF4:-1.54984592255;POU6F1:-1.56260475298;GTF2I:-1.58153740892;TLX1..3_NFIC{dimer}:-1.61442808929;TEAD1:-1.66131364376;TBP:-1.7014960328;NKX3-2:-1.74125511205;EN1,2:-1.77034797684;PPARG:-1.78115194498;HSF1,2:-1.78551539278;GZF1:-1.84464018231;TFAP2B:-1.85311743162;HIC1:-1.86794042088;TFAP2{A,C}:-1.87593895048;EBF1:-1.88200491688;ESRRA:-1.8895566011;FOXL1:-1.91728621445;HOX{A4,D4}:-1.92333378547;NR6A1:-1.92505675672;RXR{A,B,G}:-1.93406471792;GTF2A1,2:-1.94448165266;XCPE1{core}:-1.95632916046;SP1:-2.05321470415;PAX1,9:-2.05669249766;XBP1:-2.33716056924;IKZF1:-2.50824379873
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11908-125F9;search_select_hide=table117:FF:11908-125F9
}}
}}

Latest revision as of 18:28, 4 June 2020

Name:CD4+CD25+CD45RA- memory regulatory T cells, donor3
Species:Human (Homo sapiens)
Library ID:CNhs13538
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexmale
age23
cell typeT cell
cell lineNA
companyNA
collaborationMichael Rehli (University of Regensberg)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number37-38
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005127
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13538 CAGE DRX008186 DRR009058
Accession ID Hg19

Library idBAMCTSS
CNhs13538 DRZ000483 DRZ001868
Accession ID Hg38

Library idBAMCTSS
CNhs13538 DRZ011833 DRZ013218
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils1.053
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.135
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
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C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13538

Jaspar motifP-value
MA0002.22.51936e-6
MA0003.10.741
MA0004.10.867
MA0006.10.229
MA0007.10.814
MA0009.10.0557
MA0014.10.971
MA0017.10.282
MA0018.27.00442e-5
MA0019.10.798
MA0024.10.653
MA0025.10.549
MA0027.10.77
MA0028.12.95516e-4
MA0029.10.155
MA0030.10.0448
MA0031.10.00341
MA0035.20.152
MA0038.10.0654
MA0039.20.738
MA0040.10.64
MA0041.10.46
MA0042.10.632
MA0043.10.125
MA0046.10.186
MA0047.20.0988
MA0048.10.54
MA0050.16.58335e-9
MA0051.10.00129
MA0052.10.00363
MA0055.10.626
MA0057.10.571
MA0058.10.731
MA0059.10.533
MA0060.10.0549
MA0061.10.01
MA0062.22.44978e-14
MA0065.20.153
MA0066.10.143
MA0067.10.03
MA0068.10.114
MA0069.10.89
MA0070.10.58
MA0071.10.981
MA0072.10.175
MA0073.10.943
MA0074.10.377
MA0076.12.78137e-6
MA0077.10.0167
MA0078.10.625
MA0079.20.276
MA0080.24.10713e-11
MA0081.10.0327
MA0083.10.045
MA0084.10.41
MA0087.10.537
MA0088.10.387
MA0090.11.09531e-4
MA0091.10.654
MA0092.10.944
MA0093.10.949
MA0099.20.0099
MA0100.10.472
MA0101.10.776
MA0102.20.684
MA0103.10.147
MA0104.20.212
MA0105.12.72254e-6
MA0106.10.367
MA0107.10.935
MA0108.22.05801e-10
MA0111.10.0937
MA0112.20.272
MA0113.10.626
MA0114.10.453
MA0115.10.576
MA0116.14.75632e-5
MA0117.10.153
MA0119.10.969
MA0122.10.631
MA0124.10.364
MA0125.10.282
MA0131.10.241
MA0135.10.272
MA0136.18.58148e-22
MA0137.20.859
MA0138.20.334
MA0139.10.0275
MA0140.10.0833
MA0141.10.531
MA0142.10.389
MA0143.10.506
MA0144.10.885
MA0145.10.511
MA0146.10.66
MA0147.10.179
MA0148.10.417
MA0149.10.11
MA0150.10.862
MA0152.10.0144
MA0153.10.2
MA0154.10.035
MA0155.10.438
MA0156.19.58504e-17
MA0157.10.0022
MA0159.10.217
MA0160.10.982
MA0162.10.789
MA0163.11.45754e-7
MA0164.10.628
MA0258.10.284
MA0259.10.302



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13538

Novel motifP-value
10.194
100.00718
1000.766
1010.0728
1020.889
1030.297
1040.889
1050.432
1060.551
1070.03
1080.733
1090.192
110.154
1100.694
1110.318
1120.462
1130.232
1140.265
1150.372
1160.55
1170.00418
1180.338
1190.916
120.799
1200.996
1210.638
1220.63
1230.00101
1240.321
1250.94
1260.434
1270.742
1280.851
1290.985
130.549
1300.307
1310.786
1320.329
1330.696
1340.733
1350.641
1360.896
1370.0624
1380.159
1390.047
140.371
1400.104
1410.354
1420.503
1430.0061
1440.982
1450.511
1460.652
1470.053
1480.0568
1490.594
150.0983
1500.797
1510.569
1520.255
1530.653
1540.561
1550.017
1560.524
1570.311
1580.00765
1590.934
160.946
1600.625
1610.71
1620.0532
1630.74
1640.0735
1650.247
1660.445
1670.175
1680.718
1690.998
170.931
180.605
190.339
20.64
200.659
210.729
220.639
230.736
240.727
250.0531
260.271
270.416
280.478
290.0123
30.118
300.157
310.883
320.225
330.229
340.437
350.136
360.0256
370.204
380.987
390.352
40.801
400.566
410.137
420.0974
430.365
440.53
450.391
460.209
470.101
480.242
490.0828
50.333
500.441
510.64
520.363
530.452
540.872
550.627
560.837
570.59
580.0791
590.86
60.987
600.434
610.118
620.057
630.86
640.416
650.925
660.835
670.951
680.992
690.896
70.221
700.038
710.0302
720.0642
730.866
740.384
750.0243
760.159
770.102
780.272
790.829
80.967
800.029
810.282
820.0886
830.771
840.696
850.773
860.108
870.519
880.775
890.197
90.957
900.00969
910.489
920.31
930.561
940.118
950.132
960.122
970.338
980.0972
993.32198e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13538


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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