FF:12224-129F1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005606 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008047;DRR008919;DRZ000344;DRZ001729;DRZ011694;DRZ013079 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000034,CL:0000037,CL:0002092,CL:0001024 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000027,FF:0000021,FF:0000001,FF:0000020 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD133%252b%2520stem%2520cells%2520-%2520adult%2520bone%2520marrow%2520derived%252c%2520pool1.CNhs12552.12224-129F1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD133%252b%2520stem%2520cells%2520-%2520adult%2520bone%2520marrow%2520derived%252c%2520pool1.CNhs12552.12224-129F1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD133%252b%2520stem%2520cells%2520-%2520adult%2520bone%2520marrow%2520derived%252c%2520pool1.CNhs12552.12224-129F1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD133%252b%2520stem%2520cells%2520-%2520adult%2520bone%2520marrow%2520derived%252c%2520pool1.CNhs12552.12224-129F1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD133%252b%2520stem%2520cells%2520-%2520adult%2520bone%2520marrow%2520derived%252c%2520pool1.CNhs12552.12224-129F1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12224-129F1 | |id=FF:12224-129F1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000020 | ||
|is_obsolete= | |||
|library_id=CNhs12552 | |||
|library_id_phase_based=2:CNhs12552 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12224 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12224 | |||
|name=CD133+ stem cells - adult bone marrow derived, pool1 | |name=CD133+ stem cells - adult bone marrow derived, pool1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12552,LSID921,release012,COMPLETED | |profile_hcage=CNhs12552,LSID921,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=129 | |rna_box=129 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=1.40319 | |rna_weight_ug=1.40319 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=ABM026F | |sample_cell_catalog=ABM026F | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.85219399224787e-267!GO:0043227;membrane-bound organelle;2.11600514618856e-240!GO:0043231;intracellular membrane-bound organelle;5.04092111051659e-240!GO:0043226;organelle;1.75402257560159e-222!GO:0043229;intracellular organelle;8.36543689341176e-222!GO:0005737;cytoplasm;2.88644631688926e-158!GO:0044422;organelle part;6.84747533671225e-141!GO:0044446;intracellular organelle part;4.6249467154629e-139!GO:0005634;nucleus;1.70832236370021e-122!GO:0044237;cellular metabolic process;6.27840111595298e-120!GO:0044444;cytoplasmic part;2.39399956597471e-116!GO:0044238;primary metabolic process;1.42221372461776e-115!GO:0043170;macromolecule metabolic process;8.89909347081384e-113!GO:0032991;macromolecular complex;1.2516787948731e-107!GO:0030529;ribonucleoprotein complex;6.23897661230274e-99!GO:0003723;RNA binding;1.5867413405914e-87!GO:0044428;nuclear part;9.73867333671787e-87!GO:0043233;organelle lumen;2.87085613026146e-80!GO:0031974;membrane-enclosed lumen;2.87085613026146e-80!GO:0005739;mitochondrion;3.33672815667546e-77!GO:0043283;biopolymer metabolic process;4.60583714564538e-75!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.20412694542854e-73!GO:0010467;gene expression;1.82793578596594e-68!GO:0005840;ribosome;1.99161185888261e-58!GO:0006412;translation;1.18490021795998e-57!GO:0006396;RNA processing;1.45739687629719e-57!GO:0005515;protein binding;1.1905275418005e-52!GO:0043234;protein complex;1.26054591507407e-52!GO:0031981;nuclear lumen;5.7050139038156e-51!GO:0003735;structural constituent of ribosome;9.23920613051505e-51!GO:0003676;nucleic acid binding;1.80061532960392e-50!GO:0044429;mitochondrial part;2.50369842066373e-50!GO:0006259;DNA metabolic process;3.50309143599213e-49!GO:0019538;protein metabolic process;3.2531630475454e-48!GO:0016071;mRNA metabolic process;5.36539753274005e-46!GO:0044267;cellular protein metabolic process;2.79033371840388e-45!GO:0033279;ribosomal subunit;1.04050623383903e-44!GO:0044260;cellular macromolecule metabolic process;1.14329342544123e-44!GO:0009059;macromolecule biosynthetic process;7.57974940292425e-44!GO:0031967;organelle envelope;1.30135742088066e-43!GO:0031975;envelope;3.29918370108365e-43!GO:0008380;RNA splicing;1.89749641745388e-41!GO:0031090;organelle membrane;1.5776412026169e-40!GO:0044249;cellular biosynthetic process;2.06058668896272e-40!GO:0009058;biosynthetic process;2.80499749284916e-40!GO:0006397;mRNA processing;1.8709318424011e-39!GO:0033036;macromolecule localization;2.61769058535075e-38!GO:0005829;cytosol;2.81860147160977e-38!GO:0065003;macromolecular complex assembly;4.56942948130408e-37!GO:0015031;protein transport;7.32230933015717e-37!GO:0016070;RNA metabolic process;2.47086948454991e-36!GO:0045184;establishment of protein localization;7.5653429590069e-35!GO:0016043;cellular component organization and biogenesis;7.65499689560013e-35!GO:0008104;protein localization;1.71168648845374e-34!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.73896990009901e-34!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.15125274786011e-33!GO:0006996;organelle organization and biogenesis;8.0491574107186e-33!GO:0022607;cellular component assembly;2.13204721875241e-32!GO:0005681;spliceosome;1.13243819232707e-31!GO:0005654;nucleoplasm;1.32034280472974e-31!GO:0019866;organelle inner membrane;1.35604914550151e-31!GO:0005740;mitochondrial envelope;2.53328534083413e-31!GO:0031966;mitochondrial membrane;1.37246452011833e-29!GO:0044445;cytosolic part;1.67663761167817e-29!GO:0043228;non-membrane-bound organelle;8.42185774302912e-29!GO:0043232;intracellular non-membrane-bound organelle;8.42185774302912e-29!GO:0046907;intracellular transport;2.17517471683209e-28!GO:0005743;mitochondrial inner membrane;2.34599666573671e-28!GO:0005694;chromosome;1.06434392911614e-27!GO:0006886;intracellular protein transport;3.55581199160304e-26!GO:0044427;chromosomal part;1.67363228031053e-25!GO:0006974;response to DNA damage stimulus;1.82052426514686e-25!GO:0051276;chromosome organization and biogenesis;4.01182294393735e-25!GO:0007049;cell cycle;5.75160138901291e-25!GO:0000166;nucleotide binding;1.24953239194413e-24!GO:0015935;small ribosomal subunit;3.45529977326764e-24!GO:0044451;nucleoplasm part;4.22303608287794e-24!GO:0006119;oxidative phosphorylation;6.45024745709476e-23!GO:0044455;mitochondrial membrane part;2.05768616809229e-22!GO:0031980;mitochondrial lumen;2.46053419032714e-22!GO:0005759;mitochondrial matrix;2.46053419032714e-22!GO:0006281;DNA repair;6.02603856595853e-22!GO:0006325;establishment and/or maintenance of chromatin architecture;7.33511012965067e-22!GO:0015934;large ribosomal subunit;9.66917519986402e-22!GO:0006323;DNA packaging;4.80722790545661e-21!GO:0022618;protein-RNA complex assembly;6.54444435560095e-21!GO:0051649;establishment of cellular localization;6.86075034576735e-21!GO:0005730;nucleolus;1.58077773088069e-20!GO:0051641;cellular localization;2.3518042823214e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.0228407091968e-19!GO:0044265;cellular macromolecule catabolic process;2.2161941458719e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;2.69555128877992e-19!GO:0016462;pyrophosphatase activity;2.79796499647536e-19!GO:0022402;cell cycle process;3.16487579677753e-19!GO:0006457;protein folding;1.67279283130749e-18!GO:0017111;nucleoside-triphosphatase activity;2.04423062878839e-18!GO:0005746;mitochondrial respiratory chain;2.07005612492617e-18!GO:0019941;modification-dependent protein catabolic process;3.90803097568878e-18!GO:0043632;modification-dependent macromolecule catabolic process;3.90803097568878e-18!GO:0006511;ubiquitin-dependent protein catabolic process;4.94691808512878e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;5.04925062021496e-18!GO:0016874;ligase activity;6.83591477342499e-18!GO:0006260;DNA replication;6.8595562278299e-18!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.08385660049026e-17!GO:0006512;ubiquitin cycle;1.1000501022298e-17!GO:0044257;cellular protein catabolic process;1.55671014508676e-17!GO:0008134;transcription factor binding;1.60143516421153e-17!GO:0043285;biopolymer catabolic process;2.10721160761267e-17!GO:0000502;proteasome complex (sensu Eukaryota);9.28773726639733e-17!GO:0032553;ribonucleotide binding;2.1401985041038e-16!GO:0032555;purine ribonucleotide binding;2.1401985041038e-16!GO:0009719;response to endogenous stimulus;2.63654387325887e-16!GO:0005761;mitochondrial ribosome;2.98474524508487e-16!GO:0000313;organellar ribosome;2.98474524508487e-16!GO:0044248;cellular catabolic process;3.07916434796733e-16!GO:0050136;NADH dehydrogenase (quinone) activity;3.40112452779822e-16!GO:0003954;NADH dehydrogenase activity;3.40112452779822e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.40112452779822e-16!GO:0000785;chromatin;4.13548746738482e-16!GO:0065004;protein-DNA complex assembly;4.17147908327423e-16!GO:0006333;chromatin assembly or disassembly;5.52301437408699e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);9.69342144933743e-16!GO:0017076;purine nucleotide binding;1.60781505718456e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.79485791037142e-15!GO:0043412;biopolymer modification;2.21374937632262e-15!GO:0009057;macromolecule catabolic process;2.40516514888575e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;2.57666439786923e-15!GO:0000375;RNA splicing, via transesterification reactions;2.57666439786923e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.57666439786923e-15!GO:0008135;translation factor activity, nucleic acid binding;2.86451448112909e-15!GO:0042623;ATPase activity, coupled;2.89243553082123e-15!GO:0005524;ATP binding;2.96622549767618e-15!GO:0006605;protein targeting;4.05371044276804e-15!GO:0016604;nuclear body;4.39845419329041e-15!GO:0016887;ATPase activity;4.95768495034387e-15!GO:0032559;adenyl ribonucleotide binding;6.50442986336305e-15!GO:0000278;mitotic cell cycle;6.68001594961838e-15!GO:0048770;pigment granule;8.48777733181904e-15!GO:0042470;melanosome;8.48777733181904e-15!GO:0042775;organelle ATP synthesis coupled electron transport;1.48921400017835e-14!GO:0042773;ATP synthesis coupled electron transport;1.48921400017835e-14!GO:0042254;ribosome biogenesis and assembly;1.89329322203637e-14!GO:0006915;apoptosis;2.41464907043794e-14!GO:0012501;programmed cell death;3.01219513036975e-14!GO:0030964;NADH dehydrogenase complex (quinone);3.55361806859132e-14!GO:0045271;respiratory chain complex I;3.55361806859132e-14!GO:0005747;mitochondrial respiratory chain complex I;3.55361806859132e-14!GO:0030554;adenyl nucleotide binding;7.90061433418138e-14!GO:0044453;nuclear membrane part;8.00667853570867e-14!GO:0030163;protein catabolic process;9.24433125897284e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.19181215407261e-13!GO:0012505;endomembrane system;2.09207954283092e-13!GO:0006413;translational initiation;2.12192165547241e-13!GO:0031965;nuclear membrane;2.14163453708936e-13!GO:0006334;nucleosome assembly;3.21640728497229e-13!GO:0050794;regulation of cellular process;3.31029599877942e-13!GO:0022403;cell cycle phase;5.73855859906605e-13!GO:0003743;translation initiation factor activity;5.80732138670975e-13!GO:0008219;cell death;5.84560370369908e-13!GO:0016265;death;5.84560370369908e-13!GO:0019222;regulation of metabolic process;6.72530041796905e-13!GO:0004386;helicase activity;7.9435515624557e-13!GO:0006464;protein modification process;9.69885614663466e-13!GO:0005635;nuclear envelope;1.10714975538947e-12!GO:0051186;cofactor metabolic process;1.26001556571205e-12!GO:0031497;chromatin assembly;1.5648450855101e-12!GO:0051082;unfolded protein binding;1.8259491668314e-12!GO:0016568;chromatin modification;3.00617766278197e-12!GO:0006913;nucleocytoplasmic transport;4.50360625233051e-12!GO:0016607;nuclear speck;5.51968858477783e-12!GO:0006403;RNA localization;6.33772313547662e-12!GO:0050657;nucleic acid transport;7.19547795118297e-12!GO:0051236;establishment of RNA localization;7.19547795118297e-12!GO:0050658;RNA transport;7.19547795118297e-12!GO:0051169;nuclear transport;1.0230469806779e-11!GO:0006446;regulation of translational initiation;1.1039065410363e-11!GO:0005643;nuclear pore;1.35536421808536e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.37725676303606e-11!GO:0003712;transcription cofactor activity;2.03703175806493e-11!GO:0051726;regulation of cell cycle;2.17833546910369e-11!GO:0000074;regulation of progression through cell cycle;4.50681716324033e-11!GO:0009259;ribonucleotide metabolic process;5.30756566614229e-11!GO:0006164;purine nucleotide biosynthetic process;6.13151484142158e-11!GO:0000087;M phase of mitotic cell cycle;7.12164013966044e-11!GO:0051301;cell division;7.44852465304357e-11!GO:0006163;purine nucleotide metabolic process;8.20063467721733e-11!GO:0065002;intracellular protein transport across a membrane;8.22585374181244e-11!GO:0009260;ribonucleotide biosynthetic process;8.73196730492845e-11!GO:0044432;endoplasmic reticulum part;9.53745548438741e-11!GO:0008026;ATP-dependent helicase activity;1.06407431965325e-10!GO:0043687;post-translational protein modification;1.06407431965325e-10!GO:0031323;regulation of cellular metabolic process;1.07580768162526e-10!GO:0006364;rRNA processing;1.51577150613334e-10!GO:0007067;mitosis;1.623308025108e-10!GO:0006732;coenzyme metabolic process;1.94491984811289e-10!GO:0016072;rRNA metabolic process;2.11811458973089e-10!GO:0000279;M phase;2.40906499078674e-10!GO:0043566;structure-specific DNA binding;2.86688475512217e-10!GO:0005783;endoplasmic reticulum;2.93502475452391e-10!GO:0051028;mRNA transport;4.1525870943805e-10!GO:0009152;purine ribonucleotide biosynthetic process;5.63433957988905e-10!GO:0006399;tRNA metabolic process;5.71911479566669e-10!GO:0009150;purine ribonucleotide metabolic process;7.51212204662521e-10!GO:0003697;single-stranded DNA binding;8.63358597384027e-10!GO:0048193;Golgi vesicle transport;1.1624051458318e-09!GO:0006350;transcription;1.25572620163854e-09!GO:0017038;protein import;1.52918783872714e-09!GO:0006366;transcription from RNA polymerase II promoter;1.71750959003924e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.0371812536678e-09!GO:0046930;pore complex;2.07024754813432e-09!GO:0019829;cation-transporting ATPase activity;2.52687257823616e-09!GO:0006261;DNA-dependent DNA replication;2.55103614628296e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.79554364722698e-09!GO:0030532;small nuclear ribonucleoprotein complex;3.66434123256042e-09!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.21248327176208e-09!GO:0005839;proteasome core complex (sensu Eukaryota);4.7128020121275e-09!GO:0042981;regulation of apoptosis;5.03237263e-09!GO:0010468;regulation of gene expression;5.46713258962362e-09!GO:0009060;aerobic respiration;5.89450740367742e-09!GO:0009056;catabolic process;5.95316709704967e-09!GO:0050789;regulation of biological process;6.89843382667342e-09!GO:0008639;small protein conjugating enzyme activity;7.63559109721879e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.71370561881468e-09!GO:0016779;nucleotidyltransferase activity;7.78991897522153e-09!GO:0016787;hydrolase activity;8.77063807519004e-09!GO:0043067;regulation of programmed cell death;9.09262155759871e-09!GO:0016192;vesicle-mediated transport;1.17354406577256e-08!GO:0004842;ubiquitin-protein ligase activity;1.40458481668748e-08!GO:0003713;transcription coactivator activity;1.71494688769091e-08!GO:0009055;electron carrier activity;2.04674985206858e-08!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.65985747580475e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.80811143284284e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.95422625215451e-08!GO:0004298;threonine endopeptidase activity;3.65429336099676e-08!GO:0008565;protein transporter activity;3.84098233637529e-08!GO:0009142;nucleoside triphosphate biosynthetic process;4.65316506943146e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.65316506943146e-08!GO:0051188;cofactor biosynthetic process;5.13858666387096e-08!GO:0005789;endoplasmic reticulum membrane;5.16627407679946e-08!GO:0045333;cellular respiration;5.37562033196178e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.54282605256745e-08!GO:0003677;DNA binding;7.04988211276449e-08!GO:0015986;ATP synthesis coupled proton transport;7.25726041507613e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.25726041507613e-08!GO:0015078;hydrogen ion transmembrane transporter activity;8.00229511120673e-08!GO:0019787;small conjugating protein ligase activity;9.18673494899873e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.92790213609216e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.92790213609216e-08!GO:0051246;regulation of protein metabolic process;1.04515696507392e-07!GO:0005793;ER-Golgi intermediate compartment;1.10453676838127e-07!GO:0000786;nucleosome;1.13917148921093e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.22813998710354e-07!GO:0009117;nucleotide metabolic process;1.24539058265579e-07!GO:0009141;nucleoside triphosphate metabolic process;1.3253732800168e-07!GO:0005794;Golgi apparatus;1.38602198992958e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.52107393713765e-07!GO:0009144;purine nucleoside triphosphate metabolic process;2.52107393713765e-07!GO:0006793;phosphorus metabolic process;2.8771222899749e-07!GO:0006796;phosphate metabolic process;2.8771222899749e-07!GO:0016740;transferase activity;2.96915901916562e-07!GO:0006461;protein complex assembly;3.03106302860514e-07!GO:0032774;RNA biosynthetic process;3.28723381065969e-07!GO:0043069;negative regulation of programmed cell death;3.31019190451044e-07!GO:0006916;anti-apoptosis;3.70939935170664e-07!GO:0043066;negative regulation of apoptosis;4.06298493299156e-07!GO:0006351;transcription, DNA-dependent;4.57313162092556e-07!GO:0045259;proton-transporting ATP synthase complex;4.68394636924679e-07!GO:0016563;transcription activator activity;4.91161090814249e-07!GO:0005657;replication fork;4.97347450985907e-07!GO:0000245;spliceosome assembly;6.06417308151416e-07!GO:0016881;acid-amino acid ligase activity;7.28926410401227e-07!GO:0048523;negative regulation of cellular process;7.31636614572867e-07!GO:0007005;mitochondrion organization and biogenesis;8.47249276826644e-07!GO:0006754;ATP biosynthetic process;8.47404560695135e-07!GO:0006753;nucleoside phosphate metabolic process;8.47404560695135e-07!GO:0016469;proton-transporting two-sector ATPase complex;8.81093409722727e-07!GO:0051170;nuclear import;1.16603221895058e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.17815273077204e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.17815273077204e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.17815273077204e-06!GO:0032446;protein modification by small protein conjugation;1.32605686703279e-06!GO:0045449;regulation of transcription;1.57206960365152e-06!GO:0006099;tricarboxylic acid cycle;1.58438604831444e-06!GO:0046356;acetyl-CoA catabolic process;1.58438604831444e-06!GO:0006401;RNA catabolic process;1.75427752283401e-06!GO:0016567;protein ubiquitination;1.83748263703201e-06!GO:0009108;coenzyme biosynthetic process;1.84386632574476e-06!GO:0016310;phosphorylation;1.87976145807941e-06!GO:0046034;ATP metabolic process;2.67064142707931e-06!GO:0043038;amino acid activation;2.68392597728672e-06!GO:0006418;tRNA aminoacylation for protein translation;2.68392597728672e-06!GO:0043039;tRNA aminoacylation;2.68392597728672e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.73671512710592e-06!GO:0008094;DNA-dependent ATPase activity;2.92372628066228e-06!GO:0006606;protein import into nucleus;3.04246202666067e-06!GO:0006084;acetyl-CoA metabolic process;3.78653750175862e-06!GO:0006950;response to stress;4.23280361691797e-06!GO:0000775;chromosome, pericentric region;4.4171184378404e-06!GO:0003690;double-stranded DNA binding;4.51445381456551e-06!GO:0006310;DNA recombination;4.81637622385309e-06!GO:0005762;mitochondrial large ribosomal subunit;8.1496157598883e-06!GO:0000315;organellar large ribosomal subunit;8.1496157598883e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;8.57313201129054e-06!GO:0005768;endosome;9.84627413547663e-06!GO:0006613;cotranslational protein targeting to membrane;9.85143447583921e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.06696347493687e-05!GO:0051325;interphase;1.08603030905435e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.18140126495896e-05!GO:0005813;centrosome;1.18140126495896e-05!GO:0043623;cellular protein complex assembly;1.22947002509971e-05!GO:0006752;group transfer coenzyme metabolic process;1.31510687971405e-05!GO:0008654;phospholipid biosynthetic process;1.31510687971405e-05!GO:0051329;interphase of mitotic cell cycle;1.31723656173708e-05!GO:0000314;organellar small ribosomal subunit;1.33311417866551e-05!GO:0005763;mitochondrial small ribosomal subunit;1.33311417866551e-05!GO:0009109;coenzyme catabolic process;1.55834837888051e-05!GO:0016564;transcription repressor activity;1.64133890580539e-05!GO:0005773;vacuole;1.72821755089313e-05!GO:0048519;negative regulation of biological process;1.87252570446597e-05!GO:0005815;microtubule organizing center;1.99857774059098e-05!GO:0009165;nucleotide biosynthetic process;2.01108001821507e-05!GO:0003724;RNA helicase activity;2.30089117023399e-05!GO:0000323;lytic vacuole;2.30994528504661e-05!GO:0005764;lysosome;2.30994528504661e-05!GO:0065007;biological regulation;2.39311305889319e-05!GO:0051168;nuclear export;2.45755522893569e-05!GO:0005770;late endosome;2.53363776044671e-05!GO:0031324;negative regulation of cellular metabolic process;2.63822889537522e-05!GO:0016363;nuclear matrix;2.69243776610439e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;2.77137971391036e-05!GO:0003899;DNA-directed RNA polymerase activity;2.90507698910932e-05!GO:0000151;ubiquitin ligase complex;3.0401466974294e-05!GO:0004518;nuclease activity;3.64283883557004e-05!GO:0016741;transferase activity, transferring one-carbon groups;3.71378533159614e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.78264449236331e-05!GO:0019843;rRNA binding;4.25652458163516e-05!GO:0045786;negative regulation of progression through cell cycle;4.30226048684795e-05!GO:0006302;double-strand break repair;4.44057866454182e-05!GO:0006355;regulation of transcription, DNA-dependent;4.76900643390418e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.95425568155822e-05!GO:0008168;methyltransferase activity;5.10106094556185e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;5.20507943293581e-05!GO:0005667;transcription factor complex;6.10029122137927e-05!GO:0003729;mRNA binding;6.22148075817725e-05!GO:0051187;cofactor catabolic process;6.31703861989319e-05!GO:0051427;hormone receptor binding;7.30049317545585e-05!GO:0003684;damaged DNA binding;8.12940572656812e-05!GO:0043021;ribonucleoprotein binding;8.42528968493044e-05!GO:0016481;negative regulation of transcription;9.6299427336059e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000102054467091198!GO:0015399;primary active transmembrane transporter activity;0.000102054467091198!GO:0000075;cell cycle checkpoint;0.000104972068802117!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000135374440161753!GO:0043681;protein import into mitochondrion;0.000143455069064158!GO:0015630;microtubule cytoskeleton;0.00014380988401873!GO:0031072;heat shock protein binding;0.000146361132155881!GO:0035257;nuclear hormone receptor binding;0.000147794487229471!GO:0006417;regulation of translation;0.00015798084751512!GO:0006612;protein targeting to membrane;0.000164233963874443!GO:0005819;spindle;0.000166506935164444!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000171157426803475!GO:0003682;chromatin binding;0.00017156921081156!GO:0006402;mRNA catabolic process;0.000175557896283292!GO:0007243;protein kinase cascade;0.000196569637144455!GO:0030120;vesicle coat;0.000217564920120613!GO:0030662;coated vesicle membrane;0.000217564920120613!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000224810807188521!GO:0008033;tRNA processing;0.000231567075996813!GO:0003678;DNA helicase activity;0.000232102140081605!GO:0048475;coated membrane;0.000261670386515343!GO:0030117;membrane coat;0.000261670386515343!GO:0009892;negative regulation of metabolic process;0.000287357180954286!GO:0006352;transcription initiation;0.000290855699487437!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000303228124009054!GO:0046474;glycerophospholipid biosynthetic process;0.000307024237223446!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00032528707539378!GO:0065009;regulation of a molecular function;0.000373934427044321!GO:0045454;cell redox homeostasis;0.000378209814143963!GO:0008186;RNA-dependent ATPase activity;0.000380125870358351!GO:0005885;Arp2/3 protein complex;0.000388723921818166!GO:0005788;endoplasmic reticulum lumen;0.000433584569811515!GO:0032508;DNA duplex unwinding;0.000442132392822016!GO:0032392;DNA geometric change;0.000442132392822016!GO:0000228;nuclear chromosome;0.000446400631559388!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000461339119043329!GO:0000776;kinetochore;0.000469120455205159!GO:0005637;nuclear inner membrane;0.000488493041030526!GO:0003714;transcription corepressor activity;0.000517949205408364!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000520731372281315!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00052535073386845!GO:0044452;nucleolar part;0.00052909147712499!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000548059610938891!GO:0051052;regulation of DNA metabolic process;0.000573400093702696!GO:0019899;enzyme binding;0.000583634042167904!GO:0007006;mitochondrial membrane organization and biogenesis;0.00059611661448125!GO:0004527;exonuclease activity;0.00060631873589725!GO:0016859;cis-trans isomerase activity;0.000607551658199744!GO:0006626;protein targeting to mitochondrion;0.000639904451874572!GO:0016853;isomerase activity;0.000687351868205656!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000706220653771426!GO:0046489;phosphoinositide biosynthetic process;0.000729002009590395!GO:0016491;oxidoreductase activity;0.000732328525368936!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00078855625427489!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00078855625427489!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00078855625427489!GO:0006414;translational elongation;0.000858572288868118!GO:0031982;vesicle;0.000937307720370621!GO:0005525;GTP binding;0.000943826860432508!GO:0030384;phosphoinositide metabolic process;0.000964169677579059!GO:0004004;ATP-dependent RNA helicase activity;0.00109523000965631!GO:0044454;nuclear chromosome part;0.00110170662537264!GO:0051920;peroxiredoxin activity;0.00110883414271208!GO:0006338;chromatin remodeling;0.00111433175465604!GO:0006268;DNA unwinding during replication;0.00115450722353802!GO:0044440;endosomal part;0.00120151720931649!GO:0010008;endosome membrane;0.00120151720931649!GO:0043492;ATPase activity, coupled to movement of substances;0.00121222304308514!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00124359903584694!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00124359903584694!GO:0005684;U2-dependent spliceosome;0.00135743576818378!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00137017327409915!GO:0008270;zinc ion binding;0.00137663529590078!GO:0031326;regulation of cellular biosynthetic process;0.00138748722174741!GO:0006650;glycerophospholipid metabolic process;0.00145810490036572!GO:0006405;RNA export from nucleus;0.0014663340087926!GO:0031988;membrane-bound vesicle;0.00153649414569417!GO:0003924;GTPase activity;0.00160223465043599!GO:0031968;organelle outer membrane;0.00167650388728177!GO:0006839;mitochondrial transport;0.00167650388728177!GO:0006383;transcription from RNA polymerase III promoter;0.00168677722102792!GO:0015992;proton transport;0.00169470756991733!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0017197224712156!GO:0008234;cysteine-type peptidase activity;0.00177580813308249!GO:0019867;outer membrane;0.0018241406194211!GO:0007051;spindle organization and biogenesis;0.00183173676549966!GO:0005741;mitochondrial outer membrane;0.00184111406873493!GO:0006818;hydrogen transport;0.00184899385421654!GO:0043414;biopolymer methylation;0.00190359802483148!GO:0015631;tubulin binding;0.00190518624408489!GO:0051087;chaperone binding;0.00190610785311915!GO:0051789;response to protein stimulus;0.001918207394659!GO:0006986;response to unfolded protein;0.001918207394659!GO:0006091;generation of precursor metabolites and energy;0.00201640767552451!GO:0022890;inorganic cation transmembrane transporter activity;0.00204069138360365!GO:0009112;nucleobase metabolic process;0.00215180502159788!GO:0009124;nucleoside monophosphate biosynthetic process;0.00220538780111031!GO:0009123;nucleoside monophosphate metabolic process;0.00220538780111031!GO:0031410;cytoplasmic vesicle;0.00234537655517343!GO:0009116;nucleoside metabolic process;0.00237698254838337!GO:0008632;apoptotic program;0.00241887398634665!GO:0051252;regulation of RNA metabolic process;0.00243852125085944!GO:0015980;energy derivation by oxidation of organic compounds;0.00253649243908218!GO:0006284;base-excision repair;0.00258734598221267!GO:0006611;protein export from nucleus;0.0026849534497534!GO:0005798;Golgi-associated vesicle;0.00283156842422086!GO:0046467;membrane lipid biosynthetic process;0.0028635341537835!GO:0007059;chromosome segregation;0.00290208688219401!GO:0016251;general RNA polymerase II transcription factor activity;0.00304140236511306!GO:0016023;cytoplasmic membrane-bound vesicle;0.00320290128855725!GO:0032561;guanyl ribonucleotide binding;0.00320290128855725!GO:0019001;guanyl nucleotide binding;0.00320290128855725!GO:0033116;ER-Golgi intermediate compartment membrane;0.00326476589092025!GO:0030880;RNA polymerase complex;0.00326476589092025!GO:0043488;regulation of mRNA stability;0.00329107781726248!GO:0043487;regulation of RNA stability;0.00329107781726248!GO:0043596;nuclear replication fork;0.00336833277294996!GO:0008312;7S RNA binding;0.00341076825194975!GO:0048500;signal recognition particle;0.00347776589758171!GO:0004576;oligosaccharyl transferase activity;0.003726996246113!GO:0046483;heterocycle metabolic process;0.00380871157296688!GO:0042802;identical protein binding;0.00384805250485726!GO:0009889;regulation of biosynthetic process;0.00388535176057704!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00403759177325902!GO:0046914;transition metal ion binding;0.00408539273605269!GO:0003887;DNA-directed DNA polymerase activity;0.00417012401320935!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00420172725258947!GO:0006275;regulation of DNA replication;0.00430918652089571!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00434094058542767!GO:0015002;heme-copper terminal oxidase activity;0.00434094058542767!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00434094058542767!GO:0004129;cytochrome-c oxidase activity;0.00434094058542767!GO:0030867;rough endoplasmic reticulum membrane;0.00440949246048598!GO:0006506;GPI anchor biosynthetic process;0.00443640608435478!GO:0005769;early endosome;0.00447517988097803!GO:0000178;exosome (RNase complex);0.00451553573788256!GO:0048471;perinuclear region of cytoplasm;0.00454253792010747!GO:0044431;Golgi apparatus part;0.00455347368869309!GO:0006220;pyrimidine nucleotide metabolic process;0.00455347368869309!GO:0047485;protein N-terminus binding;0.00455802397784948!GO:0004540;ribonuclease activity;0.00496806707293822!GO:0032259;methylation;0.00503515297083983!GO:0009161;ribonucleoside monophosphate metabolic process;0.0050605677175104!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0050605677175104!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00512455083249633!GO:0045047;protein targeting to ER;0.00512455083249633!GO:0000059;protein import into nucleus, docking;0.00525281106776001!GO:0046966;thyroid hormone receptor binding;0.00539124243727532!GO:0005048;signal sequence binding;0.00589580754750657!GO:0008250;oligosaccharyl transferase complex;0.00603923549505363!GO:0003711;transcription elongation regulator activity;0.00627990976543445!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00628031201905633!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00637737702727871!GO:0016197;endosome transport;0.00638330886011977!GO:0042393;histone binding;0.00639839857096378!GO:0007021;tubulin folding;0.00675953061525344!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00675953061525344!GO:0000428;DNA-directed RNA polymerase complex;0.00675953061525344!GO:0006144;purine base metabolic process;0.00677612206023617!GO:0006595;polyamine metabolic process;0.00693481728418945!GO:0043022;ribosome binding;0.00713784593574636!GO:0003725;double-stranded RNA binding;0.00715555514244551!GO:0000287;magnesium ion binding;0.00716437103315278!GO:0006289;nucleotide-excision repair;0.00717520981149228!GO:0016272;prefoldin complex;0.00720463617847021!GO:0006505;GPI anchor metabolic process;0.00728239446026876!GO:0006270;DNA replication initiation;0.00730047993403792!GO:0031902;late endosome membrane;0.00748243477808263!GO:0004674;protein serine/threonine kinase activity;0.00752594148567843!GO:0006497;protein amino acid lipidation;0.00761072542249514!GO:0007088;regulation of mitosis;0.00787202330481558!GO:0016408;C-acyltransferase activity;0.00797962681948029!GO:0008408;3'-5' exonuclease activity;0.00801585729091703!GO:0006891;intra-Golgi vesicle-mediated transport;0.00804098362445308!GO:0051539;4 iron, 4 sulfur cluster binding;0.00814204542293816!GO:0000118;histone deacetylase complex;0.00814204542293816!GO:0009615;response to virus;0.00840495620891808!GO:0018193;peptidyl-amino acid modification;0.00842568748418013!GO:0043065;positive regulation of apoptosis;0.00842671012936154!GO:0016584;nucleosome positioning;0.00849953227781306!GO:0005758;mitochondrial intermembrane space;0.00864616454814509!GO:0004532;exoribonuclease activity;0.00864616454814509!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00864616454814509!GO:0051287;NAD binding;0.00899374939994725!GO:0008139;nuclear localization sequence binding;0.00907687419157758!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00908762951264428!GO:0031570;DNA integrity checkpoint;0.00913306504395049!GO:0051540;metal cluster binding;0.0093566614453475!GO:0051536;iron-sulfur cluster binding;0.0093566614453475!GO:0007050;cell cycle arrest;0.00951394280602889!GO:0040029;regulation of gene expression, epigenetic;0.00985494497614098!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0100091081881951!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0103908810573165!GO:0008276;protein methyltransferase activity;0.0104152783893432!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0106833646624495!GO:0046983;protein dimerization activity;0.0109322139053193!GO:0032984;macromolecular complex disassembly;0.0110750669999395!GO:0005869;dynactin complex;0.0111611230988899!GO:0043068;positive regulation of programmed cell death;0.0113026100876592!GO:0006376;mRNA splice site selection;0.0113052287812527!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0113052287812527!GO:0032200;telomere organization and biogenesis;0.0114277474508982!GO:0000723;telomere maintenance;0.0114277474508982!GO:0030521;androgen receptor signaling pathway;0.011704913949721!GO:0008180;signalosome;0.0117913002537419!GO:0006367;transcription initiation from RNA polymerase II promoter;0.011795037474385!GO:0000922;spindle pole;0.0118126792692066!GO:0050790;regulation of catalytic activity;0.0118126792692066!GO:0045045;secretory pathway;0.0118753053415059!GO:0007093;mitotic cell cycle checkpoint;0.0119892277044893!GO:0046128;purine ribonucleoside metabolic process;0.0121380114732778!GO:0042278;purine nucleoside metabolic process;0.0121380114732778!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0122321260680425!GO:0008097;5S rRNA binding;0.0122369798666353!GO:0048522;positive regulation of cellular process;0.0123541680040097!GO:0030518;steroid hormone receptor signaling pathway;0.0129588778497572!GO:0018196;peptidyl-asparagine modification;0.012964677946572!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.012964677946572!GO:0006672;ceramide metabolic process;0.012964677946572!GO:0005832;chaperonin-containing T-complex;0.0133818557800188!GO:0030041;actin filament polymerization;0.0134119427394442!GO:0031124;mRNA 3'-end processing;0.0134119427394442!GO:0045947;negative regulation of translational initiation;0.0135383020318062!GO:0043601;nuclear replisome;0.0136796487306465!GO:0030894;replisome;0.0136796487306465!GO:0045892;negative regulation of transcription, DNA-dependent;0.0139390361436006!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0141047449290024!GO:0009451;RNA modification;0.0141047449290024!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.0143296985681032!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.0143296985681032!GO:0009126;purine nucleoside monophosphate metabolic process;0.0143296985681032!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.0143296985681032!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0143296985681032!GO:0010257;NADH dehydrogenase complex assembly;0.0143296985681032!GO:0033108;mitochondrial respiratory chain complex assembly;0.0143296985681032!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0144908963560743!GO:0006917;induction of apoptosis;0.0146171566933817!GO:0007052;mitotic spindle organization and biogenesis;0.0146401918154195!GO:0000082;G1/S transition of mitotic cell cycle;0.0147048268893145!GO:0000049;tRNA binding;0.0149893966639921!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0152072527829048!GO:0048487;beta-tubulin binding;0.0154590431468122!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0159359355583582!GO:0000096;sulfur amino acid metabolic process;0.0162296609308547!GO:0005669;transcription factor TFIID complex;0.0162419644625823!GO:0019752;carboxylic acid metabolic process;0.0162682332963956!GO:0030663;COPI coated vesicle membrane;0.0166372979897477!GO:0030126;COPI vesicle coat;0.0166372979897477!GO:0016585;chromatin remodeling complex;0.0166413900323687!GO:0006082;organic acid metabolic process;0.0172235344238897!GO:0030433;ER-associated protein catabolic process;0.017532132751252!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.017532132751252!GO:0022411;cellular component disassembly;0.0181167350448441!GO:0006643;membrane lipid metabolic process;0.0184972112578339!GO:0012502;induction of programmed cell death;0.0189242716384549!GO:0022415;viral reproductive process;0.0189812433030254!GO:0004003;ATP-dependent DNA helicase activity;0.0191986001177344!GO:0030176;integral to endoplasmic reticulum membrane;0.019976954061563!GO:0005774;vacuolar membrane;0.0202051709444147!GO:0043241;protein complex disassembly;0.0212737198059526!GO:0042158;lipoprotein biosynthetic process;0.0217377406326565!GO:0007242;intracellular signaling cascade;0.0217377406326565!GO:0051098;regulation of binding;0.0217377406326565!GO:0033367;protein localization in mast cell secretory granule;0.0217377406326565!GO:0033365;protein localization in organelle;0.0217377406326565!GO:0033371;T cell secretory granule organization and biogenesis;0.0217377406326565!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.0217377406326565!GO:0033375;protease localization in T cell secretory granule;0.0217377406326565!GO:0042629;mast cell granule;0.0217377406326565!GO:0033377;maintenance of protein localization in T cell secretory granule;0.0217377406326565!GO:0033364;mast cell secretory granule organization and biogenesis;0.0217377406326565!GO:0033380;granzyme B localization in T cell secretory granule;0.0217377406326565!GO:0033379;maintenance of protease localization in T cell secretory granule;0.0217377406326565!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.0217377406326565!GO:0033368;protease localization in mast cell secretory granule;0.0217377406326565!GO:0033366;protein localization in secretory granule;0.0217377406326565!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.0217377406326565!GO:0033374;protein localization in T cell secretory granule;0.0217377406326565!GO:0000792;heterochromatin;0.021913725720773!GO:0005663;DNA replication factor C complex;0.0219869514107317!GO:0006301;postreplication repair;0.0220085653355346!GO:0007034;vacuolar transport;0.0220085653355346!GO:0035258;steroid hormone receptor binding;0.0221944425074769!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0224087451878093!GO:0000726;non-recombinational repair;0.0224508811576417!GO:0051053;negative regulation of DNA metabolic process;0.0226705829735313!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0227946588296067!GO:0031625;ubiquitin protein ligase binding;0.0234801784800151!GO:0009081;branched chain family amino acid metabolic process;0.0234858710865614!GO:0003746;translation elongation factor activity;0.0235962809793204!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0239389175056908!GO:0008022;protein C-terminus binding;0.0244267945497068!GO:0032940;secretion by cell;0.0245863478095373!GO:0009119;ribonucleoside metabolic process;0.0246094954903881!GO:0007040;lysosome organization and biogenesis;0.024624025194573!GO:0019783;small conjugating protein-specific protease activity;0.0246709083889917!GO:0031252;leading edge;0.0248540107986936!GO:0000077;DNA damage checkpoint;0.0250652281764954!GO:0006607;NLS-bearing substrate import into nucleus;0.0253690023839797!GO:0015036;disulfide oxidoreductase activity;0.0258830097832286!GO:0030137;COPI-coated vesicle;0.0265590264467027!GO:0043284;biopolymer biosynthetic process;0.026575675570409!GO:0004197;cysteine-type endopeptidase activity;0.02681509872418!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.02681509872418!GO:0043130;ubiquitin binding;0.0274298423711729!GO:0032182;small conjugating protein binding;0.0274298423711729!GO:0046519;sphingoid metabolic process;0.0280295686206224!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0281990900870392!GO:0000139;Golgi membrane;0.0282390688558523!GO:0000339;RNA cap binding;0.028255260006369!GO:0009967;positive regulation of signal transduction;0.028255260006369!GO:0009303;rRNA transcription;0.0283670770281237!GO:0019206;nucleoside kinase activity;0.028648964174452!GO:0051059;NF-kappaB binding;0.028648964174452!GO:0000790;nuclear chromatin;0.0287788474361774!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0293076334749906!GO:0006520;amino acid metabolic process;0.0295227953427417!GO:0006984;ER-nuclear signaling pathway;0.0307358116872821!GO:0008538;proteasome activator activity;0.0307688091656583!GO:0019377;glycolipid catabolic process;0.0310557019455085!GO:0030134;ER to Golgi transport vesicle;0.0325061645321106!GO:0046822;regulation of nucleocytoplasmic transport;0.0325503667284673!GO:0030658;transport vesicle membrane;0.0325936422080639!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0327194040427627!GO:0004843;ubiquitin-specific protease activity;0.0327437003917844!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0328057115819205!GO:0004300;enoyl-CoA hydratase activity;0.0338542282082835!GO:0032404;mismatch repair complex binding;0.0344529910212507!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0344563280560129!GO:0005784;translocon complex;0.0354607578569163!GO:0042770;DNA damage response, signal transduction;0.0358248461813674!GO:0006979;response to oxidative stress;0.0358248461813674!GO:0046479;glycosphingolipid catabolic process;0.0358789998418858!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.036459444108411!GO:0015923;mannosidase activity;0.0367524125406638!GO:0008637;apoptotic mitochondrial changes;0.0367718225241471!GO:0046112;nucleobase biosynthetic process;0.0367718225241471!GO:0006740;NADPH regeneration;0.0372681420207043!GO:0006098;pentose-phosphate shunt;0.0372681420207043!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0372925928671743!GO:0045039;protein import into mitochondrial inner membrane;0.0372925928671743!GO:0000725;recombinational repair;0.0372925928671743!GO:0000724;double-strand break repair via homologous recombination;0.0372925928671743!GO:0008536;Ran GTPase binding;0.0374544433833165!GO:0000209;protein polyubiquitination;0.0374544433833165!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0374544433833165!GO:0000303;response to superoxide;0.0374544433833165!GO:0006730;one-carbon compound metabolic process;0.0374544433833165!GO:0019079;viral genome replication;0.0374544433833165!GO:0043624;cellular protein complex disassembly;0.0374544433833165!GO:0035267;NuA4 histone acetyltransferase complex;0.0375648102889506!GO:0004221;ubiquitin thiolesterase activity;0.0379055391499431!GO:0030522;intracellular receptor-mediated signaling pathway;0.0388402096296025!GO:0031123;RNA 3'-end processing;0.0389777748343364!GO:0051320;S phase;0.0394905648576454!GO:0016605;PML body;0.0397380592264932!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0399665115275679!GO:0000175;3'-5'-exoribonuclease activity;0.0403800419003825!GO:0031970;organelle envelope lumen;0.0406733878275741!GO:0044437;vacuolar part;0.0409155658907573!GO:0008017;microtubule binding;0.0409155658907573!GO:0044438;microbody part;0.0409155658907573!GO:0044439;peroxisomal part;0.0409155658907573!GO:0045815;positive regulation of gene expression, epigenetic;0.0411513732308387!GO:0016790;thiolester hydrolase activity;0.0415531238881147!GO:0016279;protein-lysine N-methyltransferase activity;0.0419266138921038!GO:0018024;histone-lysine N-methyltransferase activity;0.0419266138921038!GO:0016278;lysine N-methyltransferase activity;0.0419266138921038!GO:0005765;lysosomal membrane;0.0420394431570974!GO:0008320;protein transmembrane transporter activity;0.044092755007846!GO:0000781;chromosome, telomeric region;0.0445253238538259!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0454644204423137!GO:0030127;COPII vesicle coat;0.0456537897893715!GO:0012507;ER to Golgi transport vesicle membrane;0.0456537897893715!GO:0006516;glycoprotein catabolic process;0.0460134477241651!GO:0008047;enzyme activator activity;0.0462050282432925!GO:0006779;porphyrin biosynthetic process;0.0465805108076566!GO:0033014;tetrapyrrole biosynthetic process;0.0465805108076566!GO:0051235;maintenance of localization;0.0469480882940089!GO:0005791;rough endoplasmic reticulum;0.0473206816523525!GO:0019238;cyclohydrolase activity;0.0473403696239312!GO:0008213;protein amino acid alkylation;0.0473880664666607!GO:0006479;protein amino acid methylation;0.0473880664666607!GO:0006360;transcription from RNA polymerase I promoter;0.0476013565454953!GO:0000123;histone acetyltransferase complex;0.0477083951266827!GO:0048146;positive regulation of fibroblast proliferation;0.0477083951266827!GO:0008173;RNA methyltransferase activity;0.0477083951266827!GO:0003756;protein disulfide isomerase activity;0.0480606653106898!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0480606653106898!GO:0005095;GTPase inhibitor activity;0.0485823407064793!GO:0006644;phospholipid metabolic process;0.0487637549697628!GO:0006378;mRNA polyadenylation;0.0489049046958062!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0491171661440186!GO:0007033;vacuole organization and biogenesis;0.0494463104368242!GO:0006596;polyamine biosynthetic process;0.0495177260124939 | |||
|sample_id=12224 | |sample_id=12224 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=bone marrow | |sample_tissue=bone marrow | ||
|top_motifs=MYB:2.23733672757;DMAP1_NCOR{1,2}_SMARC:2.06042414542;POU2F1..3:1.91931746039;ELF1,2,4:1.84624818301;E2F1..5:1.72879687523;STAT1,3:1.64207007668;CREB1:1.57165818867;RUNX1..3:1.46559334508;SPIB:1.45591852756;FOX{I1,J2}:1.39385881567;ATF4:1.3492886003;HIF1A:1.29054949087;ELK1,4_GABP{A,B1}:1.28311883248;ALX1:1.2493716601;YY1:1.18519941466;NANOG{mouse}:1.17999400442;NFY{A,B,C}:1.16265434695;TLX2:1.16264325625;RFX1:1.13245079358;ATF5_CREB3:1.12175533041;RFX2..5_RFXANK_RFXAP:1.11962496518;CDX1,2,4:1.06765483296;ETS1,2:1.0234023634;GATA6:1.02298506527;PBX1:1.00916474012;SPI1:0.946233997613;PAX2:0.944779876692;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.919340621521;IRF1,2:0.914682841071;BREu{core}:0.885886297908;RXR{A,B,G}:0.858055319774;NFKB1_REL_RELA:0.771161204911;NANOG:0.717539481682;RBPJ:0.715595610258;FOXN1:0.704525335393;ZNF143:0.682352124858;FOX{D1,D2}:0.664424383055;XBP1:0.63135375121;NFIL3:0.599462895574;GFI1:0.520196353722;NRF1:0.502529160331;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.499560546797;FOXP3:0.481768877891;bHLH_family:0.45133688414;OCT4_SOX2{dimer}:0.448286924562;NR5A1,2:0.444149624176;SOX2:0.431559705298;PAX5:0.430322174527;FOXQ1:0.429510310004;HBP1_HMGB_SSRP1_UBTF:0.428548720646;FOXA2:0.414742483408;FOX{F1,F2,J1}:0.408205118081;SOX{8,9,10}:0.404387694009;PAX8:0.376509972223;TGIF1:0.372336403694;ATF2:0.368413028342;SREBF1,2:0.360578820904;BPTF:0.352483304739;ARID5B:0.342339609042;MYOD1:0.312455369836;RORA:0.310571750703;VSX1,2:0.305941297535;MEF2{A,B,C,D}:0.273846705042;MYBL2:0.269724908934;NKX6-1,2:0.240572459195;DBP:0.228650714285;EP300:0.19648920348;HAND1,2:0.191180095641;FOXP1:0.118983254467;FOXO1,3,4:0.108647781403;TBP:0.0863434601622;HES1:0.0810609676644;CEBPA,B_DDIT3:0.0712124066916;NKX2-3_NKX2-5:0.0711944552897;POU5F1:0.0632974146405;SOX5:0.0426252241642;IRF7:0.0351288003335;T:0.0326733720832;CUX2:0.00210522461813;JUN:-0.00516229636233;AR:-0.013976935885;PAX6:-0.0499691269041;HLF:-0.0575540701779;HSF1,2:-0.0716690838044;ZEB1:-0.0953597898081;NFATC1..3:-0.11731385049;NFIX:-0.117543789742;EN1,2:-0.119846173321;POU3F1..4:-0.159406463092;GCM1,2:-0.165066089929;NFE2:-0.167998760639;FOSL2:-0.180433862199;NR6A1:-0.184340163983;IKZF2:-0.212539394866;TAL1_TCF{3,4,12}:-0.232830373655;FOS_FOS{B,L1}_JUN{B,D}:-0.233811538333;BACH2:-0.244232099439;PRRX1,2:-0.24906068817;RXRA_VDR{dimer}:-0.250423370785;GZF1:-0.276118436637;TBX4,5:-0.280512630422;SOX17:-0.28174022358;LEF1_TCF7_TCF7L1,2:-0.289568963808;STAT5{A,B}:-0.303790109397;MZF1:-0.305111620737;LMO2:-0.312811603748;NHLH1,2:-0.337554077911;HMX1:-0.341848984971;HOX{A6,A7,B6,B7}:-0.355436965814;HIC1:-0.355798081055;SRF:-0.372198859684;PDX1:-0.397144904218;NKX2-2,8:-0.404430257965;PAX3,7:-0.4131749547;HNF1A:-0.434824633289;HNF4A_NR2F1,2:-0.45529891844;NKX3-1:-0.455838243774;CRX:-0.45947137233;REST:-0.479738224613;PAX4:-0.48310092127;EGR1..3:-0.490933255734;AHR_ARNT_ARNT2:-0.494175546986;ESR1:-0.495272571621;PATZ1:-0.499748733244;SNAI1..3:-0.513966163121;NFE2L2:-0.523796937469;ZNF238:-0.54022102735;ZFP161:-0.542756244342;SP1:-0.544032054824;PITX1..3:-0.547247959604;STAT2,4,6:-0.559790668866;AIRE:-0.57381510812;ATF6:-0.578532672361;TFAP2{A,C}:-0.606390341306;TEF:-0.607450665141;MYFfamily:-0.617500091023;HOXA9_MEIS1:-0.629099509146;ZNF148:-0.646553402636;MAZ:-0.660112764612;ESRRA:-0.666995759116;TOPORS:-0.689617352412;EBF1:-0.692966412367;NKX2-1,4:-0.699309146024;TFDP1:-0.702684327972;MAFB:-0.709055359062;POU1F1:-0.709386296336;MTF1:-0.728277203068;FOXL1:-0.748707929487;MTE{core}:-0.749073128473;HOX{A4,D4}:-0.75231031115;PPARG:-0.775912911341;TFAP2B:-0.790537275243;GTF2I:-0.851069367029;HOX{A5,B5}:-0.854299330971;LHX3,4:-0.941361234877;TFAP4:-0.945085836983;ZBTB16:-0.948149450117;ZNF384:-0.95429627136;ALX4:-0.965562800204;EVI1:-0.969425032193;ZNF423:-0.978448980015;GLI1..3:-0.979250238783;PRDM1:-0.984863804566;MED-1{core}:-1.00864070432;ONECUT1,2:-1.04686272966;CDC5L:-1.06599528618;GTF2A1,2:-1.0715514682;ZBTB6:-1.09379492829;FOXD3:-1.09659301481;ZIC1..3:-1.10145331163;TP53:-1.11542741195;IKZF1:-1.16843258565;XCPE1{core}:-1.18755501646;FOXM1:-1.19254875788;TEAD1:-1.22053596833;TLX1..3_NFIC{dimer}:-1.2721841346;KLF4:-1.29112574924;HMGA1,2:-1.29767219849;NFE2L1:-1.31661789085;POU6F1:-1.41844620681;GFI1B:-1.43232532369;ADNP_IRX_SIX_ZHX:-1.51193971225;UFEwm:-1.54098417412;GATA4:-1.54155195968;RREB1:-1.56235183012;PAX1,9:-1.58260022432;SMAD1..7,9:-1.66411115288;TFCP2:-1.8510795727;NR1H4:-1.85180705908;NR3C1:-2.08120161208;SPZ1:-2.10670731981;NKX3-2:-2.11472380139 | |top_motifs=MYB:2.23733672757;DMAP1_NCOR{1,2}_SMARC:2.06042414542;POU2F1..3:1.91931746039;ELF1,2,4:1.84624818301;E2F1..5:1.72879687523;STAT1,3:1.64207007668;CREB1:1.57165818867;RUNX1..3:1.46559334508;SPIB:1.45591852756;FOX{I1,J2}:1.39385881567;ATF4:1.3492886003;HIF1A:1.29054949087;ELK1,4_GABP{A,B1}:1.28311883248;ALX1:1.2493716601;YY1:1.18519941466;NANOG{mouse}:1.17999400442;NFY{A,B,C}:1.16265434695;TLX2:1.16264325625;RFX1:1.13245079358;ATF5_CREB3:1.12175533041;RFX2..5_RFXANK_RFXAP:1.11962496518;CDX1,2,4:1.06765483296;ETS1,2:1.0234023634;GATA6:1.02298506527;PBX1:1.00916474012;SPI1:0.946233997613;PAX2:0.944779876692;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.919340621521;IRF1,2:0.914682841071;BREu{core}:0.885886297908;RXR{A,B,G}:0.858055319774;NFKB1_REL_RELA:0.771161204911;NANOG:0.717539481682;RBPJ:0.715595610258;FOXN1:0.704525335393;ZNF143:0.682352124858;FOX{D1,D2}:0.664424383055;XBP1:0.63135375121;NFIL3:0.599462895574;GFI1:0.520196353722;NRF1:0.502529160331;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.499560546797;FOXP3:0.481768877891;bHLH_family:0.45133688414;OCT4_SOX2{dimer}:0.448286924562;NR5A1,2:0.444149624176;SOX2:0.431559705298;PAX5:0.430322174527;FOXQ1:0.429510310004;HBP1_HMGB_SSRP1_UBTF:0.428548720646;FOXA2:0.414742483408;FOX{F1,F2,J1}:0.408205118081;SOX{8,9,10}:0.404387694009;PAX8:0.376509972223;TGIF1:0.372336403694;ATF2:0.368413028342;SREBF1,2:0.360578820904;BPTF:0.352483304739;ARID5B:0.342339609042;MYOD1:0.312455369836;RORA:0.310571750703;VSX1,2:0.305941297535;MEF2{A,B,C,D}:0.273846705042;MYBL2:0.269724908934;NKX6-1,2:0.240572459195;DBP:0.228650714285;EP300:0.19648920348;HAND1,2:0.191180095641;FOXP1:0.118983254467;FOXO1,3,4:0.108647781403;TBP:0.0863434601622;HES1:0.0810609676644;CEBPA,B_DDIT3:0.0712124066916;NKX2-3_NKX2-5:0.0711944552897;POU5F1:0.0632974146405;SOX5:0.0426252241642;IRF7:0.0351288003335;T:0.0326733720832;CUX2:0.00210522461813;JUN:-0.00516229636233;AR:-0.013976935885;PAX6:-0.0499691269041;HLF:-0.0575540701779;HSF1,2:-0.0716690838044;ZEB1:-0.0953597898081;NFATC1..3:-0.11731385049;NFIX:-0.117543789742;EN1,2:-0.119846173321;POU3F1..4:-0.159406463092;GCM1,2:-0.165066089929;NFE2:-0.167998760639;FOSL2:-0.180433862199;NR6A1:-0.184340163983;IKZF2:-0.212539394866;TAL1_TCF{3,4,12}:-0.232830373655;FOS_FOS{B,L1}_JUN{B,D}:-0.233811538333;BACH2:-0.244232099439;PRRX1,2:-0.24906068817;RXRA_VDR{dimer}:-0.250423370785;GZF1:-0.276118436637;TBX4,5:-0.280512630422;SOX17:-0.28174022358;LEF1_TCF7_TCF7L1,2:-0.289568963808;STAT5{A,B}:-0.303790109397;MZF1:-0.305111620737;LMO2:-0.312811603748;NHLH1,2:-0.337554077911;HMX1:-0.341848984971;HOX{A6,A7,B6,B7}:-0.355436965814;HIC1:-0.355798081055;SRF:-0.372198859684;PDX1:-0.397144904218;NKX2-2,8:-0.404430257965;PAX3,7:-0.4131749547;HNF1A:-0.434824633289;HNF4A_NR2F1,2:-0.45529891844;NKX3-1:-0.455838243774;CRX:-0.45947137233;REST:-0.479738224613;PAX4:-0.48310092127;EGR1..3:-0.490933255734;AHR_ARNT_ARNT2:-0.494175546986;ESR1:-0.495272571621;PATZ1:-0.499748733244;SNAI1..3:-0.513966163121;NFE2L2:-0.523796937469;ZNF238:-0.54022102735;ZFP161:-0.542756244342;SP1:-0.544032054824;PITX1..3:-0.547247959604;STAT2,4,6:-0.559790668866;AIRE:-0.57381510812;ATF6:-0.578532672361;TFAP2{A,C}:-0.606390341306;TEF:-0.607450665141;MYFfamily:-0.617500091023;HOXA9_MEIS1:-0.629099509146;ZNF148:-0.646553402636;MAZ:-0.660112764612;ESRRA:-0.666995759116;TOPORS:-0.689617352412;EBF1:-0.692966412367;NKX2-1,4:-0.699309146024;TFDP1:-0.702684327972;MAFB:-0.709055359062;POU1F1:-0.709386296336;MTF1:-0.728277203068;FOXL1:-0.748707929487;MTE{core}:-0.749073128473;HOX{A4,D4}:-0.75231031115;PPARG:-0.775912911341;TFAP2B:-0.790537275243;GTF2I:-0.851069367029;HOX{A5,B5}:-0.854299330971;LHX3,4:-0.941361234877;TFAP4:-0.945085836983;ZBTB16:-0.948149450117;ZNF384:-0.95429627136;ALX4:-0.965562800204;EVI1:-0.969425032193;ZNF423:-0.978448980015;GLI1..3:-0.979250238783;PRDM1:-0.984863804566;MED-1{core}:-1.00864070432;ONECUT1,2:-1.04686272966;CDC5L:-1.06599528618;GTF2A1,2:-1.0715514682;ZBTB6:-1.09379492829;FOXD3:-1.09659301481;ZIC1..3:-1.10145331163;TP53:-1.11542741195;IKZF1:-1.16843258565;XCPE1{core}:-1.18755501646;FOXM1:-1.19254875788;TEAD1:-1.22053596833;TLX1..3_NFIC{dimer}:-1.2721841346;KLF4:-1.29112574924;HMGA1,2:-1.29767219849;NFE2L1:-1.31661789085;POU6F1:-1.41844620681;GFI1B:-1.43232532369;ADNP_IRX_SIX_ZHX:-1.51193971225;UFEwm:-1.54098417412;GATA4:-1.54155195968;RREB1:-1.56235183012;PAX1,9:-1.58260022432;SMAD1..7,9:-1.66411115288;TFCP2:-1.8510795727;NR1H4:-1.85180705908;NR3C1:-2.08120161208;SPZ1:-2.10670731981;NKX3-2:-2.11472380139 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12224-129F1;search_select_hide=table117:FF:12224-129F1 | |||
}} | }} | ||
Latest revision as of 18:35, 4 June 2020
| Name: | CD133+ stem cells - adult bone marrow derived, pool1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12552 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12552
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12552
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.499 |
| 10 | 10 | 0.118 |
| 100 | 100 | 0.741 |
| 101 | 101 | 0.795 |
| 102 | 102 | 0.726 |
| 103 | 103 | 0.626 |
| 104 | 104 | 0.579 |
| 105 | 105 | 0.638 |
| 106 | 106 | 0.23 |
| 107 | 107 | 0.00174 |
| 108 | 108 | 0.124 |
| 109 | 109 | 0.482 |
| 11 | 11 | 0.895 |
| 110 | 110 | 0.932 |
| 111 | 111 | 0.322 |
| 112 | 112 | 0.434 |
| 113 | 113 | 0.8 |
| 114 | 114 | 0.312 |
| 115 | 115 | 0.252 |
| 116 | 116 | 0.594 |
| 117 | 117 | 0.021 |
| 118 | 118 | 0.161 |
| 119 | 119 | 0.0435 |
| 12 | 12 | 0.412 |
| 120 | 120 | 0.643 |
| 121 | 121 | 0.336 |
| 122 | 122 | 0.675 |
| 123 | 123 | 0.341 |
| 124 | 124 | 0.847 |
| 125 | 125 | 0.355 |
| 126 | 126 | 0.292 |
| 127 | 127 | 0.644 |
| 128 | 128 | 0.183 |
| 129 | 129 | 0.0539 |
| 13 | 13 | 0.0666 |
| 130 | 130 | 0.551 |
| 131 | 131 | 0.211 |
| 132 | 132 | 0.0512 |
| 133 | 133 | 0.0721 |
| 134 | 134 | 0.35 |
| 135 | 135 | 0.395 |
| 136 | 136 | 0.039 |
| 137 | 137 | 0.0378 |
| 138 | 138 | 0.401 |
| 139 | 139 | 0.188 |
| 14 | 14 | 0.818 |
| 140 | 140 | 0.0443 |
| 141 | 141 | 0.892 |
| 142 | 142 | 0.792 |
| 143 | 143 | 0.398 |
| 144 | 144 | 0.443 |
| 145 | 145 | 0.389 |
| 146 | 146 | 0.861 |
| 147 | 147 | 0.0269 |
| 148 | 148 | 0.489 |
| 149 | 149 | 0.063 |
| 15 | 15 | 0.8 |
| 150 | 150 | 0.761 |
| 151 | 151 | 0.481 |
| 152 | 152 | 0.51 |
| 153 | 153 | 0.248 |
| 154 | 154 | 0.479 |
| 155 | 155 | 0.0404 |
| 156 | 156 | 0.921 |
| 157 | 157 | 0.0904 |
| 158 | 158 | 0.988 |
| 159 | 159 | 0.113 |
| 16 | 16 | 0.218 |
| 160 | 160 | 0.59 |
| 161 | 161 | 0.969 |
| 162 | 162 | 0.097 |
| 163 | 163 | 0.391 |
| 164 | 164 | 0.291 |
| 165 | 165 | 0.347 |
| 166 | 166 | 0.658 |
| 167 | 167 | 0.615 |
| 168 | 168 | 0.507 |
| 169 | 169 | 0.113 |
| 17 | 17 | 0.176 |
| 18 | 18 | 0.0481 |
| 19 | 19 | 0.105 |
| 2 | 2 | 0.0872 |
| 20 | 20 | 0.18 |
| 21 | 21 | 0.231 |
| 22 | 22 | 0.54 |
| 23 | 23 | 0.00135 |
| 24 | 24 | 0.93 |
| 25 | 25 | 0.287 |
| 26 | 26 | 0.893 |
| 27 | 27 | 0.634 |
| 28 | 28 | 0.703 |
| 29 | 29 | 0.136 |
| 3 | 3 | 0.927 |
| 30 | 30 | 0.146 |
| 31 | 31 | 0.17 |
| 32 | 32 | 0.00577 |
| 33 | 33 | 0.296 |
| 34 | 34 | 0.723 |
| 35 | 35 | 0.753 |
| 36 | 36 | 0.101 |
| 37 | 37 | 0.476 |
| 38 | 38 | 0.374 |
| 39 | 39 | 0.302 |
| 4 | 4 | 0.815 |
| 40 | 40 | 0.289 |
| 41 | 41 | 0.835 |
| 42 | 42 | 0.563 |
| 43 | 43 | 0.23 |
| 44 | 44 | 0.423 |
| 45 | 45 | 0.205 |
| 46 | 46 | 0.359 |
| 47 | 47 | 0.732 |
| 48 | 48 | 0.843 |
| 49 | 49 | 0.371 |
| 5 | 5 | 0.426 |
| 50 | 50 | 0.842 |
| 51 | 51 | 0.628 |
| 52 | 52 | 0.246 |
| 53 | 53 | 0.916 |
| 54 | 54 | 0.208 |
| 55 | 55 | 0.294 |
| 56 | 56 | 0.463 |
| 57 | 57 | 0.472 |
| 58 | 58 | 0.826 |
| 59 | 59 | 0.394 |
| 6 | 6 | 0.996 |
| 60 | 60 | 0.464 |
| 61 | 61 | 0.344 |
| 62 | 62 | 0.783 |
| 63 | 63 | 0.246 |
| 64 | 64 | 0.911 |
| 65 | 65 | 0.042 |
| 66 | 66 | 0.755 |
| 67 | 67 | 0.595 |
| 68 | 68 | 0.884 |
| 69 | 69 | 0.22 |
| 7 | 7 | 0.396 |
| 70 | 70 | 0.00689 |
| 71 | 71 | 0.79 |
| 72 | 72 | 0.617 |
| 73 | 73 | 0.603 |
| 74 | 74 | 0.493 |
| 75 | 75 | 0.0771 |
| 76 | 76 | 0.172 |
| 77 | 77 | 0.0267 |
| 78 | 78 | 0.73 |
| 79 | 79 | 0.183 |
| 8 | 8 | 0.287 |
| 80 | 80 | 0.673 |
| 81 | 81 | 0.64 |
| 82 | 82 | 0.317 |
| 83 | 83 | 0.00263 |
| 84 | 84 | 0.205 |
| 85 | 85 | 0.00818 |
| 86 | 86 | 0.251 |
| 87 | 87 | 0.08 |
| 88 | 88 | 0.449 |
| 89 | 89 | 0.0161 |
| 9 | 9 | 0.613 |
| 90 | 90 | 0.736 |
| 91 | 91 | 0.474 |
| 92 | 92 | 0.0145 |
| 93 | 93 | 0.905 |
| 94 | 94 | 0.71 |
| 95 | 95 | 5.64854e-4 |
| 96 | 96 | 0.75 |
| 97 | 97 | 0.754 |
| 98 | 98 | 0.935 |
| 99 | 99 | 0.00188 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12552
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000020 human CD133-positive progenitor cell- bone marrow derived sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0000037 (hematopoietic stem cell)
0002092 (bone marrow cell)
0001024 (CD34-positive, CD38-negative hematopoietic stem cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002371 (bone marrow)
0001474 (bone element)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000027 (human CD133-positive hematopoeitic stem cell sample)
0000021 (hematopoietic stem cell sample)
0000001 (sample)
0000020 (human CD133-positive progenitor cell- bone marrow derived sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
