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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004843
|DRA_sample_Accession=CAGE@SAMD00004843
|accession_numbers=CAGE;DRX008606;DRR009478;DRZ000903;DRZ002288
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004843
|accession_numbers=CAGE;DRX008606;DRR009478;DRZ000903;DRZ002288;DRZ012253;DRZ013638
|accession_numbers_RNASeq=sRNA-Seq;DRX036541;DRR040595;DRZ006960
|ancestors_in_anatomy_facet=UBERON:0001013,UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_anatomy_facet=UBERON:0001013,UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002570
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002570
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|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=1
|data_phase=2
|datafreeze_phase=1
|datafreeze_phase=2
|def=
|def=
|donor= biol_rep2
|expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!2.03!120.53!PRRX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.95!87.91!HOXC5;;chr7:19157248..19157268,-!p1@TWIST1!1.76!150.06!TWIST1;;chr1:170633348..170633399,+!p2@PRRX1!1.73!71.43!PRRX1;;chr9:132427883..132427951,+!p2@PRRX2!1.69!48.08!PRRX2;;chr1:170633262..170633285,+!p3@PRRX1!1.62!46.02!PRRX1;;chr15:57511609..57511651,+!p2@TCF12!1.59!63.18!TCF12;;chr12:54402745..54402788,+!p1@HOXC8!1.51!31.59!HOXC8;;chr2:239756671..239756732,+!p1@TWIST2!1.49!93.75!TWIST2;;chr19:13134772..13134822,+!p2@NFIX!1.48!42.92!NFIX;;chr9:132427972..132428056,+!p1@PRRX2!1.48!38.12!PRRX2;;chr1:170632477..170632506,+!p6@PRRX1!1.46!28.16!PRRX1;;chr11:46299199..46299233,+!p1@CREB3L1!1.45!137.01!CREB3L1;;chr12:54393880..54393962,+!p1@HOXC9!1.45!27.47!HOXC9;;chr1:170632959..170632987,+!p4@PRRX1!1.42!27.82!PRRX1;;chr17:1959369..1959388,+!p2@HIC1!1.40!62.84!HIC1;;chr10:119303078..119303169,+!p2@EMX2!1.38!23.01!EMX2;;chr1:170633058..170633084,+!p5@PRRX1!1.36!21.98!PRRX1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.33!20.26!HOXC5;;chr2:119605214..119605230,-!p1@EN1!1.27!17.51!EN1;;chr10:131762504..131762555,-!p1@EBF3!1.24!16.48!EBF3;;chr2:239756739..239756755,+!p2@TWIST2!1.22!26.78!TWIST2;;chr7:15726296..15726315,-!p1@MEOX2!1.20!14.77!MEOX2;;chr11:46299539..46299620,+!p2@CREB3L1!1.18!24.04!CREB3L1;;chr1:170632723..170632739,+!p8@PRRX1!1.18!14.08!PRRX1;;chr8:25902876..25902936,-!p1@EBF2!1.17!13.74!EBF2;;chr4:174450089..174450153,-!p2@HAND2!1.14!12.71!HAND2;;chr1:170632683..170632696,+!p12@PRRX1!1.10!11.68!PRRX1;;chr1:170632439..170632465,+!p11@PRRX1!1.08!10.99!PRRX1;;chr4:174451370..174451387,-!p1@HAND2!1.08!10.99!HAND2;;chr6:1312325..1312340,+!p1@FOXQ1!1.07!17.51!FOXQ1;;chr5:72744594..72744609,-!p1@FOXD1!1.06!48.42!FOXD1;;chrY:21906594..21906622,-!p1@KDM5D!1.05!10.30!KDM5D;;chr12:54378923..54378966,+!p1@HOXC10!1.04!9.96!HOXC10;;chr12:54379029..54379057,+!p2@HOXC10!1.04!9.96!HOXC10;;chr8:49833948..49833973,-!p2@SNAI2!1.03!63.18!SNAI2;;chr12:54402790..54402805,+!p2@HOXC8!1.03!9.62!HOXC8;;chr6:45296048..45296082,+!p1@RUNX2!1.02!10.99!RUNX2;;chr18:53068911..53068935,-!p4@TCF4!1.02!10.65!TCF4;;chr7:19157043..19157088,-!p2@TWIST1!1.01!23.35!TWIST1;;chr14:24837368..24837401,+!p1@NFATC4!1.01!21.98!NFATC4;;chr17:46682321..46682362,-!p1@HOXB6!1.01!9.27!HOXB6;;chr12:53614115..53614154,-!p1@RARG!1.00!49.11!RARG;;chr1:170632250..170632277,+!p7@PRRX1!1.00!8.93!PRRX1;;chr8:49833978..49833996,-!p1@SNAI2!0.98!179.60!SNAI2;;chr6:1389789..1389821,+!p1@FOXF2!0.98!12.02!FOXF2;;chr7:27192185..27192209,-!p1@HOXA3!0.98!8.58!HOXA3;;chr1:170632137..170632172,+!p10@PRRX1!0.97!8.24!PRRX1;;chr10:119302645..119302712,+!p3@EMX2!0.97!8.24!EMX2;;chr5:321810..321877,+!p1@AHRR!0.96!26.44!AHRR;;chr10:119302508..119302559,+!p5@EMX2!0.95!7.90!EMX2;;chr7:44143925..44143970,+!p1@AEBP1!0.93!172.73!AEBP1;;chr19:13134457..13134462,+!p5@NFIX!0.93!13.74!NFIX;;chr15:57511589..57511608,+!p4@TCF12!0.93!7.55!TCF12;;chr19:50432453..50432468,+!p1@ATF5!0.92!428.21!ATF5;;chr8:77593474..77593612,+!p1@ZFHX4!0.92!31.94!ZFHX4;;chr18:72922743..72922761,+!p3@TSHZ1!0.92!25.07!TSHZ1;;chr7:15726243..15726293,-!p2@MEOX2!0.91!7.21!MEOX2;;chr2:176994408..176994492,+!p1@HOXD8!0.91!7.21!HOXD8;;chr17:1958388..1958404,+!p1@HIC1!0.90!46.70!HIC1;;chr5:158526917..158526932,-!p1@EBF1!0.90!17.86!EBF1;;chr5:142780237..142780261,-!p7@NR3C1!0.90!6.87!NR3C1;;chr4:111558135..111558198,-!p2@PITX2!0.90!6.87!PITX2;;chr18:22932080..22932170,-!p1@ZNF521!0.89!30.22!ZNF521;;chr7:42276787..42276815,-!p1@GLI3!0.88!18.54!GLI3;;chr16:54320646..54320672,-!p2@IRX3!0.88!10.30!IRX3;;chr15:37390482..37390572,-!p7@MEIS2!0.88!9.27!MEIS2;;chr14:61116183..61116208,-!p1@SIX1!0.87!25.75!SIX1;;chr1:170632762..170632786,+!p13@PRRX1!0.86!6.18!PRRX1;;chr17:46621937..46621966,-!p2@HOXB2!0.85!17.17!HOXB2;;chr17:46687959..46688007,-!p2@HOXB7!0.83!8.24!HOXB7;;chr5:158526459..158526481,-!p2@EBF1!0.83!7.90!EBF1;;chr19:13135582..13135600,+!p3@NFIX!0.83!5.84!NFIX;;chr19:47523058..47523114,+!p1@NPAS1!0.83!5.84!NPAS1;;chr1:170632310..170632321,+!p15@PRRX1!0.83!5.84!PRRX1;;chr12:54380404..54380433,+!p3@HOXC10!0.83!5.84!HOXC10;;chr10:119302232..119302265,+!p1@EMX2!0.81!5.49!EMX2;;chr12:54410948..54410992,+!p3@HOXC5!0.81!5.49!HOXC5;;chr17:46132044..46132080,+!p4@NFE2L1!0.81!5.49!NFE2L1;;chr2:19558373..19558392,-!p1@OSR1!0.80!15.45!OSR1;;chr5:2751762..2751784,-!p1@IRX2!0.79!5.15!IRX2;;chr1:170632115..170632136,+!p9@PRRX1!0.79!5.15!PRRX1;;chr1:170632647..170632659,+!p17@PRRX1!0.79!5.15!PRRX1;;chr1:158979792..158979814,+!p2@IFI16!0.78!52.88!IFI16;;chr2:208030647..208030689,-!p1@KLF7!0.78!45.67!KLF7;;chr1:23696308..23696339,-!p2@ZNF436!0.78!11.33!ZNF436;;chr19:13106214..13106382,+!p1@NFIX!0.77!125.00!NFIX;;chr10:77161504..77161530,-!p1@ZNF503!0.77!71.08!ZNF503;;chr16:54320617..54320643,-!p3@IRX3!0.77!6.52!IRX3;;chr8:99956662..99956684,+!p1@OSR2!0.76!7.55!OSR2;;chr7:27205136..27205164,-!p1@HOXA9!0.76!4.81!HOXA9;;chr16:31076332..31076388,-!p3@ZNF668!0.76!4.81!ZNF668;;chr19:13135386..13135435,+!p4@NFIX!0.76!4.81!NFIX;;chr10:31610110..31610159,+!p2@ZEB1!0.76!4.81!ZEB1;;chr12:54402729..54402743,+!p3@HOXC8!0.76!4.81!HOXC8;;chr1:170632907..170632916,+!p22@PRRX1!0.76!4.81!PRRX1;;chr1:158979872..158979898,+!p3@IFI16!0.75!15.45!IFI16;;chr7:44143978..44143989,+!p2@AEBP1!0.75!8.93!AEBP1;;chr16:54320101..54320125,-!p4@IRX3!0.75!6.87!IRX3;;chr5:142780189..142780223,-!p6@NR3C1!0.74!4.46!NR3C1;;chr7:27196267..27196311,-!p1@HOXA7!0.74!4.46!HOXA7;;chr7:27205106..27205134,-!p2@HOXA9!0.74!4.46!HOXA9;;chr2:102091566..102091581,-!p1@RFX8!0.74!4.46!RFX8;;chr2:119604456..119604501,-!p2@EN1!0.74!4.46!EN1;;chr2:177001290..177001315,+!p1@HOXD3!0.74!4.46!HOXD3;;chr4:111544219..111544240,-!p1@PITX2!0.74!4.46!PITX2;;chr1:170632867..170632878,+!p21@PRRX1!0.74!4.46!PRRX1;;chr10:63809013..63809041,+!p3@ARID5B!0.73!27.13!ARID5B;;chr2:85980951..85981004,+!p1@ATOH8!0.73!7.55!ATOH8;;chr17:46688334..46688385,-!p1@HOXB7!0.73!6.52!HOXB7;;chr20:30193083..30193098,+!p1@ID1!0.72!389.41!ID1;;chr9:110252035..110252057,-!p1@KLF4!0.72!75.89!KLF4;;chr18:72922811..72922827,+!p1@TSHZ1!0.72!23.69!TSHZ1;;chr11:65687362..65687436,+!p3@DRAP1!0.71!20.95!DRAP1;;chr5:133450365..133450444,+!p1@TCF7!0.71!20.95!TCF7;;chr7:44143997..44144008,+!p3@AEBP1!0.71!5.49!AEBP1;;chr1:170633245..170633256,+!p14@PRRX1!0.71!4.12!PRRX1;;chr2:85981107..85981120,+!p3@ATOH8!0.71!4.12!ATOH8;;chrY:2803415..2803468,+!p1@ZFY!0.71!4.12!ZFY;;chr12:66218598..66218645,+!p2@HMGA2!0.70!20.95!HMGA2;;chr4:4861385..4861398,+!p1@MSX1!0.70!13.05!MSX1;;chr20:51588873..51588953,+!p1@TSHZ2!0.70!5.49!TSHZ2;;chr1:23696448..23696453,-!p5@ZNF436!0.70!5.15!ZNF436;;chr10:63809106..63809127,+!p1@ARID5B!0.69!59.75!ARID5B;;chr8:106330656..106330684,+!p1@ZFPM2!0.69!11.33!ZFPM2;;chr15:37390850..37390909,-!p3@MEIS2!0.69!8.24!MEIS2;;chr11:65686802..65686818,+!p6@DRAP1!0.69!7.21!DRAP1;;chr15:96876966..96877017,+!p12@NR2F2!0.69!5.84!NR2F2;;chr11:46299186..46299195,+!p3@CREB3L1!0.69!4.46!CREB3L1;;chr20:39317868..39317884,-!p1@MAFB!0.68!51.85!MAFB;;chr3:150126759..150126784,+!p2@TSC22D2!0.68!19.57!TSC22D2;;chr10:77161133..77161176,-!p3@ZNF503!0.68!8.93!ZNF503;;chr15:42749722..42749739,-!p2@ZFP106!0.68!7.21!ZFP106;;chr19:45260775..45260838,+!p5@BCL3!0.68!5.15!BCL3;;chr17:46675558..46675577,-!p2@HOXB6!0.68!3.78!HOXB6;;chr10:63853436..63853442,+!p4@ARID5B!0.67!22.66!ARID5B;;chr11:65686732..65686756,+!p2@DRAP1!0.67!17.51!DRAP1;;chr10:77161650..77161661,-!p4@ZNF503!0.67!5.49!ZNF503;;chr19:13136241..13136258,+!p7@NFIX!0.67!5.15!NFIX;;chr5:72744562..72744573,-!p3@FOXD1!0.67!4.81!FOXD1;;chr14:75894714..75894733,+!p1@JDP2!0.66!117.10!JDP2;;chr6:144329384..144329405,-!p1@PLAGL1!0.66!48.76!PLAGL1;;chr11:65687222..65687240,+!p7@DRAP1!0.66!4.81!DRAP1;;chr8:22550982..22550999,-!p1@EGR3!0.65!10.99!EGR3;;chr15:96874145..96874166,+!p7@NR2F2!0.65!7.21!NR2F2;;chr9:110251836..110251887,-!p4@KLF4!0.65!4.81!KLF4;;chr11:46299443..46299459,+!p4@CREB3L1!0.65!3.43!CREB3L1;;chr12:53625846..53625861,-!p6@RARG!0.65!3.43!RARG;;chr12:54422217..54422239,+!p3@HOXC6!0.65!3.43!HOXC6;;chr1:158979922..158979933,+!p13@IFI16!0.65!3.43!IFI16;;chr1:170632325..170632339,+!p24@PRRX1!0.65!3.43!PRRX1;;chr2:119605253..119605264,-!p5@EN1!0.65!3.43!EN1;;chr3:21792790..21792824,-!p4@ZNF385D!0.65!3.43!ZNF385D;;chr2:8822176..8822196,+!p1@ID2!0.64!558.02!ID2;;chr1:164528410..164528428,+!p1@PBX1!0.64!29.53!PBX1;;chr11:65687158..65687216,+!p4@DRAP1!0.64!22.66!DRAP1;;chr15:37392724..37392757,-!p1@MEIS2!0.64!17.86!MEIS2;;chr3:21792585..21792625,-!p2@ZNF385D!0.64!3.78!ZNF385D;;chr1:23885981..23886002,-!p1@ID3!0.63!678.89!ID3;;chr14:62162258..62162269,+!p2@HIF1A!0.63!37.09!HIF1A;;chr12:115121962..115121987,-!p1@TBX3!0.63!32.28!TBX3;;chr3:114343768..114343822,-!p1@ZBTB20!0.63!16.48!ZBTB20;;chr16:54320675..54320715,-!p1@IRX3!0.63!7.90!IRX3;;chr8:72756667..72756736,-!p2@MSC!0.63!5.49!MSC;;chr9:16870659..16870675,-!p2@BNC2!0.63!4.12!BNC2;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.62!38.12!GLIS2;;chr14:62162285..62162296,+!p3@HIF1A!0.62!19.23!HIF1A;;chr16:86600426..86600441,+!p1@FOXC2!0.62!8.93!FOXC2;;chr6:144289132..144289134,-!p3@PLAGL1!0.62!8.24!PLAGL1;;chr1:158979851..158979865,+!p5@IFI16!0.62!7.90!IFI16;;chr17:46675420..46675465,-!p3@HOXB6!0.62!3.78!HOXB6;;chr15:96873984..96873999,+!p3@NR2F2!0.61!27.13!NR2F2;;chr1:200379104..200379128,-!p2@ZNF281!0.61!8.58!ZNF281;;chr14:64971014..64971044,+!p4@ZBTB1!0.61!5.49!ZBTB1;;chr15:37391588..37391604,-!p11@MEIS2!0.61!4.12!MEIS2;;chr17:46687935..46687950,-!p3@HOXB7!0.61!3.09!HOXB7;;chr17:46690839..46690884,-!p1@HOXB8!0.61!3.09!HOXB8;;chr1:170633194..170633205,+!p18@PRRX1!0.61!3.09!PRRX1;;chr8:93115584..93115642,-!p5@RUNX1T1!0.61!3.09!RUNX1T1;;chr2:85981073..85981091,+!p5@ATOH8!0.61!3.09!ATOH8;;chr15:96874012..96874042,+!p2@NR2F2!0.60!32.28!NR2F2;;chr5:72744445..72744466,-!p2@FOXD1!0.60!5.49!FOXD1;;chr7:42276822..42276895,-!p2@GLI3!0.59!9.96!GLI3;;chr12:53625966..53626012,-!p2@RARG!0.59!8.93!RARG;;chr15:37392703..37392717,-!p8@MEIS2!0.59!4.46!MEIS2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.58!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|expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!2.03!120.53!PRRX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.95!87.91!HOXC5;;chr7:19157248..19157268,-!p1@TWIST1!1.76!150.06!TWIST1;;chr1:170633348..170633399,+!p2@PRRX1!1.73!71.43!PRRX1;;chr9:132427883..132427951,+!p2@PRRX2!1.69!48.08!PRRX2;;chr1:170633262..170633285,+!p3@PRRX1!1.62!46.02!PRRX1;;chr15:57511609..57511651,+!p2@TCF12!1.59!63.18!TCF12;;chr12:54402745..54402788,+!p1@HOXC8!1.51!31.59!HOXC8;;chr2:239756671..239756732,+!p1@TWIST2!1.49!93.75!TWIST2;;chr19:13134772..13134822,+!p2@NFIX!1.48!42.92!NFIX;;chr9:132427972..132428056,+!p1@PRRX2!1.48!38.12!PRRX2;;chr1:170632477..170632506,+!p6@PRRX1!1.46!28.16!PRRX1;;chr11:46299199..46299233,+!p1@CREB3L1!1.45!137.01!CREB3L1;;chr12:54393880..54393962,+!p1@HOXC9!1.45!27.47!HOXC9;;chr1:170632959..170632987,+!p4@PRRX1!1.42!27.82!PRRX1;;chr17:1959369..1959388,+!p2@HIC1!1.40!62.84!HIC1;;chr10:119303078..119303169,+!p2@EMX2!1.38!23.01!EMX2;;chr1:170633058..170633084,+!p5@PRRX1!1.36!21.98!PRRX1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.33!20.26!HOXC5;;chr2:119605214..119605230,-!p1@EN1!1.27!17.51!EN1;;chr10:131762504..131762555,-!p1@EBF3!1.24!16.48!EBF3;;chr2:239756739..239756755,+!p2@TWIST2!1.22!26.78!TWIST2;;chr7:15726296..15726315,-!p1@MEOX2!1.20!14.77!MEOX2;;chr11:46299539..46299620,+!p2@CREB3L1!1.18!24.04!CREB3L1;;chr1:170632723..170632739,+!p8@PRRX1!1.18!14.08!PRRX1;;chr8:25902876..25902936,-!p1@EBF2!1.17!13.74!EBF2;;chr4:174450089..174450153,-!p2@HAND2!1.14!12.71!HAND2;;chr1:170632683..170632696,+!p12@PRRX1!1.10!11.68!PRRX1;;chr1:170632439..170632465,+!p11@PRRX1!1.08!10.99!PRRX1;;chr4:174451370..174451387,-!p1@HAND2!1.08!10.99!HAND2;;chr6:1312325..1312340,+!p1@FOXQ1!1.07!17.51!FOXQ1;;chr5:72744594..72744609,-!p1@FOXD1!1.06!48.42!FOXD1;;chrY:21906594..21906622,-!p1@KDM5D!1.05!10.30!KDM5D;;chr12:54378923..54378966,+!p1@HOXC10!1.04!9.96!HOXC10;;chr12:54379029..54379057,+!p2@HOXC10!1.04!9.96!HOXC10;;chr8:49833948..49833973,-!p2@SNAI2!1.03!63.18!SNAI2;;chr12:54402790..54402805,+!p2@HOXC8!1.03!9.62!HOXC8;;chr6:45296048..45296082,+!p1@RUNX2!1.02!10.99!RUNX2;;chr18:53068911..53068935,-!p4@TCF4!1.02!10.65!TCF4;;chr7:19157043..19157088,-!p2@TWIST1!1.01!23.35!TWIST1;;chr14:24837368..24837401,+!p1@NFATC4!1.01!21.98!NFATC4;;chr17:46682321..46682362,-!p1@HOXB6!1.01!9.27!HOXB6;;chr12:53614115..53614154,-!p1@RARG!1.00!49.11!RARG;;chr1:170632250..170632277,+!p7@PRRX1!1.00!8.93!PRRX1;;chr8:49833978..49833996,-!p1@SNAI2!0.98!179.60!SNAI2;;chr6:1389789..1389821,+!p1@FOXF2!0.98!12.02!FOXF2;;chr7:27192185..27192209,-!p1@HOXA3!0.98!8.58!HOXA3;;chr1:170632137..170632172,+!p10@PRRX1!0.97!8.24!PRRX1;;chr10:119302645..119302712,+!p3@EMX2!0.97!8.24!EMX2;;chr5:321810..321877,+!p1@AHRR!0.96!26.44!AHRR;;chr10:119302508..119302559,+!p5@EMX2!0.95!7.90!EMX2;;chr7:44143925..44143970,+!p1@AEBP1!0.93!172.73!AEBP1;;chr19:13134457..13134462,+!p5@NFIX!0.93!13.74!NFIX;;chr15:57511589..57511608,+!p4@TCF12!0.93!7.55!TCF12;;chr19:50432453..50432468,+!p1@ATF5!0.92!428.21!ATF5;;chr8:77593474..77593612,+!p1@ZFHX4!0.92!31.94!ZFHX4;;chr18:72922743..72922761,+!p3@TSHZ1!0.92!25.07!TSHZ1;;chr7:15726243..15726293,-!p2@MEOX2!0.91!7.21!MEOX2;;chr2:176994408..176994492,+!p1@HOXD8!0.91!7.21!HOXD8;;chr17:1958388..1958404,+!p1@HIC1!0.90!46.70!HIC1;;chr5:158526917..158526932,-!p1@EBF1!0.90!17.86!EBF1;;chr5:142780237..142780261,-!p7@NR3C1!0.90!6.87!NR3C1;;chr4:111558135..111558198,-!p2@PITX2!0.90!6.87!PITX2;;chr18:22932080..22932170,-!p1@ZNF521!0.89!30.22!ZNF521;;chr7:42276787..42276815,-!p1@GLI3!0.88!18.54!GLI3;;chr16:54320646..54320672,-!p2@IRX3!0.88!10.30!IRX3;;chr15:37390482..37390572,-!p7@MEIS2!0.88!9.27!MEIS2;;chr14:61116183..61116208,-!p1@SIX1!0.87!25.75!SIX1;;chr1:170632762..170632786,+!p13@PRRX1!0.86!6.18!PRRX1;;chr17:46621937..46621966,-!p2@HOXB2!0.85!17.17!HOXB2;;chr17:46687959..46688007,-!p2@HOXB7!0.83!8.24!HOXB7;;chr5:158526459..158526481,-!p2@EBF1!0.83!7.90!EBF1;;chr19:13135582..13135600,+!p3@NFIX!0.83!5.84!NFIX;;chr19:47523058..47523114,+!p1@NPAS1!0.83!5.84!NPAS1;;chr1:170632310..170632321,+!p15@PRRX1!0.83!5.84!PRRX1;;chr12:54380404..54380433,+!p3@HOXC10!0.83!5.84!HOXC10;;chr10:119302232..119302265,+!p1@EMX2!0.81!5.49!EMX2;;chr12:54410948..54410992,+!p3@HOXC5!0.81!5.49!HOXC5;;chr17:46132044..46132080,+!p4@NFE2L1!0.81!5.49!NFE2L1;;chr2:19558373..19558392,-!p1@OSR1!0.80!15.45!OSR1;;chr5:2751762..2751784,-!p1@IRX2!0.79!5.15!IRX2;;chr1:170632115..170632136,+!p9@PRRX1!0.79!5.15!PRRX1;;chr1:170632647..170632659,+!p17@PRRX1!0.79!5.15!PRRX1;;chr1:158979792..158979814,+!p2@IFI16!0.78!52.88!IFI16;;chr2:208030647..208030689,-!p1@KLF7!0.78!45.67!KLF7;;chr1:23696308..23696339,-!p2@ZNF436!0.78!11.33!ZNF436;;chr19:13106214..13106382,+!p1@NFIX!0.77!125.00!NFIX;;chr10:77161504..77161530,-!p1@ZNF503!0.77!71.08!ZNF503;;chr16:54320617..54320643,-!p3@IRX3!0.77!6.52!IRX3;;chr8:99956662..99956684,+!p1@OSR2!0.76!7.55!OSR2;;chr7:27205136..27205164,-!p1@HOXA9!0.76!4.81!HOXA9;;chr16:31076332..31076388,-!p3@ZNF668!0.76!4.81!ZNF668;;chr19:13135386..13135435,+!p4@NFIX!0.76!4.81!NFIX;;chr10:31610110..31610159,+!p2@ZEB1!0.76!4.81!ZEB1;;chr12:54402729..54402743,+!p3@HOXC8!0.76!4.81!HOXC8;;chr1:170632907..170632916,+!p22@PRRX1!0.76!4.81!PRRX1;;chr1:158979872..158979898,+!p3@IFI16!0.75!15.45!IFI16;;chr7:44143978..44143989,+!p2@AEBP1!0.75!8.93!AEBP1;;chr16:54320101..54320125,-!p4@IRX3!0.75!6.87!IRX3;;chr5:142780189..142780223,-!p6@NR3C1!0.74!4.46!NR3C1;;chr7:27196267..27196311,-!p1@HOXA7!0.74!4.46!HOXA7;;chr7:27205106..27205134,-!p2@HOXA9!0.74!4.46!HOXA9;;chr2:102091566..102091581,-!p1@RFX8!0.74!4.46!RFX8;;chr2:119604456..119604501,-!p2@EN1!0.74!4.46!EN1;;chr2:177001290..177001315,+!p1@HOXD3!0.74!4.46!HOXD3;;chr4:111544219..111544240,-!p1@PITX2!0.74!4.46!PITX2;;chr1:170632867..170632878,+!p21@PRRX1!0.74!4.46!PRRX1;;chr10:63809013..63809041,+!p3@ARID5B!0.73!27.13!ARID5B;;chr2:85980951..85981004,+!p1@ATOH8!0.73!7.55!ATOH8;;chr17:46688334..46688385,-!p1@HOXB7!0.73!6.52!HOXB7;;chr20:30193083..30193098,+!p1@ID1!0.72!389.41!ID1;;chr9:110252035..110252057,-!p1@KLF4!0.72!75.89!KLF4;;chr18:72922811..72922827,+!p1@TSHZ1!0.72!23.69!TSHZ1;;chr11:65687362..65687436,+!p3@DRAP1!0.71!20.95!DRAP1;;chr5:133450365..133450444,+!p1@TCF7!0.71!20.95!TCF7;;chr7:44143997..44144008,+!p3@AEBP1!0.71!5.49!AEBP1;;chr1:170633245..170633256,+!p14@PRRX1!0.71!4.12!PRRX1;;chr2:85981107..85981120,+!p3@ATOH8!0.71!4.12!ATOH8;;chrY:2803415..2803468,+!p1@ZFY!0.71!4.12!ZFY;;chr12:66218598..66218645,+!p2@HMGA2!0.70!20.95!HMGA2;;chr4:4861385..4861398,+!p1@MSX1!0.70!13.05!MSX1;;chr20:51588873..51588953,+!p1@TSHZ2!0.70!5.49!TSHZ2;;chr1:23696448..23696453,-!p5@ZNF436!0.70!5.15!ZNF436;;chr10:63809106..63809127,+!p1@ARID5B!0.69!59.75!ARID5B;;chr8:106330656..106330684,+!p1@ZFPM2!0.69!11.33!ZFPM2;;chr15:37390850..37390909,-!p3@MEIS2!0.69!8.24!MEIS2;;chr11:65686802..65686818,+!p6@DRAP1!0.69!7.21!DRAP1;;chr15:96876966..96877017,+!p12@NR2F2!0.69!5.84!NR2F2;;chr11:46299186..46299195,+!p3@CREB3L1!0.69!4.46!CREB3L1;;chr20:39317868..39317884,-!p1@MAFB!0.68!51.85!MAFB;;chr3:150126759..150126784,+!p2@TSC22D2!0.68!19.57!TSC22D2;;chr10:77161133..77161176,-!p3@ZNF503!0.68!8.93!ZNF503;;chr15:42749722..42749739,-!p2@ZFP106!0.68!7.21!ZFP106;;chr19:45260775..45260838,+!p5@BCL3!0.68!5.15!BCL3;;chr17:46675558..46675577,-!p2@HOXB6!0.68!3.78!HOXB6;;chr10:63853436..63853442,+!p4@ARID5B!0.67!22.66!ARID5B;;chr11:65686732..65686756,+!p2@DRAP1!0.67!17.51!DRAP1;;chr10:77161650..77161661,-!p4@ZNF503!0.67!5.49!ZNF503;;chr19:13136241..13136258,+!p7@NFIX!0.67!5.15!NFIX;;chr5:72744562..72744573,-!p3@FOXD1!0.67!4.81!FOXD1;;chr14:75894714..75894733,+!p1@JDP2!0.66!117.10!JDP2;;chr6:144329384..144329405,-!p1@PLAGL1!0.66!48.76!PLAGL1;;chr11:65687222..65687240,+!p7@DRAP1!0.66!4.81!DRAP1;;chr8:22550982..22550999,-!p1@EGR3!0.65!10.99!EGR3;;chr15:96874145..96874166,+!p7@NR2F2!0.65!7.21!NR2F2;;chr9:110251836..110251887,-!p4@KLF4!0.65!4.81!KLF4;;chr11:46299443..46299459,+!p4@CREB3L1!0.65!3.43!CREB3L1;;chr12:53625846..53625861,-!p6@RARG!0.65!3.43!RARG;;chr12:54422217..54422239,+!p3@HOXC6!0.65!3.43!HOXC6;;chr1:158979922..158979933,+!p13@IFI16!0.65!3.43!IFI16;;chr1:170632325..170632339,+!p24@PRRX1!0.65!3.43!PRRX1;;chr2:119605253..119605264,-!p5@EN1!0.65!3.43!EN1;;chr3:21792790..21792824,-!p4@ZNF385D!0.65!3.43!ZNF385D;;chr2:8822176..8822196,+!p1@ID2!0.64!558.02!ID2;;chr1:164528410..164528428,+!p1@PBX1!0.64!29.53!PBX1;;chr11:65687158..65687216,+!p4@DRAP1!0.64!22.66!DRAP1;;chr15:37392724..37392757,-!p1@MEIS2!0.64!17.86!MEIS2;;chr3:21792585..21792625,-!p2@ZNF385D!0.64!3.78!ZNF385D;;chr1:23885981..23886002,-!p1@ID3!0.63!678.89!ID3;;chr14:62162258..62162269,+!p2@HIF1A!0.63!37.09!HIF1A;;chr12:115121962..115121987,-!p1@TBX3!0.63!32.28!TBX3;;chr3:114343768..114343822,-!p1@ZBTB20!0.63!16.48!ZBTB20;;chr16:54320675..54320715,-!p1@IRX3!0.63!7.90!IRX3;;chr8:72756667..72756736,-!p2@MSC!0.63!5.49!MSC;;chr9:16870659..16870675,-!p2@BNC2!0.63!4.12!BNC2;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.62!38.12!GLIS2;;chr14:62162285..62162296,+!p3@HIF1A!0.62!19.23!HIF1A;;chr16:86600426..86600441,+!p1@FOXC2!0.62!8.93!FOXC2;;chr6:144289132..144289134,-!p3@PLAGL1!0.62!8.24!PLAGL1;;chr1:158979851..158979865,+!p5@IFI16!0.62!7.90!IFI16;;chr17:46675420..46675465,-!p3@HOXB6!0.62!3.78!HOXB6;;chr15:96873984..96873999,+!p3@NR2F2!0.61!27.13!NR2F2;;chr1:200379104..200379128,-!p2@ZNF281!0.61!8.58!ZNF281;;chr14:64971014..64971044,+!p4@ZBTB1!0.61!5.49!ZBTB1;;chr15:37391588..37391604,-!p11@MEIS2!0.61!4.12!MEIS2;;chr17:46687935..46687950,-!p3@HOXB7!0.61!3.09!HOXB7;;chr17:46690839..46690884,-!p1@HOXB8!0.61!3.09!HOXB8;;chr1:170633194..170633205,+!p18@PRRX1!0.61!3.09!PRRX1;;chr8:93115584..93115642,-!p5@RUNX1T1!0.61!3.09!RUNX1T1;;chr2:85981073..85981091,+!p5@ATOH8!0.61!3.09!ATOH8;;chr15:96874012..96874042,+!p2@NR2F2!0.60!32.28!NR2F2;;chr5:72744445..72744466,-!p2@FOXD1!0.60!5.49!FOXD1;;chr7:42276822..42276895,-!p2@GLI3!0.59!9.96!GLI3;;chr12:53625966..53626012,-!p2@RARG!0.59!8.93!RARG;;chr15:37392703..37392717,-!p8@MEIS2!0.59!4.46!MEIS2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.58!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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002570
|ffid_belonging_in_development=CL:0000134
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
Line 41: Line 45:
|fonse_treatment_closure=EFO:0000369,FF:0000329,FF:0000690,FF:13230-141I8
|fonse_treatment_closure=EFO:0000369,FF:0000329,FF:0000690,FF:13230-141I8
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/mesenchymal%2520stem%2520cells%2520%2528adipose%2520derived%2529%252c%2520adipogenic%2520induction%252c%252000hr00min%252c%2520biol_rep2.CNhs13420.13230-141I8.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/mesenchymal%2520stem%2520cells%2520%2528adipose%2520derived%2529%252c%2520adipogenic%2520induction%252c%252000hr00min%252c%2520biol_rep2.CNhs13420.13230-141I8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/mesenchymal%2520stem%2520cells%2520%2528adipose%2520derived%2529%252c%2520adipogenic%2520induction%252c%252000hr00min%252c%2520biol_rep2.CNhs13420.13230-141I8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/mesenchymal%2520stem%2520cells%2520%2528adipose%2520derived%2529%252c%2520adipogenic%2520induction%252c%252000hr00min%252c%2520biol_rep2.CNhs13420.13230-141I8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/mesenchymal%2520stem%2520cells%2520%2528adipose%2520derived%2529%252c%2520adipogenic%2520induction%252c%252000hr00min%252c%2520biol_rep2.CNhs13420.13230-141I8.hg38.nobarcode.ctss.bed.gz
|id=FF:13230-141I8
|id=FF:13230-141I8
|is_a=EFO:0002091;;FF:0000690
|is_a=EFO:0002091;;FF:0000690
|is_obsolete=
|is_obsolete=
|library_id=CNhs13420
|library_id=CNhs13420
|library_id_phase_based=1:CNhs13420
|library_id_phase_based=2:CNhs13420
|name=mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep2
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;13230
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10064.GAGTGG.13230
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;13230
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10064.GAGTGG.13230
|name=mesenchymal stem cells (adipose derived), adipogenic induction
|namespace=FANTOM5
|namespace=FANTOM5
|part_of=
|part_of=
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs13420,LSID1023,release014,COMPLETED
|profile_hcage=CNhs13420,LSID1023,release014,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 66: Line 82:
|rna_sample_type=
|rna_sample_type=
|rna_tube_id=141I8
|rna_tube_id=141I8
|rna_weight_ug=5.00
|rna_weight_ug=5
|rnaseq_library_id=SRhi10064.GAGTGG
|sample_age=16
|sample_age=16
|sample_category=time courses
|sample_category=time courses
Line 88: Line 105:
|sample_strain=
|sample_strain=
|sample_tissue=
|sample_tissue=
|timecourse=human_mesenchymal_stem_cells_adipose_derived
|time= 00hr00min
|timecourse=MSC_to_adipocyte_(human)
|top_motifs=ESR1:2.02573727315;HES1:1.72611809568;ALX4:1.58826309069;UFEwm:1.52737903139;ZNF238:1.48459998148;NR3C1:1.40247414543;GFI1B:1.38883834376;PAX1,9:1.28178335846;TAL1_TCF{3,4,12}:1.27930546984;MYBL2:1.26125566922;SRF:1.24775995881;RXR{A,B,G}:1.19514043528;GATA4:1.18609425721;TFAP4:1.18212138109;HOX{A4,D4}:1.16364871144;MAFB:1.13618683504;HOX{A6,A7,B6,B7}:1.12806031888;GLI1..3:1.12780594672;KLF4:1.11267330234;NANOG{mouse}:1.1074199555;NKX3-2:1.07594330604;HOX{A5,B5}:1.05650253213;TEAD1:1.03574467639;GCM1,2:1.03485825424;NKX2-2,8:1.02887143729;EVI1:1.02759469568;GZF1:0.996448140873;IKZF1:0.969391829643;EN1,2:0.942247090375;XBP1:0.940547584437;RXRA_VDR{dimer}:0.929304934803;ATF6:0.925074786391;TLX1..3_NFIC{dimer}:0.874896788483;SPZ1:0.824073146202;HAND1,2:0.782542287394;GTF2I:0.781492824129;HMGA1,2:0.776974301656;EBF1:0.770318981822;NFE2L1:0.768722791504;LHX3,4:0.752071646138;PAX4:0.743023302123;PRDM1:0.738042813272;NKX6-1,2:0.710383606852;DBP:0.664522644802;HBP1_HMGB_SSRP1_UBTF:0.661881418946;ZIC1..3:0.661114159665;TP53:0.659558852188;GTF2A1,2:0.651537193458;NFIX:0.6436692307;MZF1:0.641669006018;NKX3-1:0.640269947792;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.609657542381;ZNF384:0.585437091333;YY1:0.585104896934;NFATC1..3:0.557530519891;TFCP2:0.540271748967;FOXL1:0.508471809618;STAT2,4,6:0.503759744636;SOX17:0.475203151261;ZNF148:0.419613831545;TBP:0.411777007489;HIF1A:0.395657229102;ALX1:0.394056874709;PAX8:0.38211896051;POU5F1:0.36030730856;PPARG:0.34895808789;RREB1:0.334072766632;NFE2L2:0.320893435621;GFI1:0.315894831;HLF:0.311396997603;MAZ:0.305369845411;PATZ1:0.305147922703;MYFfamily:0.293708703895;NR6A1:0.293359758781;HSF1,2:0.292112400677;SMAD1..7,9:0.264091693501;TEF:0.258509210012;ZNF423:0.253652281682;TFAP2B:0.249572228988;NR1H4:0.232825671433;HMX1:0.217521777802;TBX4,5:0.168226579092;AHR_ARNT_ARNT2:0.158299817794;POU1F1:0.107182690411;NKX2-3_NKX2-5:0.103723689692;AIRE:0.0845031792157;TFAP2{A,C}:0.0840446792928;VSX1,2:0.0618441303031;ZBTB6:0.0561730068672;BACH2:0.0551161452149;FOXO1,3,4:0.0407720895725;MTE{core}:0.0242621208989;CEBPA,B_DDIT3:0.00416335465475;MEF2{A,B,C,D}:-0.00502002550395;PAX6:-0.0151324797137;TOPORS:-0.0194093080728;bHLH_family:-0.0260121311945;ADNP_IRX_SIX_ZHX:-0.0521375451829;PAX5:-0.0581843349508;ELK1,4_GABP{A,B1}:-0.0602888551488;XCPE1{core}:-0.0610142076564;IRF1,2:-0.068635672702;ONECUT1,2:-0.0885755174856;DMAP1_NCOR{1,2}_SMARC:-0.0887895078524;HNF1A:-0.100069920043;RUNX1..3:-0.107417303474;MTF1:-0.1110969928;TLX2:-0.132831983335;FOXP3:-0.133571347502;FOS_FOS{B,L1}_JUN{B,D}:-0.133939609873;HIC1:-0.148796354168;STAT1,3:-0.149434027631;ZBTB16:-0.16246303988;NHLH1,2:-0.172517704186;LEF1_TCF7_TCF7L1,2:-0.175718746974;ZNF143:-0.193024995234;AR:-0.201646559946;FOXD3:-0.202670697612;CDC5L:-0.222968528826;REST:-0.229656494368;SOX5:-0.24295110594;ATF4:-0.252146952936;STAT5{A,B}:-0.259059913989;NRF1:-0.265202462334;MED-1{core}:-0.269682479064;PRRX1,2:-0.270077667118;NFE2:-0.273468252278;RFX1:-0.321176284632;EGR1..3:-0.321489762957;CDX1,2,4:-0.326087357029;TFDP1:-0.329625811638;FOSL2:-0.330055708866;HNF4A_NR2F1,2:-0.333190608298;NKX2-1,4:-0.365951823615;MYB:-0.380504383958;SREBF1,2:-0.382067010497;BPTF:-0.382792625446;PDX1:-0.387161748167;EP300:-0.392497178019;POU3F1..4:-0.401666587656;FOXM1:-0.403279714483;FOXA2:-0.408524220649;E2F1..5:-0.416270108799;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.433626503843;SOX{8,9,10}:-0.444579316764;SPI1:-0.46651429727;PAX2:-0.471510714275;IKZF2:-0.474686420843;NR5A1,2:-0.479470127436;NFKB1_REL_RELA:-0.498625245566;CREB1:-0.508156582083;NFIL3:-0.51417564994;CUX2:-0.537504555931;ATF5_CREB3:-0.547143321253;FOXP1:-0.552696181973;IRF7:-0.553786090484;SPIB:-0.557598980792;ELF1,2,4:-0.581188022251;TGIF1:-0.586952659438;HOXA9_MEIS1:-0.603889220093;PAX3,7:-0.628220577684;ETS1,2:-0.640970113296;CRX:-0.643930257075;LMO2:-0.646615109751;SOX2:-0.651095746513;ARID5B:-0.656516056637;OCT4_SOX2{dimer}:-0.698785475453;FOX{D1,D2}:-0.70334440892;JUN:-0.708598518524;FOXN1:-0.763838611391;ZFP161:-0.772399033402;NFY{A,B,C}:-0.807176650948;POU6F1:-0.817576675392;BREu{core}:-0.818311301855;NANOG:-0.823328885585;ESRRA:-0.841810593728;SNAI1..3:-0.845515059057;SP1:-0.848058487945;GATA6:-0.857535540435;POU2F1..3:-0.880325747309;PITX1..3:-0.901149356357;FOX{I1,J2}:-0.90697440864;T:-0.982234827638;PBX1:-1.01572185245;ZEB1:-1.02484062124;RFX2..5_RFXANK_RFXAP:-1.08465048081;ATF2:-1.11982592843;FOXQ1:-1.17358302191;RBPJ:-1.29157262461;FOX{F1,F2,J1}:-1.31455972076;RORA:-1.40617198388;MYOD1:-2.05628708741
|top_motifs=ESR1:2.02573727315;HES1:1.72611809568;ALX4:1.58826309069;UFEwm:1.52737903139;ZNF238:1.48459998148;NR3C1:1.40247414543;GFI1B:1.38883834376;PAX1,9:1.28178335846;TAL1_TCF{3,4,12}:1.27930546984;MYBL2:1.26125566922;SRF:1.24775995881;RXR{A,B,G}:1.19514043528;GATA4:1.18609425721;TFAP4:1.18212138109;HOX{A4,D4}:1.16364871144;MAFB:1.13618683504;HOX{A6,A7,B6,B7}:1.12806031888;GLI1..3:1.12780594672;KLF4:1.11267330234;NANOG{mouse}:1.1074199555;NKX3-2:1.07594330604;HOX{A5,B5}:1.05650253213;TEAD1:1.03574467639;GCM1,2:1.03485825424;NKX2-2,8:1.02887143729;EVI1:1.02759469568;GZF1:0.996448140873;IKZF1:0.969391829643;EN1,2:0.942247090375;XBP1:0.940547584437;RXRA_VDR{dimer}:0.929304934803;ATF6:0.925074786391;TLX1..3_NFIC{dimer}:0.874896788483;SPZ1:0.824073146202;HAND1,2:0.782542287394;GTF2I:0.781492824129;HMGA1,2:0.776974301656;EBF1:0.770318981822;NFE2L1:0.768722791504;LHX3,4:0.752071646138;PAX4:0.743023302123;PRDM1:0.738042813272;NKX6-1,2:0.710383606852;DBP:0.664522644802;HBP1_HMGB_SSRP1_UBTF:0.661881418946;ZIC1..3:0.661114159665;TP53:0.659558852188;GTF2A1,2:0.651537193458;NFIX:0.6436692307;MZF1:0.641669006018;NKX3-1:0.640269947792;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.609657542381;ZNF384:0.585437091333;YY1:0.585104896934;NFATC1..3:0.557530519891;TFCP2:0.540271748967;FOXL1:0.508471809618;STAT2,4,6:0.503759744636;SOX17:0.475203151261;ZNF148:0.419613831545;TBP:0.411777007489;HIF1A:0.395657229102;ALX1:0.394056874709;PAX8:0.38211896051;POU5F1:0.36030730856;PPARG:0.34895808789;RREB1:0.334072766632;NFE2L2:0.320893435621;GFI1:0.315894831;HLF:0.311396997603;MAZ:0.305369845411;PATZ1:0.305147922703;MYFfamily:0.293708703895;NR6A1:0.293359758781;HSF1,2:0.292112400677;SMAD1..7,9:0.264091693501;TEF:0.258509210012;ZNF423:0.253652281682;TFAP2B:0.249572228988;NR1H4:0.232825671433;HMX1:0.217521777802;TBX4,5:0.168226579092;AHR_ARNT_ARNT2:0.158299817794;POU1F1:0.107182690411;NKX2-3_NKX2-5:0.103723689692;AIRE:0.0845031792157;TFAP2{A,C}:0.0840446792928;VSX1,2:0.0618441303031;ZBTB6:0.0561730068672;BACH2:0.0551161452149;FOXO1,3,4:0.0407720895725;MTE{core}:0.0242621208989;CEBPA,B_DDIT3:0.00416335465475;MEF2{A,B,C,D}:-0.00502002550395;PAX6:-0.0151324797137;TOPORS:-0.0194093080728;bHLH_family:-0.0260121311945;ADNP_IRX_SIX_ZHX:-0.0521375451829;PAX5:-0.0581843349508;ELK1,4_GABP{A,B1}:-0.0602888551488;XCPE1{core}:-0.0610142076564;IRF1,2:-0.068635672702;ONECUT1,2:-0.0885755174856;DMAP1_NCOR{1,2}_SMARC:-0.0887895078524;HNF1A:-0.100069920043;RUNX1..3:-0.107417303474;MTF1:-0.1110969928;TLX2:-0.132831983335;FOXP3:-0.133571347502;FOS_FOS{B,L1}_JUN{B,D}:-0.133939609873;HIC1:-0.148796354168;STAT1,3:-0.149434027631;ZBTB16:-0.16246303988;NHLH1,2:-0.172517704186;LEF1_TCF7_TCF7L1,2:-0.175718746974;ZNF143:-0.193024995234;AR:-0.201646559946;FOXD3:-0.202670697612;CDC5L:-0.222968528826;REST:-0.229656494368;SOX5:-0.24295110594;ATF4:-0.252146952936;STAT5{A,B}:-0.259059913989;NRF1:-0.265202462334;MED-1{core}:-0.269682479064;PRRX1,2:-0.270077667118;NFE2:-0.273468252278;RFX1:-0.321176284632;EGR1..3:-0.321489762957;CDX1,2,4:-0.326087357029;TFDP1:-0.329625811638;FOSL2:-0.330055708866;HNF4A_NR2F1,2:-0.333190608298;NKX2-1,4:-0.365951823615;MYB:-0.380504383958;SREBF1,2:-0.382067010497;BPTF:-0.382792625446;PDX1:-0.387161748167;EP300:-0.392497178019;POU3F1..4:-0.401666587656;FOXM1:-0.403279714483;FOXA2:-0.408524220649;E2F1..5:-0.416270108799;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.433626503843;SOX{8,9,10}:-0.444579316764;SPI1:-0.46651429727;PAX2:-0.471510714275;IKZF2:-0.474686420843;NR5A1,2:-0.479470127436;NFKB1_REL_RELA:-0.498625245566;CREB1:-0.508156582083;NFIL3:-0.51417564994;CUX2:-0.537504555931;ATF5_CREB3:-0.547143321253;FOXP1:-0.552696181973;IRF7:-0.553786090484;SPIB:-0.557598980792;ELF1,2,4:-0.581188022251;TGIF1:-0.586952659438;HOXA9_MEIS1:-0.603889220093;PAX3,7:-0.628220577684;ETS1,2:-0.640970113296;CRX:-0.643930257075;LMO2:-0.646615109751;SOX2:-0.651095746513;ARID5B:-0.656516056637;OCT4_SOX2{dimer}:-0.698785475453;FOX{D1,D2}:-0.70334440892;JUN:-0.708598518524;FOXN1:-0.763838611391;ZFP161:-0.772399033402;NFY{A,B,C}:-0.807176650948;POU6F1:-0.817576675392;BREu{core}:-0.818311301855;NANOG:-0.823328885585;ESRRA:-0.841810593728;SNAI1..3:-0.845515059057;SP1:-0.848058487945;GATA6:-0.857535540435;POU2F1..3:-0.880325747309;PITX1..3:-0.901149356357;FOX{I1,J2}:-0.90697440864;T:-0.982234827638;PBX1:-1.01572185245;ZEB1:-1.02484062124;RFX2..5_RFXANK_RFXAP:-1.08465048081;ATF2:-1.11982592843;FOXQ1:-1.17358302191;RBPJ:-1.29157262461;FOX{F1,F2,J1}:-1.31455972076;RORA:-1.40617198388;MYOD1:-2.05628708741
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:13230-141I8;search_select_hide=table117:FF:13230-141I8
}}
}}

Latest revision as of 18:54, 4 June 2020

Name:mesenchymal stem cells (adipose derived), adipogenic induction
Species:Human (Homo sapiens)
Library ID:CNhs13420
Sample type:time courses
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexmale
age16
cell typeSELECT CELL TYPE
cell lineNA
companyNA
collaborationPeter Arner(Karolinska)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberF164
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004843
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13420 CAGE DRX008606 DRR009478
Accession ID Hg19

Library idBAMCTSS
CNhs13420 DRZ000903 DRZ002288
Accession ID Hg38

Library idBAMCTSS
CNhs13420 DRZ012253 DRZ013638
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004843
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10064.GAGTGG sRNA-Seq DRX036541 DRR040595
Accession ID Hg19

Library idBAMCTSS
SRhi10064.GAGTGG DRZ006960


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.00594
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.099
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.375
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.125
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0257
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.128
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.723
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0775
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0507
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.128
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0.128
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.13
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.721
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0605
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.308
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.677
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.147
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.308
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.128
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0.128
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.532
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.663
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.932
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.227
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.835
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.687
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13420

Jaspar motifP-value
MA0002.20.582
MA0003.10.408
MA0004.10.294
MA0006.10.268
MA0007.10.875
MA0009.10.345
MA0014.10.23
MA0017.10.434
MA0018.27.25204e-7
MA0019.10.543
MA0024.10.00641
MA0025.10.00134
MA0027.10.701
MA0028.10.102
MA0029.10.575
MA0030.10.0117
MA0031.10.0057
MA0035.20.0091
MA0038.10.0457
MA0039.20.0538
MA0040.10.743
MA0041.10.586
MA0042.10.845
MA0043.11.57956e-5
MA0046.10.244
MA0047.20.129
MA0048.10.0792
MA0050.10.0134
MA0051.10.217
MA0052.10.215
MA0055.10.671
MA0057.10.487
MA0058.10.284
MA0059.10.546
MA0060.16.60124e-9
MA0061.10.515
MA0062.23.08119e-6
MA0065.20.933
MA0066.10.31
MA0067.10.0158
MA0068.10.338
MA0069.10.0135
MA0070.10.733
MA0071.10.515
MA0072.10.297
MA0073.10.774
MA0074.10.115
MA0076.10.0341
MA0077.10.231
MA0078.10.933
MA0079.20.167
MA0080.21.79627e-8
MA0081.10.00941
MA0083.13.67834e-4
MA0084.10.0638
MA0087.10.768
MA0088.10.551
MA0090.10.00218
MA0091.10.0124
MA0092.10.0612
MA0093.10.283
MA0099.20.0315
MA0100.10.198
MA0101.10.00341
MA0102.20.0931
MA0103.13.18176e-4
MA0104.20.228
MA0105.10.154
MA0106.10.0757
MA0107.19.60855e-4
MA0108.20.615
MA0111.10.448
MA0112.23.45079e-4
MA0113.10.345
MA0114.10.538
MA0115.10.0174
MA0116.10.024
MA0117.10.526
MA0119.10.119
MA0122.10.525
MA0124.10.239
MA0125.10.784
MA0131.10.4
MA0135.10.161
MA0136.11.51265e-11
MA0137.20.745
MA0138.20.198
MA0139.10.828
MA0140.10.13
MA0141.10.423
MA0142.10.225
MA0143.10.793
MA0144.10.342
MA0145.10.0677
MA0146.10.942
MA0147.10.374
MA0148.10.178
MA0149.10.677
MA0150.10.0493
MA0152.16.96406e-4
MA0153.10.913
MA0154.10.22
MA0155.10.245
MA0156.12.1381e-8
MA0157.10.211
MA0159.10.207
MA0160.10.231
MA0162.10.0585
MA0163.10.00343
MA0164.10.759
MA0258.10.138
MA0259.10.394



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13420

Novel motifP-value
10.396
100.364
1000.691
1010.672
1020.166
1030.363
1040.724
1050.332
1060.456
1070.183
1080.2
1090.766
110.522
1100.164
1110.94
1120.158
1130.016
1140.231
1150.0789
1160.0743
1170.556
1180.536
1190.879
120.679
1200.621
1210.832
1220.00746
1230.0102
1240.357
1250.729
1260.987
1270.827
1280.345
1290.829
130.615
1300.728
1310.502
1320.282
1330.579
1340.0569
1350.807
1360.308
1370.289
1380.443
1390.898
140.248
1400.565
1410.66
1420.812
1430.878
1440.2
1450.512
1460.663
1470.304
1480.558
1490.00849
150.559
1500.255
1510.748
1520.219
1530.139
1540.865
1550.00209
1560.793
1570.463
1580.011
1590.281
160.0315
1600.189
1610.885
1620.355
1630.876
1640.135
1650.945
1660.0642
1670.977
1680.772
1690.0127
170.592
180.0992
190.00312
20.244
200.372
210.0101
220.292
230.643
240.297
250.355
260.154
270.696
280.165
290.515
30.309
300.215
310.5
328.20912e-14
330.94
340.612
350.997
360.0833
370.0574
380.643
390.12
40.277
400.238
410.353
420.846
430.428
440.125
450.928
460.275
470.994
480.743
490.924
50.9
500.78
510.862
520.865
530.126
540.582
550.146
560.878
570.95
580.423
590.0926
60.734
600.833
610.923
620.796
630.432
640.946
650.448
660.211
670.342
680.377
690.672
70.29
700.277
710.172
720.607
730.124
740.115
750.443
760.563
770.0117
780.52
790.00322
80.121
800.844
810.4
820.382
830.699
840.762
850.424
860.397
870.133
880.579
890.047
90.532
900.83
910.771
920.338
930.225
940.566
950.79
960.686
970.832
980.983
990.0352



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13420


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002570 (mesenchymal stem cell of adipose)

UBERON: Anatomy
0001013 (adipose tissue)
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000350 (experimentally modified sample)
0000344 (0 minute sample)
0000329 (adipogenic induction sample)
0000096 (human mesenchymal stem cell of adipose sample)
0000690 (human mesenchymal stem cells adipose derived, 0 minutes after adipogenic induction sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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