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{{f5samples
 
{{f5samples
|DRA_sample_Accession=CAGE@DRS008479
+
|DRA_sample_Accession=CAGE@SAMD00005756
|accession_numbers=CAGE;DRX008587;DRR009459;DRZ000884;DRZ002269
+
|accession_numbers=CAGE;DRX008587;DRR009459;DRZ000884;DRZ002269;DRZ012234;DRZ013619
 
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000061,UBERON:0000465,UBERON:0001062
 
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000061,UBERON:0000465,UBERON:0001062
 
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002321,CL:0000255,CL:0000034,CL:0002322
 
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002321,CL:0000255,CL:0000034,CL:0002322
Line 9: Line 9:
 
|created_by=
 
|created_by=
 
|creation_date=
 
|creation_date=
|datafreeze_phase=1
+
|data_phase=2
 +
|datafreeze_phase=2
 
|def=
 
|def=
 
|expression_enrichment_score=chr20:31350184..31350200,+!p1@DNMT3B!2.57!740.31!DNMT3B;;chr3:181429704..181429722,+!p1@SOX2!2.30!197.07!SOX2;;chr1:6304233..6304243,+!p1@HES3!2.11!128.42!HES3;;chr8:145701192..145701241,-!p1@FOXH1!2.07!115.30!FOXH1;;chr8:73921136..73921151,+!p2@TERF1!2.05!162.35!TERF1;;chr4:188916918..188916942,+!p1@ZFP42!2.05!112.12!ZFP42;;chr6:31138439..31138475,-!p1@POU5F1!2.00!98.20!POU5F1;;chr10:135043702..135043729,+!p1@UTF1!1.99!97.14!UTF1;;chr8:70983476..70983493,-!p1@PRDM14!1.94!87.07!PRDM14;;chr14:57272369..57272391,-!p2@OTX2!1.94!85.61!OTX2;;chr16:3149278..3149305,-!p1@ZSCAN10!1.85!70.37!ZSCAN10;;chr14:22005197..22005261,-!p3@SALL2!1.79!61.36!SALL2;;chr3:181429741..181429767,+!p2@SOX2!1.72!51.42!SOX2;;chr3:57234000..57234014,-!p1@HESX1!1.71!50.36!HESX1;;chrX:136648279..136648295,+!p1@ZIC3!1.70!49.04!ZIC3;;chr2:5832508..5832524,+!p1@SOX11!1.66!44.93!SOX11;;chr13:100623375..100623425,-!p1@ZIC5!1.63!42.01!ZIC5;;chr1:164528687..164528711,+!p6@PBX1!1.62!47.45!PBX1;;chr20:50418972..50419029,-!p1@SALL4!1.61!39.89!SALL4;;chr13:100634031..100634045,+!p1@ZIC2!1.60!38.43!ZIC2;;chr9:114287433..114287513,+!p1@ZNF483!1.59!94.49!ZNF483;;chr2:16080659..16080685,+!p1@MYCN!1.59!38.30!MYCN;;chr11:63684602..63684664,-!p1@RCOR2!1.57!69.45!RCOR2;;chr8:70983443..70983460,-!p2@PRDM14!1.55!34.46!PRDM14;;chr4:299227..299272,-!p1@ZNF732!1.54!33.53!ZNF732;;chr2:25475120..25475176,-!p2@DNMT3A!1.53!44.26!DNMT3A;;chr14:57277178..57277203,-!p1@OTX2!1.53!33.00!OTX2;;chr5:2751762..2751784,-!p1@IRX2!1.52!32.20!IRX2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.48!29.42!ZBED1;;chr2:25475094..25475112,-!p3@DNMT3A!1.48!28.89!DNMT3A;;chr17:7493405..7493419,-!p1@SOX15!1.46!27.83!SOX15;;chr2:16081912..16081931,+!p2@MYCN!1.45!27.04!MYCN;;chrX:136648643..136648711,+!p2@ZIC3!1.42!25.05!ZIC3;;chr19:20188776..20188826,+!p1@ZNF90!1.39!62.69!ZNF90;;chr20:50418128..50418147,-!p2@SALL4!1.38!23.19!SALL4;;chr12:7941989..7942014,+!p1@NANOG!1.37!22.40!NANOG;;chr13:100634004..100634025,+!p2@ZIC2!1.37!22.27!ZIC2;;chr5:2751785..2751808,-!p2@IRX2!1.36!21.87!IRX2;;chr8:73921067..73921078,+!p3@TERF1!1.34!32.60!TERF1;;chr19:46800289..46800327,+!p2@HIF3A!1.33!20.54!HIF3A;;chr6:15246200..15246214,+!p2@JARID2!1.32!53.54!JARID2;;chr20:35202909..35202963,+!p2@TGIF2,p3@C20orf24!1.32!28.36!TGIF2;;chr3:71355163..71355209,-!p5@FOXP1!1.27!24.12!FOXP1;;chr19:23299814..23299844,+!p1@ZNF730!1.26!21.20!ZNF730;;chr8:70983506..70983522,-!p3@PRDM14!1.26!17.10!PRDM14;;chr10:70320074..70320106,+!p1@TET1!1.25!33.40!TET1;;chr8:145701166..145701187,-!p2@FOXH1!1.23!16.04!FOXH1;;chr2:16082155..16082169,+!p3@MYCN!1.20!14.84!MYCN;;chr3:48282587..48282603,+!p1@ZNF589!1.19!63.88!ZNF589;;chr3:170076314..170076334,+!p2@SKIL!1.19!18.82!SKIL;;chr20:50419055..50419066,-!p3@SALL4!1.19!14.31!SALL4;;chr19:45579725..45579743,-!p1@ZNF296!1.18!62.55!ZNF296;;chr2:88752207..88752218,-!p1@FOXI3!1.18!14.05!FOXI3;;chr10:126138597..126138612,-!p1@NKX1-2!1.16!13.52!NKX1-2;;chr1:201979703..201979721,+!p2@ELF3!1.16!13.39!ELF3;;chr2:42795745..42795824,+!p1@MTA3!1.15!121.00!MTA3;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!1.15!28.89!SOHLH2;;chr9:127533519..127533573,-!p2@NR6A1!1.15!15.90!NR6A1;;chr17:46132044..46132080,+!p4@NFE2L1!1.14!12.72!NFE2L1;;chr17:7197911..7197964,-!p1@YBX2!1.14!12.72!YBX2;;chr19:23433144..23433204,-!p1@ZNF724P!1.12!54.20!ZNF724P;;chr10:135043493..135043510,+!p2@UTF1!1.12!12.33!UTF1;;chr12:19592405..19592492,+!p2@AEBP2!1.11!102.31!AEBP2;;chr2:121493425..121493474,+!p1@GLI2!1.11!26.11!GLI2;;chr13:100638100..100638115,+!p4@ZIC2!1.10!11.66!ZIC2;;chr19:58400344..58400364,-!p2@ZNF814!1.09!16.70!ZNF814;;chr18:56531584..56531646,+!p4@ZNF532!1.09!15.11!ZNF532;;chr11:128457446..128457461,-!p4@ETS1!1.09!11.40!ETS1;;chr20:55204351..55204377,+!p1@TFAP2C!1.08!14.18!TFAP2C;;chrX:136648297..136648319,+!p3@ZIC3!1.08!11.13!ZIC3;;chr19:20011775..20011800,+!p2@ZNF93!1.07!19.61!ZNF93;;chr13:100634130..100634143,+!p3@ZIC2!1.07!10.73!ZIC2;;chr1:63788229..63788250,+!p1@FOXD3!1.06!10.60!FOXD3;;chr8:70983462..70983471,-!p4@PRDM14!1.06!10.47!PRDM14;;chr14:21994337..21994442,-!p1@SALL2!1.05!28.23!SALL2;;chr18:56530136..56530199,+!p3@ZNF532!1.05!15.37!ZNF532;;chr8:37963466..37963506,+!p3@ASH2L!1.05!12.99!ASH2L;;chr16:51185363..51185381,-!p4@SALL1!1.05!10.34!SALL1;;chr2:16080635..16080650,+!p4@MYCN!1.04!9.94!MYCN;;chr1:204042233..204042249,+!p1@SOX13!1.02!61.36!SOX13;;chr19:20011744..20011770,+!p1@ZNF93!1.02!37.11!ZNF93;;chr12:66218836..66218888,+!p1@HMGA2!1.01!88.66!HMGA2;;chr16:29818199..29818216,+!p11@MAZ!1.01!15.24!MAZ;;chr14:55493763..55493824,-!p1@WDHD1!1.00!69.58!WDHD1;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!1.00!9.01!MEF2B;;chr19:46367576..46367592,+!p1@FOXA3!0.99!8.88!FOXA3;;chrX:139587228..139587234,-!p1@SOX3!0.99!8.88!SOX3;;chr19:23299851..23299880,+!p2@ZNF730!0.99!8.75!ZNF730;;chr2:88752231..88752245,-!p2@FOXI3!0.99!8.75!FOXI3;;chr2:5832493..5832507,+!p2@SOX11!0.98!8.48!SOX11;;chr14:22005343..22005364,-!p5@SALL2!0.98!8.48!SALL2;;chr1:247171316..247171336,-!p3@ZNF695!0.97!12.59!ZNF695;;chr8:86089627..86089653,+!p3@E2F5!0.97!9.41!E2F5;;chr3:185797712..185797746,-!p6@ETV5!0.97!8.35!ETV5;;chr2:85360499..85360598,+!p1@TCF7L1!0.96!46.39!TCF7L1;;chr19:20959098..20959117,+!p1@ZNF66P!0.96!34.99!ZNF66P;;chr9:127533582..127533615,-!p1@NR6A1!0.96!12.19!NR6A1;;chr4:26322267..26322334,+!p3@RBPJ!0.95!19.48!RBPJ;;chr12:66218183..66218209,+!p4@HMGA2!0.95!15.64!HMGA2;;chrX:84499081..84499115,+!p2@ZNF711!0.95!11.80!ZNF711;;chr6:137815524..137815537,-!p1@OLIG3!0.95!7.95!OLIG3;;chr8:102504651..102504683,+!p1@GRHL2!0.95!7.82!GRHL2;;chr19:22034809..22034878,-!p2@ZNF43!0.94!28.10!ZNF43;;chr7:26191809..26191890,+!p1@NFE2L3!0.93!38.43!NFE2L3;;chr16:51185318..51185348,-!p2@SALL1!0.93!7.55!SALL1;;chr19:48774586..48774670,+!p1@ZNF114!0.92!9.28!ZNF114;;chr16:51185573..51185593,-!p3@SALL1!0.92!7.29!SALL1;;chr2:45168875..45168916,+!p1@SIX3!0.92!7.29!SIX3;;chr9:127358120..127358170,-!p3@NR6A1!0.91!7.16!NR6A1;;chr12:66218598..66218645,+!p2@HMGA2!0.90!33.13!HMGA2;;chr18:76740152..76740186,+!p2@SALL3!0.90!7.02!SALL3;;chr20:42295713..42295738,+!p2@MYBL2!0.89!41.61!MYBL2;;chr2:60780753..60780800,-!p1@BCL11A!0.89!34.72!BCL11A;;chr19:52408227..52408243,-!p2@ZNF649!0.89!15.51!ZNF649;;chr1:38512457..38512474,-!p1@POU3F1!0.89!7.42!POU3F1;;chr19:9695169..9695188,-!p1@ZNF121!0.88!121.26!ZNF121;;chr8:37963407..37963454,+!p2@ASH2L!0.88!20.54!ASH2L;;chr12:66218378..66218401,+!p6@HMGA2!0.88!10.47!HMGA2;;chr3:170076223..170076242,+!p6@SKIL!0.88!7.42!SKIL;;chr12:66218152..66218174,+!p10@HMGA2!0.88!7.02!HMGA2;;chr7:74072135..74072171,+!p2@GTF2I!0.87!20.94!GTF2I;;chr3:40547505..40547545,+!p2@ZNF620!0.87!10.60!ZNF620;;chr19:58341656..58341694,+!p5@ZNF587!0.87!7.95!ZNF587;;chr19:50922187..50922204,+!p1@SPIB!0.87!6.49!SPIB;;chr1:226411361..226411366,+!p1@MIXL1!0.87!6.49!MIXL1;;chr12:7079780..7079791,-!p2@PHB2!0.86!34.33!PHB2;;chr19:54024251..54024305,+!p4@ZNF331!0.86!10.47!ZNF331;;chr1:201979743..201979762,+!p1@ELF3!0.86!6.23!ELF3;;chr1:247171347..247171366,-!p2@ZNF695!0.85!11.66!ZNF695;;chr19:54024313..54024361,+!p7@ZNF331!0.85!6.10!ZNF331;;chr9:86594530..86594564,-!p@chr9:86594530..86594564,-!0.84!23.72!HNRPK;;chr15:74833584..74833626,+!p1@ARID3B!0.84!14.31!ARID3B;;chr20:50418947..50418964,-!p4@SALL4!0.84!5.96!SALL4;;chr12:113909667..113909681,-!p1@LHX5!0.84!5.96!LHX5;;chr13:100623360..100623373,-!p2@ZIC5!0.84!5.96!ZIC5;;chr19:20278012..20278034,+!p1@ZNF486!0.83!51.29!ZNF486;;chr19:21265028..21265052,+!p2@ZNF714!0.83!10.73!ZNF714;;chr1:151032922..151032951,+!p2@MLLT11!0.83!9.94!MLLT11;;chr17:41622765..41622821,-!p2@ETV4!0.83!9.01!ETV4;;chr7:14028743..14028799,-!p3@ETV1!0.83!7.42!ETV1;;chr2:45168834..45168847,+!p2@SIX3!0.83!5.70!SIX3;;chr20:45087928..45087965,-!p1@ENST00000400371,p1@uc002xry.2!0.83!5.70!ZNF663;;chr12:66218255..66218304,+!p3@HMGA2!0.82!16.04!HMGA2;;chr5:124084493..124084524,-!p2@ZNF608!0.82!13.12!ZNF608;;chr3:141747441..141747452,-!p4@TFDP2!0.82!8.08!TFDP2;;chr14:21566540..21566580,-!p2@ZNF219!0.82!7.69!ZNF219;;chr6:15245797..15245818,+!p8@JARID2!0.82!7.02!JARID2;;chr2:171571827..171571853,+!p1@SP5!0.82!5.57!SP5;;chr6:15246261..15246312,+!p1@JARID2!0.81!144.46!JARID2;;chr4:83821835..83821896,+!p1@THAP9!0.81!18.69!THAP9;;chr8:145669791..145669834,-!p1@TONSL!0.81!16.70!TONSL;;chr21:34144157..34144175,-!p3@GCFC1!0.81!9.01!GCFC1;;chr2:60778035..60778060,-!p4@BCL11A!0.81!6.63!BCL11A;;chr3:52002412..52002433,-!p7@PCBP4!0.81!5.43!PCBP4;;chr19:47538560..47538591,+!p2@NPAS1!0.81!5.43!NPAS1;;chr7:121944796..121944814,-!p1@FEZF1!0.81!5.43!FEZF1;;chr14:90085820..90085840,-!p6@FOXN3!0.81!5.43!FOXN3;;chr12:50479109..50479146,+!p2@SMARCD1!0.80!98.20!SMARCD1;;chrX:129402866..129402880,-!p1@ZNF280C!0.80!33.00!ZNF280C;;chr19:53868940..53868990,+!p1@ZNF525,p2@ZNF765!0.80!16.17!ZNF525;;chr19:20150268..20150298,-!p2@ZNF682!0.80!10.47!ZNF682;;chr10:70320041..70320065,+!p2@TET1!0.80!5.30!TET1;;chr2:166326200..166326216,+!p1@CSRNP3!0.79!7.82!CSRNP3;;chr12:3068544..3068597,+!p1@TEAD4!0.78!33.00!TEAD4;;chr19:23941680..23941704,-!p1@ZNF681!0.78!15.90!ZNF681;;chr3:48282536..48282586,+!p2@ZNF589!0.78!14.58!ZNF589;;chr3:44626446..44626477,+!p1@ZNF660!0.78!9.41!ZNF660;;chr18:47814010..47814021,-!p3@CXXC1!0.78!8.88!CXXC1;;chr12:66218573..66218596,+!p7@HMGA2!0.78!7.69!HMGA2;;chr3:40547564..40547616,+!p1@ZNF620!0.78!7.42!ZNF620;;chr19:49864746..49864780,-!p2@TEAD2!0.78!7.16!TEAD2;;chr10:135043690..135043701,+!p4@UTF1!0.78!5.04!UTF1;;chr12:66218420..66218439,+!p12@HMGA2!0.78!5.04!HMGA2;;chrX:136648554..136648576,+!p4@ZIC3!0.78!5.04!ZIC3;;chr2:88752256..88752265,-!p3@FOXI3!0.78!5.04!FOXI3;;chr16:29818160..29818188,+!p6@MAZ!0.77!24.92!MAZ;;chr6:31869828..31869880,-!p1@ZBTB12!0.77!9.67!ZBTB12;;chr12:54785074..54785122,-!p2@ZNF385A!0.77!7.82!ZNF385A;;chr19:21264991..21265026,+!p1@ZNF714!0.76!34.06!ZNF714;;chr19:52408257..52408278,-!p1@ZNF649!0.76!33.93!ZNF649;;chr6:19837592..19837621,+!p1@ID4!0.76!32.07!ID4;;chr2:121493492..121493537,+!p2@GLI2!0.76!8.22!GLI2;;chr15:85144307..85144329,+!p2@ZSCAN2!0.76!5.57!ZSCAN2;;chr6:126070769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|expression_enrichment_score=chr20:31350184..31350200,+!p1@DNMT3B!2.57!740.31!DNMT3B;;chr3:181429704..181429722,+!p1@SOX2!2.30!197.07!SOX2;;chr1:6304233..6304243,+!p1@HES3!2.11!128.42!HES3;;chr8:145701192..145701241,-!p1@FOXH1!2.07!115.30!FOXH1;;chr8:73921136..73921151,+!p2@TERF1!2.05!162.35!TERF1;;chr4:188916918..188916942,+!p1@ZFP42!2.05!112.12!ZFP42;;chr6:31138439..31138475,-!p1@POU5F1!2.00!98.20!POU5F1;;chr10:135043702..135043729,+!p1@UTF1!1.99!97.14!UTF1;;chr8:70983476..70983493,-!p1@PRDM14!1.94!87.07!PRDM14;;chr14:57272369..57272391,-!p2@OTX2!1.94!85.61!OTX2;;chr16:3149278..3149305,-!p1@ZSCAN10!1.85!70.37!ZSCAN10;;chr14:22005197..22005261,-!p3@SALL2!1.79!61.36!SALL2;;chr3:181429741..181429767,+!p2@SOX2!1.72!51.42!SOX2;;chr3:57234000..57234014,-!p1@HESX1!1.71!50.36!HESX1;;chrX:136648279..136648295,+!p1@ZIC3!1.70!49.04!ZIC3;;chr2:5832508..5832524,+!p1@SOX11!1.66!44.93!SOX11;;chr13:100623375..100623425,-!p1@ZIC5!1.63!42.01!ZIC5;;chr1:164528687..164528711,+!p6@PBX1!1.62!47.45!PBX1;;chr20:50418972..50419029,-!p1@SALL4!1.61!39.89!SALL4;;chr13:100634031..100634045,+!p1@ZIC2!1.60!38.43!ZIC2;;chr9:114287433..114287513,+!p1@ZNF483!1.59!94.49!ZNF483;;chr2:16080659..16080685,+!p1@MYCN!1.59!38.30!MYCN;;chr11:63684602..63684664,-!p1@RCOR2!1.57!69.45!RCOR2;;chr8:70983443..70983460,-!p2@PRDM14!1.55!34.46!PRDM14;;chr4:299227..299272,-!p1@ZNF732!1.54!33.53!ZNF732;;chr2:25475120..25475176,-!p2@DNMT3A!1.53!44.26!DNMT3A;;chr14:57277178..57277203,-!p1@OTX2!1.53!33.00!OTX2;;chr5:2751762..2751784,-!p1@IRX2!1.52!32.20!IRX2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.48!29.42!ZBED1;;chr2:25475094..25475112,-!p3@DNMT3A!1.48!28.89!DNMT3A;;chr17:7493405..7493419,-!p1@SOX15!1.46!27.83!SOX15;;chr2:16081912..16081931,+!p2@MYCN!1.45!27.04!MYCN;;chrX:136648643..136648711,+!p2@ZIC3!1.42!25.05!ZIC3;;chr19:20188776..20188826,+!p1@ZNF90!1.39!62.69!ZNF90;;chr20:50418128..50418147,-!p2@SALL4!1.38!23.19!SALL4;;chr12:7941989..7942014,+!p1@NANOG!1.37!22.40!NANOG;;chr13:100634004..100634025,+!p2@ZIC2!1.37!22.27!ZIC2;;chr5:2751785..2751808,-!p2@IRX2!1.36!21.87!IRX2;;chr8:73921067..73921078,+!p3@TERF1!1.34!32.60!TERF1;;chr19:46800289..46800327,+!p2@HIF3A!1.33!20.54!HIF3A;;chr6:15246200..15246214,+!p2@JARID2!1.32!53.54!JARID2;;chr20:35202909..35202963,+!p2@TGIF2,p3@C20orf24!1.32!28.36!TGIF2;;chr3:71355163..71355209,-!p5@FOXP1!1.27!24.12!FOXP1;;chr19:23299814..23299844,+!p1@ZNF730!1.26!21.20!ZNF730;;chr8:70983506..70983522,-!p3@PRDM14!1.26!17.10!PRDM14;;chr10:70320074..70320106,+!p1@TET1!1.25!33.40!TET1;;chr8:145701166..145701187,-!p2@FOXH1!1.23!16.04!FOXH1;;chr2:16082155..16082169,+!p3@MYCN!1.20!14.84!MYCN;;chr3:48282587..48282603,+!p1@ZNF589!1.19!63.88!ZNF589;;chr3:170076314..170076334,+!p2@SKIL!1.19!18.82!SKIL;;chr20:50419055..50419066,-!p3@SALL4!1.19!14.31!SALL4;;chr19:45579725..45579743,-!p1@ZNF296!1.18!62.55!ZNF296;;chr2:88752207..88752218,-!p1@FOXI3!1.18!14.05!FOXI3;;chr10:126138597..126138612,-!p1@NKX1-2!1.16!13.52!NKX1-2;;chr1:201979703..201979721,+!p2@ELF3!1.16!13.39!ELF3;;chr2:42795745..42795824,+!p1@MTA3!1.15!121.00!MTA3;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!1.15!28.89!SOHLH2;;chr9:127533519..127533573,-!p2@NR6A1!1.15!15.90!NR6A1;;chr17:46132044..46132080,+!p4@NFE2L1!1.14!12.72!NFE2L1;;chr17:7197911..7197964,-!p1@YBX2!1.14!12.72!YBX2;;chr19:23433144..23433204,-!p1@ZNF724P!1.12!54.20!ZNF724P;;chr10:135043493..135043510,+!p2@UTF1!1.12!12.33!UTF1;;chr12:19592405..19592492,+!p2@AEBP2!1.11!102.31!AEBP2;;chr2:121493425..121493474,+!p1@GLI2!1.11!26.11!GLI2;;chr13:100638100..100638115,+!p4@ZIC2!1.10!11.66!ZIC2;;chr19:58400344..58400364,-!p2@ZNF814!1.09!16.70!ZNF814;;chr18:56531584..56531646,+!p4@ZNF532!1.09!15.11!ZNF532;;chr11:128457446..128457461,-!p4@ETS1!1.09!11.40!ETS1;;chr20:55204351..55204377,+!p1@TFAP2C!1.08!14.18!TFAP2C;;chrX:136648297..136648319,+!p3@ZIC3!1.08!11.13!ZIC3;;chr19:20011775..20011800,+!p2@ZNF93!1.07!19.61!ZNF93;;chr13:100634130..100634143,+!p3@ZIC2!1.07!10.73!ZIC2;;chr1:63788229..63788250,+!p1@FOXD3!1.06!10.60!FOXD3;;chr8:70983462..70983471,-!p4@PRDM14!1.06!10.47!PRDM14;;chr14:21994337..21994442,-!p1@SALL2!1.05!28.23!SALL2;;chr18:56530136..56530199,+!p3@ZNF532!1.05!15.37!ZNF532;;chr8:37963466..37963506,+!p3@ASH2L!1.05!12.99!ASH2L;;chr16:51185363..51185381,-!p4@SALL1!1.05!10.34!SALL1;;chr2:16080635..16080650,+!p4@MYCN!1.04!9.94!MYCN;;chr1:204042233..204042249,+!p1@SOX13!1.02!61.36!SOX13;;chr19:20011744..20011770,+!p1@ZNF93!1.02!37.11!ZNF93;;chr12:66218836..66218888,+!p1@HMGA2!1.01!88.66!HMGA2;;chr16:29818199..29818216,+!p11@MAZ!1.01!15.24!MAZ;;chr14:55493763..55493824,-!p1@WDHD1!1.00!69.58!WDHD1;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!1.00!9.01!MEF2B;;chr19:46367576..46367592,+!p1@FOXA3!0.99!8.88!FOXA3;;chrX:139587228..139587234,-!p1@SOX3!0.99!8.88!SOX3;;chr19:23299851..23299880,+!p2@ZNF730!0.99!8.75!ZNF730;;chr2:88752231..88752245,-!p2@FOXI3!0.99!8.75!FOXI3;;chr2:5832493..5832507,+!p2@SOX11!0.98!8.48!SOX11;;chr14:22005343..22005364,-!p5@SALL2!0.98!8.48!SALL2;;chr1:247171316..247171336,-!p3@ZNF695!0.97!12.59!ZNF695;;chr8:86089627..86089653,+!p3@E2F5!0.97!9.41!E2F5;;chr3:185797712..185797746,-!p6@ETV5!0.97!8.35!ETV5;;chr2:85360499..85360598,+!p1@TCF7L1!0.96!46.39!TCF7L1;;chr19:20959098..20959117,+!p1@ZNF66P!0.96!34.99!ZNF66P;;chr9:127533582..127533615,-!p1@NR6A1!0.96!12.19!NR6A1;;chr4:26322267..26322334,+!p3@RBPJ!0.95!19.48!RBPJ;;chr12:66218183..66218209,+!p4@HMGA2!0.95!15.64!HMGA2;;chrX:84499081..84499115,+!p2@ZNF711!0.95!11.80!ZNF711;;chr6:137815524..137815537,-!p1@OLIG3!0.95!7.95!OLIG3;;chr8:102504651..102504683,+!p1@GRHL2!0.95!7.82!GRHL2;;chr19:22034809..22034878,-!p2@ZNF43!0.94!28.10!ZNF43;;chr7:26191809..26191890,+!p1@NFE2L3!0.93!38.43!NFE2L3;;chr16:51185318..51185348,-!p2@SALL1!0.93!7.55!SALL1;;chr19:48774586..48774670,+!p1@ZNF114!0.92!9.28!ZNF114;;chr16:51185573..51185593,-!p3@SALL1!0.92!7.29!SALL1;;chr2:45168875..45168916,+!p1@SIX3!0.92!7.29!SIX3;;chr9:127358120..127358170,-!p3@NR6A1!0.91!7.16!NR6A1;;chr12:66218598..66218645,+!p2@HMGA2!0.90!33.13!HMGA2;;chr18:76740152..76740186,+!p2@SALL3!0.90!7.02!SALL3;;chr20:42295713..42295738,+!p2@MYBL2!0.89!41.61!MYBL2;;chr2:60780753..60780800,-!p1@BCL11A!0.89!34.72!BCL11A;;chr19:52408227..52408243,-!p2@ZNF649!0.89!15.51!ZNF649;;chr1:38512457..38512474,-!p1@POU3F1!0.89!7.42!POU3F1;;chr19:9695169..9695188,-!p1@ZNF121!0.88!121.26!ZNF121;;chr8:37963407..37963454,+!p2@ASH2L!0.88!20.54!ASH2L;;chr12:66218378..66218401,+!p6@HMGA2!0.88!10.47!HMGA2;;chr3:170076223..170076242,+!p6@SKIL!0.88!7.42!SKIL;;chr12:66218152..66218174,+!p10@HMGA2!0.88!7.02!HMGA2;;chr7:74072135..74072171,+!p2@GTF2I!0.87!20.94!GTF2I;;chr3:40547505..40547545,+!p2@ZNF620!0.87!10.60!ZNF620;;chr19:58341656..58341694,+!p5@ZNF587!0.87!7.95!ZNF587;;chr19:50922187..50922204,+!p1@SPIB!0.87!6.49!SPIB;;chr1:226411361..226411366,+!p1@MIXL1!0.87!6.49!MIXL1;;chr12:7079780..7079791,-!p2@PHB2!0.86!34.33!PHB2;;chr19:54024251..54024305,+!p4@ZNF331!0.86!10.47!ZNF331;;chr1:201979743..201979762,+!p1@ELF3!0.86!6.23!ELF3;;chr1:247171347..247171366,-!p2@ZNF695!0.85!11.66!ZNF695;;chr19:54024313..54024361,+!p7@ZNF331!0.85!6.10!ZNF331;;chr9:86594530..86594564,-!p@chr9:86594530..86594564,-!0.84!23.72!HNRPK;;chr15:74833584..74833626,+!p1@ARID3B!0.84!14.31!ARID3B;;chr20:50418947..50418964,-!p4@SALL4!0.84!5.96!SALL4;;chr12:113909667..113909681,-!p1@LHX5!0.84!5.96!LHX5;;chr13:100623360..100623373,-!p2@ZIC5!0.84!5.96!ZIC5;;chr19:20278012..20278034,+!p1@ZNF486!0.83!51.29!ZNF486;;chr19:21265028..21265052,+!p2@ZNF714!0.83!10.73!ZNF714;;chr1:151032922..151032951,+!p2@MLLT11!0.83!9.94!MLLT11;;chr17:41622765..41622821,-!p2@ETV4!0.83!9.01!ETV4;;chr7:14028743..14028799,-!p3@ETV1!0.83!7.42!ETV1;;chr2:45168834..45168847,+!p2@SIX3!0.83!5.70!SIX3;;chr20:45087928..45087965,-!p1@ENST00000400371,p1@uc002xry.2!0.83!5.70!ZNF663;;chr12:66218255..66218304,+!p3@HMGA2!0.82!16.04!HMGA2;;chr5:124084493..124084524,-!p2@ZNF608!0.82!13.12!ZNF608;;chr3:141747441..141747452,-!p4@TFDP2!0.82!8.08!TFDP2;;chr14:21566540..21566580,-!p2@ZNF219!0.82!7.69!ZNF219;;chr6:15245797..15245818,+!p8@JARID2!0.82!7.02!JARID2;;chr2:171571827..171571853,+!p1@SP5!0.82!5.57!SP5;;chr6:15246261..15246312,+!p1@JARID2!0.81!144.46!JARID2;;chr4:83821835..83821896,+!p1@THAP9!0.81!18.69!THAP9;;chr8:145669791..145669834,-!p1@TONSL!0.81!16.70!TONSL;;chr21:34144157..34144175,-!p3@GCFC1!0.81!9.01!GCFC1;;chr2:60778035..60778060,-!p4@BCL11A!0.81!6.63!BCL11A;;chr3:52002412..52002433,-!p7@PCBP4!0.81!5.43!PCBP4;;chr19:47538560..47538591,+!p2@NPAS1!0.81!5.43!NPAS1;;chr7:121944796..121944814,-!p1@FEZF1!0.81!5.43!FEZF1;;chr14:90085820..90085840,-!p6@FOXN3!0.81!5.43!FOXN3;;chr12:50479109..50479146,+!p2@SMARCD1!0.80!98.20!SMARCD1;;chrX:129402866..129402880,-!p1@ZNF280C!0.80!33.00!ZNF280C;;chr19:53868940..53868990,+!p1@ZNF525,p2@ZNF765!0.80!16.17!ZNF525;;chr19:20150268..20150298,-!p2@ZNF682!0.80!10.47!ZNF682;;chr10:70320041..70320065,+!p2@TET1!0.80!5.30!TET1;;chr2:166326200..166326216,+!p1@CSRNP3!0.79!7.82!CSRNP3;;chr12:3068544..3068597,+!p1@TEAD4!0.78!33.00!TEAD4;;chr19:23941680..23941704,-!p1@ZNF681!0.78!15.90!ZNF681;;chr3:48282536..48282586,+!p2@ZNF589!0.78!14.58!ZNF589;;chr3:44626446..44626477,+!p1@ZNF660!0.78!9.41!ZNF660;;chr18:47814010..47814021,-!p3@CXXC1!0.78!8.88!CXXC1;;chr12:66218573..66218596,+!p7@HMGA2!0.78!7.69!HMGA2;;chr3:40547564..40547616,+!p1@ZNF620!0.78!7.42!ZNF620;;chr19:49864746..49864780,-!p2@TEAD2!0.78!7.16!TEAD2;;chr10:135043690..135043701,+!p4@UTF1!0.78!5.04!UTF1;;chr12:66218420..66218439,+!p12@HMGA2!0.78!5.04!HMGA2;;chrX:136648554..136648576,+!p4@ZIC3!0.78!5.04!ZIC3;;chr2:88752256..88752265,-!p3@FOXI3!0.78!5.04!FOXI3;;chr16:29818160..29818188,+!p6@MAZ!0.77!24.92!MAZ;;chr6:31869828..31869880,-!p1@ZBTB12!0.77!9.67!ZBTB12;;chr12:54785074..54785122,-!p2@ZNF385A!0.77!7.82!ZNF385A;;chr19:21264991..21265026,+!p1@ZNF714!0.76!34.06!ZNF714;;chr19:52408257..52408278,-!p1@ZNF649!0.76!33.93!ZNF649;;chr6:19837592..19837621,+!p1@ID4!0.76!32.07!ID4;;chr2:121493492..121493537,+!p2@GLI2!0.76!8.22!GLI2;;chr15:85144307..85144329,+!p2@ZSCAN2!0.76!5.57!ZSCAN2;;chr6:126070769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 +
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002322
 
|fonse_cell_line=FF:0100669
 
|fonse_cell_line=FF:0100669
 
|fonse_cell_line_closure=FF:0100669
 
|fonse_cell_line_closure=FF:0100669
Line 39: Line 41:
 
|fonse_treatment_closure=FF:0000343,FF:0000592,FF:12822-136I5
 
|fonse_treatment_closure=FF:0000343,FF:0000592,FF:12822-136I5
 
|has_quality=
 
|has_quality=
 +
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/H9%2520Embryonic%2520Stem%2520cells%252c%2520biol_rep3%2520%2528H9ES-3%2529.CNhs12837.12822-136I5.hg19.nobarcode.bam
 +
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/H9%2520Embryonic%2520Stem%2520cells%252c%2520biol_rep3%2520%2528H9ES-3%2529.CNhs12837.12822-136I5.hg19.ctss.bed.gz
 +
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/H9%2520Embryonic%2520Stem%2520cells%252c%2520biol_rep3%2520%2528H9ES-3%2529.CNhs12837.12822-136I5.hg19.nobarcode.rdna.fa.gz
 +
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/H9%2520Embryonic%2520Stem%2520cells%252c%2520biol_rep3%2520%2528H9ES-3%2529.CNhs12837.12822-136I5.hg38.nobarcode.bam
 +
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/H9%2520Embryonic%2520Stem%2520cells%252c%2520biol_rep3%2520%2528H9ES-3%2529.CNhs12837.12822-136I5.hg38.nobarcode.ctss.bed.gz
 
|id=FF:12822-136I5
 
|id=FF:12822-136I5
 
|is_a=EFO:0002091;;FF:0000592
 
|is_a=EFO:0002091;;FF:0000592
 
|is_obsolete=
 
|is_obsolete=
 
|library_id=CNhs12837
 
|library_id=CNhs12837
 +
|library_id_phase_based=2:CNhs12837
 +
|microRNAs=
 +
|microRNAs_nn=
 +
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12822
 +
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12822
 
|name=H9 Embryonic Stem cells, biol_rep3 (H9ES-3)
 
|name=H9 Embryonic Stem cells, biol_rep3 (H9ES-3)
 
|namespace=FANTOM5
 
|namespace=FANTOM5
Line 48: Line 60:
 
|profile_cagescan=,,,
 
|profile_cagescan=,,,
 
|profile_hcage=CNhs12837,LSID972,release012,COMPLETED
 
|profile_hcage=CNhs12837,LSID972,release012,COMPLETED
|profile_rnaseq=,,,
+
|profile_rnaseq=
 
|profile_srnaseq=,,,
 
|profile_srnaseq=,,,
 +
|refex=http://refex.dbcls.jp/genelist.php?lang
 
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Line 63: Line 76:
 
|rna_sample_type=
 
|rna_sample_type=
 
|rna_tube_id=136I5
 
|rna_tube_id=136I5
|rna_weight_ug=7.00
+
|rna_weight_ug=7
 
|sample_age=
 
|sample_age=
 
|sample_category=time courses
 
|sample_category=time courses
Line 85: Line 98:
 
|sample_strain=
 
|sample_strain=
 
|sample_tissue=unclassifiable
 
|sample_tissue=unclassifiable
 +
|timecourse=Melanocytic_differentiation
 
|top_motifs=OCT4_SOX2{dimer}:2.91492593832;PATZ1:1.84122359712;NANOG:1.80688414608;E2F1..5:1.79188900706;NFY{A,B,C}:1.71512137961;SP1:1.66939253708;SNAI1..3:1.58617313854;SOX{8,9,10}:1.56166671111;TFDP1:1.53820582719;PBX1:1.45120052957;CUX2:1.43666350523;RBPJ:1.40416206376;GFI1:1.37308395121;XCPE1{core}:1.33772979006;POU2F1..3:1.28774056574;LEF1_TCF7_TCF7L1,2:1.23309707367;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.22678905073;ZNF143:1.19175166348;SOX17:1.12742715936;ZEB1:1.12337911659;SOX2:1.09540168773;RORA:1.08363555758;MYOD1:1.02444324128;PAX1,9:1.00981233099;VSX1,2:1.00388588084;MZF1:0.998881693877;T:0.995727873183;NRF1:0.984982297549;EBF1:0.964874305835;ZIC1..3:0.943975490222;YY1:0.914611180662;LMO2:0.834169361626;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.795857151979;MYB:0.789322082194;MAZ:0.781048533627;RREB1:0.746914614131;NKX2-3_NKX2-5:0.745134232783;EN1,2:0.742012798244;bHLH_family:0.718961619292;POU5F1:0.704014233285;ESRRA:0.701105422227;ALX1:0.688044121372;FOXM1:0.67742207211;ONECUT1,2:0.645112053991;BREu{core}:0.629280702459;STAT5{A,B}:0.62022404385;CDC5L:0.605379868681;ELK1,4_GABP{A,B1}:0.575413311968;HOX{A4,D4}:0.564454393339;STAT1,3:0.561282374705;ZFP161:0.560649606401;AIRE:0.53826631603;POU3F1..4:0.451164908661;CRX:0.430154790317;ATF4:0.403258840132;ADNP_IRX_SIX_ZHX:0.396379224698;EVI1:0.39066305929;TOPORS:0.382815959878;ZNF384:0.380289762161;FOXN1:0.364908625527;IKZF2:0.304913700529;KLF4:0.292187678643;HOX{A5,B5}:0.283355236068;PRRX1,2:0.281037269149;PAX5:0.2328958605;HAND1,2:0.232636521639;TFAP2B:0.194559977309;HIC1:0.188021062813;FOXD3:0.17649928009;ARID5B:0.174001160007;GTF2I:0.138870426338;FOXA2:0.137474527443;CDX1,2,4:0.131801050816;HNF4A_NR2F1,2:0.1123440508;TP53:0.0982531068087;FOX{I1,J2}:0.0900983834121;REST:0.0846351681786;ZBTB6:0.0809674340534;GATA6:0.0713923456221;POU6F1:0.0665814672587;SREBF1,2:0.0639028622074;EGR1..3:0.0522352027531;LHX3,4:0.0334578349014;GCM1,2:0.00396272464938;HNF1A:-0.016442295307;TBX4,5:-0.0584337636679;NHLH1,2:-0.0739143237615;PRDM1:-0.0783423983706;NANOG{mouse}:-0.0917841382165;FOXQ1:-0.0996069677918;RXR{A,B,G}:-0.117196097224;NR5A1,2:-0.146666140294;TBP:-0.147725532717;MTE{core}:-0.163703023328;UFEwm:-0.181700676235;HOX{A6,A7,B6,B7}:-0.186304220281;IKZF1:-0.194079144038;RFX1:-0.197123065766;GFI1B:-0.199441331725;CREB1:-0.213337645825;PITX1..3:-0.237802036042;ESR1:-0.243235938835;HIF1A:-0.256323582863;ZBTB16:-0.256581408608;MYFfamily:-0.282376252305;TEAD1:-0.282766988871;MED-1{core}:-0.30586198246;MTF1:-0.315150362692;MYBL2:-0.332031297777;PAX8:-0.339599785654;NR3C1:-0.34597647418;NFKB1_REL_RELA:-0.352221804446;ATF5_CREB3:-0.385313073613;NR1H4:-0.386344200641;JUN:-0.386808895727;ATF2:-0.389586540194;FOX{F1,F2,J1}:-0.390502112465;XBP1:-0.399198344539;NFE2L2:-0.405101788336;PAX4:-0.409039196052;SOX5:-0.420817969178;GTF2A1,2:-0.433928062115;ZNF423:-0.435199702226;TEF:-0.457377750509;MEF2{A,B,C,D}:-0.47724677945;NKX2-2,8:-0.487320707459;GATA4:-0.502649489008;HSF1,2:-0.510882577073;NKX6-1,2:-0.512112769511;NKX3-2:-0.513337540424;PAX2:-0.513922778429;FOXP1:-0.51501653259;POU1F1:-0.528349717254;FOXP3:-0.534961971787;AHR_ARNT_ARNT2:-0.549725188874;NFE2:-0.551302559948;ZNF148:-0.552481667499;PAX3,7:-0.562609345566;RXRA_VDR{dimer}:-0.5666537364;AR:-0.570410209562;HLF:-0.572592428444;BACH2:-0.587840662624;FOSL2:-0.598583313946;HMGA1,2:-0.622985036726;FOS_FOS{B,L1}_JUN{B,D}:-0.632636751922;SRF:-0.64582599746;RUNX1..3:-0.64798763479;PPARG:-0.666431179909;DMAP1_NCOR{1,2}_SMARC:-0.687809645805;NKX2-1,4:-0.690195713382;SPIB:-0.690516063696;SPI1:-0.692403677986;RFX2..5_RFXANK_RFXAP:-0.697996736659;TFAP2{A,C}:-0.727030536574;HBP1_HMGB_SSRP1_UBTF:-0.754576588163;NKX3-1:-0.762553279775;FOX{D1,D2}:-0.802704450783;FOXO1,3,4:-0.812666294484;ELF1,2,4:-0.823721909852;TFAP4:-0.84513702862;HMX1:-0.890801795811;FOXL1:-0.920493142176;ALX4:-0.927660079845;CEBPA,B_DDIT3:-0.929044238262;BPTF:-0.939299633311;HES1:-0.958056680955;SPZ1:-0.958630693562;ETS1,2:-0.982432861693;NFATC1..3:-0.984868411142;IRF7:-0.99974868577;NFIX:-1.0079611919;NFE2L1:-1.0355009328;DBP:-1.04353518792;TAL1_TCF{3,4,12}:-1.04523272449;TFCP2:-1.04620967626;PAX6:-1.04656003644;NFIL3:-1.05959191907;HOXA9_MEIS1:-1.08363490521;NR6A1:-1.08656924877;ZNF238:-1.11185869729;IRF1,2:-1.17712510189;TLX1..3_NFIC{dimer}:-1.22402687886;TGIF1:-1.27366280436;PDX1:-1.2908126807;GLI1..3:-1.32080405948;GZF1:-1.35946424414;TLX2:-1.37381850624;EP300:-1.40400517453;STAT2,4,6:-1.62841360924;MAFB:-1.73271915509;ATF6:-1.78602876133;SMAD1..7,9:-2.0378695723
 
|top_motifs=OCT4_SOX2{dimer}:2.91492593832;PATZ1:1.84122359712;NANOG:1.80688414608;E2F1..5:1.79188900706;NFY{A,B,C}:1.71512137961;SP1:1.66939253708;SNAI1..3:1.58617313854;SOX{8,9,10}:1.56166671111;TFDP1:1.53820582719;PBX1:1.45120052957;CUX2:1.43666350523;RBPJ:1.40416206376;GFI1:1.37308395121;XCPE1{core}:1.33772979006;POU2F1..3:1.28774056574;LEF1_TCF7_TCF7L1,2:1.23309707367;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.22678905073;ZNF143:1.19175166348;SOX17:1.12742715936;ZEB1:1.12337911659;SOX2:1.09540168773;RORA:1.08363555758;MYOD1:1.02444324128;PAX1,9:1.00981233099;VSX1,2:1.00388588084;MZF1:0.998881693877;T:0.995727873183;NRF1:0.984982297549;EBF1:0.964874305835;ZIC1..3:0.943975490222;YY1:0.914611180662;LMO2:0.834169361626;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.795857151979;MYB:0.789322082194;MAZ:0.781048533627;RREB1:0.746914614131;NKX2-3_NKX2-5:0.745134232783;EN1,2:0.742012798244;bHLH_family:0.718961619292;POU5F1:0.704014233285;ESRRA:0.701105422227;ALX1:0.688044121372;FOXM1:0.67742207211;ONECUT1,2:0.645112053991;BREu{core}:0.629280702459;STAT5{A,B}:0.62022404385;CDC5L:0.605379868681;ELK1,4_GABP{A,B1}:0.575413311968;HOX{A4,D4}:0.564454393339;STAT1,3:0.561282374705;ZFP161:0.560649606401;AIRE:0.53826631603;POU3F1..4:0.451164908661;CRX:0.430154790317;ATF4:0.403258840132;ADNP_IRX_SIX_ZHX:0.396379224698;EVI1:0.39066305929;TOPORS:0.382815959878;ZNF384:0.380289762161;FOXN1:0.364908625527;IKZF2:0.304913700529;KLF4:0.292187678643;HOX{A5,B5}:0.283355236068;PRRX1,2:0.281037269149;PAX5:0.2328958605;HAND1,2:0.232636521639;TFAP2B:0.194559977309;HIC1:0.188021062813;FOXD3:0.17649928009;ARID5B:0.174001160007;GTF2I:0.138870426338;FOXA2:0.137474527443;CDX1,2,4:0.131801050816;HNF4A_NR2F1,2:0.1123440508;TP53:0.0982531068087;FOX{I1,J2}:0.0900983834121;REST:0.0846351681786;ZBTB6:0.0809674340534;GATA6:0.0713923456221;POU6F1:0.0665814672587;SREBF1,2:0.0639028622074;EGR1..3:0.0522352027531;LHX3,4:0.0334578349014;GCM1,2:0.00396272464938;HNF1A:-0.016442295307;TBX4,5:-0.0584337636679;NHLH1,2:-0.0739143237615;PRDM1:-0.0783423983706;NANOG{mouse}:-0.0917841382165;FOXQ1:-0.0996069677918;RXR{A,B,G}:-0.117196097224;NR5A1,2:-0.146666140294;TBP:-0.147725532717;MTE{core}:-0.163703023328;UFEwm:-0.181700676235;HOX{A6,A7,B6,B7}:-0.186304220281;IKZF1:-0.194079144038;RFX1:-0.197123065766;GFI1B:-0.199441331725;CREB1:-0.213337645825;PITX1..3:-0.237802036042;ESR1:-0.243235938835;HIF1A:-0.256323582863;ZBTB16:-0.256581408608;MYFfamily:-0.282376252305;TEAD1:-0.282766988871;MED-1{core}:-0.30586198246;MTF1:-0.315150362692;MYBL2:-0.332031297777;PAX8:-0.339599785654;NR3C1:-0.34597647418;NFKB1_REL_RELA:-0.352221804446;ATF5_CREB3:-0.385313073613;NR1H4:-0.386344200641;JUN:-0.386808895727;ATF2:-0.389586540194;FOX{F1,F2,J1}:-0.390502112465;XBP1:-0.399198344539;NFE2L2:-0.405101788336;PAX4:-0.409039196052;SOX5:-0.420817969178;GTF2A1,2:-0.433928062115;ZNF423:-0.435199702226;TEF:-0.457377750509;MEF2{A,B,C,D}:-0.47724677945;NKX2-2,8:-0.487320707459;GATA4:-0.502649489008;HSF1,2:-0.510882577073;NKX6-1,2:-0.512112769511;NKX3-2:-0.513337540424;PAX2:-0.513922778429;FOXP1:-0.51501653259;POU1F1:-0.528349717254;FOXP3:-0.534961971787;AHR_ARNT_ARNT2:-0.549725188874;NFE2:-0.551302559948;ZNF148:-0.552481667499;PAX3,7:-0.562609345566;RXRA_VDR{dimer}:-0.5666537364;AR:-0.570410209562;HLF:-0.572592428444;BACH2:-0.587840662624;FOSL2:-0.598583313946;HMGA1,2:-0.622985036726;FOS_FOS{B,L1}_JUN{B,D}:-0.632636751922;SRF:-0.64582599746;RUNX1..3:-0.64798763479;PPARG:-0.666431179909;DMAP1_NCOR{1,2}_SMARC:-0.687809645805;NKX2-1,4:-0.690195713382;SPIB:-0.690516063696;SPI1:-0.692403677986;RFX2..5_RFXANK_RFXAP:-0.697996736659;TFAP2{A,C}:-0.727030536574;HBP1_HMGB_SSRP1_UBTF:-0.754576588163;NKX3-1:-0.762553279775;FOX{D1,D2}:-0.802704450783;FOXO1,3,4:-0.812666294484;ELF1,2,4:-0.823721909852;TFAP4:-0.84513702862;HMX1:-0.890801795811;FOXL1:-0.920493142176;ALX4:-0.927660079845;CEBPA,B_DDIT3:-0.929044238262;BPTF:-0.939299633311;HES1:-0.958056680955;SPZ1:-0.958630693562;ETS1,2:-0.982432861693;NFATC1..3:-0.984868411142;IRF7:-0.99974868577;NFIX:-1.0079611919;NFE2L1:-1.0355009328;DBP:-1.04353518792;TAL1_TCF{3,4,12}:-1.04523272449;TFCP2:-1.04620967626;PAX6:-1.04656003644;NFIL3:-1.05959191907;HOXA9_MEIS1:-1.08363490521;NR6A1:-1.08656924877;ZNF238:-1.11185869729;IRF1,2:-1.17712510189;TLX1..3_NFIC{dimer}:-1.22402687886;TGIF1:-1.27366280436;PDX1:-1.2908126807;GLI1..3:-1.32080405948;GZF1:-1.35946424414;TLX2:-1.37381850624;EP300:-1.40400517453;STAT2,4,6:-1.62841360924;MAFB:-1.73271915509;ATF6:-1.78602876133;SMAD1..7,9:-2.0378695723
 
|xref=
 
|xref=
 +
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12822-136I5;search_select_hide=table117:FF:12822-136I5
 
}}
 
}}

Latest revision as of 09:45, 4 June 2020

Name:H9 Embryonic Stem cells, biol_rep3 (H9ES-3)
Species:Human (Homo sapiens)
Library ID:CNhs12837
Sample type:time courses
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueunclassifiable
dev stageNA
sexfemale
ageNA
cell typestem cell
cell lineH9
companyNA
collaborationSusan Zabierowski (Wistar Institute)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005756
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12837 CAGE DRX008587 DRR009459
Accession ID Hg19

Library idBAMCTSS
CNhs12837 DRZ000884 DRZ002269
Accession ID Hg38

Library idBAMCTSS
CNhs12837 DRZ012234 DRZ013619
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.625
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0.124
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0.285
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0.054
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0204
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle--0.0658
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.054
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed--0.205
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte--0.155
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.054
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0.102
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.377
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth--0.00494
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.557
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.054
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0.751
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs12837

Jaspar motif P-value
MA0002.2 0.00141
MA0003.1 0.102
MA0004.1 0.488
MA0006.1 0.655
MA0007.1 0.732
MA0009.1 0.442
MA0014.1 0.427
MA0017.1 0.223
MA0018.2 0.455
MA0019.1 0.445
MA0024.1 3.95351e-6
MA0025.1 0.349
MA0027.1 0.503
MA0028.1 0.0919
MA0029.1 0.615
MA0030.1 0.687
MA0031.1 0.398
MA0035.2 0.596
MA0038.1 5.45714e-4
MA0039.2 0.0419
MA0040.1 0.913
MA0041.1 0.858
MA0042.1 0.801
MA0043.1 0.813
MA0046.1 0.621
MA0047.2 0.109
MA0048.1 0.668
MA0050.1 5.65272e-8
MA0051.1 2.36268e-4
MA0052.1 0.145
MA0055.1 0.123
MA0057.1 0.382
MA0058.1 0.425
MA0059.1 0.779
MA0060.1 1.4231e-15
MA0061.1 0.0162
MA0062.2 0.535
MA0065.2 0.624
MA0066.1 0.31
MA0067.1 0.142
MA0068.1 0.0309
MA0069.1 0.251
MA0070.1 0.0127
MA0071.1 0.99
MA0072.1 0.799
MA0073.1 0.889
MA0074.1 0.583
MA0076.1 0.0686
MA0077.1 0.0488
MA0078.1 0.48
MA0079.2 0.132
MA0080.2 1.37419e-11
MA0081.1 0.0919
MA0083.1 0.0895
MA0084.1 0.55
MA0087.1 0.487
MA0088.1 0.653
MA0090.1 0.277
MA0091.1 0.0141
MA0092.1 0.0476
MA0093.1 0.357
MA0099.2 4.0077e-11
MA0100.1 0.369
MA0101.1 0.13
MA0102.2 0.00262
MA0103.1 0.182
MA0104.2 0.693
MA0105.1 9.89611e-4
MA0106.1 0.451
MA0107.1 0.0662
MA0108.2 0.00496
MA0111.1 0.705
MA0112.2 1.36285e-5
MA0113.1 0.0982
MA0114.1 0.589
MA0115.1 0.403
MA0116.1 0.00753
MA0117.1 0.846
MA0119.1 0.00165
MA0122.1 0.805
MA0124.1 0.803
MA0125.1 0.0101
MA0131.1 0.907
MA0135.1 0.133
MA0136.1 7.92993e-9
MA0137.2 0.41
MA0138.2 0.569
MA0139.1 0.915
MA0140.1 0.432
MA0141.1 0.477
MA0142.1 2.92588e-14
MA0143.1 4.44629e-6
MA0144.1 0.0533
MA0145.1 0.138
MA0146.1 0.216
MA0147.1 0.768
MA0148.1 0.0531
MA0149.1 0.125
MA0150.1 0.00136
MA0152.1 0.496
MA0153.1 0.926
MA0154.1 0.032
MA0155.1 0.845
MA0156.1 0.00275
MA0157.1 0.17
MA0159.1 0.0671
MA0160.1 0.293
MA0162.1 0.594
MA0163.1 1.389e-6
MA0164.1 0.758
MA0258.1 0.0162
MA0259.1 0.755



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs12837

Novel motif P-value
1 0.0914
10 0.0237
100 0.909
101 0.232
102 0.709
103 0.216
104 0.583
105 0.202
106 0.0158
107 0.25
108 0.653
109 0.377
11 0.11
110 0.256
111 0.0181
112 0.221
113 0.0426
114 0.0189
115 0.522
116 0.959
117 0.235
118 0.618
119 0.141
12 0.973
120 0.976
121 0.991
122 0.65
123 0.0948
124 0.132
125 0.815
126 0.673
127 0.719
128 0.43
129 0.378
13 0.605
130 0.0648
131 0.583
132 0.667
133 0.0261
134 0.557
135 0.0256
136 0.2
137 0.355
138 0.248
139 0.00955
14 0.636
140 0.149
141 0.819
142 0.534
143 0.0086
144 0.494
145 0.386
146 0.413
147 0.676
148 6.60288e-4
149 0.0099
15 0.0768
150 0.616
151 0.0808
152 0.367
153 0.235
154 0.198
155 0.815
156 0.795
157 0.962
158 0.447
159 0.499
16 0.274
160 0.246
161 0.886
162 0.62
163 0.472
164 0.212
165 0.267
166 0.705
167 0.0466
168 0.232
169 5.12032e-4
17 0.223
18 0.255
19 0.103
2 0.543
20 0.935
21 0.41
22 0.186
23 0.00971
24 0.822
25 0.399
26 0.212
27 0.445
28 0.842
29 0.771
3 0.0789
30 0.886
31 0.864
32 0.0254
33 0.804
34 0.81
35 0.313
36 0.0585
37 0.238
38 0.279
39 0.506
4 0.99
40 0.704
41 0.192
42 0.241
43 0.111
44 0.901
45 0.699
46 0.0554
47 0.575
48 0.395
49 0.0841
5 0.0875
50 0.874
51 0.761
52 0.43
53 0.184
54 0.364
55 0.0497
56 0.619
57 0.386
58 0.0789
59 0.229
6 0.676
60 0.0776
61 0.903
62 0.0278
63 0.105
64 0.256
65 0.0752
66 0.424
67 0.182
68 0.824
69 0.883
7 0.393
70 0.00848
71 0.0353
72 0.532
73 0.115
74 0.265
75 0.221
76 0.405
77 0.251
78 0.454
79 0.0857
8 0.12
80 0.156
81 0.224
82 0.0301
83 0.88
84 0.816
85 0.0216
86 0.534
87 0.262
88 0.549
89 0.132
9 0.219
90 0.24
91 0.15
92 0.0314
93 0.528
94 0.0531
95 0.848
96 0.0361
97 0.719
98 0.305
99 0.622



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs12837


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002321 (embryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002322 (embryonic stem cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101581 (embryonic stem cell line sample)
0000343 (control treatment sample)
0000350 (experimentally modified sample)
0000400 (H9 embryonic stem cell line sample)
0100669 (embryonic cell line sample)
0000592 (human H9 Embryonic Stem cells sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

NA