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Difference between revisions of "FF:11911-125G3"

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{{f5samples
 
{{f5samples
 +
|DRA_sample_Accession=CAGE@SAMD00005535
 +
|accession_numbers=CAGE;DRX008169;DRR009041;DRZ000466;DRZ001851;DRZ011816;DRZ013201
 
|ancestors_in_anatomy_facet=
 
|ancestors_in_anatomy_facet=
 
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000875,CL:0002396
 
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000875,CL:0002396
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|created_by=
 
|created_by=
 
|creation_date=
 
|creation_date=
|datafreeze_phase=1
+
|data_phase=2
 +
|datafreeze_phase=2
 
|def=
 
|def=
 
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.75!560.23!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.61!404.60!SPI1;;chr7:50344289..50344323,+!p1@IKZF1!2.18!148.69!IKZF1;;chr16:85932760..85932775,+!p1@IRF8!2.12!130.06!IRF8;;chr11:47400062..47400077,-!p2@SPI1!2.03!105.21!SPI1;;chr11:47399947..47399961,-!p3@SPI1!1.91!81.10!SPI1;;chr12:54778351..54778378,-!p6@ZNF385A!1.72!51.15!ZNF385A;;chr2:145277640..145277771,-!p1@ZEB2!1.66!562.42!ZEB2;;chr19:13213662..13213686,-!p1@LYL1!1.66!65.21!LYL1;;chr11:47400032..47400043,-!p5@SPI1!1.65!43.47!SPI1;;chr20:39317868..39317884,-!p1@MAFB!1.63!463.78!MAFB;;chr12:54778471..54778528,-!p1@ZNF385A!1.62!40.73!ZNF385A;;chr11:47399996..47400014,-!p4@SPI1!1.59!38.18!SPI1;;chr1:212873084..212873137,-!p2@BATF3!1.52!31.97!BATF3;;chr19:33793430..33793447,-!p1@CEBPA!1.50!124.03!CEBPA;;chr11:47399920..47399931,-!p7@SPI1!1.50!30.69!SPI1;;chr5:176735063..176735088,-!p2@MXD3!1.49!29.59!MXD3;;chrX:106960180..106960197,-!p2@TSC22D3!1.48!107.22!TSC22D3;;chr11:47400045..47400060,-!p6@SPI1!1.48!28.86!SPI1;;chr7:128577972..128578047,+!p1@IRF5!1.44!41.46!IRF5;;chr14:75745523..75745537,+!p1@FOS!1.40!2762.06!FOS;;chr5:88178983..88179012,-!p1@MEF2C!1.39!175.54!MEF2C;;chr19:16435625..16435682,+!p1@KLF2!1.38!713.12!KLF2;;chr10:114710098..114710130,+!p2@TCF7L2!1.36!158.19!TCF7L2;;chr1:25256756..25256774,-!p1@RUNX3!1.35!39.64!RUNX3;;chr7:50343634..50343717,+!p2@IKZF1!1.35!21.37!IKZF1;;chr9:110252035..110252057,-!p1@KLF4!1.33!314.00!KLF4;;chr1:212873061..212873080,-!p4@BATF3!1.31!19.55!BATF3;;chr2:231090433..231090469,+!p1@SP140!1.28!18.08!SP140;;chr10:51572408..51572454,+!p3@NCOA4!1.27!100.83!NCOA4;;chr10:94449703..94449718,+!p1@HHEX!1.27!67.04!HHEX;;chr19:42636586..42636607,-!p1@POU2F2!1.23!44.20!POU2F2;;chrX:106960221..106960236,-!p3@TSC22D3!1.23!43.66!TSC22D3;;chr20:48807456..48807475,+!p3@CEBPB!1.23!30.50!CEBPB;;chr1:25256439..25256476,-!p3@RUNX3!1.23!16.07!RUNX3;;chr3:101568349..101568365,+!p1@NFKBIZ!1.22!790.39!NFKBIZ;;chr10:114709999..114710031,+!p1@TCF7L2!1.22!365.15!TCF7L2;;chr9:110250697..110250738,-!p2@KLF4!1.21!18.08!KLF4;;chr21:34442439..34442455,+!p1@OLIG1!1.21!15.16!OLIG1;;chr2:145271342..145271377,-!p5@ZEB2!1.19!14.61!ZEB2;;chrX:106960249..106960260,-!p5@TSC22D3!1.18!22.47!TSC22D3;;chrY:21906594..21906622,-!p1@KDM5D!1.17!13.88!KDM5D;;chr21:30672433..30672464,+!p6@BACH1!1.17!13.70!BACH1;;chr11:128563948..128564003,+!p1@FLI1!1.16!162.02!FLI1;;chr2:28618532..28618610,+!p4@FOSL2!1.16!23.20!FOSL2;;chr2:68592394..68592405,+!p2@PLEK!1.16!13.33!PLEK;;chr19:45971246..45971265,+!p1@FOSB!1.14!238.56!FOSB;;chr21:30671690..30671762,+!p2@BACH1!1.14!43.47!BACH1;;chr10:3827371..3827386,-!p2@KLF6!1.12!103.21!KLF6;;chr2:208394817..208394834,+!p3@CREB1!1.10!46.40!CREB1;;chr8:71316428..71316459,-!p2@NCOA2!1.10!19.55!NCOA2;;chr10:35416142..35416169,+!p3@CREM!1.09!30.14!CREM;;chr13:41593425..41593480,-!p1@ELF1!1.06!67.59!ELF1;;chr2:238600933..238600985,+!p3@LRRFIP1!1.06!57.90!LRRFIP1;;chrX:106960285..106960299,-!p1@TSC22D3!1.04!268.15!TSC22D3;;chr7:77428066..77428132,+!p2@PHTF2!1.04!65.03!PHTF2;;chr12:54694758..54694805,-!p1@NFE2!1.04!12.24!NFE2;;chr5:131826457..131826514,-!p1@IRF1!1.03!388.16!IRF1;;chr2:231090471..231090504,+!p2@SP140!1.03!9.68!SP140;;chr19:12902289..12902307,+!p1@JUNB!1.01!2173.52!JUNB;;chr18:51751066..51751077,-!p6@MBD2!1.01!14.07!MBD2;;chr4:185395633..185395651,-!p2@IRF2!1.00!14.61!IRF2;;chr12:72056800..72056834,+!p1@THAP2!0.98!11.51!THAP2;;chr2:61108695..61108753,+!p1@REL!0.97!59.00!REL;;chr10:94449675..94449694,+!p2@HHEX!0.97!22.83!HHEX;;chr9:110251836..110251887,-!p4@KLF4!0.97!11.14!KLF4;;chr2:208031943..208031978,-!p5@KLF7!0.96!10.96!KLF7;;chr20:56195474..56195506,-!p1@ZBP1!0.96!8.04!ZBP1;;chr14:45722360..45722415,-!p1@MIS18BP1!0.95!128.05!MIS18BP1;;chr9:137217986..137218049,+!p3@RXRA!0.95!23.56!RXRA;;chr20:48807430..48807439,+!p8@CEBPB!0.95!12.24!CEBPB;;chr17:38497662..38497713,+!p4@RARA!0.95!9.32!RARA;;chr2:238600998..238601013,+!p5@LRRFIP1!0.95!7.85!LRRFIP1;;chr19:45579725..45579743,-!p1@ZNF296!0.94!35.62!ZNF296;;chr4:185395590..185395627,-!p3@IRF2!0.94!9.68!IRF2;;chr7:50344251..50344288,+!p3@IKZF1!0.93!7.49!IKZF1;;chr21:34442540..34442560,+!p2@OLIG1!0.93!7.49!OLIG1;;chr2:231084659..231084721,-!p1@SP110!0.92!176.64!SP110;;chr21:30671235..30671253,+!p1@BACH1!0.92!96.81!BACH1;;chr5:88179017..88179046,-!p2@MEF2C!0.92!30.50!MEF2C;;chr19:13213954..13214021,-!p4@LYL1!0.92!7.31!LYL1;;chr1:158978768..158978800,+!p8@IFI16!0.92!7.31!IFI16;;chr20:48807351..48807384,+!p1@CEBPB!0.91!756.23!CEBPB;;chr4:38665810..38665827,+!p1@KLF3!0.91!108.14!KLF3;;chr2:157189180..157189290,-!p1@NR4A2!0.90!37.45!NR4A2;;chr10:114710060..114710069,+!p5@TCF7L2!0.90!12.06!TCF7L2;;chr5:142782823..142782854,-!p3@NR3C1!0.90!10.23!NR3C1;;chr4:185395191..185395226,-!p4@IRF2!0.90!9.86!IRF2;;chr12:72056773..72056796,+!p3@THAP2!0.90!9.13!THAP2;;chr13:41593392..41593403,-!p7@ELF1!0.90!6.94!ELF1;;chr7:115670804..115670825,-!p1@TFEC!0.90!6.94!TFEC;;chr2:70142232..70142251,+!p1@MXD1!0.89!40.00!MXD1;;chr17:38498402..38498445,+!p3@RARA!0.89!25.39!RARA;;chr18:77155922..77155939,+!p1@NFATC1!0.89!19.36!NFATC1;;chr12:52445218..52445237,+!p1@NR4A1!0.88!87.50!NR4A1;;chr4:38665769..38665801,+!p2@KLF3!0.88!63.02!KLF3;;chr4:106068026..106068084,+!p1@TET2!0.88!62.29!TET2;;chr6:144385698..144385742,-!p2@PLAGL1!0.88!8.04!PLAGL1;;chr10:114886551..114886601,+!p11@TCF7L2!0.88!6.58!TCF7L2;;chr2:157198916..157198978,-!p2@NR4A2!0.87!23.56!NR4A2;;chr8:37553292..37553317,+!p1@ZNF703!0.86!158.37!ZNF703;;chrX:129244840..129244881,-!p2@ELF4!0.85!24.48!ELF4;;chr1:158979872..158979898,+!p3@IFI16!0.85!19.55!IFI16;;chr17:38498594..38498661,+!p2@RARA!0.84!21.19!RARA;;chr14:64971288..64971316,-!p2@ZBTB25!0.84!19.36!ZBTB25;;chr9:110252074..110252079,-!p3@KLF4!0.84!10.05!KLF4;;chr10:114710083..114710092,+!p8@TCF7L2!0.84!8.04!TCF7L2;;chr2:61108808..61108821,+!p3@REL!0.84!7.67!REL;;chr10:135044190..135044229,+!p3@UTF1!0.84!5.85!UTF1;;chr2:208031542..208031595,-!p2@KLF7!0.83!43.47!KLF7;;chr16:31885093..31885165,+!p1@ZNF267!0.82!92.79!ZNF267;;chr2:185463247..185463263,+!p1@ZNF804A!0.82!10.23!ZNF804A;;chr19:16435735..16435773,+!p4@KLF2!0.82!5.66!KLF2;;chrX:70712265..70712303,+!p4@TAF1!0.82!5.66!TAF1;;chr9:117150254..117150271,-!p1@AKNA!0.81!15.71!AKNA;;chr1:935398..935465,-!p2@HES4!0.81!11.87!HES4;;chr22:21771656..21771662,+!p1@HIC2!0.81!5.48!HIC2;;chr2:8822176..8822196,+!p1@ID2!0.80!820.89!ID2;;chr18:51750948..51751059,-!p1@MBD2!0.80!184.49!MBD2;;chr20:56195525..56195556,-!p2@ZBP1!0.80!5.30!ZBP1;;chr11:615942..615957,-!p1@IRF7!0.79!53.16!IRF7;;chr10:104154246..104154347,+!p3@NFKB2!0.79!34.71!NFKB2;;chr20:48807648..48807671,+!p9@CEBPB!0.79!7.67!CEBPB;;chr19:45972701..45972774,+!p2@FOSB!0.79!7.31!FOSB;;chr10:31288398..31288455,-!p2@ZNF438!0.78!6.03!ZNF438;;chrX:101186981..101187030,-!p1@ZMAT1!0.77!17.35!ZMAT1;;chr19:42627037..42627084,-!p3@POU2F2!0.77!4.93!POU2F2;;chr6:170862932..170862947,+!p5@TBP!0.77!4.93!TBP;;chr6:44355499..44355514,+!p3@CDC5L!0.76!5.30!CDC5L;;chr8:48650697..48650708,-!p2@CEBPD!0.75!38.54!CEBPD;;chr2:61108650..61108687,+!p2@REL!0.75!25.02!REL;;chr10:43932296..43932360,+!p1@ZNF487P!0.75!10.41!ZNF487P;;chr10:114710218..114710229,+!p4@TCF7L2!0.75!9.86!TCF7L2;;chr14:75746722..75746777,+!p2@FOS!0.75!6.03!FOS;;chr15:90544182..90544195,+!p7@ZNF710!0.75!4.57!ZNF710;;chr11:2292226..2292270,-!p1@ASCL2!0.75!4.57!ASCL2;;chr6:130339710..130339745,+!p1@L3MBTL3!0.74!39.82!L3MBTL3;;chr9:88969339..88969422,-!p2@ZCCHC6!0.74!38.72!ZCCHC6;;chr2:145277882..145277967,-!p3@ZEB2!0.74!8.22!ZEB2;;chr1:44679370..44679422,+!p3@DMAP1!0.74!6.21!DMAP1;;chr6:44233252..44233296,-!p1@NFKBIE!0.73!48.04!NFKBIE;;chr8:71316021..71316068,-!p1@NCOA2!0.73!45.48!NCOA2;;chr17:40440481..40440550,+!p1@STAT5A!0.73!35.07!STAT5A;;chrX:129244454..129244488,-!p1@ELF4!0.73!34.89!ELF4;;chr1:935467..935484,-!p1@HES4!0.73!21.55!HES4;;chr21:30671189..30671207,+!p4@BACH1!0.73!16.99!BACH1;;chr19:4067174..4067200,-!p9@ZBTB7A!0.73!5.48!ZBTB7A;;chr13:41593405..41593416,-!p9@ELF1!0.73!4.38!ELF1;;chrY:2803415..2803468,+!p1@ZFY!0.73!4.38!ZFY;;chr2:10183651..10183713,+!p1@KLF11!0.72!34.52!KLF11;;chr12:72056749..72056767,+!p6@THAP2!0.72!4.75!THAP2;;chr6:108880956..108881011,+!p1@FOXO3!0.71!30.87!FOXO3;;chr10:51572339..51572376,+!p4@NCOA4!0.71!10.23!NCOA4;;chr9:88969303..88969335,-!p1@ZCCHC6!0.70!42.74!ZCCHC6;;chr5:172483347..172483407,+!p1@C5orf41!0.70!33.98!CREBRF;;chr6:28092375..28092412,+!p1@ZSCAN16!0.70!18.63!ZSCAN16;;chr6:41040923..41040952,+!p2@NFYA!0.70!11.69!NFYA;;chr20:48807875..48807982,+!p2@CEBPB!0.69!98.46!CEBPB;;chr19:49140609..49140643,-!p1@DBP!0.69!25.02!DBP;;chr1:40367530..40367597,-!p1@MYCL1!0.69!7.67!MYCL1;;chr2:48541789..48541874,+!p1@FOXN2!0.68!99.00!FOXN2;;chr5:176738887..176738934,-!p1@MXD3!0.68!29.04!MXD3;;chr9:117160738..117160782,-!p2@AKNA!0.68!17.72!AKNA;;chr2:60780607..60780624,-!p2@BCL11A!0.68!12.97!BCL11A;;chr2:145274981..145274994,-!p9@ZEB2!0.68!5.85!ZEB2;;chr14:75988771..75988826,+!p1@BATF!0.68!5.30!BATF;;chr19:13213704..13213726,-!p3@LYL1!0.67!5.11!LYL1;;chr19:10416315..10416333,-!p1@ZGLP1!0.67!3.65!ZGLP1;;chr19:13213691..13213696,-!p9@LYL1!0.67!3.65!LYL1;;chr6:391743..391759,+!p1@IRF4!0.67!3.65!IRF4;;chr14:24630465..24630531,+!p1@IRF9!0.66!160.01!IRF9;;chr3:39195075..39195088,-!p1@CSRNP1!0.66!25.94!CSRNP1;;chr2:60780753..60780800,-!p1@BCL11A!0.66!19.91!BCL11A;;chr4:106067811..106067854,+!p2@TET2!0.66!19.00!TET2;;chr16:3313791..3313834,+!p2@ZNF263!0.66!8.77!ZNF263;;chr3:101546827..101546847,+!p2@NFKBIZ!0.66!5.30!NFKBIZ;;chr2:176033066..176033087,-!p2@ATF2!0.66!4.75!ATF2;;chr3:187463248..187463264,-!p1@BCL6!0.65!87.86!BCL6;;chr9:3525727..3525828,-!p2@RFX3!0.65!9.86!RFX3;;chr1:158979851..158979865,+!p5@IFI16!0.65!8.40!IFI16;;chr18:51750414..51750449,-!p5@MBD2!0.65!7.31!MBD2;;chr20:48807615..48807644,+!p6@CEBPB!0.65!6.21!CEBPB;;chr1:161014760..161014788,-!p4@USF1!0.65!3.47!USF1;;chr2:145275982..145276003,-!p7@ZEB2!0.65!3.47!ZEB2;;chr2:145277632..145277638,-!p17@ZEB2!0.65!3.47!ZEB2;;chr12:54694807..54694832,-!p3@NFE2!0.65!3.47!NFE2;;chr10:3827389..3827408,-!p1@KLF6!0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0.18!2.56!CEBPB;;chr19:45004584..45004601,-!p2@ZNF180!0.18!1.83!ZNF180;;chr7:27135591..27135658,-!p1@HOXA1!0.18!1.83!HOXA1;;chr19:10305752..10305792,-!p2@DNMT1!0.18!1.64!DNMT1;;chr18:52989081..52989117,-!p7@TCF4!0.18!1.28!TCF4;;chr10:35415735..35415756,+!p9@CREM!0.18!1.28!CREM;;chr12:6798731..6798751,-!p4@ZNF384!0.18!1.28!ZNF384;;chrX:83757493..83757508,-!p2@HDX!0.18!1.10!HDX;;chr19:49140595..49140607,-!p3@DBP!0.18!1.10!DBP;;chr1:41157641..41157665,+!p7@NFYC!0.18!0.91!NFYC;;chr10:21822984..21823023,+!p5@MLLT10!0.18!0.91!MLLT10;;chr4:146403912..146403972,+!p5@SMAD1!0.18!0.91!SMAD1;;chr2:176033054..176033065,-!p4@ATF2!0.18!0.73!ATF2;;chr16:88752889..88752921,-!p1@SNAI3!0.18!0.73!SNAI3;;chr21:40177845..40177863,+!p1@ETS2!0.17!80.01!ETS2;;chr12:69753448..69753577,+!p1@YEATS4!0.17!25.76!YEATS4;;chr19:12721725..12721758,+!p1@ZNF791!0.17!22.83!ZNF791;;chr17:2304333..2304364,-!p1@MNT!0.17!17.90!MNT;;chrX:119384629..119384720,+!p1@ZBTB33!0.17!17.54!ZBTB33;;chr16:2273558..2273637,+!p1@E4F1!0.17!12.24!E4F1;;chr1:227751231..227751273,+!p1@ZNF678!0.17!7.85!ZNF678;;chr19:21512202..21512225,-!p1@ZNF708!0.17!6.21!ZNF708;;chr19:21512144..21512191,-!p2@ZNF708!0.17!5.48!ZNF708;;chr8:42698194..42698239,-!p2@THAP1!0.17!5.30!THAP1;;chr19:20011744..20011770,+!p1@ZNF93!0.17!4.38!ZNF93;;chr10:51565156..51565167,+!p5@NCOA4!0.17!3.47!NCOA4;;chr5:178450797..178450814,+!p1@ZNF879!0.17!2.74!ZNF879;;chr6:44233297..44233330,-!p2@NFKBIE!0.17!2.74!NFKBIE;;chr2:145275109..145275128,-!p6@ZEB2!0.17!2.19!ZEB2;;chr2:97202451..97202462,+!p2@ARID5A!0.17!2.19!ARID5A;;chr15:31619535..31619569,+!p5@KLF13!0.17!1.64!KLF13;;chr15:31619570..31619615,+!p6@KLF13!0.17!1.46!KLF13;;chr11:67007445..67007459,+!p4@KDM2A!0.17!1.46!KDM2A;;chr2:28616316..28616327,+!p5@FOSL2!0.17!1.46!FOSL2;;chr1:43148244..43148275,+!p5@YBX1!0.17!1.28!YBX1;;chrX:131623982..131624011,-!p6@MBNL3!0.17!1.10!MBNL3;;chr9:128510454..128510469,+!p3@PBX3!0.17!0.91!PBX3;;chr14:74386613..74386616,+!p7@ZNF410!0.17!0.91!ZNF410;;chr2:178128578..178128597,-!p9@NFE2L2!0.17!0.73!NFE2L2;;chr6:7108210..7108221,+!p7@RREB1!0.17!0.73!RREB1;;chr7:99156011..99156036,+!p7@ZNF655!0.17!0.73!ZNF655;;chr8:81397876..81397898,+!p5@ZBTB10!0.17!0.73!ZBTB10;;chr7:100076765..100076861,-!p1@TSC22D4!0.16!44.75!TSC22D4;;chr19:56154958..56155027,+!p1@ZNF581!0.16!42.56!ZNF581;;chr19:19932513..19932569,-!p1@ZNF506!0.16!23.93!ZNF506;;chr17:35766967..35767022,+!p1@TADA2A!0.16!13.88!TADA2A;;chr3:129158715..129158766,-!p2@MBD4!0.16!11.87!MBD4;;chr17:33288552..33288598,+!p1@ZNF830!0.16!9.50!ZNF830;;chr19:21579908..21579949,+!p1@ZNF493!0.16!7.12!ZNF493;;chr17:2304365..2304388,-!p2@MNT!0.16!5.48!MNT;;chr2:95831389..95831432,-!p1@ZNF514!0.16!4.93!ZNF514;;chr4:38665883..38665922,+!p3@KLF3!0.16!4.20!KLF3;;chr2:208394704..208394715,+!p4@CREB1!0.16!3.47!CREB1;;chr9:2017063..2017144,+!p4@SMARCA2!0.16!3.29!SMARCA2;;chr10:97890024..97890064,+!p2@ZNF518A!0.16!2.74!ZNF518A;;chr19:36705547..36705597,-!p1@ZNF565!0.16!2.56!ZNF565;;chr19:37958285..37958317,-!p3@ZNF569!0.16!2.56!ZNF569;;chr19:12512062..12512094,-!p1@ZNF799!0.16!1.83!ZNF799;;chr19:21512115..21512135,-!p3@ZNF708!0.16!1.83!ZNF708;;chr10:97889464..97889494,+!p3@ZNF518A!0.16!1.64!ZNF518A;;chr1:151253991..151254031,+!p2@ZNF687!0.16!1.64!ZNF687;;chr21:34143999..34144016,-!p4@GCFC1!0.16!1.46!GCFC1;;chr19:20150029..20150078,-!p3@ZNF682!0.16!1.46!ZNF682;;chr4:56413067..56413086,-!p4@CLOCK!0.16!1.46!CLOCK;;chr2:231084723..231084734,-!p4@SP110!0.16!1.28!SP110;;chr10:3824332..3824425,-!p4@KLF6!0.16!1.28!KLF6;;chr19:4066763..4066779,-!p5@ZBTB7A!0.16!1.10!ZBTB7A;;chr19:11616645..11616663,-!p1@ZNF653!0.16!1.10!ZNF653;;chr6:28220002..28220020,-!p3@ZKSCAN4!0.16!1.10!ZKSCAN4;;
 
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.75!560.23!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.61!404.60!SPI1;;chr7:50344289..50344323,+!p1@IKZF1!2.18!148.69!IKZF1;;chr16:85932760..85932775,+!p1@IRF8!2.12!130.06!IRF8;;chr11:47400062..47400077,-!p2@SPI1!2.03!105.21!SPI1;;chr11:47399947..47399961,-!p3@SPI1!1.91!81.10!SPI1;;chr12:54778351..54778378,-!p6@ZNF385A!1.72!51.15!ZNF385A;;chr2:145277640..145277771,-!p1@ZEB2!1.66!562.42!ZEB2;;chr19:13213662..13213686,-!p1@LYL1!1.66!65.21!LYL1;;chr11:47400032..47400043,-!p5@SPI1!1.65!43.47!SPI1;;chr20:39317868..39317884,-!p1@MAFB!1.63!463.78!MAFB;;chr12:54778471..54778528,-!p1@ZNF385A!1.62!40.73!ZNF385A;;chr11:47399996..47400014,-!p4@SPI1!1.59!38.18!SPI1;;chr1:212873084..212873137,-!p2@BATF3!1.52!31.97!BATF3;;chr19:33793430..33793447,-!p1@CEBPA!1.50!124.03!CEBPA;;chr11:47399920..47399931,-!p7@SPI1!1.50!30.69!SPI1;;chr5:176735063..176735088,-!p2@MXD3!1.49!29.59!MXD3;;chrX:106960180..106960197,-!p2@TSC22D3!1.48!107.22!TSC22D3;;chr11:47400045..47400060,-!p6@SPI1!1.48!28.86!SPI1;;chr7:128577972..128578047,+!p1@IRF5!1.44!41.46!IRF5;;chr14:75745523..75745537,+!p1@FOS!1.40!2762.06!FOS;;chr5:88178983..88179012,-!p1@MEF2C!1.39!175.54!MEF2C;;chr19:16435625..16435682,+!p1@KLF2!1.38!713.12!KLF2;;chr10:114710098..114710130,+!p2@TCF7L2!1.36!158.19!TCF7L2;;chr1:25256756..25256774,-!p1@RUNX3!1.35!39.64!RUNX3;;chr7:50343634..50343717,+!p2@IKZF1!1.35!21.37!IKZF1;;chr9:110252035..110252057,-!p1@KLF4!1.33!314.00!KLF4;;chr1:212873061..212873080,-!p4@BATF3!1.31!19.55!BATF3;;chr2:231090433..231090469,+!p1@SP140!1.28!18.08!SP140;;chr10:51572408..51572454,+!p3@NCOA4!1.27!100.83!NCOA4;;chr10:94449703..94449718,+!p1@HHEX!1.27!67.04!HHEX;;chr19:42636586..42636607,-!p1@POU2F2!1.23!44.20!POU2F2;;chrX:106960221..106960236,-!p3@TSC22D3!1.23!43.66!TSC22D3;;chr20:48807456..48807475,+!p3@CEBPB!1.23!30.50!CEBPB;;chr1:25256439..25256476,-!p3@RUNX3!1.23!16.07!RUNX3;;chr3:101568349..101568365,+!p1@NFKBIZ!1.22!790.39!NFKBIZ;;chr10:114709999..114710031,+!p1@TCF7L2!1.22!365.15!TCF7L2;;chr9:110250697..110250738,-!p2@KLF4!1.21!18.08!KLF4;;chr21:34442439..34442455,+!p1@OLIG1!1.21!15.16!OLIG1;;chr2:145271342..145271377,-!p5@ZEB2!1.19!14.61!ZEB2;;chrX:106960249..106960260,-!p5@TSC22D3!1.18!22.47!TSC22D3;;chrY:21906594..21906622,-!p1@KDM5D!1.17!13.88!KDM5D;;chr21:30672433..30672464,+!p6@BACH1!1.17!13.70!BACH1;;chr11:128563948..128564003,+!p1@FLI1!1.16!162.02!FLI1;;chr2:28618532..28618610,+!p4@FOSL2!1.16!23.20!FOSL2;;chr2:68592394..68592405,+!p2@PLEK!1.16!13.33!PLEK;;chr19:45971246..45971265,+!p1@FOSB!1.14!238.56!FOSB;;chr21:30671690..30671762,+!p2@BACH1!1.14!43.47!BACH1;;chr10:3827371..3827386,-!p2@KLF6!1.12!103.21!KLF6;;chr2:208394817..208394834,+!p3@CREB1!1.10!46.40!CREB1;;chr8:71316428..71316459,-!p2@NCOA2!1.10!19.55!NCOA2;;chr10:35416142..35416169,+!p3@CREM!1.09!30.14!CREM;;chr13:41593425..41593480,-!p1@ELF1!1.06!67.59!ELF1;;chr2:238600933..238600985,+!p3@LRRFIP1!1.06!57.90!LRRFIP1;;chrX:106960285..106960299,-!p1@TSC22D3!1.04!268.15!TSC22D3;;chr7:77428066..77428132,+!p2@PHTF2!1.04!65.03!PHTF2;;chr12:54694758..54694805,-!p1@NFE2!1.04!12.24!NFE2;;chr5:131826457..131826514,-!p1@IRF1!1.03!388.16!IRF1;;chr2:231090471..231090504,+!p2@SP140!1.03!9.68!SP140;;chr19:12902289..12902307,+!p1@JUNB!1.01!2173.52!JUNB;;chr18:51751066..51751077,-!p6@MBD2!1.01!14.07!MBD2;;chr4:185395633..185395651,-!p2@IRF2!1.00!14.61!IRF2;;chr12:72056800..72056834,+!p1@THAP2!0.98!11.51!THAP2;;chr2:61108695..61108753,+!p1@REL!0.97!59.00!REL;;chr10:94449675..94449694,+!p2@HHEX!0.97!22.83!HHEX;;chr9:110251836..110251887,-!p4@KLF4!0.97!11.14!KLF4;;chr2:208031943..208031978,-!p5@KLF7!0.96!10.96!KLF7;;chr20:56195474..56195506,-!p1@ZBP1!0.96!8.04!ZBP1;;chr14:45722360..45722415,-!p1@MIS18BP1!0.95!128.05!MIS18BP1;;chr9:137217986..137218049,+!p3@RXRA!0.95!23.56!RXRA;;chr20:48807430..48807439,+!p8@CEBPB!0.95!12.24!CEBPB;;chr17:38497662..38497713,+!p4@RARA!0.95!9.32!RARA;;chr2:238600998..238601013,+!p5@LRRFIP1!0.95!7.85!LRRFIP1;;chr19:45579725..45579743,-!p1@ZNF296!0.94!35.62!ZNF296;;chr4:185395590..185395627,-!p3@IRF2!0.94!9.68!IRF2;;chr7:50344251..50344288,+!p3@IKZF1!0.93!7.49!IKZF1;;chr21:34442540..34442560,+!p2@OLIG1!0.93!7.49!OLIG1;;chr2:231084659..231084721,-!p1@SP110!0.92!176.64!SP110;;chr21:30671235..30671253,+!p1@BACH1!0.92!96.81!BACH1;;chr5:88179017..88179046,-!p2@MEF2C!0.92!30.50!MEF2C;;chr19:13213954..13214021,-!p4@LYL1!0.92!7.31!LYL1;;chr1:158978768..158978800,+!p8@IFI16!0.92!7.31!IFI16;;chr20:48807351..48807384,+!p1@CEBPB!0.91!756.23!CEBPB;;chr4:38665810..38665827,+!p1@KLF3!0.91!108.14!KLF3;;chr2:157189180..157189290,-!p1@NR4A2!0.90!37.45!NR4A2;;chr10:114710060..114710069,+!p5@TCF7L2!0.90!12.06!TCF7L2;;chr5:142782823..142782854,-!p3@NR3C1!0.90!10.23!NR3C1;;chr4:185395191..185395226,-!p4@IRF2!0.90!9.86!IRF2;;chr12:72056773..72056796,+!p3@THAP2!0.90!9.13!THAP2;;chr13:41593392..41593403,-!p7@ELF1!0.90!6.94!ELF1;;chr7:115670804..115670825,-!p1@TFEC!0.90!6.94!TFEC;;chr2:70142232..70142251,+!p1@MXD1!0.89!40.00!MXD1;;chr17:38498402..38498445,+!p3@RARA!0.89!25.39!RARA;;chr18:77155922..77155939,+!p1@NFATC1!0.89!19.36!NFATC1;;chr12:52445218..52445237,+!p1@NR4A1!0.88!87.50!NR4A1;;chr4:38665769..38665801,+!p2@KLF3!0.88!63.02!KLF3;;chr4:106068026..106068084,+!p1@TET2!0.88!62.29!TET2;;chr6:144385698..144385742,-!p2@PLAGL1!0.88!8.04!PLAGL1;;chr10:114886551..114886601,+!p11@TCF7L2!0.88!6.58!TCF7L2;;chr2:157198916..157198978,-!p2@NR4A2!0.87!23.56!NR4A2;;chr8:37553292..37553317,+!p1@ZNF703!0.86!158.37!ZNF703;;chrX:129244840..129244881,-!p2@ELF4!0.85!24.48!ELF4;;chr1:158979872..158979898,+!p3@IFI16!0.85!19.55!IFI16;;chr17:38498594..38498661,+!p2@RARA!0.84!21.19!RARA;;chr14:64971288..64971316,-!p2@ZBTB25!0.84!19.36!ZBTB25;;chr9:110252074..110252079,-!p3@KLF4!0.84!10.05!KLF4;;chr10:114710083..114710092,+!p8@TCF7L2!0.84!8.04!TCF7L2;;chr2:61108808..61108821,+!p3@REL!0.84!7.67!REL;;chr10:135044190..135044229,+!p3@UTF1!0.84!5.85!UTF1;;chr2:208031542..208031595,-!p2@KLF7!0.83!43.47!KLF7;;chr16:31885093..31885165,+!p1@ZNF267!0.82!92.79!ZNF267;;chr2:185463247..185463263,+!p1@ZNF804A!0.82!10.23!ZNF804A;;chr19:16435735..16435773,+!p4@KLF2!0.82!5.66!KLF2;;chrX:70712265..70712303,+!p4@TAF1!0.82!5.66!TAF1;;chr9:117150254..117150271,-!p1@AKNA!0.81!15.71!AKNA;;chr1:935398..935465,-!p2@HES4!0.81!11.87!HES4;;chr22:21771656..21771662,+!p1@HIC2!0.81!5.48!HIC2;;chr2:8822176..8822196,+!p1@ID2!0.80!820.89!ID2;;chr18:51750948..51751059,-!p1@MBD2!0.80!184.49!MBD2;;chr20:56195525..56195556,-!p2@ZBP1!0.80!5.30!ZBP1;;chr11:615942..615957,-!p1@IRF7!0.79!53.16!IRF7;;chr10:104154246..104154347,+!p3@NFKB2!0.79!34.71!NFKB2;;chr20:48807648..48807671,+!p9@CEBPB!0.79!7.67!CEBPB;;chr19:45972701..45972774,+!p2@FOSB!0.79!7.31!FOSB;;chr10:31288398..31288455,-!p2@ZNF438!0.78!6.03!ZNF438;;chrX:101186981..101187030,-!p1@ZMAT1!0.77!17.35!ZMAT1;;chr19:42627037..42627084,-!p3@POU2F2!0.77!4.93!POU2F2;;chr6:170862932..170862947,+!p5@TBP!0.77!4.93!TBP;;chr6:44355499..44355514,+!p3@CDC5L!0.76!5.30!CDC5L;;chr8:48650697..48650708,-!p2@CEBPD!0.75!38.54!CEBPD;;chr2:61108650..61108687,+!p2@REL!0.75!25.02!REL;;chr10:43932296..43932360,+!p1@ZNF487P!0.75!10.41!ZNF487P;;chr10:114710218..114710229,+!p4@TCF7L2!0.75!9.86!TCF7L2;;chr14:75746722..75746777,+!p2@FOS!0.75!6.03!FOS;;chr15:90544182..90544195,+!p7@ZNF710!0.75!4.57!ZNF710;;chr11:2292226..2292270,-!p1@ASCL2!0.75!4.57!ASCL2;;chr6:130339710..130339745,+!p1@L3MBTL3!0.74!39.82!L3MBTL3;;chr9:88969339..88969422,-!p2@ZCCHC6!0.74!38.72!ZCCHC6;;chr2:145277882..145277967,-!p3@ZEB2!0.74!8.22!ZEB2;;chr1:44679370..44679422,+!p3@DMAP1!0.74!6.21!DMAP1;;chr6:44233252..44233296,-!p1@NFKBIE!0.73!48.04!NFKBIE;;chr8:71316021..71316068,-!p1@NCOA2!0.73!45.48!NCOA2;;chr17:40440481..40440550,+!p1@STAT5A!0.73!35.07!STAT5A;;chrX:129244454..129244488,-!p1@ELF4!0.73!34.89!ELF4;;chr1:935467..935484,-!p1@HES4!0.73!21.55!HES4;;chr21:30671189..30671207,+!p4@BACH1!0.73!16.99!BACH1;;chr19:4067174..4067200,-!p9@ZBTB7A!0.73!5.48!ZBTB7A;;chr13:41593405..41593416,-!p9@ELF1!0.73!4.38!ELF1;;chrY:2803415..2803468,+!p1@ZFY!0.73!4.38!ZFY;;chr2:10183651..10183713,+!p1@KLF11!0.72!34.52!KLF11;;chr12:72056749..72056767,+!p6@THAP2!0.72!4.75!THAP2;;chr6:108880956..108881011,+!p1@FOXO3!0.71!30.87!FOXO3;;chr10:51572339..51572376,+!p4@NCOA4!0.71!10.23!NCOA4;;chr9:88969303..88969335,-!p1@ZCCHC6!0.70!42.74!ZCCHC6;;chr5:172483347..172483407,+!p1@C5orf41!0.70!33.98!CREBRF;;chr6:28092375..28092412,+!p1@ZSCAN16!0.70!18.63!ZSCAN16;;chr6:41040923..41040952,+!p2@NFYA!0.70!11.69!NFYA;;chr20:48807875..48807982,+!p2@CEBPB!0.69!98.46!CEBPB;;chr19:49140609..49140643,-!p1@DBP!0.69!25.02!DBP;;chr1:40367530..40367597,-!p1@MYCL1!0.69!7.67!MYCL1;;chr2:48541789..48541874,+!p1@FOXN2!0.68!99.00!FOXN2;;chr5:176738887..176738934,-!p1@MXD3!0.68!29.04!MXD3;;chr9:117160738..117160782,-!p2@AKNA!0.68!17.72!AKNA;;chr2:60780607..60780624,-!p2@BCL11A!0.68!12.97!BCL11A;;chr2:145274981..145274994,-!p9@ZEB2!0.68!5.85!ZEB2;;chr14:75988771..75988826,+!p1@BATF!0.68!5.30!BATF;;chr19:13213704..13213726,-!p3@LYL1!0.67!5.11!LYL1;;chr19:10416315..10416333,-!p1@ZGLP1!0.67!3.65!ZGLP1;;chr19:13213691..13213696,-!p9@LYL1!0.67!3.65!LYL1;;chr6:391743..391759,+!p1@IRF4!0.67!3.65!IRF4;;chr14:24630465..24630531,+!p1@IRF9!0.66!160.01!IRF9;;chr3:39195075..39195088,-!p1@CSRNP1!0.66!25.94!CSRNP1;;chr2:60780753..60780800,-!p1@BCL11A!0.66!19.91!BCL11A;;chr4:106067811..106067854,+!p2@TET2!0.66!19.00!TET2;;chr16:3313791..3313834,+!p2@ZNF263!0.66!8.77!ZNF263;;chr3:101546827..101546847,+!p2@NFKBIZ!0.66!5.30!NFKBIZ;;chr2:176033066..176033087,-!p2@ATF2!0.66!4.75!ATF2;;chr3:187463248..187463264,-!p1@BCL6!0.65!87.86!BCL6;;chr9:3525727..3525828,-!p2@RFX3!0.65!9.86!RFX3;;chr1:158979851..158979865,+!p5@IFI16!0.65!8.40!IFI16;;chr18:51750414..51750449,-!p5@MBD2!0.65!7.31!MBD2;;chr20:48807615..48807644,+!p6@CEBPB!0.65!6.21!CEBPB;;chr1:161014760..161014788,-!p4@USF1!0.65!3.47!USF1;;chr2:145275982..145276003,-!p7@ZEB2!0.65!3.47!ZEB2;;chr2:145277632..145277638,-!p17@ZEB2!0.65!3.47!ZEB2;;chr12:54694807..54694832,-!p3@NFE2!0.65!3.47!NFE2;;chr10:3827389..3827408,-!p1@KLF6!0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 +
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002396;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
 
|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
 
|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
 
|fonse_cell_line=
 
|fonse_cell_line=
Line 38: Line 42:
 
|fonse_treatment_closure=
 
|fonse_treatment_closure=
 
|has_quality=
 
|has_quality=
 +
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14-CD16%252b%2520Monocytes%252c%2520donor3.CNhs13548.11911-125G3.hg19.nobarcode.bam
 +
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14-CD16%252b%2520Monocytes%252c%2520donor3.CNhs13548.11911-125G3.hg19.ctss.bed.gz
 +
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14-CD16%252b%2520Monocytes%252c%2520donor3.CNhs13548.11911-125G3.hg19.nobarcode.rdna.fa.gz
 +
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14-CD16%252b%2520Monocytes%252c%2520donor3.CNhs13548.11911-125G3.hg38.nobarcode.bam
 +
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14-CD16%252b%2520Monocytes%252c%2520donor3.CNhs13548.11911-125G3.hg38.nobarcode.ctss.bed.gz
 
|id=FF:11911-125G3
 
|id=FF:11911-125G3
 
|is_a=EFO:0002091;;FF:0011100
 
|is_a=EFO:0002091;;FF:0011100
 
|is_obsolete=
 
|is_obsolete=
 +
|library_id=CNhs13548
 +
|library_id_phase_based=2:CNhs13548
 +
|microRNAs=
 +
|microRNAs_nn=
 +
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11911
 +
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11911
 
|name=CD14-CD16+ Monocytes, donor3
 
|name=CD14-CD16+ Monocytes, donor3
 
|namespace=
 
|namespace=
Line 48: Line 63:
 
|profile_rnaseq=
 
|profile_rnaseq=
 
|profile_srnaseq=
 
|profile_srnaseq=
 +
|refex=http://refex.dbcls.jp/genelist.php?lang
 
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Line 85: Line 101:
 
|top_motifs=HMX1:2.17358459849;SPI1:2.16959058435;NANOG{mouse}:2.08612122065;IRF1,2:2.03124168708;SPIB:1.98598218255;IRF7:1.72297356184;DMAP1_NCOR{1,2}_SMARC:1.62047714669;NFIL3:1.58472095762;RFX2..5_RFXANK_RFXAP:1.537588976;ETS1,2:1.5356601693;FOXN1:1.52455313459;TLX2:1.43432368088;FOX{I1,J2}:1.42428410685;ATF5_CREB3:1.40814981476;HES1:1.37645918115;ELF1,2,4:1.34068240508;ALX1:1.27487489034;TGIF1:1.27233419514;FOX{F1,F2,J1}:1.26235639884;CREB1:1.17136593201;SREBF1,2:1.1410315722;RUNX1..3:1.08669702394;FOXO1,3,4:1.02387223826;PAX2:0.994161791481;FOXA2:0.981337230708;GLI1..3:0.874317416334;MAFB:0.854782333563;ATF4:0.781962075617;TAL1_TCF{3,4,12}:0.742842854628;ESRRA:0.686313295703;NFKB1_REL_RELA:0.66411675413;FOX{D1,D2}:0.625162673142;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.623192401262;PAX8:0.597509899134;NR6A1:0.592943807411;CRX:0.526723642902;CDX1,2,4:0.514748898301;NR5A1,2:0.499547755828;EP300:0.4771646195;ELK1,4_GABP{A,B1}:0.476547105608;ATF2:0.457012373906;FOXP3:0.452998333662;BPTF:0.411619621085;HMGA1,2:0.401300571289;POU5F1:0.363980560366;PAX4:0.305808075175;FOXP1:0.305389360452;HIF1A:0.29497643267;RFX1:0.288241035403;HLF:0.287247237851;ALX4:0.276822861847;TOPORS:0.274131306204;CEBPA,B_DDIT3:0.262348998314;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.26061242531;NKX2-2,8:0.249472402739;JUN:0.23950486;NR1H4:0.208070896543;TFCP2:0.171708641091;FOXQ1:0.149514602226;ZBTB16:0.125093358267;ESR1:0.121291468053;HBP1_HMGB_SSRP1_UBTF:0.111665083255;PAX3,7:0.100165582616;FOSL2:0.0911431008124;ZNF148:0.0625633386228;EN1,2:0.0588187855357;HNF4A_NR2F1,2:0.0573132637169;NFIX:0.0533271611094;HOXA9_MEIS1:0.033903932754;MEF2{A,B,C,D}:0.030259295349;IKZF2:-0.00306040459385;TFAP4:-0.00927814591902;GATA6:-0.0142362413404;ATF6:-0.014480724345;NANOG:-0.0289221116117;OCT4_SOX2{dimer}:-0.0338920802384;EBF1:-0.0470009088671;PITX1..3:-0.0476884597469;RBPJ:-0.0589485531141;PDX1:-0.0622072526527;T:-0.0809019700316;RXRA_VDR{dimer}:-0.0946483427626;PBX1:-0.10205971528;PPARG:-0.105092891138;BACH2:-0.11439608932;POU2F1..3:-0.131106811687;FOS_FOS{B,L1}_JUN{B,D}:-0.144840882562;RORA:-0.150165792222;PRRX1,2:-0.208460143261;NFE2L2:-0.220781782862;STAT2,4,6:-0.223455990472;NFE2:-0.240505438153;AHR_ARNT_ARNT2:-0.250606190845;VSX1,2:-0.270127262888;GATA4:-0.275630341022;CUX2:-0.335457034629;MYB:-0.358019764021;SPZ1:-0.363667438146;HOX{A5,B5}:-0.36544468556;NHLH1,2:-0.378535104883;AIRE:-0.380198307662;FOXD3:-0.382220372973;SOX2:-0.393920141134;DBP:-0.396608869926;MYFfamily:-0.406436628826;ARID5B:-0.417663713776;AR:-0.421878145474;NFE2L1:-0.425969903251;POU1F1:-0.430343640689;HSF1,2:-0.441611511876;REST:-0.456897425689;GZF1:-0.471724652434;PAX1,9:-0.492373975031;SRF:-0.492729106674;MYOD1:-0.523705663941;HNF1A:-0.548555966804;HOX{A4,D4}:-0.562778364434;NKX2-3_NKX2-5:-0.576181419476;HOX{A6,A7,B6,B7}:-0.579489452908;SOX{8,9,10}:-0.584313062179;ADNP_IRX_SIX_ZHX:-0.616939498526;YY1:-0.644294015842;SOX5:-0.644308652012;BREu{core}:-0.652573014764;NFY{A,B,C}:-0.668594773581;PRDM1:-0.683531076466;STAT1,3:-0.716003182496;ZEB1:-0.721672104447;MTF1:-0.725290092274;FOXL1:-0.726020708265;ONECUT1,2:-0.772201501461;E2F1..5:-0.796118625588;NKX6-1,2:-0.80527941236;TFAP2{A,C}:-0.81209885558;LEF1_TCF7_TCF7L1,2:-0.851116329375;HAND1,2:-0.859040488445;NKX3-2:-0.892184588933;ZFP161:-0.930545180501;STAT5{A,B}:-0.935348971353;XBP1:-0.948919569282;RXR{A,B,G}:-0.970214739339;KLF4:-0.975784304132;SNAI1..3:-0.979496053413;NRF1:-0.992135148099;IKZF1:-1.04488759719;ZNF238:-1.06381755311;PAX5:-1.06886554073;LHX3,4:-1.07858992884;TP53:-1.07917670349;NKX3-1:-1.09925812321;TFAP2B:-1.10780472248;SMAD1..7,9:-1.11969387493;SP1:-1.13108256961;EGR1..3:-1.14338863887;MTE{core}:-1.14714192689;GFI1:-1.18034094628;TEF:-1.18562508092;PATZ1:-1.2033066402;GCM1,2:-1.22906200528;MZF1:-1.23632820274;MED-1{core}:-1.23702782726;PAX6:-1.24063091803;TBP:-1.24715847527;LMO2:-1.24763685657;ZNF423:-1.24983269535;GFI1B:-1.2595882729;ZIC1..3:-1.26254427512;MYBL2:-1.29675410988;TLX1..3_NFIC{dimer}:-1.30800566571;RREB1:-1.321984206;ZNF143:-1.32711101584;POU6F1:-1.33988153085;ZBTB6:-1.36484827666;TFDP1:-1.36629089407;HIC1:-1.39838671061;GTF2I:-1.39861830029;CDC5L:-1.39980562472;UFEwm:-1.45007689495;NKX2-1,4:-1.46273545419;NFATC1..3:-1.48968947668;EVI1:-1.49292331429;TEAD1:-1.52985165404;XCPE1{core}:-1.57140626629;MAZ:-1.57170027642;ZNF384:-1.61881984146;FOXM1:-1.64144279352;bHLH_family:-1.66409599212;NR3C1:-1.66706466589;GTF2A1,2:-1.83003327817;SOX17:-1.93983251086;TBX4,5:-1.95201806425;POU3F1..4:-2.28631157079
 
|top_motifs=HMX1:2.17358459849;SPI1:2.16959058435;NANOG{mouse}:2.08612122065;IRF1,2:2.03124168708;SPIB:1.98598218255;IRF7:1.72297356184;DMAP1_NCOR{1,2}_SMARC:1.62047714669;NFIL3:1.58472095762;RFX2..5_RFXANK_RFXAP:1.537588976;ETS1,2:1.5356601693;FOXN1:1.52455313459;TLX2:1.43432368088;FOX{I1,J2}:1.42428410685;ATF5_CREB3:1.40814981476;HES1:1.37645918115;ELF1,2,4:1.34068240508;ALX1:1.27487489034;TGIF1:1.27233419514;FOX{F1,F2,J1}:1.26235639884;CREB1:1.17136593201;SREBF1,2:1.1410315722;RUNX1..3:1.08669702394;FOXO1,3,4:1.02387223826;PAX2:0.994161791481;FOXA2:0.981337230708;GLI1..3:0.874317416334;MAFB:0.854782333563;ATF4:0.781962075617;TAL1_TCF{3,4,12}:0.742842854628;ESRRA:0.686313295703;NFKB1_REL_RELA:0.66411675413;FOX{D1,D2}:0.625162673142;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.623192401262;PAX8:0.597509899134;NR6A1:0.592943807411;CRX:0.526723642902;CDX1,2,4:0.514748898301;NR5A1,2:0.499547755828;EP300:0.4771646195;ELK1,4_GABP{A,B1}:0.476547105608;ATF2:0.457012373906;FOXP3:0.452998333662;BPTF:0.411619621085;HMGA1,2:0.401300571289;POU5F1:0.363980560366;PAX4:0.305808075175;FOXP1:0.305389360452;HIF1A:0.29497643267;RFX1:0.288241035403;HLF:0.287247237851;ALX4:0.276822861847;TOPORS:0.274131306204;CEBPA,B_DDIT3:0.262348998314;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.26061242531;NKX2-2,8:0.249472402739;JUN:0.23950486;NR1H4:0.208070896543;TFCP2:0.171708641091;FOXQ1:0.149514602226;ZBTB16:0.125093358267;ESR1:0.121291468053;HBP1_HMGB_SSRP1_UBTF:0.111665083255;PAX3,7:0.100165582616;FOSL2:0.0911431008124;ZNF148:0.0625633386228;EN1,2:0.0588187855357;HNF4A_NR2F1,2:0.0573132637169;NFIX:0.0533271611094;HOXA9_MEIS1:0.033903932754;MEF2{A,B,C,D}:0.030259295349;IKZF2:-0.00306040459385;TFAP4:-0.00927814591902;GATA6:-0.0142362413404;ATF6:-0.014480724345;NANOG:-0.0289221116117;OCT4_SOX2{dimer}:-0.0338920802384;EBF1:-0.0470009088671;PITX1..3:-0.0476884597469;RBPJ:-0.0589485531141;PDX1:-0.0622072526527;T:-0.0809019700316;RXRA_VDR{dimer}:-0.0946483427626;PBX1:-0.10205971528;PPARG:-0.105092891138;BACH2:-0.11439608932;POU2F1..3:-0.131106811687;FOS_FOS{B,L1}_JUN{B,D}:-0.144840882562;RORA:-0.150165792222;PRRX1,2:-0.208460143261;NFE2L2:-0.220781782862;STAT2,4,6:-0.223455990472;NFE2:-0.240505438153;AHR_ARNT_ARNT2:-0.250606190845;VSX1,2:-0.270127262888;GATA4:-0.275630341022;CUX2:-0.335457034629;MYB:-0.358019764021;SPZ1:-0.363667438146;HOX{A5,B5}:-0.36544468556;NHLH1,2:-0.378535104883;AIRE:-0.380198307662;FOXD3:-0.382220372973;SOX2:-0.393920141134;DBP:-0.396608869926;MYFfamily:-0.406436628826;ARID5B:-0.417663713776;AR:-0.421878145474;NFE2L1:-0.425969903251;POU1F1:-0.430343640689;HSF1,2:-0.441611511876;REST:-0.456897425689;GZF1:-0.471724652434;PAX1,9:-0.492373975031;SRF:-0.492729106674;MYOD1:-0.523705663941;HNF1A:-0.548555966804;HOX{A4,D4}:-0.562778364434;NKX2-3_NKX2-5:-0.576181419476;HOX{A6,A7,B6,B7}:-0.579489452908;SOX{8,9,10}:-0.584313062179;ADNP_IRX_SIX_ZHX:-0.616939498526;YY1:-0.644294015842;SOX5:-0.644308652012;BREu{core}:-0.652573014764;NFY{A,B,C}:-0.668594773581;PRDM1:-0.683531076466;STAT1,3:-0.716003182496;ZEB1:-0.721672104447;MTF1:-0.725290092274;FOXL1:-0.726020708265;ONECUT1,2:-0.772201501461;E2F1..5:-0.796118625588;NKX6-1,2:-0.80527941236;TFAP2{A,C}:-0.81209885558;LEF1_TCF7_TCF7L1,2:-0.851116329375;HAND1,2:-0.859040488445;NKX3-2:-0.892184588933;ZFP161:-0.930545180501;STAT5{A,B}:-0.935348971353;XBP1:-0.948919569282;RXR{A,B,G}:-0.970214739339;KLF4:-0.975784304132;SNAI1..3:-0.979496053413;NRF1:-0.992135148099;IKZF1:-1.04488759719;ZNF238:-1.06381755311;PAX5:-1.06886554073;LHX3,4:-1.07858992884;TP53:-1.07917670349;NKX3-1:-1.09925812321;TFAP2B:-1.10780472248;SMAD1..7,9:-1.11969387493;SP1:-1.13108256961;EGR1..3:-1.14338863887;MTE{core}:-1.14714192689;GFI1:-1.18034094628;TEF:-1.18562508092;PATZ1:-1.2033066402;GCM1,2:-1.22906200528;MZF1:-1.23632820274;MED-1{core}:-1.23702782726;PAX6:-1.24063091803;TBP:-1.24715847527;LMO2:-1.24763685657;ZNF423:-1.24983269535;GFI1B:-1.2595882729;ZIC1..3:-1.26254427512;MYBL2:-1.29675410988;TLX1..3_NFIC{dimer}:-1.30800566571;RREB1:-1.321984206;ZNF143:-1.32711101584;POU6F1:-1.33988153085;ZBTB6:-1.36484827666;TFDP1:-1.36629089407;HIC1:-1.39838671061;GTF2I:-1.39861830029;CDC5L:-1.39980562472;UFEwm:-1.45007689495;NKX2-1,4:-1.46273545419;NFATC1..3:-1.48968947668;EVI1:-1.49292331429;TEAD1:-1.52985165404;XCPE1{core}:-1.57140626629;MAZ:-1.57170027642;ZNF384:-1.61881984146;FOXM1:-1.64144279352;bHLH_family:-1.66409599212;NR3C1:-1.66706466589;GTF2A1,2:-1.83003327817;SOX17:-1.93983251086;TBX4,5:-1.95201806425;POU3F1..4:-2.28631157079
 
|xref=
 
|xref=
 +
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11911-125G3;search_select_hide=table117:FF:11911-125G3
 
}}
 
}}

Latest revision as of 09:28, 4 June 2020

Name:CD14-CD16+ Monocytes, donor3
Species:Human (Homo sapiens)
Library ID:CNhs13548
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexmale
age23
cell typemonocyte
cell lineNA
companyNA
collaborationMichael Rehli (University of Regensberg)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number43-44
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005535
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13548 CAGE DRX008169 DRR009041
Accession ID Hg19

Library idBAMCTSS
CNhs13548 DRZ000466 DRZ001851
Accession ID Hg38

Library idBAMCTSS
CNhs13548 DRZ011816 DRZ013201
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
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Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis--0.102
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.0729
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma--0.296
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.135
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.135
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.0729
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.391
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.163
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.14
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.442
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.238
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle--0.249
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.551
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.135
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0.0912
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed--0.112
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.135
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte--0.111
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus--0.387
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.864
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.613
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.358
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.557
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.473
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0729
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.68
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.0729
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0797
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.419
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small--0.634
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.421
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340.504
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral1.122
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0288
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.302
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood1.063
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0.238
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.513
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.135
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.19
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole1.006
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs13548

Jaspar motif P-value
MA0002.2 4.23902e-7
MA0003.1 0.0567
MA0004.1 0.497
MA0006.1 0.998
MA0007.1 0.98
MA0009.1 0.356
MA0014.1 0.426
MA0017.1 0.00446
MA0018.2 0.0493
MA0019.1 0.658
MA0024.1 0.0154
MA0025.1 0.0381
MA0027.1 0.727
MA0028.1 0.174
MA0029.1 0.296
MA0030.1 0.243
MA0031.1 0.375
MA0035.2 0.878
MA0038.1 0.209
MA0039.2 0.396
MA0040.1 0.365
MA0041.1 0.418
MA0042.1 0.307
MA0043.1 0.00523
MA0046.1 0.0521
MA0047.2 0.07
MA0048.1 0.841
MA0050.1 1.11814e-14
MA0051.1 1.75684e-6
MA0052.1 0.631
MA0055.1 0.932
MA0057.1 0.868
MA0058.1 0.333
MA0059.1 0.562
MA0060.1 3.45415e-4
MA0061.1 0.00371
MA0062.2 3.47867e-6
MA0065.2 0.0132
MA0066.1 0.225
MA0067.1 0.00276
MA0068.1 0.397
MA0069.1 0.884
MA0070.1 0.00509
MA0071.1 0.0848
MA0072.1 0.59
MA0073.1 0.54
MA0074.1 0.516
MA0076.1 0.104
MA0077.1 0.113
MA0078.1 0.88
MA0079.2 0.566
MA0080.2 3.82099e-16
MA0081.1 4.35811e-5
MA0083.1 0.452
MA0084.1 0.578
MA0087.1 0.363
MA0088.1 0.504
MA0090.1 0.0123
MA0091.1 0.437
MA0092.1 0.485
MA0093.1 0.566
MA0099.2 0.149
MA0100.1 0.973
MA0101.1 0.026
MA0102.2 2.13299e-4
MA0103.1 0.36
MA0104.2 0.414
MA0105.1 1.03579e-5
MA0106.1 0.61
MA0107.1 0.0119
MA0108.2 9.93058e-9
MA0111.1 0.289
MA0112.2 6.71577e-4
MA0113.1 0.909
MA0114.1 0.0514
MA0115.1 0.303
MA0116.1 2.17121e-5
MA0117.1 0.43
MA0119.1 0.292
MA0122.1 0.71
MA0124.1 0.229
MA0125.1 0.358
MA0131.1 0.529
MA0135.1 0.904
MA0136.1 8.3775e-20
MA0137.2 0.55
MA0138.2 0.56
MA0139.1 0.825
MA0140.1 0.872
MA0141.1 0.0196
MA0142.1 0.499
MA0143.1 0.82
MA0144.1 0.798
MA0145.1 0.232
MA0146.1 0.0382
MA0147.1 0.45
MA0148.1 0.525
MA0149.1 0.0603
MA0150.1 0.0427
MA0152.1 0.0628
MA0153.1 0.0127
MA0154.1 0.00203
MA0155.1 0.959
MA0156.1 3.66697e-12
MA0157.1 0.173
MA0159.1 0.0637
MA0160.1 0.00984
MA0162.1 0.698
MA0163.1 2.11583e-12
MA0164.1 0.93
MA0258.1 0.0103
MA0259.1 0.81



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs13548

Novel motif P-value
1 0.0869
10 0.0254
100 0.787
101 0.323
102 0.452
103 0.312
104 0.567
105 0.351
106 0.0194
107 0.815
108 0.861
109 0.0306
11 0.157
110 0.231
111 0.0324
112 0.233
113 0.387
114 0.00666
115 0.336
116 0.946
117 0.0192
118 0.123
119 0.275
12 0.296
120 0.859
121 0.963
122 0.56
123 2.30124e-4
124 0.349
125 0.0575
126 0.158
127 0.351
128 0.0977
129 0.982
13 0.125
130 0.275
131 0.878
132 0.0416
133 0.164
134 0.716
135 0.12
136 0.744
137 1.07535e-4
138 0.281
139 0.0129
14 0.393
140 0.212
141 0.513
142 0.934
143 0.158
144 0.979
145 0.287
146 0.994
147 0.428
148 0.0576
149 0.73
15 0.135
150 0.525
151 0.259
152 0.343
153 0.609
154 0.783
155 0.0743
156 0.861
157 0.738
158 0.151
159 0.223
16 0.482
160 0.5
161 0.575
162 0.647
163 0.265
164 0.113
165 0.126
166 0.477
167 0.048
168 0.554
169 0.0142
17 0.367
18 0.215
19 0.289
2 0.955
20 0.454
21 0.419
22 0.301
23 0.327
24 0.301
25 0.1
26 0.0656
27 0.55
28 0.478
29 0.08
3 0.0837
30 0.347
31 0.604
32 0.618
33 0.176
34 0.593
35 0.159
36 0.027
37 0.0547
38 0.471
39 0.737
4 0.918
40 0.146
41 0.0697
42 0.275
43 0.0869
44 0.617
45 0.943
46 0.139
47 0.331
48 0.353
49 0.0867
5 0.108
50 0.952
51 0.406
52 0.335
53 0.262
54 0.432
55 0.305
56 0.792
57 0.761
58 0.0289
59 0.148
6 0.782
60 0.0453
61 0.233
62 0.00807
63 0.513
64 0.343
65 0.37
66 0.367
67 0.249
68 0.825
69 0.608
7 0.136
70 0.0207
71 0.0456
72 0.244
73 0.137
74 0.385
75 0.032
76 0.214
77 0.628
78 0.27
79 0.267
8 0.282
80 0.315
81 0.182
82 0.146
83 0.746
84 0.696
85 0.0549
86 0.087
87 0.201
88 0.515
89 0.751
9 0.338
90 0.0542
91 0.46
92 0.482
93 0.444
94 0.0209
95 0.0637
96 0.281
97 0.982
98 0.104
99 0.0737



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs13548


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000875 (non-classical monocyte)
0002396 (CD14-low, CD16-positive monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0011100 (human CD14-CD16-positive Monocytes sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)