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{{f5samples
 
{{f5samples
|DRA_sample_Accession=RNA-Seq@SAMD00013694!CAGE@SAMD00005312
+
|DRA_sample_Accession=RNA-Seq@SAMD00013694
|accession_numbers=CAGE;DRX008070;DRR008942;DRZ000367;DRZ001752!RNA-Seq;DRX012351;DRR013799;DRZ003000;NA
+
|accession_numbers=CAGE;DRX008070;DRR008942;DRZ000367;DRZ001752;DRZ011717;DRZ013102!RNA-Seq;DRX012351;DRR013799;DRZ003000;
 
|ancestors_in_anatomy_facet=
 
|ancestors_in_anatomy_facet=
 
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000625
 
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000625
Line 13: Line 13:
 
|def=
 
|def=
 
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.00!99.92!PLEK;;chr5:133451294..133451310,+!p2@TCF7!1.95!87.61!TCF7;;chr17:45810594..45810608,+!p1@TBX21!1.82!65.59!TBX21;;chr3:27763807..27763822,-!p1@EOMES!1.82!65.11!EOMES;;chr2:192015701..192015743,-!p1@STAT4!1.81!85.95!STAT4;;chr3:63953435..63953499,+!p1@ATXN7!1.80!62.04!ATXN7;;chr9:117150254..117150271,-!p1@AKNA!1.72!136.86!AKNA;;chr4:109087445..109087463,-!p1@LEF1!1.72!51.62!LEF1;;chr7:50343634..50343717,+!p2@IKZF1!1.71!50.67!IKZF1;;chr1:25256756..25256774,-!p1@RUNX3!1.68!86.19!RUNX3;;chr2:231090433..231090469,+!p1@SP140!1.68!46.65!SP140;;chr2:192015750..192015793,-!p2@STAT4!1.67!61.33!STAT4;;chr5:133450365..133450444,+!p1@TCF7!1.66!194.39!TCF7;;chr2:68592394..68592405,+!p2@PLEK!1.61!39.54!PLEK;;chr17:37934365..37934387,-!p2@IKZF3!1.61!39.31!IKZF3;;chr11:47400078..47400106,-!p1@SPI1!1.55!34.57!SPI1;;chr14:75988771..75988826,+!p1@BATF!1.53!43.80!BATF;;chr19:16435625..16435682,+!p1@KLF2!1.51!950.90!KLF2;;chr7:50344251..50344288,+!p3@IKZF1!1.47!28.41!IKZF1;;chr20:50159198..50159299,-!p1@NFATC2!1.46!40.02!NFATC2;;chr1:26697243..26697258,-!p1@ZNF683!1.46!27.70!ZNF683;;chr5:133451347..133451358,+!p3@TCF7!1.45!27.23!TCF7;;chr6:106546808..106546833,+!p3@PRDM1!1.36!27.47!PRDM1;;chr19:19779619..19779670,+!p1@ZNF101!1.34!57.77!ZNF101;;chr4:109090075..109090095,-!p2@LEF1!1.34!20.84!LEF1;;chr20:56195474..56195506,-!p1@ZBP1!1.33!20.36!ZBP1;;chr4:57522166..57522260,-!p2@HOPX!1.31!22.49!HOPX;;chr3:18486354..18486377,-!p2@SATB1!1.30!23.68!SATB1;;chr2:231090471..231090504,+!p2@SP140!1.29!18.71!SP140;;chr7:50343895..50343936,+!p5@IKZF1!1.29!18.71!IKZF1;;chr15:60884706..60884743,-!p1@RORA!1.27!89.50!RORA;;chr3:71355163..71355209,-!p5@FOXP1!1.27!24.62!FOXP1;;chr7:50344289..50344323,+!p1@IKZF1!1.27!17.52!IKZF1;;chr13:74707894..74707947,-!p6@KLF12!1.26!19.18!KLF12;;chr17:37934204..37934241,-!p3@IKZF3!1.26!17.28!IKZF3;;chr13:41593425..41593480,-!p1@ELF1!1.25!105.84!ELF1;;chr10:8096772..8096787,+!p2@GATA3!1.25!19.65!GATA3;;chr3:71542615..71542644,-!p12@FOXP1!1.25!16.81!FOXP1;;chr6:391743..391759,+!p1@IRF4!1.24!16.34!IRF4;;chr10:8096631..8096660,+!p1@GATA3!1.23!19.42!GATA3;;chr4:57522598..57522664,-!p3@HOPX!1.23!16.10!HOPX;;chr3:71542684..71542720,-!p18@FOXP1!1.20!14.68!FOXP1;;chr17:38020392..38020477,-!p1@IKZF3!1.20!14.68!IKZF3;;chr8:67525443..67525459,-!p2@MYBL1!1.18!21.31!MYBL1;;chr17:37934280..37934299,-!p6@IKZF3!1.18!13.97!IKZF3;;chr11:128392273..128392308,-!p2@ETS1!1.16!57.06!ETS1;;chr11:128392085..128392232,-!p1@ETS1!1.14!427.62!ETS1;;chr11:128563948..128564003,+!p1@FLI1!1.12!146.57!FLI1;;chr17:38020557..38020572,-!p4@IKZF3!1.12!12.08!IKZF3;;chr21:36421535..36421610,-!p2@RUNX1!1.10!41.91!RUNX1;;chr14:64970670..64970712,-!p3@ZBTB25!1.08!24.15!ZBTB25;;chr4:109089901..109089930,-!p3@LEF1!1.08!11.13!LEF1;;chr17:38020516..38020544,-!p5@IKZF3!1.08!10.89!IKZF3;;chr8:60031619..60031676,-!p1@TOX!1.07!23.20!TOX;;chr6:106546731..106546755,+!p5@PRDM1!1.07!10.65!PRDM1;;chr21:36421347..36421380,-!p8@RUNX1!1.07!10.65!RUNX1;;chr6:91006518..91006570,-!p1@BACH2!1.06!24.39!BACH2;;chr1:92951607..92951661,-!p1@GFI1!1.06!10.42!GFI1;;chr4:57522674..57522699,-!p5@HOPX!1.06!10.42!HOPX;;chr2:97202991..97203043,+!p3@ARID5A!1.05!10.18!ARID5A;;chr3:71542651..71542683,-!p22@FOXP1!1.05!10.18!FOXP1;;chr14:75988831..75988847,+!p2@BATF!1.03!9.71!BATF;;chr19:38085768..38085821,+!p1@ZNF540!1.02!14.21!ZNF540;;chrX:106960285..106960299,-!p1@TSC22D3!1.01!254.06!TSC22D3;;chr16:89789271..89789291,+!p5@ZNF276!1.01!9.23!ZNF276;;chr12:54778471..54778528,-!p1@ZNF385A!1.01!9.23!ZNF385A;;chr14:69262947..69262986,-!p3@ZFP36L1!1.00!10.89!ZFP36L1;;chr11:47400062..47400077,-!p2@SPI1!1.00!9.00!SPI1;;chr17:38020481..38020506,-!p7@IKZF3!0.99!8.76!IKZF3;;chr3:18480217..18480239,-!p3@SATB1!0.98!8.52!SATB1;;chr4:109088940..109089037,-!p4@LEF1!0.97!8.29!LEF1;;chr3:71179699..71179744,-!p2@FOXP1!0.96!62.04!FOXP1;;chr19:53289995..53290050,-!p1@ZNF600!0.96!34.10!ZNF600;;chr9:3525727..3525828,-!p2@RFX3!0.96!21.07!RFX3;;chr2:178128250..178128293,-!p6@NFE2L2!0.96!20.84!NFE2L2;;chr8:67525473..67525518,-!p1@MYBL1!0.96!19.18!MYBL1;;chr4:109089573..109089585,-!p8@LEF1!0.96!8.05!LEF1;;chr16:88752889..88752921,-!p1@SNAI3!0.95!9.23!SNAI3;;chr16:79634624..79634642,-!p1@MAF!0.93!30.78!MAF;;chr7:137620650..137620677,-!p3@CREB3L2!0.93!7.58!CREB3L2;;chr7:50343864..50343888,+!p7@IKZF1!0.93!7.58!IKZF1;;chr8:72756023..72756055,-!p6@MSC!0.92!9.23!MSC;;chr4:109088089..109088101,-!p11@LEF1!0.92!7.34!LEF1;;chr2:231090344..231090361,-!p3@SP110!0.91!7.10!SP110;;chr3:18487057..18487105,-!p4@SATB1!0.91!7.10!SATB1;;chrX:49121165..49121179,-!p1@FOXP3!0.91!7.10!FOXP3;;chr20:56195525..56195556,-!p2@ZBP1!0.91!7.10!ZBP1;;chr12:54694758..54694805,-!p1@NFE2!0.90!8.52!NFE2;;chr7:50348268..50348366,+!p4@IKZF1!0.90!6.87!IKZF1;;chr19:20748574..20748599,-!p1@ZNF737!0.89!43.09!ZNF737;;chr4:185395633..185395651,-!p2@IRF2!0.89!11.13!IRF2;;chr4:81104895..81104920,+!p2@PRDM8!0.88!10.18!PRDM8;;chr16:85932760..85932775,+!p1@IRF8!0.88!6.63!IRF8;;chr7:50344144..50344157,+!p6@IKZF1!0.88!6.63!IKZF1;;chr16:68119324..68119364,+!p1@NFATC3!0.87!30.54!NFATC3;;chr15:60884747..60884774,-!p3@RORA!0.87!16.34!RORA;;chr13:74708029..74708077,-!p2@KLF12!0.86!18.94!KLF12;;chr16:3313791..3313834,+!p2@ZNF263!0.85!14.21!ZNF263;;chr16:79634595..79634620,-!p2@MAF!0.85!11.60!MAF;;chr9:117150303..117150312,-!p3@AKNA!0.85!7.81!AKNA;;chr2:145277640..145277771,-!p1@ZEB2!0.84!85.24!ZEB2;;chrX:101186981..101187030,-!p1@ZMAT1!0.84!20.36!ZMAT1;;chr17:36861675..36861697,+!p3@MLLT6!0.84!14.44!MLLT6;;chr20:52226313..52226350,-!p3@ZNF217!0.84!5.92!ZNF217;;chr9:114287433..114287513,+!p1@ZNF483!0.83!15.63!ZNF483;;chr19:9546177..9546224,-!p1@ZNF266!0.82!43.09!ZNF266;;chr16:89787937..89787971,+!p1@ZNF276!0.82!15.39!ZNF276;;chr6:106546786..106546802,+!p6@PRDM1!0.82!5.68!PRDM1;;chr8:60031563..60031574,-!p7@TOX!0.82!5.68!TOX;;chr6:143266297..143266356,-!p1@HIVEP2!0.81!28.41!HIVEP2;;chr7:21467674..21467727,+!p1@SP4!0.81!23.44!SP4;;chr2:148778973..148779035,+!p3@MBD5!0.81!15.15!MBD5;;chr16:79633894..79633954,-!p3@MAF!0.81!10.89!MAF;;chr19:19779686..19779697,+!p3@ZNF101!0.81!6.39!ZNF101;;chr14:99738138..99738163,-!p1@BCL11B!0.81!5.45!BCL11B;;chr17:56565257..56565283,-!p2@HSF5!0.81!5.45!HSF5;;chr3:71542747..71542766,-!p34@FOXP1!0.81!5.45!FOXP1;;chr4:149363494..149363543,-!p1@NR3C2!0.81!5.45!NR3C2;;chr6:106546834..106546850,+!p4@PRDM1!0.81!5.45!PRDM1;;chr17:36861735..36861755,+!p4@MLLT6!0.80!9.47!MLLT6;;chr19:44331461..44331482,+!p3@ZNF283!0.80!9.00!ZNF283;;chr4:38665769..38665801,+!p2@KLF3!0.79!51.38!KLF3;;chr19:49140609..49140643,-!p1@DBP!0.79!31.73!DBP;;chr7:115670804..115670825,-!p1@TFEC!0.79!5.21!TFEC;;chr4:109088130..109088163,-!p13@LEF1!0.79!5.21!LEF1;;chr4:57522513..57522548,-!p4@HOPX!0.79!5.21!HOPX;;chr16:89789248..89789270,+!p8@ZNF276!0.79!5.21!ZNF276;;chr19:9546227..9546257,-!p2@ZNF266!0.78!27.94!ZNF266;;chr17:46621311..46621332,-!p8@HOXB2!0.78!6.63!HOXB2;;chr2:100759037..100759058,-!p2@AFF3!0.78!4.97!AFF3;;chr11:128392309..128392350,-!p3@ETS1!0.77!12.55!ETS1;;chr19:19729477..19729542,-!p1@PBX4!0.77!11.13!PBX4;;chr18:5295679..5295734,-!p2@ZFP161!0.76!11.13!ZFP161;;chr5:131826457..131826514,-!p1@IRF1!0.75!202.44!IRF1;;chr14:90085458..90085557,-!p1@FOXN3!0.75!53.99!FOXN3;;chr5:172483347..172483407,+!p1@C5orf41!0.75!38.36!CREBRF;;chr19:52674696..52674758,-!p1@ZNF836!0.75!14.92!ZNF836;;chrX:131623982..131624011,-!p6@MBNL3!0.75!7.10!MBNL3;;chr3:114819124..114819200,-!p3@ZBTB20!0.74!11.37!ZBTB20;;chr20:51588873..51588953,+!p1@TSHZ2!0.74!6.16!TSHZ2;;chr4:81104865..81104886,+!p6@PRDM8!0.74!4.97!PRDM8;;chr3:18466787..18466839,-!p1@SATB1!0.73!21.78!SATB1;;chr8:67525524..67525543,-!p3@MYBL1!0.73!7.58!MYBL1;;chr9:32550965..32551031,-!p4@TOPORS!0.73!7.10!TOPORS;;chr10:8095593..8095625,+!p3@GATA3!0.73!5.21!GATA3;;chr7:137620684..137620711,-!p4@CREB3L2!0.72!4.26!CREB3L2;;chr1:26697189..26697205,-!p2@ZNF683!0.72!4.26!ZNF683;;chr10:3827417..3827428,-!p3@KLF6!0.70!39.07!KLF6;;chr19:12405606..12405629,-!p2@ZNF44!0.70!8.52!ZNF44;;chr19:12444440..12444455,-!p1@ZNF563!0.70!7.34!ZNF563;;chr20:44600199..44600219,-!p3@ZNF335!0.70!5.68!ZNF335;;chr6:12009042..12009092,+!p6@HIVEP1!0.70!5.45!HIVEP1;;chr6:45296048..45296082,+!p1@RUNX2!0.70!4.74!RUNX2;;chr1:25291475..25291511,-!p2@RUNX3!0.70!4.03!RUNX3;;chr4:109086281..109086319,-!p9@LEF1!0.70!4.03!LEF1;;chr2:231084659..231084721,-!p1@SP110!0.69!105.37!SP110;;chr11:13299319..13299424,+!p1@ARNTL!0.69!44.75!ARNTL;;chr6:157098579..157098634,+!p4@ARID1B!0.69!9.71!ARID1B;;chr10:43134001..43134026,-!p1@ZNF33B!0.68!19.18!ZNF33B;;chr19:56632858..56632903,-!p2@ZNF787!0.68!10.18!ZNF787;;chr1:61542922..61542955,+!p10@NFIA!0.68!3.79!NFIA;;chr4:149365827..149365870,-!p5@NR3C2!0.68!3.79!NR3C2;;chr19:37464063..37464127,+!p2@ZNF568!0.67!4.97!ZNF568;;chr2:97202480..97202499,+!p1@ARID5A!0.66!42.15!ARID5A;;chr19:53466095..53466149,-!p1@ZNF321P,p1@ZNF816-ZNF321P,p1@ZNF816!0.66!17.05!ZNF816;;chr4:57775059..57775139,+!p2@REST!0.66!14.21!REST;;chr17:42295777..42295816,-!p7@UBTF!0.66!4.50!UBTF;;chr13:74708246..74708264,-!p8@KLF12!0.66!4.03!KLF12;;chr10:8097591..8097627,+!p7@GATA3!0.66!3.55!GATA3;;chr17:38020607..38020621,-!p9@IKZF3!0.66!3.55!IKZF3;;chr1:158979686..158979745,+!p1@IFI16!0.65!134.73!IFI16;;chr7:99097863..99097936,-!p1@ZNF394!0.65!40.49!ZNF394;;chr7:77428066..77428132,+!p2@PHTF2!0.65!25.81!PHTF2;;chr19:37569314..37569381,+!p1@ZNF420!0.65!14.21!ZNF420;;chr19:58220517..58220583,-!p1@ZNF154!0.65!12.31!ZNF154;;chr6:12008986..12009016,+!p3@HIVEP1!0.65!12.31!HIVEP1;;chr8:123793860..123793921,+!p2@ZHX2!0.65!10.65!ZHX2;;chr14:69262789..69262822,-!p2@ZFP36L1!0.65!10.18!ZFP36L1;;chr6:15249128..15249177,+!p4@JARID2!0.65!6.87!JARID2;;chr6:45390269..45390298,+!p5@RUNX2!0.65!6.16!RUNX2;;chr1:10754477..10754517,-!p1@CASZ1!0.65!6.16!CASZ1;;chr6:91006575..91006602,-!p2@BACH2!0.65!5.45!BACH2;;chr2:70142232..70142251,+!p1@MXD1!0.64!22.02!MXD1;;chr19:12405645..12405685,-!p1@ZNF44!0.64!13.50!ZNF44;;chr14:58765217..58765301,+!p1@ARID4A!0.63!34.57!ARID4A;;chr9:88969339..88969422,-!p2@ZCCHC6!0.63!30.07!ZCCHC6;;chr9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22220,+!p2@ARID1A!0.26!11.60!ARID1A;;chr19:57999101..57999158,+!p1@ZNF419!0.26!10.65!ZNF419;;chr8:146228270..146228295,-!p1@ZNF252!0.26!8.52!ZNF252P;;chr17:42298615..42298692,-!p2@UBTF!0.26!7.81!UBTF;;chr19:58400372..58400411,-!p1@ZNF814!0.26!7.81!ZNF814;;chr19:59084647..59084721,-!p1@MZF1!0.26!7.34!MZF1;;chr1:205601000..205601055,-!p2@ELK4!0.26!6.16!ELK4;;chrX:47863348..47863412,-!p1@ZNF182!0.26!5.92!ZNF182;;chr19:44556158..44556206,+!p1@ZNF223!0.26!5.68!ZNF223;;chr19:44439420..44439447,-!p1@ZNF45!0.26!5.45!ZNF45;;chr3:150126136..150126158,+!p4@TSC22D2!0.26!5.21!TSC22D2;;chr4:103422471..103422495,+!p2@NFKB1!0.26!3.79!NFKB1;;chr19:8942962..8942987,-!p1@ZNF558!0.26!3.79!ZNF558;;chr19:36705547..36705597,-!p1@ZNF565!0.26!3.55!ZNF565;;chr3:107241882..107241904,+!p2@BBX!0.26!3.31!BBX;;chr9:32550839..32550962,-!p3@TOPORS!0.26!3.31!TOPORS;;chr14:74253834..74253862,-!p5@C14orf43!0.26!3.31!C14orf43;;chr15:56535946..56535987,-!p1@RFX7!0.26!3.08!RFX7;;chr6:42419514..42419606,-!p1@TRERF1!0.26!2.84!TRERF1;;chrX:101975643..101975683,+!p1@BHLHB9!0.26!2.84!BHLHB9;;chr9:73028387..73028418,-!p4@KLF9!0.26!2.60!KLF9;;chr7:21467802..21467840,+!p3@SP4!0.26!2.60!SP4;;chr1:37940102..37940131,+!p2@ZC3H12A!0.26!2.60!ZC3H12A;;chr20:25677399..25677433,-!p3@ZNF337!0.26!2.37!ZNF337;;chr2:208030886..208030917,-!p4@KLF7!0.26!2.37!KLF7;;chr17:42297282..42297300,-!p9@UBTF!0.26!2.13!UBTF;;chr6:27356745..27356777,+!p1@ZNF391!0.26!1.89!ZNF391;;chr18:51751066..51751077,-!p6@MBD2!0.26!1.66!MBD2;;chr15:100106126..100106135,+!p6@MEF2A!0.26!1.42!MEF2A;;chr17:38465441..38465481,+!p6@RARA!0.26!1.18!RARA;;chr5:150284461..150284481,-!p4@ZNF300!0.26!1.18!ZNF300;;chr2:37458692..37458745,-!p1@CEBPZ!0.25!59.90!CEBPZ;;chr7:127032741..127032777,-!p1@ZNF800!0.25!55.41!ZNF800;;chr16:3930681..3930721,-!p1@CREBBP!0.25!27.94!CREBBP;;chr3:169491171..169491205,+!p1@MYNN!0.25!27.47!MYNN;;chr1:91487553..91487612,-!p1@ZNF644!0.25!26.99!ZNF644;;chr9:125675576..125675612,-!p1@ZBTB6!0.25!19.89!ZBTB6;;chr7:64254793..64254813,+!p1@ZNF138!0.25!18.00!ZNF138;;chr4:7045042..7045145,+!p1@TADA2B!0.25!11.37!TADA2B;;chr1:157108130..157108173,-!p1@ETV3!0.25!10.89!ETV3;;chr9:95640300..95640345,-!p1@ZNF484!0.25!8.29!ZNF484;;chr19:53360870..53360873,-!p1@ZNF468!0.25!5.21!ZNF468;;chr19:19496577..19496619,+!p5@GATAD2A!0.25!4.74!GATAD2A;;chr19:36909484..36909525,-!p2@ZFP82!0.25!2.37!ZFP82;;chr16:30621615..30621660,-!p2@ZNF689!0.25!2.13!ZNF689;;chr18:3449695..3449712,+!p9@TGIF1!0.25!1.66!TGIF1;;chr1:78149224..78149235,-!p3@ZZZ3!0.25!1.42!ZZZ3;;chr15:77197781..77197801,-!p3@SCAPER!0.25!0.95!SCAPER;;chr6:44355478..44355489,+!p5@CDC5L!0.25!0.95!CDC5L;;chr5:150080543..150080664,-!p1@RBM22!0.24!67.72!RBM22;;chr2:113012592..113012671,-!p1@ZC3H8!0.24!26.52!ZC3H8;;chr16:67876180..67876242,+!p1@THAP11!0.24!25.81!THAP11;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.24!14.44!ZNF595;;chr7:64023441..64023462,-!p1@ZNF680!0.24!11.84!ZNF680;;chr1:6640046..6640101,+!p1@ZBTB48!0.24!11.60!ZBTB48;;chr19:44716678..44716732,+!p1@ZNF227!0.24!10.18!ZNF227;;chr19:12175535..12175554,+!p1@ZNF844!0.24!7.81!ZNF844;;chr3:113415441..113415500,-!p1@KIAA2018!0.24!7.81!KIAA2018;;chr4:140005341..140005411,-!p3@ELF2!0.24!7.81!ELF2;;chr19:9434841..9434886,+!p1@ZNF559!0.24!7.34!ZNF559;;chr6:20403916..20403965,+!p3@E2F3!0.24!6.39!E2F3;;chr19:33793430..33793447,-!p1@CEBPA!0.24!5.92!CEBPA;;chr17:42297028..42297056,-!p3@UBTF!0.24!5.68!UBTF;;chr3:101395936..101395962,-!p2@ZBTB11!0.24!5.45!ZBTB11;;chr1:117602932..117602973,+!p1@TTF2!0.24!5.21!TTF2;;chr1:40997285..40997352,+!p1@ZNF684!0.24!4.74!ZNF684;;chr19:57751980..57752019,+!p2@ZNF805!0.24!4.50!ZNF805;;chr19:37096194..37096235,+!p1@ZNF382!0.24!4.26!ZNF382;;chr14:35872453..35872485,-!p2@NFKBIA!0.24!3.08!NFKBIA;;chr12:19671171..19671175,+!p4@AEBP2!0.24!2.84!AEBP2;;chr1:249153232..249153251,-!p2@ZNF692!0.24!2.84!ZNF692;;chr1:28995231..28995250,+!p2@GMEB1!0.24!2.37!GMEB1;;chr14:64970361..64970389,-!p4@ZBTB25!0.24!2.37!ZBTB25;;chr19:2841497..2841523,+!p2@ZNF555!0.24!2.13!ZNF555;;
 
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.00!99.92!PLEK;;chr5:133451294..133451310,+!p2@TCF7!1.95!87.61!TCF7;;chr17:45810594..45810608,+!p1@TBX21!1.82!65.59!TBX21;;chr3:27763807..27763822,-!p1@EOMES!1.82!65.11!EOMES;;chr2:192015701..192015743,-!p1@STAT4!1.81!85.95!STAT4;;chr3:63953435..63953499,+!p1@ATXN7!1.80!62.04!ATXN7;;chr9:117150254..117150271,-!p1@AKNA!1.72!136.86!AKNA;;chr4:109087445..109087463,-!p1@LEF1!1.72!51.62!LEF1;;chr7:50343634..50343717,+!p2@IKZF1!1.71!50.67!IKZF1;;chr1:25256756..25256774,-!p1@RUNX3!1.68!86.19!RUNX3;;chr2:231090433..231090469,+!p1@SP140!1.68!46.65!SP140;;chr2:192015750..192015793,-!p2@STAT4!1.67!61.33!STAT4;;chr5:133450365..133450444,+!p1@TCF7!1.66!194.39!TCF7;;chr2:68592394..68592405,+!p2@PLEK!1.61!39.54!PLEK;;chr17:37934365..37934387,-!p2@IKZF3!1.61!39.31!IKZF3;;chr11:47400078..47400106,-!p1@SPI1!1.55!34.57!SPI1;;chr14:75988771..75988826,+!p1@BATF!1.53!43.80!BATF;;chr19:16435625..16435682,+!p1@KLF2!1.51!950.90!KLF2;;chr7:50344251..50344288,+!p3@IKZF1!1.47!28.41!IKZF1;;chr20:50159198..50159299,-!p1@NFATC2!1.46!40.02!NFATC2;;chr1:26697243..26697258,-!p1@ZNF683!1.46!27.70!ZNF683;;chr5:133451347..133451358,+!p3@TCF7!1.45!27.23!TCF7;;chr6:106546808..106546833,+!p3@PRDM1!1.36!27.47!PRDM1;;chr19:19779619..19779670,+!p1@ZNF101!1.34!57.77!ZNF101;;chr4:109090075..109090095,-!p2@LEF1!1.34!20.84!LEF1;;chr20:56195474..56195506,-!p1@ZBP1!1.33!20.36!ZBP1;;chr4:57522166..57522260,-!p2@HOPX!1.31!22.49!HOPX;;chr3:18486354..18486377,-!p2@SATB1!1.30!23.68!SATB1;;chr2:231090471..231090504,+!p2@SP140!1.29!18.71!SP140;;chr7:50343895..50343936,+!p5@IKZF1!1.29!18.71!IKZF1;;chr15:60884706..60884743,-!p1@RORA!1.27!89.50!RORA;;chr3:71355163..71355209,-!p5@FOXP1!1.27!24.62!FOXP1;;chr7:50344289..50344323,+!p1@IKZF1!1.27!17.52!IKZF1;;chr13:74707894..74707947,-!p6@KLF12!1.26!19.18!KLF12;;chr17:37934204..37934241,-!p3@IKZF3!1.26!17.28!IKZF3;;chr13:41593425..41593480,-!p1@ELF1!1.25!105.84!ELF1;;chr10:8096772..8096787,+!p2@GATA3!1.25!19.65!GATA3;;chr3:71542615..71542644,-!p12@FOXP1!1.25!16.81!FOXP1;;chr6:391743..391759,+!p1@IRF4!1.24!16.34!IRF4;;chr10:8096631..8096660,+!p1@GATA3!1.23!19.42!GATA3;;chr4:57522598..57522664,-!p3@HOPX!1.23!16.10!HOPX;;chr3:71542684..71542720,-!p18@FOXP1!1.20!14.68!FOXP1;;chr17:38020392..38020477,-!p1@IKZF3!1.20!14.68!IKZF3;;chr8:67525443..67525459,-!p2@MYBL1!1.18!21.31!MYBL1;;chr17:37934280..37934299,-!p6@IKZF3!1.18!13.97!IKZF3;;chr11:128392273..128392308,-!p2@ETS1!1.16!57.06!ETS1;;chr11:128392085..128392232,-!p1@ETS1!1.14!427.62!ETS1;;chr11:128563948..128564003,+!p1@FLI1!1.12!146.57!FLI1;;chr17:38020557..38020572,-!p4@IKZF3!1.12!12.08!IKZF3;;chr21:36421535..36421610,-!p2@RUNX1!1.10!41.91!RUNX1;;chr14:64970670..64970712,-!p3@ZBTB25!1.08!24.15!ZBTB25;;chr4:109089901..109089930,-!p3@LEF1!1.08!11.13!LEF1;;chr17:38020516..38020544,-!p5@IKZF3!1.08!10.89!IKZF3;;chr8:60031619..60031676,-!p1@TOX!1.07!23.20!TOX;;chr6:106546731..106546755,+!p5@PRDM1!1.07!10.65!PRDM1;;chr21:36421347..36421380,-!p8@RUNX1!1.07!10.65!RUNX1;;chr6:91006518..91006570,-!p1@BACH2!1.06!24.39!BACH2;;chr1:92951607..92951661,-!p1@GFI1!1.06!10.42!GFI1;;chr4:57522674..57522699,-!p5@HOPX!1.06!10.42!HOPX;;chr2:97202991..97203043,+!p3@ARID5A!1.05!10.18!ARID5A;;chr3:71542651..71542683,-!p22@FOXP1!1.05!10.18!FOXP1;;chr14:75988831..75988847,+!p2@BATF!1.03!9.71!BATF;;chr19:38085768..38085821,+!p1@ZNF540!1.02!14.21!ZNF540;;chrX:106960285..106960299,-!p1@TSC22D3!1.01!254.06!TSC22D3;;chr16:89789271..89789291,+!p5@ZNF276!1.01!9.23!ZNF276;;chr12:54778471..54778528,-!p1@ZNF385A!1.01!9.23!ZNF385A;;chr14:69262947..69262986,-!p3@ZFP36L1!1.00!10.89!ZFP36L1;;chr11:47400062..47400077,-!p2@SPI1!1.00!9.00!SPI1;;chr17:38020481..38020506,-!p7@IKZF3!0.99!8.76!IKZF3;;chr3:18480217..18480239,-!p3@SATB1!0.98!8.52!SATB1;;chr4:109088940..109089037,-!p4@LEF1!0.97!8.29!LEF1;;chr3:71179699..71179744,-!p2@FOXP1!0.96!62.04!FOXP1;;chr19:53289995..53290050,-!p1@ZNF600!0.96!34.10!ZNF600;;chr9:3525727..3525828,-!p2@RFX3!0.96!21.07!RFX3;;chr2:178128250..178128293,-!p6@NFE2L2!0.96!20.84!NFE2L2;;chr8:67525473..67525518,-!p1@MYBL1!0.96!19.18!MYBL1;;chr4:109089573..109089585,-!p8@LEF1!0.96!8.05!LEF1;;chr16:88752889..88752921,-!p1@SNAI3!0.95!9.23!SNAI3;;chr16:79634624..79634642,-!p1@MAF!0.93!30.78!MAF;;chr7:137620650..137620677,-!p3@CREB3L2!0.93!7.58!CREB3L2;;chr7:50343864..50343888,+!p7@IKZF1!0.93!7.58!IKZF1;;chr8:72756023..72756055,-!p6@MSC!0.92!9.23!MSC;;chr4:109088089..109088101,-!p11@LEF1!0.92!7.34!LEF1;;chr2:231090344..231090361,-!p3@SP110!0.91!7.10!SP110;;chr3:18487057..18487105,-!p4@SATB1!0.91!7.10!SATB1;;chrX:49121165..49121179,-!p1@FOXP3!0.91!7.10!FOXP3;;chr20:56195525..56195556,-!p2@ZBP1!0.91!7.10!ZBP1;;chr12:54694758..54694805,-!p1@NFE2!0.90!8.52!NFE2;;chr7:50348268..50348366,+!p4@IKZF1!0.90!6.87!IKZF1;;chr19:20748574..20748599,-!p1@ZNF737!0.89!43.09!ZNF737;;chr4:185395633..185395651,-!p2@IRF2!0.89!11.13!IRF2;;chr4:81104895..81104920,+!p2@PRDM8!0.88!10.18!PRDM8;;chr16:85932760..85932775,+!p1@IRF8!0.88!6.63!IRF8;;chr7:50344144..50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22220,+!p2@ARID1A!0.26!11.60!ARID1A;;chr19:57999101..57999158,+!p1@ZNF419!0.26!10.65!ZNF419;;chr8:146228270..146228295,-!p1@ZNF252!0.26!8.52!ZNF252P;;chr17:42298615..42298692,-!p2@UBTF!0.26!7.81!UBTF;;chr19:58400372..58400411,-!p1@ZNF814!0.26!7.81!ZNF814;;chr19:59084647..59084721,-!p1@MZF1!0.26!7.34!MZF1;;chr1:205601000..205601055,-!p2@ELK4!0.26!6.16!ELK4;;chrX:47863348..47863412,-!p1@ZNF182!0.26!5.92!ZNF182;;chr19:44556158..44556206,+!p1@ZNF223!0.26!5.68!ZNF223;;chr19:44439420..44439447,-!p1@ZNF45!0.26!5.45!ZNF45;;chr3:150126136..150126158,+!p4@TSC22D2!0.26!5.21!TSC22D2;;chr4:103422471..103422495,+!p2@NFKB1!0.26!3.79!NFKB1;;chr19:8942962..8942987,-!p1@ZNF558!0.26!3.79!ZNF558;;chr19:36705547..36705597,-!p1@ZNF565!0.26!3.55!ZNF565;;chr3:107241882..107241904,+!p2@BBX!0.26!3.31!BBX;;chr9:32550839..32550962,-!p3@TOPORS!0.26!3.31!TOPORS;;chr14:74253834..74253862,-!p5@C14orf43!0.26!3.31!C14orf43;;chr15:56535946..56535987,-!p1@RFX7!0.26!3.08!RFX7;;chr6:42419514..42419606,-!p1@TRERF1!0.26!2.84!TRERF1;;chrX:101975643..101975683,+!p1@BHLHB9!0.26!2.84!BHLHB9;;chr9:73028387..73028418,-!p4@KLF9!0.26!2.60!KLF9;;chr7:21467802..21467840,+!p3@SP4!0.26!2.60!SP4;;chr1:37940102..37940131,+!p2@ZC3H12A!0.26!2.60!ZC3H12A;;chr20:25677399..25677433,-!p3@ZNF337!0.26!2.37!ZNF337;;chr2:208030886..208030917,-!p4@KLF7!0.26!2.37!KLF7;;chr17:42297282..42297300,-!p9@UBTF!0.26!2.13!UBTF;;chr6:27356745..27356777,+!p1@ZNF391!0.26!1.89!ZNF391;;chr18:51751066..51751077,-!p6@MBD2!0.26!1.66!MBD2;;chr15:100106126..100106135,+!p6@MEF2A!0.26!1.42!MEF2A;;chr17:38465441..38465481,+!p6@RARA!0.26!1.18!RARA;;chr5:150284461..150284481,-!p4@ZNF300!0.26!1.18!ZNF300;;chr2:37458692..37458745,-!p1@CEBPZ!0.25!59.90!CEBPZ;;chr7:127032741..127032777,-!p1@ZNF800!0.25!55.41!ZNF800;;chr16:3930681..3930721,-!p1@CREBBP!0.25!27.94!CREBBP;;chr3:169491171..169491205,+!p1@MYNN!0.25!27.47!MYNN;;chr1:91487553..91487612,-!p1@ZNF644!0.25!26.99!ZNF644;;chr9:125675576..125675612,-!p1@ZBTB6!0.25!19.89!ZBTB6;;chr7:64254793..64254813,+!p1@ZNF138!0.25!18.00!ZNF138;;chr4:7045042..7045145,+!p1@TADA2B!0.25!11.37!TADA2B;;chr1:157108130..157108173,-!p1@ETV3!0.25!10.89!ETV3;;chr9:95640300..95640345,-!p1@ZNF484!0.25!8.29!ZNF484;;chr19:53360870..53360873,-!p1@ZNF468!0.25!5.21!ZNF468;;chr19:19496577..19496619,+!p5@GATAD2A!0.25!4.74!GATAD2A;;chr19:36909484..36909525,-!p2@ZFP82!0.25!2.37!ZFP82;;chr16:30621615..30621660,-!p2@ZNF689!0.25!2.13!ZNF689;;chr18:3449695..3449712,+!p9@TGIF1!0.25!1.66!TGIF1;;chr1:78149224..78149235,-!p3@ZZZ3!0.25!1.42!ZZZ3;;chr15:77197781..77197801,-!p3@SCAPER!0.25!0.95!SCAPER;;chr6:44355478..44355489,+!p5@CDC5L!0.25!0.95!CDC5L;;chr5:150080543..150080664,-!p1@RBM22!0.24!67.72!RBM22;;chr2:113012592..113012671,-!p1@ZC3H8!0.24!26.52!ZC3H8;;chr16:67876180..67876242,+!p1@THAP11!0.24!25.81!THAP11;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.24!14.44!ZNF595;;chr7:64023441..64023462,-!p1@ZNF680!0.24!11.84!ZNF680;;chr1:6640046..6640101,+!p1@ZBTB48!0.24!11.60!ZBTB48;;chr19:44716678..44716732,+!p1@ZNF227!0.24!10.18!ZNF227;;chr19:12175535..12175554,+!p1@ZNF844!0.24!7.81!ZNF844;;chr3:113415441..113415500,-!p1@KIAA2018!0.24!7.81!KIAA2018;;chr4:140005341..140005411,-!p3@ELF2!0.24!7.81!ELF2;;chr19:9434841..9434886,+!p1@ZNF559!0.24!7.34!ZNF559;;chr6:20403916..20403965,+!p3@E2F3!0.24!6.39!E2F3;;chr19:33793430..33793447,-!p1@CEBPA!0.24!5.92!CEBPA;;chr17:42297028..42297056,-!p3@UBTF!0.24!5.68!UBTF;;chr3:101395936..101395962,-!p2@ZBTB11!0.24!5.45!ZBTB11;;chr1:117602932..117602973,+!p1@TTF2!0.24!5.21!TTF2;;chr1:40997285..40997352,+!p1@ZNF684!0.24!4.74!ZNF684;;chr19:57751980..57752019,+!p2@ZNF805!0.24!4.50!ZNF805;;chr19:37096194..37096235,+!p1@ZNF382!0.24!4.26!ZNF382;;chr14:35872453..35872485,-!p2@NFKBIA!0.24!3.08!NFKBIA;;chr12:19671171..19671175,+!p4@AEBP2!0.24!2.84!AEBP2;;chr1:249153232..249153251,-!p2@ZNF692!0.24!2.84!ZNF692;;chr1:28995231..28995250,+!p2@GMEB1!0.24!2.37!GMEB1;;chr14:64970361..64970389,-!p4@ZBTB25!0.24!2.37!ZBTB25;;chr19:2841497..2841523,+!p2@ZNF555!0.24!2.13!ZNF555;;
 +
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000625;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
 
|ffid_belonging_in_development=CL:0000134,CL:0000051,CL:0000790
 
|ffid_belonging_in_development=CL:0000134,CL:0000051,CL:0000790
 
|fonse_cell_line=
 
|fonse_cell_line=
Line 41: Line 42:
 
|fonse_treatment_closure=
 
|fonse_treatment_closure=
 
|has_quality=
 
|has_quality=
 +
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation2.CNhs12184.12206-129D1.hg19.nobarcode.bam
 +
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation2.CNhs12184.12206-129D1.hg19.ctss.bed.gz
 +
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation2.CNhs12184.12206-129D1.hg19.nobarcode.rdna.fa.gz
 +
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation2.CNhs12184.12206-129D1.hg38.nobarcode.bam
 +
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation2.CNhs12184.12206-129D1.hg38.nobarcode.ctss.bed.gz
 
|id=FF:12206-129D1
 
|id=FF:12206-129D1
 
|is_a=EFO:0002091;;FF:0000030;;FF:0000210
 
|is_a=EFO:0002091;;FF:0000030;;FF:0000210
 
|is_obsolete=
 
|is_obsolete=
|library_id=CNhs12184
+
|library_id=CNhs12184!RDhi10018
 
|library_id_phase_based=2:CNhs12184
 
|library_id_phase_based=2:CNhs12184
 +
|microRNAs=
 +
|microRNAs_nn=
 +
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12206
 +
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12206
 
|name=CD8+ T Cells (pluriselect), donor090612, donation2
 
|name=CD8+ T Cells (pluriselect), donor090612, donation2
 
|namespace=FANTOM5
 
|namespace=FANTOM5
Line 53: Line 63:
 
|profile_rnaseq=
 
|profile_rnaseq=
 
|profile_srnaseq=,,,
 
|profile_srnaseq=,,,
 +
|refex=http://refex.dbcls.jp/genelist.php?lang
 
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Line 90: Line 101:
 
|top_motifs=ELF1,2,4:2.55826061884;RUNX1..3:2.26464567158;ETS1,2:2.10270691616;CDX1,2,4:1.94502362637;T:1.90361827871;PAX3,7:1.87816910354;PDX1:1.87761538408;STAT1,3:1.77530684783;SPI1:1.75157093405;FOX{D1,D2}:1.56795480577;DMAP1_NCOR{1,2}_SMARC:1.51983332109;CRX:1.4899823675;IRF1,2:1.47702201281;RORA:1.43350591514;FOXO1,3,4:1.40476907334;SPIB:1.36263784748;TLX2:1.347131566;FOX{F1,F2,J1}:1.22241804004;ELK1,4_GABP{A,B1}:1.16182108422;BPTF:1.08089551585;IKZF2:1.06091179035;NANOG{mouse}:1.03950238621;HMX1:1.03716589971;IRF7:0.985349758836;TGIF1:0.932837210364;GATA6:0.861120791253;YY1:0.857341078999;NKX2-2,8:0.85678978669;FOXA2:0.822690642711;LEF1_TCF7_TCF7L1,2:0.791991946722;PBX1:0.77387482341;MYOD1:0.715271501233;NKX6-1,2:0.677743818845;BREu{core}:0.604765434258;FOX{I1,J2}:0.602479864412;PAX6:0.587289308784;EP300:0.561830375372;CREB1:0.508823303222;ZBTB16:0.461556521934;ZEB1:0.377064338737;CUX2:0.376603344572;FOXP3:0.376459485703;SPZ1:0.373393468602;RFX2..5_RFXANK_RFXAP:0.340536906643;PAX4:0.331260567313;ATF5_CREB3:0.32415977578;FOXN1:0.321163913731;SOX5:0.319900257813;SNAI1..3:0.287912415017;ALX1:0.279858090325;FOXD3:0.271951029831;POU1F1:0.263261029273;NFIX:0.260229832728;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.227766779336;FOXP1:0.216209634371;NRF1:0.215763896448;NFATC1..3:0.197535882804;PAX2:0.1934579055;SREBF1,2:0.179934816343;NKX2-1,4:0.163772752377;NFKB1_REL_RELA:0.161321294342;STAT5{A,B}:0.145491712212;RBPJ:0.142048121505;STAT2,4,6:0.0889218372336;POU2F1..3:0.0741276468769;NFIL3:0.0700990975287;ZNF143:0.0620802553001;NR1H4:0.0538828094238;ZNF148:0.0511615013658;SOX2:0.048504584935;ATF2:0.048091175455;LMO2:0.0235378398979;TAL1_TCF{3,4,12}:-0.0134149591876;HOX{A6,A7,B6,B7}:-0.0144979086812;AR:-0.026899952346;VSX1,2:-0.0279952907792;MYB:-0.0447288502894;HES1:-0.0591304348062;OCT4_SOX2{dimer}:-0.068625542096;PRRX1,2:-0.0752701071837;ADNP_IRX_SIX_ZHX:-0.0775372672133;CEBPA,B_DDIT3:-0.080387334501;NKX3-1:-0.0978398526816;TBX4,5:-0.115044341239;POU5F1:-0.141184718535;NR5A1,2:-0.144873686284;TFAP4:-0.175521893935;RXRA_VDR{dimer}:-0.185563724498;HLF:-0.205756859576;FOXQ1:-0.216086434907;FOXM1:-0.225617366133;MYFfamily:-0.256284314674;DBP:-0.267424589696;GCM1,2:-0.279128713338;NANOG:-0.288376783142;NFY{A,B,C}:-0.291560399361;HMGA1,2:-0.293912807178;JUN:-0.299779315437;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.300317199331;ESR1:-0.303519136229;AHR_ARNT_ARNT2:-0.314017972137;TFCP2:-0.314558993295;HAND1,2:-0.329702657799;NFE2L1:-0.329891097296;RREB1:-0.331445697444;ARID5B:-0.333604145007;HNF4A_NR2F1,2:-0.341602943696;GLI1..3:-0.342742780006;HNF1A:-0.357465197427;HBP1_HMGB_SSRP1_UBTF:-0.360951276991;E2F1..5:-0.369602893528;NFE2L2:-0.370771901515;FOSL2:-0.374883096795;ZNF423:-0.378302931628;MTF1:-0.378560959914;AIRE:-0.384093889024;MZF1:-0.411017838872;MAFB:-0.4131555707;ALX4:-0.454792677045;NR3C1:-0.456391056151;ATF4:-0.483115398937;BACH2:-0.49325533529;EVI1:-0.555404804965;RFX1:-0.56247810974;NHLH1,2:-0.568703852065;GFI1:-0.568908600611;FOS_FOS{B,L1}_JUN{B,D}:-0.570343986341;HIF1A:-0.580830212625;GATA4:-0.60791932758;ZNF238:-0.616715619728;ATF6:-0.62850807687;ZNF384:-0.631065369965;NFE2:-0.638649872159;EGR1..3:-0.639548505565;REST:-0.650870277546;PPARG:-0.684798286146;PITX1..3:-0.689268932533;SMAD1..7,9:-0.692312001192;SRF:-0.7030331634;ZFP161:-0.728025239417;NKX2-3_NKX2-5:-0.758970840136;MAZ:-0.784039329168;PAX5:-0.798751774375;PRDM1:-0.809827077334;PATZ1:-0.816681873104;MEF2{A,B,C,D}:-0.82927171212;NR6A1:-0.870680654736;MTE{core}:-0.909464268014;MED-1{core}:-0.92416420281;TP53:-0.924246395831;TOPORS:-0.925058024104;ZBTB6:-0.945941016768;LHX3,4:-0.956925452689;KLF4:-0.97522764519;ONECUT1,2:-0.989001120972;GFI1B:-1.02676648181;HOX{A4,D4}:-1.06583372498;HOXA9_MEIS1:-1.09443544881;SOX{8,9,10}:-1.09626317751;bHLH_family:-1.09815136043;HSF1,2:-1.10114853017;GTF2I:-1.1051520855;NKX3-2:-1.12129193222;XCPE1{core}:-1.12609161097;MYBL2:-1.13510884193;GZF1:-1.14076605003;EN1,2:-1.14858968372;PAX8:-1.20013322302;CDC5L:-1.28656829148;UFEwm:-1.29731383455;TFAP2B:-1.29747114296;RXR{A,B,G}:-1.31543376898;XBP1:-1.31923682028;TEF:-1.32153523746;SP1:-1.3307239453;SOX17:-1.37103924305;HIC1:-1.37705496067;TLX1..3_NFIC{dimer}:-1.39330765311;EBF1:-1.42645980608;TBP:-1.43648850792;GTF2A1,2:-1.488345612;TFDP1:-1.51769587458;POU6F1:-1.51874835923;HOX{A5,B5}:-1.55949696024;FOXL1:-1.5605468553;TFAP2{A,C}:-1.61417841238;ZIC1..3:-1.6510933289;ESRRA:-1.6852737764;TEAD1:-1.73562000057;POU3F1..4:-1.83507449209;IKZF1:-2.2867958352;PAX1,9:-2.29433812416
 
|top_motifs=ELF1,2,4:2.55826061884;RUNX1..3:2.26464567158;ETS1,2:2.10270691616;CDX1,2,4:1.94502362637;T:1.90361827871;PAX3,7:1.87816910354;PDX1:1.87761538408;STAT1,3:1.77530684783;SPI1:1.75157093405;FOX{D1,D2}:1.56795480577;DMAP1_NCOR{1,2}_SMARC:1.51983332109;CRX:1.4899823675;IRF1,2:1.47702201281;RORA:1.43350591514;FOXO1,3,4:1.40476907334;SPIB:1.36263784748;TLX2:1.347131566;FOX{F1,F2,J1}:1.22241804004;ELK1,4_GABP{A,B1}:1.16182108422;BPTF:1.08089551585;IKZF2:1.06091179035;NANOG{mouse}:1.03950238621;HMX1:1.03716589971;IRF7:0.985349758836;TGIF1:0.932837210364;GATA6:0.861120791253;YY1:0.857341078999;NKX2-2,8:0.85678978669;FOXA2:0.822690642711;LEF1_TCF7_TCF7L1,2:0.791991946722;PBX1:0.77387482341;MYOD1:0.715271501233;NKX6-1,2:0.677743818845;BREu{core}:0.604765434258;FOX{I1,J2}:0.602479864412;PAX6:0.587289308784;EP300:0.561830375372;CREB1:0.508823303222;ZBTB16:0.461556521934;ZEB1:0.377064338737;CUX2:0.376603344572;FOXP3:0.376459485703;SPZ1:0.373393468602;RFX2..5_RFXANK_RFXAP:0.340536906643;PAX4:0.331260567313;ATF5_CREB3:0.32415977578;FOXN1:0.321163913731;SOX5:0.319900257813;SNAI1..3:0.287912415017;ALX1:0.279858090325;FOXD3:0.271951029831;POU1F1:0.263261029273;NFIX:0.260229832728;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.227766779336;FOXP1:0.216209634371;NRF1:0.215763896448;NFATC1..3:0.197535882804;PAX2:0.1934579055;SREBF1,2:0.179934816343;NKX2-1,4:0.163772752377;NFKB1_REL_RELA:0.161321294342;STAT5{A,B}:0.145491712212;RBPJ:0.142048121505;STAT2,4,6:0.0889218372336;POU2F1..3:0.0741276468769;NFIL3:0.0700990975287;ZNF143:0.0620802553001;NR1H4:0.0538828094238;ZNF148:0.0511615013658;SOX2:0.048504584935;ATF2:0.048091175455;LMO2:0.0235378398979;TAL1_TCF{3,4,12}:-0.0134149591876;HOX{A6,A7,B6,B7}:-0.0144979086812;AR:-0.026899952346;VSX1,2:-0.0279952907792;MYB:-0.0447288502894;HES1:-0.0591304348062;OCT4_SOX2{dimer}:-0.068625542096;PRRX1,2:-0.0752701071837;ADNP_IRX_SIX_ZHX:-0.0775372672133;CEBPA,B_DDIT3:-0.080387334501;NKX3-1:-0.0978398526816;TBX4,5:-0.115044341239;POU5F1:-0.141184718535;NR5A1,2:-0.144873686284;TFAP4:-0.175521893935;RXRA_VDR{dimer}:-0.185563724498;HLF:-0.205756859576;FOXQ1:-0.216086434907;FOXM1:-0.225617366133;MYFfamily:-0.256284314674;DBP:-0.267424589696;GCM1,2:-0.279128713338;NANOG:-0.288376783142;NFY{A,B,C}:-0.291560399361;HMGA1,2:-0.293912807178;JUN:-0.299779315437;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.300317199331;ESR1:-0.303519136229;AHR_ARNT_ARNT2:-0.314017972137;TFCP2:-0.314558993295;HAND1,2:-0.329702657799;NFE2L1:-0.329891097296;RREB1:-0.331445697444;ARID5B:-0.333604145007;HNF4A_NR2F1,2:-0.341602943696;GLI1..3:-0.342742780006;HNF1A:-0.357465197427;HBP1_HMGB_SSRP1_UBTF:-0.360951276991;E2F1..5:-0.369602893528;NFE2L2:-0.370771901515;FOSL2:-0.374883096795;ZNF423:-0.378302931628;MTF1:-0.378560959914;AIRE:-0.384093889024;MZF1:-0.411017838872;MAFB:-0.4131555707;ALX4:-0.454792677045;NR3C1:-0.456391056151;ATF4:-0.483115398937;BACH2:-0.49325533529;EVI1:-0.555404804965;RFX1:-0.56247810974;NHLH1,2:-0.568703852065;GFI1:-0.568908600611;FOS_FOS{B,L1}_JUN{B,D}:-0.570343986341;HIF1A:-0.580830212625;GATA4:-0.60791932758;ZNF238:-0.616715619728;ATF6:-0.62850807687;ZNF384:-0.631065369965;NFE2:-0.638649872159;EGR1..3:-0.639548505565;REST:-0.650870277546;PPARG:-0.684798286146;PITX1..3:-0.689268932533;SMAD1..7,9:-0.692312001192;SRF:-0.7030331634;ZFP161:-0.728025239417;NKX2-3_NKX2-5:-0.758970840136;MAZ:-0.784039329168;PAX5:-0.798751774375;PRDM1:-0.809827077334;PATZ1:-0.816681873104;MEF2{A,B,C,D}:-0.82927171212;NR6A1:-0.870680654736;MTE{core}:-0.909464268014;MED-1{core}:-0.92416420281;TP53:-0.924246395831;TOPORS:-0.925058024104;ZBTB6:-0.945941016768;LHX3,4:-0.956925452689;KLF4:-0.97522764519;ONECUT1,2:-0.989001120972;GFI1B:-1.02676648181;HOX{A4,D4}:-1.06583372498;HOXA9_MEIS1:-1.09443544881;SOX{8,9,10}:-1.09626317751;bHLH_family:-1.09815136043;HSF1,2:-1.10114853017;GTF2I:-1.1051520855;NKX3-2:-1.12129193222;XCPE1{core}:-1.12609161097;MYBL2:-1.13510884193;GZF1:-1.14076605003;EN1,2:-1.14858968372;PAX8:-1.20013322302;CDC5L:-1.28656829148;UFEwm:-1.29731383455;TFAP2B:-1.29747114296;RXR{A,B,G}:-1.31543376898;XBP1:-1.31923682028;TEF:-1.32153523746;SP1:-1.3307239453;SOX17:-1.37103924305;HIC1:-1.37705496067;TLX1..3_NFIC{dimer}:-1.39330765311;EBF1:-1.42645980608;TBP:-1.43648850792;GTF2A1,2:-1.488345612;TFDP1:-1.51769587458;POU6F1:-1.51874835923;HOX{A5,B5}:-1.55949696024;FOXL1:-1.5605468553;TFAP2{A,C}:-1.61417841238;ZIC1..3:-1.6510933289;ESRRA:-1.6852737764;TEAD1:-1.73562000057;POU3F1..4:-1.83507449209;IKZF1:-2.2867958352;PAX1,9:-2.29433812416
 
|xref=
 
|xref=
 +
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12206-129D1;search_select_hide=table117:FF:12206-129D1
 
}}
 
}}

Latest revision as of 09:34, 4 June 2020

Name:CD8+ T Cells (pluriselect), donor090612, donation2
Species:Human (Homo sapiens)
Library ID:CNhs12184,RDhi10018
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexNA
ageNA
cell typeT cell, CD8+
cell lineNA
companyNA
collaborationMatched_genome_OSC(contact:Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
RNA-Seq  SAMD00013694
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12184 CAGE DRX008070 DRR008942
RDhi10018 RNA-Seq DRX012351 DRR013799
Accession ID Hg19

Library idBAMCTSS
CNhs12184 DRZ000367 DRZ001752
RDhi10018 DRZ003000
Accession ID Hg38

Library idBAMCTSS
CNhs12184 DRZ011717 DRZ013102
RDhi10018
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0.168
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
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C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0.0923
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.84
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs12184

Jaspar motif P-value
MA0002.2 2.89832e-10
MA0003.1 0.482
MA0004.1 0.944
MA0006.1 0.508
MA0007.1 0.954
MA0009.1 0.202
MA0014.1 0.98
MA0017.1 0.0292
MA0018.2 0.431
MA0019.1 0.992
MA0024.1 0.219
MA0025.1 0.71
MA0027.1 0.929
MA0028.1 1.18661e-4
MA0029.1 0.697
MA0030.1 0.138
MA0031.1 0.00834
MA0035.2 0.212
MA0038.1 0.0976
MA0039.2 0.898
MA0040.1 0.884
MA0041.1 0.861
MA0042.1 0.559
MA0043.1 0.325
MA0046.1 0.795
MA0047.2 0.175
MA0048.1 0.28
MA0050.1 4.61348e-9
MA0051.1 6.31316e-5
MA0052.1 0.00109
MA0055.1 0.394
MA0057.1 0.685
MA0058.1 0.81
MA0059.1 0.547
MA0060.1 0.0437
MA0061.1 0.00469
MA0062.2 4.28177e-18
MA0065.2 0.0386
MA0066.1 0.157
MA0067.1 0.643
MA0068.1 0.424
MA0069.1 0.747
MA0070.1 0.411
MA0071.1 0.696
MA0072.1 0.439
MA0073.1 0.797
MA0074.1 0.642
MA0076.1 1.18089e-7
MA0077.1 0.0862
MA0078.1 0.751
MA0079.2 0.563
MA0080.2 2.80608e-15
MA0081.1 0.00427
MA0083.1 0.0353
MA0084.1 0.449
MA0087.1 0.652
MA0088.1 0.0603
MA0090.1 2.86221e-4
MA0091.1 0.844
MA0092.1 0.921
MA0093.1 0.975
MA0099.2 0.0394
MA0100.1 0.512
MA0101.1 0.675
MA0102.2 0.286
MA0103.1 0.148
MA0104.2 0.277
MA0105.1 1.08006e-5
MA0106.1 0.355
MA0107.1 0.844
MA0108.2 1.57164e-10
MA0111.1 0.207
MA0112.2 0.0863
MA0113.1 0.706
MA0114.1 0.271
MA0115.1 0.774
MA0116.1 1.02917e-5
MA0117.1 0.725
MA0119.1 0.715
MA0122.1 0.23
MA0124.1 0.491
MA0125.1 0.308
MA0131.1 0.603
MA0135.1 0.829
MA0136.1 1.19946e-27
MA0137.2 0.0105
MA0138.2 0.995
MA0139.1 0.0103
MA0140.1 0.213
MA0141.1 0.984
MA0142.1 0.568
MA0143.1 0.377
MA0144.1 0.0949
MA0145.1 0.943
MA0146.1 0.3
MA0147.1 0.31
MA0148.1 0.404
MA0149.1 0.234
MA0150.1 0.653
MA0152.1 0.037
MA0153.1 0.261
MA0154.1 0.00443
MA0155.1 0.769
MA0156.1 1.58714e-27
MA0157.1 0.00938
MA0159.1 0.0574
MA0160.1 0.401
MA0162.1 0.906
MA0163.1 3.775e-10
MA0164.1 0.39
MA0258.1 0.121
MA0259.1 0.689



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs12184

Novel motif P-value
1 0.189
10 0.0185
100 0.792
101 0.277
102 0.525
103 0.151
104 0.533
105 0.0874
106 0.511
107 0.243
108 0.645
109 0.0616
11 0.0778
110 0.44
111 0.358
112 0.449
113 0.143
114 0.206
115 0.307
116 0.929
117 0.00656
118 0.307
119 0.71
12 0.654
120 0.494
121 0.913
122 0.432
123 0.041
124 0.0963
125 0.699
126 0.262
127 0.294
128 0.635
129 0.359
13 0.65
130 0.751
131 0.784
132 0.838
133 0.753
134 0.753
135 0.249
136 0.934
137 0.0445
138 0.204
139 0.0171
14 0.256
140 0.0921
141 0.636
142 0.557
143 1.37755e-5
144 0.744
145 0.383
146 0.226
147 0.0179
148 0.114
149 0.883
15 0.0825
150 0.74
151 0.28
152 0.54
153 0.8
154 0.949
155 0.0239
156 0.479
157 0.352
158 0.283
159 0.0878
16 0.728
160 0.581
161 0.298
162 0.282
163 0.816
164 0.417
165 0.252
166 0.663
167 0.55
168 0.0991
169 0.445
17 0.742
18 0.603
19 0.656
2 0.538
20 0.738
21 0.309
22 0.781
23 0.947
24 0.407
25 0.0544
26 0.56
27 0.0397
28 0.395
29 0.125
3 0.0294
30 0.586
31 0.648
32 0.133
33 0.483
34 0.659
35 0.0722
36 0.0514
37 0.21
38 0.549
39 0.562
4 0.797
40 0.539
41 0.15
42 0.0515
43 0.226
44 0.535
45 0.958
46 0.125
47 0.0822
48 0.128
49 0.142
5 0.186
50 0.614
51 0.512
52 0.467
53 0.143
54 0.447
55 0.22
56 0.494
57 0.625
58 0.0327
59 0.259
6 0.96
60 0.245
61 0.131
62 0.0165
63 0.649
64 0.192
65 0.613
66 0.99
67 0.928
68 0.518
69 0.92
7 0.194
70 0.0172
71 0.106
72 0.0747
73 0.605
74 0.334
75 0.0356
76 0.295
77 0.698
78 0.161
79 0.408
8 0.878
80 0.00167
81 0.309
82 0.0942
83 0.984
84 0.395
85 0.733
86 0.156
87 0.607
88 0.775
89 0.876
9 0.358
90 0.0107
91 0.895
92 0.29
93 0.223
94 0.0625
95 0.0229
96 0.128
97 0.442
98 0.236
99 0.138



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs12184


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000625 (CD8-positive, alpha-beta T cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000030 (CD8-positive T cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)