FF:12740-135I4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005336 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX008580;DRR009452;DRZ000877;DRZ002262;DRZ012227;DRZ013612 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001135,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0002385,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0004237,UBERON:0004695,UBERON:0002049,UBERON:0010317,UBERON:0002111,UBERON:0007798,UBERON:0001015,UBERON:0004178,UBERON:0002204,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0000383,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002539 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000210,FF:0000101,FF:0000001,FF:0000350,FF:0000344,FF:0000339,FF:0000546 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|donor=biol_rep2 | |||
|expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.94!85.58!SOX17;;chr21:38071430..38071456,+!p1@SIM2!1.85!69.31!SIM2;;chr14:29234581..29234601,+!p2@FOXG1!1.52!31.94!FOXG1;;chr1:170633348..170633399,+!p2@PRRX1!1.47!38.57!PRRX1;;chr12:66218836..66218888,+!p1@HMGA2!1.44!236.86!HMGA2;;chr14:29235961..29236008,+!p1@FOXG1!1.43!25.92!FOXG1;;chr1:170632285..170632309,+!p1@PRRX1!1.40!27.12!PRRX1;;chr12:66218598..66218645,+!p2@HMGA2!1.34!93.42!HMGA2;;chr14:29236269..29236285,+!p3@FOXG1!1.28!18.08!FOXG1;;chr17:1959369..1959388,+!p2@HIC1!1.26!45.20!HIC1;;chr3:141087393..141087426,+!p3@ZBTB38!1.24!64.49!ZBTB38;;chr10:94449703..94449718,+!p1@HHEX!1.21!58.46!HHEX;;chr3:141105705..141105770,+!p4@ZBTB38!1.21!18.68!ZBTB38;;chr11:34642612..34642646,+!p1@EHF!1.15!13.26!EHF;;chr8:11561684..11561751,+!p1@GATA4!1.15!13.26!GATA4;;chr11:46299199..46299233,+!p1@CREB3L1!1.13!64.49!CREB3L1;;chr1:170632959..170632987,+!p4@PRRX1!1.13!13.86!PRRX1;;chr1:170633262..170633285,+!p3@PRRX1!1.12!13.86!PRRX1;;chr12:66218255..66218304,+!p3@HMGA2!1.06!28.33!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!1.05!10.25!HMGA2;;chr2:19558373..19558392,-!p1@OSR1!1.03!27.12!OSR1;;chr12:66357214..66357233,+!p13@HMGA2!1.03!9.64!HMGA2;;chr17:46655704..46655718,-!p2@HOXB4!1.01!13.86!HOXB4;;chr17:46622205..46622218,-!p3@HOXB2!1.01!10.85!HOXB2;;chr17:46621937..46621966,-!p2@HOXB2!0.99!24.11!HOXB2;;chr11:46299539..46299620,+!p2@CREB3L1!0.99!15.07!CREB3L1;;chr19:42636586..42636607,-!p1@POU2F2!0.98!24.11!POU2F2;;chr11:61520075..61520136,+!p1@C11orf9!0.97!18.08!C11orf9;;chr12:66218923..66218934,+!p14@HMGA2!0.97!8.44!HMGA2;;chr1:170633058..170633084,+!p5@PRRX1!0.97!8.44!PRRX1;;chr21:38071403..38071428,+!p2@SIM2!0.95!7.84!SIM2;;chr6:134210243..134210257,+!p1@TCF21!0.92!7.23!TCF21;;chr7:27183291..27183324,-!p1@HOXA5!0.92!7.23!HOXA5;;chr2:239756671..239756732,+!p1@TWIST2!0.90!23.51!TWIST2;;chr12:66218573..66218596,+!p7@HMGA2!0.89!10.25!HMGA2;;chr1:170632439..170632465,+!p11@PRRX1!0.88!6.63!PRRX1;;chr5:72744594..72744609,-!p1@FOXD1!0.87!30.74!FOXD1;;chr17:46622070..46622109,-!p1@HOXB2!0.87!15.07!HOXB2;;chr1:151032860..151032918,+!p1@MLLT11!0.86!78.95!MLLT11;;chr17:41622925..41622976,-!p3@ETV4!0.86!9.64!ETV4;;chr4:81118647..81118666,+!p1@PRDM8!0.86!8.44!PRDM8;;chr16:86544113..86544145,+!p1@FOXF1!0.86!7.84!FOXF1;;chr12:66218212..66218244,+!p5@HMGA2!0.85!9.04!HMGA2;;chr7:35293685..35293718,-!p1@TBX20!0.85!6.03!TBX20;;chr9:16705069..16705086,-!p3@BNC2!0.85!6.03!BNC2;;chr17:1958388..1958404,+!p1@HIC1!0.84!39.78!HIC1;;chr20:42543506..42543549,+!p2@TOX2!0.83!14.46!TOX2;;chr15:83953397..83953425,-!p1@BNC1!0.83!6.63!BNC1;;chr5:72743793..72743855,-!p4@FOXD1!0.82!6.63!FOXD1;;chr15:96869255..96869291,+!p6@NR2F2!0.81!10.25!NR2F2;;chr17:46655672..46655697,-!p3@HOXB4!0.81!5.42!HOXB4;;chr1:170632115..170632136,+!p9@PRRX1!0.81!5.42!PRRX1;;chr5:139492456..139492489,+!p7@PURA!0.81!5.42!PURA;;chr18:53068911..53068935,-!p4@TCF4!0.80!6.03!TCF4;;chr5:72744445..72744466,-!p2@FOXD1!0.79!9.04!FOXD1;;chr6:45296048..45296082,+!p1@RUNX2!0.79!6.03!RUNX2;;chr15:96876966..96877017,+!p12@NR2F2!0.77!7.23!NR2F2;;chr15:96869206..96869220,+!p21@NR2F2!0.77!4.82!NR2F2;;chr17:46659728..46659749,-!p3@HOXB3!0.77!4.82!HOXB3;;chrY:2803415..2803468,+!p1@ZFY!0.77!4.82!ZFY;;chr12:66358080..66358094,+!p15@HMGA2!0.77!4.82!HMGA2;;chr19:9609272..9609297,-!p1@ZNF560!0.77!4.82!ZNF560;;chr21:38071462..38071474,+!p3@SIM2!0.77!4.82!SIM2;;chr2:102091144..102091183,-!p2@RFX8!0.77!4.82!RFX8;;chr3:141087562..141087594,+!p12@ZBTB38!0.77!4.82!ZBTB38;;chr1:37940170..37940190,+!p1@ZC3H12A!0.74!61.47!ZC3H12A;;chr11:128563948..128564003,+!p1@FLI1!0.74!60.27!FLI1;;chr20:42543441..42543497,+!p1@TOX2!0.74!22.30!TOX2;;chr6:106534192..106534224,+!p1@PRDM1!0.74!13.86!PRDM1;;chr3:157823517..157823562,-!p1@SHOX2!0.74!4.82!SHOX2;;chr6:34204921..34204939,+!p3@HMGA1!0.73!148.87!HMGA1;;chr2:66662249..66662267,+!p2@MEIS1!0.73!18.68!MEIS1;;chr1:221052776..221052799,+!p1@HLX!0.73!8.44!HLX;;chr17:46688334..46688385,-!p1@HOXB7!0.73!6.63!HOXB7;;chr14:62162258..62162269,+!p2@HIF1A!0.72!45.80!HIF1A;;chr11:46333934..46333963,+!p5@CREB3L1!0.72!4.22!CREB3L1;;chr1:170632250..170632277,+!p7@PRRX1!0.72!4.22!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!0.72!4.22!PRRX1;;chr16:30406423..30406447,+!p4@ZNF48!0.72!4.22!ZNF48;;chr17:41622765..41622821,-!p2@ETV4!0.71!6.63!ETV4;;chr17:3571863..3571881,-!p1@TAX1BP3!0.70!326.66!TAX1BP3;;chr6:21597765..21597779,+!p2@SOX4!0.70!36.76!SOX4;;chr7:26191809..26191890,+!p1@NFE2L3!0.70!22.30!NFE2L3;;chr11:65687362..65687436,+!p3@DRAP1!0.70!20.49!DRAP1;;chr8:49833948..49833973,-!p2@SNAI2!0.69!28.33!SNAI2;;chr2:46612334..46612349,+!p6@EPAS1!0.69!5.42!EPAS1;;chr9:35732647..35732678,+!p2@CREB3!0.68!24.11!CREB3;;chr6:1312325..1312340,+!p1@FOXQ1!0.68!6.63!FOXQ1;;chr5:72744562..72744573,-!p3@FOXD1!0.68!4.82!FOXD1;;chr6:21597514..21597578,+!p4@SOX4!0.67!6.63!SOX4;;chr12:66218378..66218401,+!p6@HMGA2!0.67!6.03!HMGA2;;chr1:158979792..158979814,+!p2@IFI16!0.66!39.18!IFI16;;chr2:66662281..66662308,+!p1@MEIS1!0.66!13.86!MEIS1;;chr18:3450293..3450304,+!p4@TGIF1!0.66!9.64!TGIF1;;chr2:239756739..239756755,+!p2@TWIST2!0.66!6.63!TWIST2;;chr17:46675420..46675465,-!p3@HOXB6!0.66!4.22!HOXB6;;chr17:41622731..41622764,-!p5@ETV4!0.66!3.62!ETV4;;chr17:46675558..46675577,-!p2@HOXB6!0.66!3.62!HOXB6;;chr1:170632028..170632043,+!p20@PRRX1!0.66!3.62!PRRX1;;chr7:27170042..27170064,-!p4@HOXA4!0.66!3.62!HOXA4;;chr7:27183263..27183284,-!p2@HOXA5!0.66!3.62!HOXA5;;chr8:55370720..55370733,+!p2@SOX17!0.66!3.62!SOX17;;chr14:29236169..29236216,+!p6@FOXG1!0.66!3.62!FOXG1;;chr1:221052840..221052875,+!p4@HLX!0.65!4.22!HLX;;chr7:44143925..44143970,+!p1@AEBP1!0.64!88.60!AEBP1;;chr10:63809106..63809127,+!p1@ARID5B!0.64!53.04!ARID5B;;chr10:94449675..94449694,+!p2@HHEX!0.64!10.25!HHEX;;chr15:57511609..57511651,+!p2@TCF12!0.63!6.03!TCF12;;chr19:31840130..31840160,-!p2@TSHZ3!0.63!5.42!TSHZ3;;chr14:62203749..62203798,+!p5@HIF1A!0.63!5.42!HIF1A;;chr12:53856284..53856299,+!p3@PCBP2!0.62!10.25!PCBP2;;chr11:65686802..65686818,+!p6@DRAP1!0.62!6.03!DRAP1;;chr7:19157248..19157268,-!p1@TWIST1!0.61!9.64!TWIST1;;chr15:96874244..96874259,+!p5@NR2F2!0.61!8.44!NR2F2;;chr19:56152332..56152347,+!p4@ZNF580!0.61!7.84!ZNF580;;chr11:65687158..65687216,+!p4@DRAP1!0.60!20.49!DRAP1;;chr6:34205372..34205412,+!p5@HMGA1!0.60!18.08!HMGA1;;chr7:137564372..137564394,-!p7@CREB3L2!0.60!5.42!CREB3L2;;chr12:125002739..125002756,-!p6@NCOR2!0.60!4.82!NCOR2;;chr15:96869222..96869251,+!p18@NR2F2!0.60!3.62!NR2F2;;chr16:86612320..86612394,+!p1@FOXL1!0.60!3.01!FOXL1;;chr17:46621146..46621180,-!p10@HOXB2!0.60!3.01!HOXB2;;chr17:46622175..46622186,-!p12@HOXB2!0.60!3.01!HOXB2;;chr17:46682321..46682362,-!p1@HOXB6!0.60!3.01!HOXB6;;chr7:27142290..27142310,-!p1@HOXA2!0.60!3.01!HOXA2;;chr7:27153454..27153469,-!p2@HOXA3!0.60!3.01!HOXA3;;chr8:55370884..55370896,+!p5@SOX17!0.60!3.01!SOX17;;chr1:170632137..170632172,+!p10@PRRX1!0.60!3.01!PRRX1;;chr1:170632867..170632878,+!p21@PRRX1!0.60!3.01!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.60!3.01!PRRX1;;chrY:21906594..21906622,-!p1@KDM5D!0.60!3.01!KDM5D;;chr11:46332679..46332695,+!p12@CREB3L1!0.60!3.01!CREB3L1;;chr2:102091566..102091581,-!p1@RFX8!0.60!3.01!RFX8;;chr2:66666432..66666462,+!p7@MEIS1!0.60!3.01!MEIS1;;chr3:178789522..178789564,-!p2@ZMAT3!0.59!25.92!ZMAT3;;chr15:96874216..96874236,+!p13@NR2F2!0.59!4.82!NR2F2;;chr17:46622114..46622138,-!p4@HOXB2!0.59!4.82!HOXB2;;chr15:96869114..96869160,+!p11@NR2F2!0.59!4.22!NR2F2;;chr1:221053049..221053075,+!p3@HLX!0.58!5.42!HLX;;chr20:50721803..50721857,-!p2@ZFP64!0.58!4.82!ZFP64;;chr12:125002827..125002855,-!p5@NCOR2!0.57!4.22!NCOR2;;chr14:62162285..62162296,+!p3@HIF1A!0.56!16.88!HIF1A;;chr1:151032922..151032951,+!p2@MLLT11!0.56!4.82!MLLT11;;chr17:41623692..41623715,-!p1@ETV4!0.55!13.26!ETV4;;chrX:66763815..66763854,+!p2@AR!0.55!3.62!AR;;chr2:101591314..101591333,+!p2@NPAS2!0.55!3.01!NPAS2;;chr15:96874145..96874166,+!p7@NR2F2!0.54!5.42!NR2F2;;chr12:66218183..66218209,+!p4@HMGA2!0.54!5.42!HMGA2;;chr13:73636252..73636307,+!p2@KLF5!0.54!3.01!KLF5;;chr17:46622229..46622257,-!p6@HOXB2!0.54!3.01!HOXB2;;chr8:49833978..49833996,-!p1@SNAI2!0.53!63.28!SNAI2;;chr14:73360799..73360817,-!p1@DPF3!0.53!10.25!DPF3;;chr17:41322208..41322250,-!p3@BRCA1!0.53!8.44!BRCA1;;chr7:19157043..19157088,-!p2@TWIST1!0.53!7.23!TWIST1;;chr7:27788205..27788255,+!p2@TAX1BP1!0.53!4.22!TAX1BP1;;chr12:80085061..80085119,-!p6@PAWR!0.53!4.22!PAWR;;chr11:65686776..65686787,+!p9@DRAP1!0.53!3.01!DRAP1;;chr2:60778035..60778060,-!p4@BCL11A!0.53!3.01!BCL11A;;chr2:119604456..119604501,-!p2@EN1!0.53!2.41!EN1;;chr7:1577899..1577943,+!p3@MAFK!0.53!2.41!MAFK;;chr7:27170359..27170381,-!p1@HOXA4!0.53!2.41!HOXA4;;chr1:170632310..170632321,+!p15@PRRX1!0.53!2.41!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.53!2.41!PRRX1;;chr1:170632647..170632659,+!p17@PRRX1!0.53!2.41!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.53!2.41!PRRX1;;chr1:170633225..170633230,+!p25@PRRX1!0.53!2.41!PRRX1;;chr1:221053444..221053473,+!p8@HLX!0.53!2.41!HLX;;chr1:44513995..44514031,+!p1@KLF17!0.53!2.41!KLF17;;chr11:125034640..125034655,+!p1@PKNOX2!0.53!2.41!PKNOX2;;chr11:46333979..46333991,+!p7@CREB3L1!0.53!2.41!CREB3L1;;chr12:54394309..54394336,+!p2@HOXC9!0.53!2.41!HOXC9;;chr16:31076332..31076388,-!p3@ZNF668!0.53!2.41!ZNF668;;chr17:46691732..46691766,-!p4@HOXB8!0.53!2.41!HOXB8;;chr19:31840168..31840186,-!p6@TSHZ3!0.53!2.41!TSHZ3;;chr11:65686732..65686756,+!p2@DRAP1!0.52!12.05!DRAP1;;chr3:71007344..71007348,-!p6@FOXP1!0.52!11.45!FOXP1;;chr5:321810..321877,+!p1@AHRR!0.52!9.04!AHRR;;chr1:151032782..151032801,+!p4@MLLT11!0.52!5.42!MLLT11;;chr12:26277929..26277955,-!p3@BHLHE41!0.52!3.62!BHLHE41;;chr14:35872926..35872951,-!p4@NFKBIA!0.52!3.62!NFKBIA;;chr9:35732514..35732530,+!p5@CREB3!0.52!3.62!CREB3;;chr2:238536207..238536290,+!p2@LRRFIP1!0.51!28.33!LRRFIP1;;chr10:35484804..35484902,+!p2@CREM!0.51!10.85!CREM;;chr12:96588368..96588394,+!p3@ELK3!0.51!7.23!ELK3;;chr14:62203595..62203676,+!p4@HIF1A!0.51!4.82!HIF1A;;chr2:121493492..121493537,+!p2@GLI2!0.51!4.22!GLI2;;chr3:168864315..168864339,-!p2@MECOM!0.51!4.22!M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| |expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.94!85.58!SOX17;;chr21:38071430..38071456,+!p1@SIM2!1.85!69.31!SIM2;;chr14:29234581..29234601,+!p2@FOXG1!1.52!31.94!FOXG1;;chr1:170633348..170633399,+!p2@PRRX1!1.47!38.57!PRRX1;;chr12:66218836..66218888,+!p1@HMGA2!1.44!236.86!HMGA2;;chr14:29235961..29236008,+!p1@FOXG1!1.43!25.92!FOXG1;;chr1:170632285..170632309,+!p1@PRRX1!1.40!27.12!PRRX1;;chr12:66218598..66218645,+!p2@HMGA2!1.34!93.42!HMGA2;;chr14:29236269..29236285,+!p3@FOXG1!1.28!18.08!FOXG1;;chr17:1959369..1959388,+!p2@HIC1!1.26!45.20!HIC1;;chr3:141087393..141087426,+!p3@ZBTB38!1.24!64.49!ZBTB38;;chr10:94449703..94449718,+!p1@HHEX!1.21!58.46!HHEX;;chr3:141105705..141105770,+!p4@ZBTB38!1.21!18.68!ZBTB38;;chr11:34642612..34642646,+!p1@EHF!1.15!13.26!EHF;;chr8:11561684..11561751,+!p1@GATA4!1.15!13.26!GATA4;;chr11:46299199..46299233,+!p1@CREB3L1!1.13!64.49!CREB3L1;;chr1:170632959..170632987,+!p4@PRRX1!1.13!13.86!PRRX1;;chr1:170633262..170633285,+!p3@PRRX1!1.12!13.86!PRRX1;;chr12:66218255..66218304,+!p3@HMGA2!1.06!28.33!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!1.05!10.25!HMGA2;;chr2:19558373..19558392,-!p1@OSR1!1.03!27.12!OSR1;;chr12:66357214..66357233,+!p13@HMGA2!1.03!9.64!HMGA2;;chr17:46655704..46655718,-!p2@HOXB4!1.01!13.86!HOXB4;;chr17:46622205..46622218,-!p3@HOXB2!1.01!10.85!HOXB2;;chr17:46621937..46621966,-!p2@HOXB2!0.99!24.11!HOXB2;;chr11:46299539..46299620,+!p2@CREB3L1!0.99!15.07!CREB3L1;;chr19:42636586..42636607,-!p1@POU2F2!0.98!24.11!POU2F2;;chr11:61520075..61520136,+!p1@C11orf9!0.97!18.08!C11orf9;;chr12:66218923..66218934,+!p14@HMGA2!0.97!8.44!HMGA2;;chr1:170633058..170633084,+!p5@PRRX1!0.97!8.44!PRRX1;;chr21:38071403..38071428,+!p2@SIM2!0.95!7.84!SIM2;;chr6:134210243..134210257,+!p1@TCF21!0.92!7.23!TCF21;;chr7:27183291..27183324,-!p1@HOXA5!0.92!7.23!HOXA5;;chr2:239756671..239756732,+!p1@TWIST2!0.90!23.51!TWIST2;;chr12:66218573..66218596,+!p7@HMGA2!0.89!10.25!HMGA2;;chr1:170632439..170632465,+!p11@PRRX1!0.88!6.63!PRRX1;;chr5:72744594..72744609,-!p1@FOXD1!0.87!30.74!FOXD1;;chr17:46622070..46622109,-!p1@HOXB2!0.87!15.07!HOXB2;;chr1:151032860..151032918,+!p1@MLLT11!0.86!78.95!MLLT11;;chr17:41622925..41622976,-!p3@ETV4!0.86!9.64!ETV4;;chr4:81118647..81118666,+!p1@PRDM8!0.86!8.44!PRDM8;;chr16:86544113..86544145,+!p1@FOXF1!0.86!7.84!FOXF1;;chr12:66218212..66218244,+!p5@HMGA2!0.85!9.04!HMGA2;;chr7:35293685..35293718,-!p1@TBX20!0.85!6.03!TBX20;;chr9:16705069..16705086,-!p3@BNC2!0.85!6.03!BNC2;;chr17:1958388..1958404,+!p1@HIC1!0.84!39.78!HIC1;;chr20:42543506..42543549,+!p2@TOX2!0.83!14.46!TOX2;;chr15:83953397..83953425,-!p1@BNC1!0.83!6.63!BNC1;;chr5:72743793..72743855,-!p4@FOXD1!0.82!6.63!FOXD1;;chr15:96869255..96869291,+!p6@NR2F2!0.81!10.25!NR2F2;;chr17:46655672..46655697,-!p3@HOXB4!0.81!5.42!HOXB4;;chr1:170632115..170632136,+!p9@PRRX1!0.81!5.42!PRRX1;;chr5:139492456..139492489,+!p7@PURA!0.81!5.42!PURA;;chr18:53068911..53068935,-!p4@TCF4!0.80!6.03!TCF4;;chr5:72744445..72744466,-!p2@FOXD1!0.79!9.04!FOXD1;;chr6:45296048..45296082,+!p1@RUNX2!0.79!6.03!RUNX2;;chr15:96876966..96877017,+!p12@NR2F2!0.77!7.23!NR2F2;;chr15:96869206..96869220,+!p21@NR2F2!0.77!4.82!NR2F2;;chr17:46659728..46659749,-!p3@HOXB3!0.77!4.82!HOXB3;;chrY:2803415..2803468,+!p1@ZFY!0.77!4.82!ZFY;;chr12:66358080..66358094,+!p15@HMGA2!0.77!4.82!HMGA2;;chr19:9609272..9609297,-!p1@ZNF560!0.77!4.82!ZNF560;;chr21:38071462..38071474,+!p3@SIM2!0.77!4.82!SIM2;;chr2:102091144..102091183,-!p2@RFX8!0.77!4.82!RFX8;;chr3:141087562..141087594,+!p12@ZBTB38!0.77!4.82!ZBTB38;;chr1:37940170..37940190,+!p1@ZC3H12A!0.74!61.47!ZC3H12A;;chr11:128563948..128564003,+!p1@FLI1!0.74!60.27!FLI1;;chr20:42543441..42543497,+!p1@TOX2!0.74!22.30!TOX2;;chr6:106534192..106534224,+!p1@PRDM1!0.74!13.86!PRDM1;;chr3:157823517..157823562,-!p1@SHOX2!0.74!4.82!SHOX2;;chr6:34204921..34204939,+!p3@HMGA1!0.73!148.87!HMGA1;;chr2:66662249..66662267,+!p2@MEIS1!0.73!18.68!MEIS1;;chr1:221052776..221052799,+!p1@HLX!0.73!8.44!HLX;;chr17:46688334..46688385,-!p1@HOXB7!0.73!6.63!HOXB7;;chr14:62162258..62162269,+!p2@HIF1A!0.72!45.80!HIF1A;;chr11:46333934..46333963,+!p5@CREB3L1!0.72!4.22!CREB3L1;;chr1:170632250..170632277,+!p7@PRRX1!0.72!4.22!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!0.72!4.22!PRRX1;;chr16:30406423..30406447,+!p4@ZNF48!0.72!4.22!ZNF48;;chr17:41622765..41622821,-!p2@ETV4!0.71!6.63!ETV4;;chr17:3571863..3571881,-!p1@TAX1BP3!0.70!326.66!TAX1BP3;;chr6:21597765..21597779,+!p2@SOX4!0.70!36.76!SOX4;;chr7:26191809..26191890,+!p1@NFE2L3!0.70!22.30!NFE2L3;;chr11:65687362..65687436,+!p3@DRAP1!0.70!20.49!DRAP1;;chr8:49833948..49833973,-!p2@SNAI2!0.69!28.33!SNAI2;;chr2:46612334..46612349,+!p6@EPAS1!0.69!5.42!EPAS1;;chr9:35732647..35732678,+!p2@CREB3!0.68!24.11!CREB3;;chr6:1312325..1312340,+!p1@FOXQ1!0.68!6.63!FOXQ1;;chr5:72744562..72744573,-!p3@FOXD1!0.68!4.82!FOXD1;;chr6:21597514..21597578,+!p4@SOX4!0.67!6.63!SOX4;;chr12:66218378..66218401,+!p6@HMGA2!0.67!6.03!HMGA2;;chr1:158979792..158979814,+!p2@IFI16!0.66!39.18!IFI16;;chr2:66662281..66662308,+!p1@MEIS1!0.66!13.86!MEIS1;;chr18:3450293..3450304,+!p4@TGIF1!0.66!9.64!TGIF1;;chr2:239756739..239756755,+!p2@TWIST2!0.66!6.63!TWIST2;;chr17:46675420..46675465,-!p3@HOXB6!0.66!4.22!HOXB6;;chr17:41622731..41622764,-!p5@ETV4!0.66!3.62!ETV4;;chr17:46675558..46675577,-!p2@HOXB6!0.66!3.62!HOXB6;;chr1:170632028..170632043,+!p20@PRRX1!0.66!3.62!PRRX1;;chr7:27170042..27170064,-!p4@HOXA4!0.66!3.62!HOXA4;;chr7:27183263..27183284,-!p2@HOXA5!0.66!3.62!HOXA5;;chr8:55370720..55370733,+!p2@SOX17!0.66!3.62!SOX17;;chr14:29236169..29236216,+!p6@FOXG1!0.66!3.62!FOXG1;;chr1:221052840..221052875,+!p4@HLX!0.65!4.22!HLX;;chr7:44143925..44143970,+!p1@AEBP1!0.64!88.60!AEBP1;;chr10:63809106..63809127,+!p1@ARID5B!0.64!53.04!ARID5B;;chr10:94449675..94449694,+!p2@HHEX!0.64!10.25!HHEX;;chr15:57511609..57511651,+!p2@TCF12!0.63!6.03!TCF12;;chr19:31840130..31840160,-!p2@TSHZ3!0.63!5.42!TSHZ3;;chr14:62203749..62203798,+!p5@HIF1A!0.63!5.42!HIF1A;;chr12:53856284..53856299,+!p3@PCBP2!0.62!10.25!PCBP2;;chr11:65686802..65686818,+!p6@DRAP1!0.62!6.03!DRAP1;;chr7:19157248..19157268,-!p1@TWIST1!0.61!9.64!TWIST1;;chr15:96874244..96874259,+!p5@NR2F2!0.61!8.44!NR2F2;;chr19:56152332..56152347,+!p4@ZNF580!0.61!7.84!ZNF580;;chr11:65687158..65687216,+!p4@DRAP1!0.60!20.49!DRAP1;;chr6:34205372..34205412,+!p5@HMGA1!0.60!18.08!HMGA1;;chr7:137564372..137564394,-!p7@CREB3L2!0.60!5.42!CREB3L2;;chr12:125002739..125002756,-!p6@NCOR2!0.60!4.82!NCOR2;;chr15:96869222..96869251,+!p18@NR2F2!0.60!3.62!NR2F2;;chr16:86612320..86612394,+!p1@FOXL1!0.60!3.01!FOXL1;;chr17:46621146..46621180,-!p10@HOXB2!0.60!3.01!HOXB2;;chr17:46622175..46622186,-!p12@HOXB2!0.60!3.01!HOXB2;;chr17:46682321..46682362,-!p1@HOXB6!0.60!3.01!HOXB6;;chr7:27142290..27142310,-!p1@HOXA2!0.60!3.01!HOXA2;;chr7:27153454..27153469,-!p2@HOXA3!0.60!3.01!HOXA3;;chr8:55370884..55370896,+!p5@SOX17!0.60!3.01!SOX17;;chr1:170632137..170632172,+!p10@PRRX1!0.60!3.01!PRRX1;;chr1:170632867..170632878,+!p21@PRRX1!0.60!3.01!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.60!3.01!PRRX1;;chrY:21906594..21906622,-!p1@KDM5D!0.60!3.01!KDM5D;;chr11:46332679..46332695,+!p12@CREB3L1!0.60!3.01!CREB3L1;;chr2:102091566..102091581,-!p1@RFX8!0.60!3.01!RFX8;;chr2:66666432..66666462,+!p7@MEIS1!0.60!3.01!MEIS1;;chr3:178789522..178789564,-!p2@ZMAT3!0.59!25.92!ZMAT3;;chr15:96874216..96874236,+!p13@NR2F2!0.59!4.82!NR2F2;;chr17:46622114..46622138,-!p4@HOXB2!0.59!4.82!HOXB2;;chr15:96869114..96869160,+!p11@NR2F2!0.59!4.22!NR2F2;;chr1:221053049..221053075,+!p3@HLX!0.58!5.42!HLX;;chr20:50721803..50721857,-!p2@ZFP64!0.58!4.82!ZFP64;;chr12:125002827..125002855,-!p5@NCOR2!0.57!4.22!NCOR2;;chr14:62162285..62162296,+!p3@HIF1A!0.56!16.88!HIF1A;;chr1:151032922..151032951,+!p2@MLLT11!0.56!4.82!MLLT11;;chr17:41623692..41623715,-!p1@ETV4!0.55!13.26!ETV4;;chrX:66763815..66763854,+!p2@AR!0.55!3.62!AR;;chr2:101591314..101591333,+!p2@NPAS2!0.55!3.01!NPAS2;;chr15:96874145..96874166,+!p7@NR2F2!0.54!5.42!NR2F2;;chr12:66218183..66218209,+!p4@HMGA2!0.54!5.42!HMGA2;;chr13:73636252..73636307,+!p2@KLF5!0.54!3.01!KLF5;;chr17:46622229..46622257,-!p6@HOXB2!0.54!3.01!HOXB2;;chr8:49833978..49833996,-!p1@SNAI2!0.53!63.28!SNAI2;;chr14:73360799..73360817,-!p1@DPF3!0.53!10.25!DPF3;;chr17:41322208..41322250,-!p3@BRCA1!0.53!8.44!BRCA1;;chr7:19157043..19157088,-!p2@TWIST1!0.53!7.23!TWIST1;;chr7:27788205..27788255,+!p2@TAX1BP1!0.53!4.22!TAX1BP1;;chr12:80085061..80085119,-!p6@PAWR!0.53!4.22!PAWR;;chr11:65686776..65686787,+!p9@DRAP1!0.53!3.01!DRAP1;;chr2:60778035..60778060,-!p4@BCL11A!0.53!3.01!BCL11A;;chr2:119604456..119604501,-!p2@EN1!0.53!2.41!EN1;;chr7:1577899..1577943,+!p3@MAFK!0.53!2.41!MAFK;;chr7:27170359..27170381,-!p1@HOXA4!0.53!2.41!HOXA4;;chr1:170632310..170632321,+!p15@PRRX1!0.53!2.41!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.53!2.41!PRRX1;;chr1:170632647..170632659,+!p17@PRRX1!0.53!2.41!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.53!2.41!PRRX1;;chr1:170633225..170633230,+!p25@PRRX1!0.53!2.41!PRRX1;;chr1:221053444..221053473,+!p8@HLX!0.53!2.41!HLX;;chr1:44513995..44514031,+!p1@KLF17!0.53!2.41!KLF17;;chr11:125034640..125034655,+!p1@PKNOX2!0.53!2.41!PKNOX2;;chr11:46333979..46333991,+!p7@CREB3L1!0.53!2.41!CREB3L1;;chr12:54394309..54394336,+!p2@HOXC9!0.53!2.41!HOXC9;;chr16:31076332..31076388,-!p3@ZNF668!0.53!2.41!ZNF668;;chr17:46691732..46691766,-!p4@HOXB8!0.53!2.41!HOXB8;;chr19:31840168..31840186,-!p6@TSHZ3!0.53!2.41!TSHZ3;;chr11:65686732..65686756,+!p2@DRAP1!0.52!12.05!DRAP1;;chr3:71007344..71007348,-!p6@FOXP1!0.52!11.45!FOXP1;;chr5:321810..321877,+!p1@AHRR!0.52!9.04!AHRR;;chr1:151032782..151032801,+!p4@MLLT11!0.52!5.42!MLLT11;;chr12:26277929..26277955,-!p3@BHLHE41!0.52!3.62!BHLHE41;;chr14:35872926..35872951,-!p4@NFKBIA!0.52!3.62!NFKBIA;;chr9:35732514..35732530,+!p5@CREB3!0.52!3.62!CREB3;;chr2:238536207..238536290,+!p2@LRRFIP1!0.51!28.33!LRRFIP1;;chr10:35484804..35484902,+!p2@CREM!0.51!10.85!CREM;;chr12:96588368..96588394,+!p3@ELK3!0.51!7.23!ELK3;;chr14:62203595..62203676,+!p4@HIF1A!0.51!4.82!HIF1A;;chr2:121493492..121493537,+!p2@GLI2!0.51!4.22!GLI2;;chr3:168864315..168864339,-!p2@MECOM!0.51!4.22!M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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002539;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000947;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001135;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004573;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798 | |||
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 36: | Line 43: | ||
|fonse_treatment_closure=EFO:0000369,FF:0000339,FF:0000546,FF:12740-135I4 | |fonse_treatment_closure=EFO:0000369,FF:0000339,FF:0000546,FF:12740-135I4 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Aortic%2520smooth%2520muscle%2520cell%2520response%2520to%2520FGF2%252c%252000hr00min%252c%2520biol_rep2%2520%2528LK2%2529.CNhs13358.12740-135I4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Aortic%2520smooth%2520muscle%2520cell%2520response%2520to%2520FGF2%252c%252000hr00min%252c%2520biol_rep2%2520%2528LK2%2529.CNhs13358.12740-135I4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Aortic%2520smooth%2520muscle%2520cell%2520response%2520to%2520FGF2%252c%252000hr00min%252c%2520biol_rep2%2520%2528LK2%2529.CNhs13358.12740-135I4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Aortic%2520smooth%2520muscle%2520cell%2520response%2520to%2520FGF2%252c%252000hr00min%252c%2520biol_rep2%2520%2528LK2%2529.CNhs13358.12740-135I4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Aortic%2520smooth%2520muscle%2520cell%2520response%2520to%2520FGF2%252c%252000hr00min%252c%2520biol_rep2%2520%2528LK2%2529.CNhs13358.12740-135I4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12740-135I4 | |id=FF:12740-135I4 | ||
|is_a=EFO:0002091;;FF:0000546 | |is_a=EFO:0002091;;FF:0000546 | ||
|is_obsolete= | |is_obsolete= | ||
|name=Aortic smooth muscle cell response to FGF2 | |library_id=CNhs13358 | ||
|library_id_phase_based=2:CNhs13358 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12740 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12740 | |||
|name=Aortic smooth muscle cell response to FGF2 | |||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
|part_of= | |part_of= | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13358,LSID1022,release013,COMPLETED | |profile_hcage=CNhs13358,LSID1022,release013,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=135 | |rna_box=135 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 59: | Line 80: | ||
|rna_weight_ug=4.01 | |rna_weight_ug=4.01 | ||
|sample_age= | |sample_age= | ||
|sample_category=time courses | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 78: | Line 100: | ||
|sample_strain= | |sample_strain= | ||
|sample_tissue=aorta | |sample_tissue=aorta | ||
|time= 00hr00min | |||
|timecourse=AoSMC_response_to_FGF2 | |||
|top_motifs=ALX4:2.44649173195;NKX3-1:1.93166548011;NKX2-2,8:1.78780914258;UFEwm:1.64412787195;GCM1,2:1.44835697907;FOXL1:1.35444619776;TP53:1.33375881818;ALX1:1.27575584607;ONECUT1,2:1.24897387466;NFE2L1:1.23846407354;EVI1:1.13445391152;ZNF238:1.12014529483;ZBTB6:1.10521953668;NKX3-2:1.10112217827;XBP1:1.0872415054;TEF:1.0390037742;POU1F1:0.996843077917;PAX4:0.951948254909;SRF:0.947982927138;PAX1,9:0.947264625064;CDC5L:0.908896892195;HOX{A5,B5}:0.908074572404;AIRE:0.810504725621;KLF4:0.795649106406;ZIC1..3:0.795206638599;HSF1,2:0.789315280345;TAL1_TCF{3,4,12}:0.768257027725;HMGA1,2:0.761896379182;TLX1..3_NFIC{dimer}:0.700824339507;POU6F1:0.676664011677;RXR{A,B,G}:0.663510286359;HOX{A4,D4}:0.644274185951;MYBL2:0.632924101305;EN1,2:0.629992474602;NFATC1..3:0.629181593329;PPARG:0.620374648816;NANOG{mouse}:0.616912117282;PAX8:0.609370994001;POU3F1..4:0.607270476217;GATA4:0.600855235733;GZF1:0.593630059376;TEAD1:0.562013419765;TBP:0.521992691882;NFE2L2:0.518563366339;TFAP4:0.513314272756;ZNF384:0.51279206319;FOXM1:0.501877760224;GLI1..3:0.490368016374;EBF1:0.473795257525;HMX1:0.46608203057;NKX6-1,2:0.421404191579;HIF1A:0.39849257665;ATF6:0.39749527275;FOXD3:0.385448373685;FOX{I1,J2}:0.363201152965;BACH2:0.338808470033;CDX1,2,4:0.2888259724;bHLH_family:0.284095411663;LHX3,4:0.254094953882;NR3C1:0.244691947733;ZBTB16:0.240589424291;TLX2:0.239631074477;DBP:0.234612395956;HES1:0.230232743746;TFCP2:0.229713396282;PAX5:0.226950072329;FOXP3:0.217303836292;SOX2:0.21704842881;BPTF:0.214931156785;MZF1:0.20480751788;NFIX:0.192324482183;JUN:0.192292955912;IKZF1:0.168646773278;SOX17:0.167418856543;GTF2I:0.161051294968;PRDM1:0.158002473289;GTF2A1,2:0.157353940965;TBX4,5:0.142917305484;FOS_FOS{B,L1}_JUN{B,D}:0.119450168436;REST:0.110887595197;FOXQ1:0.11008364153;GFI1B:0.108448845592;HLF:0.0898071455433;IKZF2:0.0710846767837;CRX:0.0562801855551;HBP1_HMGB_SSRP1_UBTF:0.0401855795481;HOXA9_MEIS1:0.0142450151026;SOX5:0.0123445904221;NFKB1_REL_RELA:0.00755049752127;LEF1_TCF7_TCF7L1,2:0.00240695221678;MAFB:-0.00623533781646;FOSL2:-0.0100110335681;PAX6:-0.0338261659164;SPZ1:-0.0649959198531;MTE{core}:-0.0703704122096;HAND1,2:-0.0740397008144;AHR_ARNT_ARNT2:-0.088012099164;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.090344576066;HNF1A:-0.11763858065;RUNX1..3:-0.119245935432;PATZ1:-0.184713362822;TFAP2{A,C}:-0.200149973775;PITX1..3:-0.206650924389;MYB:-0.209204606539;NKX2-1,4:-0.214957367823;MEF2{A,B,C,D}:-0.217122006082;YY1:-0.225018971627;NFE2:-0.235021170413;MYFfamily:-0.237597719176;ELK1,4_GABP{A,B1}:-0.24385941743;ELF1,2,4:-0.24639900841;STAT5{A,B}:-0.271305315742;SMAD1..7,9:-0.274516461468;TOPORS:-0.281221387175;ESR1:-0.287330130394;STAT2,4,6:-0.297911059857;MED-1{core}:-0.298598284974;ADNP_IRX_SIX_ZHX:-0.300605393113;SOX{8,9,10}:-0.300761237716;FOX{D1,D2}:-0.301658778535;AR:-0.302977852724;ETS1,2:-0.306036690584;NFIL3:-0.312588321306;ARID5B:-0.321678575739;SPI1:-0.326050894289;RREB1:-0.326762225993;MAZ:-0.351009159308;OCT4_SOX2{dimer}:-0.353155539779;RFX1:-0.362876158397;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.368608841053;TFAP2B:-0.381729308679;POU5F1:-0.386146145599;HNF4A_NR2F1,2:-0.402629972554;CEBPA,B_DDIT3:-0.404520884196;DMAP1_NCOR{1,2}_SMARC:-0.415236271069;RXRA_VDR{dimer}:-0.421490499276;PRRX1,2:-0.431496674493;HIC1:-0.440126272346;POU2F1..3:-0.449216695339;NR6A1:-0.468607003628;NRF1:-0.475366774488;ZNF143:-0.475526804386;NR1H4:-0.490405591192;ZFP161:-0.502332144734;NHLH1,2:-0.502441306928;PAX2:-0.517929149217;SPIB:-0.518935022956;MTF1:-0.520845242541;ESRRA:-0.544992787671;SNAI1..3:-0.558762582073;ATF5_CREB3:-0.558810946679;IRF1,2:-0.568058294491;TGIF1:-0.574926944032;ZNF148:-0.585275274105;HOX{A6,A7,B6,B7}:-0.601935974538;LMO2:-0.618713480137;ZEB1:-0.638494317078;E2F1..5:-0.657105095741;GFI1:-0.66155048654;XCPE1{core}:-0.673719809009;FOXP1:-0.677700796338;RFX2..5_RFXANK_RFXAP:-0.699415694171;T:-0.701613775369;FOXO1,3,4:-0.711780944919;ZNF423:-0.745995696146;GATA6:-0.758106860094;CUX2:-0.763642658218;CREB1:-0.782113995182;IRF7:-0.824977059906;NKX2-3_NKX2-5:-0.84724561134;SREBF1,2:-0.850559602711;ATF2:-0.850646683573;VSX1,2:-0.861989242716;TFDP1:-0.865058800869;EGR1..3:-0.872074022411;MYOD1:-0.876479859956;PBX1:-0.915241941346;FOX{F1,F2,J1}:-0.924540199271;STAT1,3:-0.926761714852;SP1:-0.957309366703;FOXN1:-0.973457034106;NR5A1,2:-1.0030881702;ATF4:-1.00609105649;PDX1:-1.03407429451;FOXA2:-1.07918920484;RBPJ:-1.10570485406;PAX3,7:-1.16775709443;NFY{A,B,C}:-1.22755076639;BREu{core}:-1.25590848879;NANOG:-1.29102775175;EP300:-1.38166149709;RORA:-1.46528356053 | |top_motifs=ALX4:2.44649173195;NKX3-1:1.93166548011;NKX2-2,8:1.78780914258;UFEwm:1.64412787195;GCM1,2:1.44835697907;FOXL1:1.35444619776;TP53:1.33375881818;ALX1:1.27575584607;ONECUT1,2:1.24897387466;NFE2L1:1.23846407354;EVI1:1.13445391152;ZNF238:1.12014529483;ZBTB6:1.10521953668;NKX3-2:1.10112217827;XBP1:1.0872415054;TEF:1.0390037742;POU1F1:0.996843077917;PAX4:0.951948254909;SRF:0.947982927138;PAX1,9:0.947264625064;CDC5L:0.908896892195;HOX{A5,B5}:0.908074572404;AIRE:0.810504725621;KLF4:0.795649106406;ZIC1..3:0.795206638599;HSF1,2:0.789315280345;TAL1_TCF{3,4,12}:0.768257027725;HMGA1,2:0.761896379182;TLX1..3_NFIC{dimer}:0.700824339507;POU6F1:0.676664011677;RXR{A,B,G}:0.663510286359;HOX{A4,D4}:0.644274185951;MYBL2:0.632924101305;EN1,2:0.629992474602;NFATC1..3:0.629181593329;PPARG:0.620374648816;NANOG{mouse}:0.616912117282;PAX8:0.609370994001;POU3F1..4:0.607270476217;GATA4:0.600855235733;GZF1:0.593630059376;TEAD1:0.562013419765;TBP:0.521992691882;NFE2L2:0.518563366339;TFAP4:0.513314272756;ZNF384:0.51279206319;FOXM1:0.501877760224;GLI1..3:0.490368016374;EBF1:0.473795257525;HMX1:0.46608203057;NKX6-1,2:0.421404191579;HIF1A:0.39849257665;ATF6:0.39749527275;FOXD3:0.385448373685;FOX{I1,J2}:0.363201152965;BACH2:0.338808470033;CDX1,2,4:0.2888259724;bHLH_family:0.284095411663;LHX3,4:0.254094953882;NR3C1:0.244691947733;ZBTB16:0.240589424291;TLX2:0.239631074477;DBP:0.234612395956;HES1:0.230232743746;TFCP2:0.229713396282;PAX5:0.226950072329;FOXP3:0.217303836292;SOX2:0.21704842881;BPTF:0.214931156785;MZF1:0.20480751788;NFIX:0.192324482183;JUN:0.192292955912;IKZF1:0.168646773278;SOX17:0.167418856543;GTF2I:0.161051294968;PRDM1:0.158002473289;GTF2A1,2:0.157353940965;TBX4,5:0.142917305484;FOS_FOS{B,L1}_JUN{B,D}:0.119450168436;REST:0.110887595197;FOXQ1:0.11008364153;GFI1B:0.108448845592;HLF:0.0898071455433;IKZF2:0.0710846767837;CRX:0.0562801855551;HBP1_HMGB_SSRP1_UBTF:0.0401855795481;HOXA9_MEIS1:0.0142450151026;SOX5:0.0123445904221;NFKB1_REL_RELA:0.00755049752127;LEF1_TCF7_TCF7L1,2:0.00240695221678;MAFB:-0.00623533781646;FOSL2:-0.0100110335681;PAX6:-0.0338261659164;SPZ1:-0.0649959198531;MTE{core}:-0.0703704122096;HAND1,2:-0.0740397008144;AHR_ARNT_ARNT2:-0.088012099164;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.090344576066;HNF1A:-0.11763858065;RUNX1..3:-0.119245935432;PATZ1:-0.184713362822;TFAP2{A,C}:-0.200149973775;PITX1..3:-0.206650924389;MYB:-0.209204606539;NKX2-1,4:-0.214957367823;MEF2{A,B,C,D}:-0.217122006082;YY1:-0.225018971627;NFE2:-0.235021170413;MYFfamily:-0.237597719176;ELK1,4_GABP{A,B1}:-0.24385941743;ELF1,2,4:-0.24639900841;STAT5{A,B}:-0.271305315742;SMAD1..7,9:-0.274516461468;TOPORS:-0.281221387175;ESR1:-0.287330130394;STAT2,4,6:-0.297911059857;MED-1{core}:-0.298598284974;ADNP_IRX_SIX_ZHX:-0.300605393113;SOX{8,9,10}:-0.300761237716;FOX{D1,D2}:-0.301658778535;AR:-0.302977852724;ETS1,2:-0.306036690584;NFIL3:-0.312588321306;ARID5B:-0.321678575739;SPI1:-0.326050894289;RREB1:-0.326762225993;MAZ:-0.351009159308;OCT4_SOX2{dimer}:-0.353155539779;RFX1:-0.362876158397;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.368608841053;TFAP2B:-0.381729308679;POU5F1:-0.386146145599;HNF4A_NR2F1,2:-0.402629972554;CEBPA,B_DDIT3:-0.404520884196;DMAP1_NCOR{1,2}_SMARC:-0.415236271069;RXRA_VDR{dimer}:-0.421490499276;PRRX1,2:-0.431496674493;HIC1:-0.440126272346;POU2F1..3:-0.449216695339;NR6A1:-0.468607003628;NRF1:-0.475366774488;ZNF143:-0.475526804386;NR1H4:-0.490405591192;ZFP161:-0.502332144734;NHLH1,2:-0.502441306928;PAX2:-0.517929149217;SPIB:-0.518935022956;MTF1:-0.520845242541;ESRRA:-0.544992787671;SNAI1..3:-0.558762582073;ATF5_CREB3:-0.558810946679;IRF1,2:-0.568058294491;TGIF1:-0.574926944032;ZNF148:-0.585275274105;HOX{A6,A7,B6,B7}:-0.601935974538;LMO2:-0.618713480137;ZEB1:-0.638494317078;E2F1..5:-0.657105095741;GFI1:-0.66155048654;XCPE1{core}:-0.673719809009;FOXP1:-0.677700796338;RFX2..5_RFXANK_RFXAP:-0.699415694171;T:-0.701613775369;FOXO1,3,4:-0.711780944919;ZNF423:-0.745995696146;GATA6:-0.758106860094;CUX2:-0.763642658218;CREB1:-0.782113995182;IRF7:-0.824977059906;NKX2-3_NKX2-5:-0.84724561134;SREBF1,2:-0.850559602711;ATF2:-0.850646683573;VSX1,2:-0.861989242716;TFDP1:-0.865058800869;EGR1..3:-0.872074022411;MYOD1:-0.876479859956;PBX1:-0.915241941346;FOX{F1,F2,J1}:-0.924540199271;STAT1,3:-0.926761714852;SP1:-0.957309366703;FOXN1:-0.973457034106;NR5A1,2:-1.0030881702;ATF4:-1.00609105649;PDX1:-1.03407429451;FOXA2:-1.07918920484;RBPJ:-1.10570485406;PAX3,7:-1.16775709443;NFY{A,B,C}:-1.22755076639;BREu{core}:-1.25590848879;NANOG:-1.29102775175;EP300:-1.38166149709;RORA:-1.46528356053 | ||
|xref= | |xref= | ||
}} | }} | ||
Revision as of 21:53, 10 August 2017
| Name: | Aortic smooth muscle cell response to FGF2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13358 |
| Sample type: | time courses |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12 |
| CAGEd-oPOSSUM: | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13358
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13358
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.121 |
| 10 | 10 | 0.277 |
| 100 | 100 | 0.618 |
| 101 | 101 | 0.993 |
| 102 | 102 | 0.958 |
| 103 | 103 | 0.111 |
| 104 | 104 | 0.691 |
| 105 | 105 | 0.384 |
| 106 | 106 | 0.0213 |
| 107 | 107 | 0.124 |
| 108 | 108 | 0.324 |
| 109 | 109 | 0.285 |
| 11 | 11 | 0.0515 |
| 110 | 110 | 0.0956 |
| 111 | 111 | 0.0905 |
| 112 | 112 | 0.116 |
| 113 | 113 | 0.125 |
| 114 | 114 | 0.032 |
| 115 | 115 | 0.174 |
| 116 | 116 | 0.125 |
| 117 | 117 | 0.206 |
| 118 | 118 | 0.475 |
| 119 | 119 | 0.309 |
| 12 | 12 | 0.909 |
| 120 | 120 | 0.0229 |
| 121 | 121 | 0.631 |
| 122 | 122 | 0.0764 |
| 123 | 123 | 0.154 |
| 124 | 124 | 0.787 |
| 125 | 125 | 0.328 |
| 126 | 126 | 0.308 |
| 127 | 127 | 0.903 |
| 128 | 128 | 0.0701 |
| 129 | 129 | 0.366 |
| 13 | 13 | 0.486 |
| 130 | 130 | 0.643 |
| 131 | 131 | 0.751 |
| 132 | 132 | 0.729 |
| 133 | 133 | 0.987 |
| 134 | 134 | 0.773 |
| 135 | 135 | 0.312 |
| 136 | 136 | 0.842 |
| 137 | 137 | 0.402 |
| 138 | 138 | 0.766 |
| 139 | 139 | 0.402 |
| 14 | 14 | 0.866 |
| 140 | 140 | 0.00286 |
| 141 | 141 | 0.831 |
| 142 | 142 | 0.578 |
| 143 | 143 | 0.0169 |
| 144 | 144 | 0.176 |
| 145 | 145 | 0.148 |
| 146 | 146 | 0.97 |
| 147 | 147 | 0.263 |
| 148 | 148 | 0.017 |
| 149 | 149 | 0.0506 |
| 15 | 15 | 0.221 |
| 150 | 150 | 0.135 |
| 151 | 151 | 0.682 |
| 152 | 152 | 0.0792 |
| 153 | 153 | 0.838 |
| 154 | 154 | 0.951 |
| 155 | 155 | 0.187 |
| 156 | 156 | 0.986 |
| 157 | 157 | 0.383 |
| 158 | 158 | 0.0408 |
| 159 | 159 | 0.142 |
| 16 | 16 | 0.0451 |
| 160 | 160 | 0.168 |
| 161 | 161 | 0.808 |
| 162 | 162 | 0.371 |
| 163 | 163 | 0.803 |
| 164 | 164 | 0.0713 |
| 165 | 165 | 0.845 |
| 166 | 166 | 0.407 |
| 167 | 167 | 0.586 |
| 168 | 168 | 0.366 |
| 169 | 169 | 0.0348 |
| 17 | 17 | 0.134 |
| 18 | 18 | 0.108 |
| 19 | 19 | 0.0754 |
| 2 | 2 | 0.479 |
| 20 | 20 | 0.908 |
| 21 | 21 | 0.28 |
| 22 | 22 | 0.461 |
| 23 | 23 | 0.197 |
| 24 | 24 | 0.964 |
| 25 | 25 | 0.448 |
| 26 | 26 | 0.0823 |
| 27 | 27 | 0.313 |
| 28 | 28 | 0.547 |
| 29 | 29 | 0.0596 |
| 3 | 3 | 0.145 |
| 30 | 30 | 0.788 |
| 31 | 31 | 0.31 |
| 32 | 32 | 2.29153e-4 |
| 33 | 33 | 0.482 |
| 34 | 34 | 0.881 |
| 35 | 35 | 0.115 |
| 36 | 36 | 0.731 |
| 37 | 37 | 0.0194 |
| 38 | 38 | 0.697 |
| 39 | 39 | 0.325 |
| 4 | 4 | 0.976 |
| 40 | 40 | 0.704 |
| 41 | 41 | 0.699 |
| 42 | 42 | 0.778 |
| 43 | 43 | 0.179 |
| 44 | 44 | 0.0317 |
| 45 | 45 | 0.698 |
| 46 | 46 | 0.0348 |
| 47 | 47 | 0.23 |
| 48 | 48 | 0.272 |
| 49 | 49 | 0.483 |
| 5 | 5 | 0.42 |
| 50 | 50 | 0.63 |
| 51 | 51 | 0.752 |
| 52 | 52 | 0.702 |
| 53 | 53 | 0.37 |
| 54 | 54 | 0.595 |
| 55 | 55 | 0.338 |
| 56 | 56 | 0.679 |
| 57 | 57 | 0.13 |
| 58 | 58 | 0.914 |
| 59 | 59 | 0.0333 |
| 6 | 6 | 0.615 |
| 60 | 60 | 0.316 |
| 61 | 61 | 0.7 |
| 62 | 62 | 0.375 |
| 63 | 63 | 0.126 |
| 64 | 64 | 0.564 |
| 65 | 65 | 0.268 |
| 66 | 66 | 0.443 |
| 67 | 67 | 0.352 |
| 68 | 68 | 0.541 |
| 69 | 69 | 0.65 |
| 7 | 7 | 0.929 |
| 70 | 70 | 0.0812 |
| 71 | 71 | 0.145 |
| 72 | 72 | 0.725 |
| 73 | 73 | 0.0381 |
| 74 | 74 | 0.00617 |
| 75 | 75 | 0.43 |
| 76 | 76 | 0.581 |
| 77 | 77 | 0.0202 |
| 78 | 78 | 0.369 |
| 79 | 79 | 0.00312 |
| 8 | 8 | 0.0126 |
| 80 | 80 | 0.572 |
| 81 | 81 | 0.214 |
| 82 | 82 | 0.0752 |
| 83 | 83 | 0.976 |
| 84 | 84 | 0.552 |
| 85 | 85 | 0.0495 |
| 86 | 86 | 0.47 |
| 87 | 87 | 0.184 |
| 88 | 88 | 0.168 |
| 89 | 89 | 0.0982 |
| 9 | 9 | 0.499 |
| 90 | 90 | 0.0947 |
| 91 | 91 | 0.54 |
| 92 | 92 | 0.235 |
| 93 | 93 | 0.491 |
| 94 | 94 | 0.236 |
| 95 | 95 | 0.306 |
| 96 | 96 | 0.385 |
| 97 | 97 | 0.803 |
| 98 | 98 | 0.723 |
| 99 | 99 | 0.136 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13358
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000546 human Aortic Smooth Muscle cells 0min after treatment with FGF2 sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002539 (aortic smooth muscle cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001135 (smooth muscle tissue)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0002385 (muscle tissue)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0004237 (blood vessel smooth muscle)
0004695 (arterial system smooth muscle)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0002111 (artery smooth muscle tissue)
0007798 (vascular system)
0001015 (musculature)
0004178 (aorta smooth muscle tissue)
0002204 (musculoskeletal system)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0000383 (musculature of body)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000350 (experimentally modified sample)
0000344 (0 minute sample)
0000339 (FGF2 treatment sample)
0000546 (human Aortic Smooth Muscle cells 0min after treatment with FGF2 sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
